Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	883570	883570	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:883570G>A	uc001abz.3	-	14	1659	c.1600C>T	c.(1600-1602)CTG>TTG	p.L534L	NOC2L_uc001aby.3_Silent_p.L331L|NOC2L_uc009vjq.2_Silent_p.L534L	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	534						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		TGGCTGTGCAGGTACTCCAGG	0.657													4	9					0	0	0.00116845	0	0
ACAP3	116983	broad.mit.edu	37	1	1236057	1236057	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:1236057G>A	uc001aeb.2	-	6	428	c.354C>T	c.(352-354)TTC>TTT	p.F118F	ACAP3_uc001ady.2_5'Flank|ACAP3_uc001aea.2_Silent_p.F76F|ACAP3_uc001aec.1_Silent_p.F76F	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	118					filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						TTGTCTCCTTGAACTTCCGCA	0.597													20	31					0	0	0.00278032	0	0
MMEL1	79258	broad.mit.edu	37	1	2524135	2524136	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:2524135_2524136CC>TT	uc001ajy.2	-	21	2239_2240	c.2025_2026GG>AA	c.(2023-2028)GGGGAA>GGAAAA	p.E676K	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	676	Lumenal (Potential).	Zinc; catalytic (By similarity).			proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		GCAATGTTTTCCCCAAGGGTGT	0.683													13	17					0	0	6.4e-05	0	0
CAMTA1	23261	broad.mit.edu	37	1	7700579	7700579	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:7700579G>A	uc001aoi.2	+	7	837	c.630G>A	c.(628-630)ACG>ACA	p.T210T		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CGAAATGGACGAAAGAAGAGC	0.637													30	29					0	0	0.00209593	0	0
CAMTA1	23261	broad.mit.edu	37	1	7723500	7723500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:7723500G>A	uc001aoi.2	+	9	1100	c.893G>A	c.(892-894)GGG>GAG	p.G298E		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	298					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GGGGGGTACGGGAGCCACTCG	0.642													34	38					0	0	0.00111076	0	0
PER3	8863	broad.mit.edu	37	1	7861197	7861197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:7861197G>A	uc001aoo.2	+	7	990	c.815G>A	c.(814-816)AGA>AAA	p.R272K	PER3_uc009vmg.1_Missense_Mutation_p.R273K|PER3_uc009vmh.1_Missense_Mutation_p.R273K|PER3_uc001aop.2_Missense_Mutation_p.R273K|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.R272K	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	272	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GTGAATAAAAGAATCTTCACC	0.333													68	94					0	0	0.000781405	0	0
SLC2A7	155184	broad.mit.edu	37	1	9073680	9073680	+	Silent	SNP	C	T	T	rs146907896		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:9073680C>T	uc009vmo.1	-	8	918	c.918G>A	c.(916-918)GCG>GCA	p.A306A		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	306	Extracellular (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		AGATGGTGTCCGCATAGTAGT	0.532													19	22					0	0	0.00188189	0	0
SLC2A5	6518	broad.mit.edu	37	1	9101924	9101924	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:9101924A>C	uc001apo.2	-	5	783	c.491T>G	c.(490-492)GTG>GGG	p.V164G	SLC2A5_uc010nzy.1_Missense_Mutation_p.V105G|SLC2A5_uc010nzz.1_Missense_Mutation_p.V49G|SLC2A5_uc010oaa.1_Missense_Mutation_p.V120G|SLC2A5_uc010oab.1_Missense_Mutation_p.V164G|SLC2A5_uc010oac.1_3'UTR|SLC2A5_uc001app.3_Missense_Mutation_p.V164G	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	164	Helical; Name=5; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGGGCACCACCCCGAGAGC	0.547													13	19					0	0	0.00185496	0	0
H6PD	9563	broad.mit.edu	37	1	9324773	9324773	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:9324773A>T	uc001apt.2	+	5	2494	c.2221A>T	c.(2221-2223)AAG>TAG	p.K741*		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	741	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	CCGCGCCAAGAAGGTGGCAGT	0.647													10	20					0	0	0.00136819	0	0
KIF1B	23095	broad.mit.edu	37	1	10383972	10383972	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:10383972A>G	uc001aqx.3	+	25	2591	c.2389A>G	c.(2389-2391)ACA>GCA	p.T797A	KIF1B_uc001aqw.3_Missense_Mutation_p.T751A|KIF1B_uc001aqy.2_Missense_Mutation_p.T771A|KIF1B_uc001aqz.2_Missense_Mutation_p.T797A|KIF1B_uc001ara.2_Missense_Mutation_p.T757A|KIF1B_uc001arb.2_Missense_Mutation_p.T783A	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	797					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GCTGACTGACACACTGTACTC	0.443													32	61					0	0	0.00111076	0	0
VPS13D	55187	broad.mit.edu	37	1	12409243	12409243	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:12409243C>T	uc001atv.2	+	46	9384	c.9243C>T	c.(9241-9243)ATC>ATT	p.I3081I	VPS13D_uc001atw.2_Silent_p.I3056I|VPS13D_uc001atx.2_Silent_p.I2268I	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3080					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TTCCTGCTATCATGCCAGGGG	0.507													30	67					0	0	0.00283554	0	0
LOC649330	649330	broad.mit.edu	37	1	12907288	12907288	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:12907288G>A	uc009vno.2	-	1	950	c.855C>T	c.(853-855)GAC>GAT	p.D285D	HNRNPCL1_uc010obf.1_Silent_p.D285D	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	285							nucleic acid binding|nucleotide binding				0						CATTGGTGCTGTCTCTGTCAT	0.438													49	103					0	0	0.000781405	0	0
LOC649330	649330	broad.mit.edu	37	1	12907921	12907921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:12907921C>T	uc009vno.2	-	1	317	c.222G>A	c.(220-222)ATG>ATA	p.M74I	HNRNPCL1_uc010obf.1_Missense_Mutation_p.M74I	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	74							nucleic acid binding|nucleotide binding				0						GGCTAGCAATCATTCTGCCAT	0.502													15	87					0	0	0.000422831	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939710	12939710	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:12939710G>A	uc001aun.2	-	4	1163	c.1092C>T	c.(1090-1092)ATC>ATT	p.I364I		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	364	LRR 5.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGGAGTCTATGATGCCACAGT	0.512													102	152					0	0	0.000781405	0	0
EFHD2	79180	broad.mit.edu	37	1	15752394	15752394	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:15752394C>T	uc001awh.2	+	2	413	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	112	EF-hand 1.|1 (Potential).					membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		ACGGCTTCATCGACCTGATGG	0.542													48	68					0	0	0.000781405	0	0
EPHA2	1969	broad.mit.edu	37	1	16458928	16458928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:16458928G>A	uc001aya.1	-	12	2197	c.2060C>T	c.(2059-2061)CCC>CTC	p.P687L		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	687	Mediates interaction with ARHGEF16 and ELMO2.|Protein kinase.|Cytoplasmic (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GATCATCATGGGCTTGTCTGT	0.443													22	41					0	0	0.00278032	0	0
CROCC	9696	broad.mit.edu	37	1	17272860	17272860	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:17272860T>C	uc001azt.2	+	16	2312	c.2243T>C	c.(2242-2244)CTT>CCT	p.L748P	CROCC_uc009voz.1_Missense_Mutation_p.L511P|CROCC_uc001azu.2_Missense_Mutation_p.L51P	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	748	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		AACGAGAGCCTTGCTCAGGAC	0.652													22	59					0	0	0.000878237	0	0
PADI4	23569	broad.mit.edu	37	1	17690064	17690064	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:17690064C>T	uc001baj.2	+	16	1834	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	602					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CCAAGCCCTTCGGGCCCGTCA	0.632													7	11					0	0	0.000274275	0	0
ACTL8	81569	broad.mit.edu	37	1	18152938	18152938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:18152938C>T	uc001bat.2	+	3	1241	c.1025C>T	c.(1024-1026)TCC>TTC	p.S342F		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	342						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CTAGGAGCGTCCGTGGTGGCT	0.547											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	26					0	0	0.000958276	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19204015	19204015	+	Silent	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:19204015A>C	uc001bbb.2	-	10	1308	c.1032T>G	c.(1030-1032)GGT>GGG	p.G344G	ALDH4A1_uc010ocu.1_Silent_p.G284G|ALDH4A1_uc001bbc.2_Silent_p.G344G	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	344					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	ACTTCTGGCCACCGTACTCGA	0.647													4	15					0	0	0.00024832	0	0
AKR7A2	8574	broad.mit.edu	37	1	19630880	19630880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:19630880C>T	uc001bbw.2	-	7	941	c.919G>A	c.(919-921)GGT>AGT	p.G307S	AKR7A2_uc001bbx.2_Missense_Mutation_p.G272S	NM_003689	NP_003680	O43488	ARK72_HUMAN	aldo-keto reductase family 7, member A2	307					carbohydrate metabolic process|cellular aldehyde metabolic process	Golgi apparatus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00461)|BRCA - Breast invasive adenocarcinoma(304;1.83e-05)|Kidney(64;0.000167)|GBM - Glioblastoma multiforme(114;0.00115)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCGTGGGCACCCTGCAAGGGA	0.642													28	51					0	0	0.001512	0	0
HSPG2	3339	broad.mit.edu	37	1	22173080	22173080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:22173080G>A	uc001bfj.2	-	63	8217	c.8177C>T	c.(8176-8178)TCC>TTC	p.S2726F	HSPG2_uc009vqd.2_Missense_Mutation_p.S2727F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2726	Ig-like C2-type 12.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GATGGGCATGGAGCTGCCAGG	0.597													25	49					0	0	0.00127121	0	0
MYOM3	127294	broad.mit.edu	37	1	24383875	24383876	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:24383875_24383876GG>AA	uc001bin.3	-	37	4455_4456	c.4292_4293CC>TT	c.(4291-4293)CCC>CTT	p.P1431L	MYOM3_uc001bil.3_Missense_Mutation_p.P324L|MYOM3_uc001bim.3_Missense_Mutation_p.P1088L	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1431										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCAGCTCCTTGGGCTCGTCCCC	0.574													20	22					0	0	6.4e-05	0	0
CATSPER4	378807	broad.mit.edu	37	1	26526533	26526533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:26526533G>A	uc010oez.1	+	7	971	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	CATSPER4_uc010oey.1_Missense_Mutation_p.R146Q|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	324	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		CAACAGCAACGAATAACCTTT	0.512													15	15					0	0	0.000308642	0	0
ARID1A	8289	broad.mit.edu	37	1	27057884	27057884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:27057884C>T	uc001bmv.1	+	3	1965	c.1592C>T	c.(1591-1593)CCG>CTG	p.P531L	ARID1A_uc001bmt.1_Missense_Mutation_p.P531L|ARID1A_uc001bmu.1_Missense_Mutation_p.P531L|ARID1A_uc001bmw.1_Missense_Mutation_p.P148L	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	531					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CAGCAGTCCCCGGCTCCATAC	0.622			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								42	75					0	0	0.000781405	0	0
DNAJC8	22826	broad.mit.edu	37	1	28537130	28537130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:28537130G>A	uc001bpn.2	-	4	289	c.256C>T	c.(256-258)CCT>TCT	p.P86S	DNAJC8_uc001bpo.2_RNA	NM_014280	NP_055095	O75937	DNJC8_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 8	86	J.				nuclear mRNA splicing, via spliceosome|protein folding	nucleoplasm	heat shock protein binding|unfolded protein binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.08e-05)|all_lung(284;4.29e-05)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.0105)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		OV - Ovarian serous cystadenocarcinoma(117;2.81e-22)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00275)|BRCA - Breast invasive adenocarcinoma(304;0.0059)|STAD - Stomach adenocarcinoma(196;0.00671)|READ - Rectum adenocarcinoma(331;0.0649)		TTTTTGTCAGGATGCACCAAG	0.398													65	97					0	0	0.000781405	0	0
PTPRU	10076	broad.mit.edu	37	1	29618476	29618476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:29618476C>T	uc001bru.2	+	16	2554	c.2444C>T	c.(2443-2445)ACC>ATC	p.T815I	PTPRU_uc001brv.2_Missense_Mutation_p.T805I|PTPRU_uc001brw.2_Missense_Mutation_p.T805I|PTPRU_uc009vtq.2_Missense_Mutation_p.T805I|PTPRU_uc009vtr.2_Missense_Mutation_p.T805I	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	815	Mediates interaction with CTNNB1 (By similarity).|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GACCAGAGCACCCTGCAGGAG	0.627													12	28					0	0	0.00185496	0	0
PUM1	9698	broad.mit.edu	37	1	31425183	31425184	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:31425183_31425184GG>AA	uc001bsi.1	-	16	2731_2732	c.2618_2619CC>TT	c.(2617-2619)GCC>GTT	p.A873V	PUM1_uc001bsf.1_Missense_Mutation_p.A539V|PUM1_uc001bsg.1_Missense_Mutation_p.A607V|PUM1_uc001bsh.1_Missense_Mutation_p.A873V|PUM1_uc001bsj.1_Missense_Mutation_p.A847V|PUM1_uc010oga.1_Missense_Mutation_p.A729V|PUM1_uc001bsk.1_Missense_Mutation_p.A909V|PUM1_uc010ogb.1_Missense_Mutation_p.A814V	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	873	PUM-HD.|Pumilio 1.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CAGCTGGTGTGGCACGCTCCAG	0.46													17	31					0	0	6.4e-05	0	0
BSDC1	55108	broad.mit.edu	37	1	32842272	32842272	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:32842272G>A	uc001bvh.3	-	9	794	c.747C>T	c.(745-747)TTC>TTT	p.F249F	BSDC1_uc010ohg.1_Silent_p.F266F|BSDC1_uc010ohh.1_Silent_p.F193F|BSDC1_uc010ohi.1_Silent_p.F154F|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Silent_p.F145F|BSDC1_uc001bvi.2_Silent_p.F266F	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	249							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CTCCTTCAGGGAATGTAGAAA	0.532													33	40					0	0	0.00058488	0	0
ZNF362	149076	broad.mit.edu	37	1	33764608	33764608	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:33764608G>A	uc001bxc.1	+	9	1394	c.1224G>A	c.(1222-1224)ACG>ACA	p.T408T		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	408					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCCAGAGGACGGAGTCCCCCG	0.642											OREG0013343	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	24					0	0	0.000878237	0	0
CSMD2	114784	broad.mit.edu	37	1	34080129	34080129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:34080129C>T	uc001bxn.1	-	40	6017	c.5988G>A	c.(5986-5988)TGG>TGA	p.W1996*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W2036*|CSMD2_uc001bxo.1_Nonsense_Mutation_p.W909*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1996	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTGCTATTTTCCAGGAGCAGT	0.433													7	10					0	0	0.000274275	0	0
CSMD2	114784	broad.mit.edu	37	1	34286138	34286138	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:34286138G>A	uc001bxn.1	-	8	1040	c.1011C>T	c.(1009-1011)TCC>TCT	p.S337S	CSMD2_uc001bxm.1_Silent_p.S377S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	337	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TATGTCCTTGGGACACACCAA	0.438													56	71					0	0	0.000781405	0	0
C1orf216	127703	broad.mit.edu	37	1	36181741	36181741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:36181741G>A	uc001bzh.1	-	2	670	c.182C>T	c.(181-183)TCC>TTC	p.S61F		NM_152374	NP_689587	Q8TAB5	CA216_HUMAN	hypothetical protein LOC127703	61										skin(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				TGACTCAGAGGAGCTCCTCCT	0.602											OREG0013357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	32					0	0	0.000953801	0	0
GRIK3	2899	broad.mit.edu	37	1	37270649	37270649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:37270649G>A	uc001caz.2	-	15	2639	c.2504C>T	c.(2503-2505)TCT>TTT	p.S835F	GRIK3_uc001cba.1_Missense_Mutation_p.S835F	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	835	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CACCAGCACAGAGAGGACCAG	0.592													21	31					0	0	0.00152264	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37947358	37947358	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:37947358G>C	uc001cbb.3	+	4	890	c.740G>C	c.(739-741)CGT>CCT	p.R247P	ZC3H12A_uc001cbc.1_5'UTR	NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	247					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GACACATACCGTGACCTCCAA	0.582													26	35					0	0	0.000720815	0	0
EPHA10	284656	broad.mit.edu	37	1	38187513	38187513	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:38187513C>T	uc009vvi.2	-	11	2051	c.1965G>A	c.(1963-1965)CGG>CGA	p.R655R	EPHA10_uc001cbt.2_5'Flank|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	655	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GCTCCCCAAACCGCCCTGTGG	0.612													3	8					0	0	0.00024832	0	0
MACF1	23499	broad.mit.edu	37	1	39934333	39934333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:39934333C>T	uc010oiu.1	+	61	17278	c.17147C>T	c.(17146-17148)ACC>ATC	p.T5716I	MACF1_uc010ois.1_Missense_Mutation_p.T5208I|MACF1_uc001cde.1_Missense_Mutation_p.T85I|MACF1_uc001cdf.1_Missense_Mutation_p.T91I|MACF1_uc001cdg.2_5'UTR|MACF1_uc001cdh.2_5'UTR	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7166	C-terminal tail (By similarity).|GAR.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CTGCGCAGCACCGTGATGGTT	0.433													21	36					0	0	0.00188189	0	0
NT5C1A	84618	broad.mit.edu	37	1	40131882	40131882	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:40131882G>A	uc001cdq.1	-	2	162	c.162C>T	c.(160-162)ATC>ATT	p.I54I		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	54					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			AGGACACAGCGATGGTGACTG	0.587													8	24					0	0	0.000673444	0	0
MFSD2A	84879	broad.mit.edu	37	1	40434365	40434365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:40434365C>T	uc001cev.2	+	13	1697	c.1516C>T	c.(1516-1518)CCC>TCC	p.P506S	MFSD2A_uc010ojb.1_Missense_Mutation_p.P454S|MFSD2A_uc001ceu.2_Missense_Mutation_p.P493S|MFSD2A_uc010ojc.1_Missense_Mutation_p.P337S|MFSD2A_uc009vvy.2_RNA|MFSD2A_uc001cex.2_Missense_Mutation_p.P157S	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	506					transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						CAAAATGTACCCCATTGATGA	0.577													36	44					0	0	0.00148497	0	0
FOXJ3	22887	broad.mit.edu	37	1	42657072	42657072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:42657072G>A	uc001che.2	-	11	1565	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L	FOXJ3_uc001chf.2_Missense_Mutation_p.P418L|FOXJ3_uc001chg.2_Missense_Mutation_p.P418L|FOXJ3_uc001chh.1_Missense_Mutation_p.P384L	NM_014947	NP_055762	Q9UPW0	FOXJ3_HUMAN	forkhead box J3	418					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)	2	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ATGTGGAGAGGGATGCTGGGG	0.577													25	36					0	0	0.000720815	0	0
TIE1	7075	broad.mit.edu	37	1	43770717	43770717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:43770717C>T	uc001ciu.2	+	2	333	c.254C>T	c.(253-255)TCG>TTG	p.S85L	TIE1_uc010okd.1_Missense_Mutation_p.S85L|TIE1_uc010oke.1_Missense_Mutation_p.S40L|TIE1_uc009vwq.2_Missense_Mutation_p.S85L|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'Flank|TIE1_uc010oka.1_Missense_Mutation_p.S85L|TIE1_uc010okb.1_Missense_Mutation_p.S85L|TIE1_uc010okc.1_Missense_Mutation_p.S85L	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	85	Extracellular (Potential).|Ig-like C2-type 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity	p.S85S(1)		lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGCAACGGTTCGCACCAGGTC	0.736													4	8					0	0	0.00116845	0	0
SLC6A9	6536	broad.mit.edu	37	1	44467191	44467191	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:44467191G>A	uc001cll.2	-	9	1482	c.1290C>T	c.(1288-1290)TCC>TCT	p.S430S	SLC6A9_uc009vxe.2_Silent_p.S286S|SLC6A9_uc010okm.1_Silent_p.S357S|SLC6A9_uc001clm.2_Silent_p.S376S|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.S361S|SLC6A9_uc001cln.2_Silent_p.S357S|SLC6A9_uc010oko.1_Silent_p.S246S|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	430						integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CTGCCACACGGGACACATCCA	0.592													24	51					0	0	0.000586117	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45524428	45524428	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:45524428G>A	uc001cnd.2	-	4	1333	c.1105C>T	c.(1105-1107)CGA>TGA	p.R369*		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	369							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					AGCATTTCTCGAACCTGACAC	0.483													36	59					0	0	0.000781405	0	0
CYP4B1	1580	broad.mit.edu	37	1	47283637	47283637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:47283637G>A	uc001cqm.3	+	10	1289	c.1205G>A	c.(1204-1206)GGA>GAA	p.G402E	CYP4B1_uc001cqn.3_Missense_Mutation_p.G403E|CYP4B1_uc009vym.2_Missense_Mutation_p.G388E|CYP4B1_uc010omk.1_Missense_Mutation_p.G239E	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	402					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CTGCCCACAGGAAGCCTGATC	0.572													31	74					0	0	0.00111076	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402415	47402415	+	Missense_Mutation	SNP	C	T	T	rs148717576		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:47402415C>T	uc001cqp.3	-	4	482	c.431G>A	c.(430-432)CGG>CAG	p.R144Q	CYP4A11_uc001cqq.2_Missense_Mutation_p.R144Q|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	144					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GGTCAGCATCCGTCGATGCTG	0.443													19	39					0	0	0.00229938	0	0
NRD1	4898	broad.mit.edu	37	1	52299747	52299747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:52299747C>T	uc001ctc.3	-	6	1334	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K	NRD1_uc009vzb.2_Missense_Mutation_p.E33K|NRD1_uc001ctd.3_Missense_Mutation_p.E270K|NRD1_uc001cte.2_Missense_Mutation_p.E206K|NRD1_uc001ctf.2_Missense_Mutation_p.E270K|NRD1_uc010ong.1_RNA|NRD1_uc009vzc.1_Missense_Mutation_p.E138K	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	269					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						ACAGTGCGTTCACAATCAGTT	0.373													73	96					0	0	0.000781405	0	0
PODN	127435	broad.mit.edu	37	1	53535657	53535657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:53535657G>A	uc001cuv.2	+	2	281	c.274G>A	c.(274-276)GAA>AAA	p.E92K	PODN_uc001cuw.2_Missense_Mutation_p.E73K|PODN_uc010onr.1_Missense_Mutation_p.E73K|PODN_uc010ons.1_Missense_Mutation_p.E92K	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	44					negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						CGAAGAGAACGAATTTGCGGA	0.602													4	10					0	0	0.00116845	0	0
CPT2	1376	broad.mit.edu	37	1	53676142	53676143	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:53676142_53676143CC>TT	uc001cvb.3	+	4	1311_1312	c.796_797CC>TT	c.(796-798)CCC>TTC	p.P266F		NM_000098	NP_000089	P23786	CPT2_HUMAN	carnitine O-palmitoyltransferase precursor	266	Mitochondrial matrix (By similarity).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity				0					L-Carnitine(DB00583)|Perhexiline(DB01074)	CATTGTGAGCCCCTCGGAAATC	0.505													19	38					0	0	6.4e-05	0	0
LRP8	7804	broad.mit.edu	37	1	53730059	53730059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:53730059C>T	uc001cvi.1	-	10	1579	c.1437G>A	c.(1435-1437)ATG>ATA	p.M479I	LRP8_uc001cvh.1_Missense_Mutation_p.M32I|LRP8_uc001cvk.1_Missense_Mutation_p.M309I|LRP8_uc001cvj.1_Missense_Mutation_p.M479I|LRP8_uc001cvl.1_Missense_Mutation_p.M350I|LRP8_uc001cvm.1_Missense_Mutation_p.M64I	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	479	LDL-receptor class B 1.|Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						TGGCCTTGTCCATGTAGGCGC	0.562													5	6					0	0	0.00116845	0	0
TTC4	7268	broad.mit.edu	37	1	55188376	55188376	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:55188376C>T	uc001cxx.3	+	5	551	c.498C>T	c.(496-498)CAC>CAT	p.H166H	C1orf175_uc001cxq.2_RNA|TTC4_uc001cxw.3_Silent_p.H166H|TTC4_uc001cxv.2_Silent_p.H177H	NM_004623	NP_004614	O95801	TTC4_HUMAN	tetratricopeptide repeat domain 4	166	TPR 3.						binding				0						AACTGAAACACTTTGCCGAGG	0.483													42	55					0	0	0.000781405	0	0
TMEM61	199964	broad.mit.edu	37	1	55457526	55457526	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:55457526A>G	uc001cyd.2	+	3	657	c.383A>G	c.(382-384)GAC>GGC	p.D128G		NM_182532	NP_872338	Q8N0U2	TMM61_HUMAN	transmembrane protein 61	128						integral to membrane					0						AAAGTGGTTGACATCCCCACT	0.632													27	47					0	0	0.00178596	0	0
CACHD1	57685	broad.mit.edu	37	1	65099822	65099822	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:65099822G>A	uc001dbo.1	+	7	837	c.732G>A	c.(730-732)AGG>AGA	p.R244R	CACHD1_uc001dbp.1_5'UTR|CACHD1_uc001dbq.1_5'UTR	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	295	Extracellular (Potential).|VWFA.				calcium ion transport	integral to membrane				ovary(2)	2						AGACAAAAAGGAAAATGTCCA	0.473													32	33					0	0	0.00209593	0	0
IL12RB2	3595	broad.mit.edu	37	1	67838131	67838131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:67838131C>T	uc001ddu.2	+	11	2112	c.1472C>T	c.(1471-1473)TCC>TTC	p.S491F	IL12RB2_uc010oqi.1_Missense_Mutation_p.S491F|IL12RB2_uc010oqj.1_Missense_Mutation_p.S491F|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Intron|IL12RB2_uc010oqm.1_Missense_Mutation_p.S491F|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	491	Fibronectin type-III 4.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AACATAAAATCCTACATCTGT	0.438													22	47					0	0	0.00106085	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507258	74507258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:74507258C>T	uc001dfy.3	-	7	1549	c.1357G>A	c.(1357-1359)GTT>ATT	p.V453I	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	453										ovary(2)	2						GCTACTCTAACTCTTTCTCGA	0.313													52	87					0	0	0.000781405	0	0
LPHN2	23266	broad.mit.edu	37	1	82409110	82409110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:82409110G>A	uc001dit.3	+	6	1036	c.855G>A	c.(853-855)ATG>ATA	p.M285I	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.M285I|LPHN2_uc001div.2_Missense_Mutation_p.M285I|LPHN2_uc009wcd.2_Missense_Mutation_p.M285I	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	285	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ACAATGGAATGATAGTTATTA	0.423													14	17					0	0	0.00185496	0	0
DNASE2B	58511	broad.mit.edu	37	1	84880389	84880389	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:84880389G>A	uc001djt.1	+	6	957	c.924G>A	c.(922-924)TGG>TGA	p.W308*	DNASE2B_uc001dju.1_Nonsense_Mutation_p.W100*|DNASE2B_uc009wch.1_Nonsense_Mutation_p.W100*	NM_021233	NP_067056	Q8WZ79	DNS2B_HUMAN	deoxyribonuclease II beta isoform 1 precursor	308					DNA metabolic process	lysosome	deoxyribonuclease II activity				0				all cancers(265;0.00303)|Epithelial(280;0.0112)|OV - Ovarian serous cystadenocarcinoma(397;0.0808)		ATGCCAAGTGGTGTATTTCCC	0.408								Direct_reversal_of_damage					19	19					0	0	0.00121646	0	0
GBP6	163351	broad.mit.edu	37	1	89851024	89851024	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:89851024T>C	uc001dnf.2	+	11	2172	c.1898T>C	c.(1897-1899)TTT>TCT	p.F633S	GBP6_uc010ost.1_Missense_Mutation_p.F503S	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	633							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		AAGCTCCCCTTTTAAGGATAT	0.313													15	30					0	0	0.000566183	0	0
BRDT	676	broad.mit.edu	37	1	92459696	92459696	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:92459696C>T	uc001dok.3	+	15	2521	c.2172C>T	c.(2170-2172)ACC>ACT	p.T724T	BRDT_uc001dol.3_Silent_p.T724T|BRDT_uc010osz.1_Silent_p.T728T|BRDT_uc009wdf.2_Silent_p.T651T|BRDT_uc010ota.1_Silent_p.T678T|BRDT_uc010otb.1_Silent_p.T678T|BRDT_uc001dom.3_Silent_p.T724T	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	724					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TTCATCAGACCACACCTTCAC	0.338													33	67					0	0	0.000814825	0	0
ABCA4	24	broad.mit.edu	37	1	94574255	94574255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:94574255C>T	uc001dqh.2	-	4	424	c.320G>A	c.(319-321)CGA>CAA	p.R107Q	ABCA4_uc010otn.1_Missense_Mutation_p.R107Q	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	107	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTGAAAATCTCGATATACCCT	0.393													22	35					0	0	0.000720815	0	0
PALMD	54873	broad.mit.edu	37	1	100154993	100154993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:100154993G>A	uc001dsg.2	+	7	1620	c.1177G>A	c.(1177-1179)GAA>AAA	p.E393K	PALMD_uc001dsf.2_Missense_Mutation_p.E393K	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	393					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GGAGGACGAGGAAGATGTCAG	0.463													9	13					0	0	0.000274275	0	0
ALX3	257	broad.mit.edu	37	1	110604186	110604186	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:110604186C>T	uc001dzb.2	-	3	683	c.595_splice	c.e3-1	p.V199_splice		NM_006492	NP_006483	O95076	ALX3_HUMAN	aristaless-like homeobox 3							nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGAACCAGACCTGGGGGCAGG	0.612													10	33					0	0	0.000673444	0	0
KCNA2	3737	broad.mit.edu	37	1	111146504	111146504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:111146504C>T	uc001dzu.2	-	2	1397	c.901G>A	c.(901-903)GTC>ATC	p.V301I	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Missense_Mutation_p.V301I	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	301	Helical; Voltage-sensor; Name=Segment S4; (Potential).					juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		ATCCTAAAGACTCTTACCAAC	0.527													32	54					0	0	0.00178596	0	0
MAGI3	260425	broad.mit.edu	37	1	114184796	114184796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:114184796G>A	uc001edk.2	+	10	1805	c.1624G>A	c.(1624-1626)GGA>AGA	p.G542R	MAGI3_uc001edh.3_Missense_Mutation_p.G567R|MAGI3_uc001edi.3_Missense_Mutation_p.G542R|MAGI3_uc010owm.1_Missense_Mutation_p.G567R|MAGI3_uc001edj.2_Missense_Mutation_p.G263R	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	567					apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGAGCAGAATGGAAAATCGGG	0.498													48	68					0	0	0.000781405	0	0
AMPD1	270	broad.mit.edu	37	1	115222253	115222253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:115222253C>T	uc001efe.1	-	7	928	c.844G>A	c.(844-846)GAG>AAG	p.E282K	AMPD1_uc001eff.1_Missense_Mutation_p.E278K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	282					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TCCTTTAACTCGTCCATCTCG	0.428													75	95					0	0	0.000781405	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			55	96					3.63617e-18	1.50704e-17	0.000781405	1	0
SPAG17	200162	broad.mit.edu	37	1	118523897	118523897	+	Silent	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:118523897A>T	uc001ehk.2	-	43	6068	c.6000T>A	c.(5998-6000)CCT>CCA	p.P2000P		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	2000						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CCATACCTTCAGGAGATTTTG	0.393													38	42					0	0	0.00222228	0	0
HSD3B2	3284	broad.mit.edu	37	1	119962127	119962127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:119962127G>A	uc001ehs.2	+	2	1002	c.229G>A	c.(229-231)GTC>ATC	p.V77I	HSD3B2_uc001eht.2_Missense_Mutation_p.V77I|HSD3B2_uc001ehu.2_Missense_Mutation_p.V77I	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	77					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	GGACGTCTCGGTCGTCATCCA	0.502													11	22					0	0	0.00244969	0	0
ZNF697	90874	broad.mit.edu	37	1	120166578	120166578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:120166578C>T	uc001ehy.1	-	3	502	c.388G>A	c.(388-390)GAG>AAG	p.E130K		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	130	Poly-Glu.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		TCTTCCTCCTCCAGCCGGTTC	0.652													9	5					0	0	0.000274275	0	0
ADAM30	11085	broad.mit.edu	37	1	120438704	120438704	+	Silent	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:120438704G>T	uc001eij.2	-	1	410	c.256C>A	c.(256-258)CGA>AGA	p.R86R		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	86					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CGCAGATGTCGGGGCAACAGA	0.532													13	440					0.000308642	0.00126574	0.000308642	1	0
NOTCH2	4853	broad.mit.edu	37	1	120458204	120458205	+	Missense_Mutation	DNP	CC	AA	AA	rs150785478	by1000genomes	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:120458204_120458205CC>AA	uc001eik.2	-	34	7396_7397	c.7140_7141GG>TT	c.(7138-7143)GTGGGC>GTTTGC	p.G2381C		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2381	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGTACTTGCCCACAGAGGCTG	0.579			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				10	296					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144874762	144874762	+	Missense_Mutation	SNP	C	T	T	rs144570156		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:144874762C>T	uc001elw.3	-	30	5137	c.4846G>A	c.(4846-4848)GAA>AAA	p.E1616K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E1572K|PDE4DIP_uc001elv.3_Missense_Mutation_p.E623K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1616	NBPF.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCTTCCAGTTCATCAGACAGG	0.562			T	PDGFRB	MPD								52	280					0	0	0.000781405	0	0
HFE2	148738	broad.mit.edu	37	1	145415781	145415781	+	Silent	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:145415781T>C	uc001eni.2	+	3	925	c.600T>C	c.(598-600)TTT>TTC	p.F200F	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Silent_p.F87F|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	200					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ACTTCCTCTTTGTCCAAGCCA	0.582													29	92					0	0	0.00127121	0	0
POGZ	23126	broad.mit.edu	37	1	151378521	151378521	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:151378521C>A	uc001eyd.1	-	19	3296	c.2990G>T	c.(2989-2991)CGA>CTA	p.R997L	POGZ_uc001eye.1_Missense_Mutation_p.R944L|POGZ_uc010pdb.1_Missense_Mutation_p.R988L|POGZ_uc001eyf.1_Missense_Mutation_p.R953L|POGZ_uc010pdc.1_Missense_Mutation_p.R935L|POGZ_uc009wmv.1_Missense_Mutation_p.R902L|POGZ_uc010pdd.1_Missense_Mutation_p.R488L	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	997					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CTGGGGATTTCGGAAGTGTTC	0.507													21	45					3.51602e-12	1.45107e-11	0.00121646	1	0
HRNR	388697	broad.mit.edu	37	1	152187528	152187528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:152187528C>T	uc001ezt.1	-	3	6653	c.6577G>A	c.(6577-6579)GGG>AGG	p.G2193R		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2193	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGAGTGCCCCGAACCGGAC	0.637													28	271					0	0	0.00283554	0	0
HRNR	388697	broad.mit.edu	37	1	152192059	152192060	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:152192059_152192060GG>AA	uc001ezt.1	-	3	2121_2122	c.2045_2046CC>TT	c.(2044-2046)TCC>TTT	p.S682F		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	682	6.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAGACCAACCGGAGCCAGACCC	0.589													103	66					0	0	6.4e-05	0	0
SPRR3	6707	broad.mit.edu	37	1	152975906	152975906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:152975906G>A	uc001fax.3	+	3	560	c.410G>A	c.(409-411)GGA>GAA	p.G137E	SPRR3_uc001faz.3_Missense_Mutation_p.G137E|SPRR3_uc001fay.2_Missense_Mutation_p.G129E	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	137	12.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTGAGCAAGGATACACCAAA	0.537													11	14					0	0	0.000673444	0	0
S100A9	6280	broad.mit.edu	37	1	153330863	153330863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:153330863G>A	uc001fbq.2	+	2	147	c.104G>A	c.(103-105)GGG>GAG	p.G35E		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	35	EF-hand 1.|1; low affinity.				cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGAACCAGGGGGAATTCAAA	0.517													14	29					0	0	0.000308642	0	0
NUP210L	91181	broad.mit.edu	37	1	154072489	154072489	+	Silent	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:154072489A>C	uc001fdw.2	-	14	2022	c.1950T>G	c.(1948-1950)GCT>GCG	p.A650A	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.A650A	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	650						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			GGGGTTCATAAGCAGCAAATG	0.408													107	108					0	0	0.000781405	0	0
NUP210L	91181	broad.mit.edu	37	1	154076511	154076511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:154076511C>T	uc001fdw.2	-	13	1868	c.1796G>A	c.(1795-1797)GGA>GAA	p.G599E	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.G599E	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	599						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGTAAAGACTCCTTGTTTATC	0.353													32	110					0	0	0.0024448	0	0
RHBG	57127	broad.mit.edu	37	1	156351984	156351984	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:156351984C>T	uc010pho.1	+	7	1142	c.1104C>T	c.(1102-1104)TAC>TAT	p.Y368Y	RHBG_uc010phm.1_Missense_Mutation_p.T201M|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Silent_p.Y299Y|RHBG_uc009wrz.2_Silent_p.Y336Y|RHBG_uc001for.2_Silent_p.Y338Y	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	368	Extracellular (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					ATGAAGCTTACGGAGATGGGT	0.547													37	105					0	0	0.00222228	0	0
NTRK1	4914	broad.mit.edu	37	1	156834185	156834185	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:156834185C>T	uc001fqh.1	+	2	308	c.252C>T	c.(250-252)CTC>CTT	p.L84L	NTRK1_uc001fqf.1_Silent_p.L54L|NTRK1_uc009wsi.1_5'UTR|NTRK1_uc001fqi.1_Silent_p.L84L|NTRK1_uc009wsk.1_Silent_p.L84L	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	84	Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	ATCTGGAGCTCCGTGATCTGA	0.622			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			18	64					0	0	0.00047179	0	0
FCRL2	79368	broad.mit.edu	37	1	157738389	157738389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:157738389C>T	uc001fre.2	-	5	757	c.698G>A	c.(697-699)GGA>GAA	p.G233E	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Missense_Mutation_p.G233E|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	233	Ig-like C2-type 3.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGTGACATTTCCTGTACCCCC	0.542													48	116					0	0	0.000781405	0	0
OR10R2	343406	broad.mit.edu	37	1	158449901	158449901	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:158449901A>G	uc010pik.1	+	1	234	c.234A>G	c.(232-234)CCA>CCG	p.P78P	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					TCCACACACCAATGTACTTCT	0.423													56	67					0	0	0.000781405	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517164	158517164	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:158517164G>A	uc010pil.1	-	1	732	c.732C>T	c.(730-732)TCC>TCT	p.S244S		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGGCACAGGTGGAGAATGCCT	0.502													19	38					0	0	0.00278032	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576808	158576808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:158576808C>T	uc010pio.1	+	1	580	c.580C>T	c.(580-582)CCG>TCG	p.P194S		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					AGATACAGGCCCGAGTGAGCT	0.488													15	36					0	0	0.00074312	0	0
OR6K2	81448	broad.mit.edu	37	1	158669861	158669861	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:158669861G>A	uc001fsu.1	-	1	582	c.582C>T	c.(580-582)ATC>ATT	p.I194I		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GAATCATGACGATGGCTCGTG	0.468													27	77					0	0	0.00058488	0	0
IGSF9	57549	broad.mit.edu	37	1	159912790	159912790	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:159912790G>A	uc001fur.2	-	3	408	c.210C>T	c.(208-210)TTC>TTT	p.F70F	IGSF9_uc001fuq.2_Silent_p.F70F	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	70	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			AGTAGAGGCCGAACTGGATGA	0.488													17	69					0	0	0.00152264	0	0
COPA	1314	broad.mit.edu	37	1	160265560	160265560	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:160265560G>A	uc009wti.2	-	23	2836	c.2442C>T	c.(2440-2442)TCC>TCT	p.S814S	COPA_uc001fvv.3_Silent_p.S823S	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	814					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AAAATCCTTTGGATACAGTCA	0.428													33	92					0	0	0.00283554	0	0
ITLN2	142683	broad.mit.edu	37	1	160914959	160914959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:160914959C>T	uc001fxd.2	-	8	1007	c.949G>A	c.(949-951)GAG>AAG	p.E317K	ITLN2_uc009wts.2_Missense_Mutation_p.E316K|ITLN2_uc010pju.1_Missense_Mutation_p.E234K	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	317					signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			ACAGCCGCCTCCGTTATCTCC	0.547													16	46					0	0	0.000958276	0	0
MPZ	4359	broad.mit.edu	37	1	161275677	161275677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:161275677C>T	uc001gaf.3	-	6	803	c.766G>A	c.(766-768)GAT>AAT	p.D256N	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	246	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			TATTTCTTATCCTTGCGAGAC	0.597													18	72					0	0	0.00229938	0	0
OLFML2B	25903	broad.mit.edu	37	1	161993142	161993142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:161993142C>T	uc001gbu.2	-	1	503	c.79G>A	c.(79-81)GGG>AGG	p.G27R	OLFML2B_uc010pkq.1_Missense_Mutation_p.G27R	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	27										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TCGCTTGTCCCTGTGAGGACA	0.592													40	29					0	0	0.00222228	0	0
C1orf226	400793	broad.mit.edu	37	1	162353118	162353118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:162353118C>T	uc001gby.2	+	2	636	c.464C>T	c.(463-465)TCA>TTA	p.S155L	C1orf226_uc010pkt.1_Missense_Mutation_p.S198L	NM_001085375	NP_001078844	A1L170	CA226_HUMAN	hypothetical protein LOC400793 isoform 2	155										ovary(1)	1						ACAGAGCCATCACCTGGGCAG	0.592													5	10					0	0	0.000602214	0	0
ALDH9A1	223	broad.mit.edu	37	1	165652297	165652297	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:165652297G>A	uc001gdh.1	-	3	483	c.378C>T	c.(376-378)TCC>TCT	p.S126S	ALDH9A1_uc010pky.1_Silent_p.S32S|ALDH9A1_uc010pkz.1_Silent_p.S116S|ALDH9A1_uc010pla.1_Silent_p.S32S	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	102					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	CCTCAAAGATGGACTTGCCAT	0.473													59	38					0	0	0.000781405	0	0
ILDR2	387597	broad.mit.edu	37	1	166891849	166891849	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:166891849G>A	uc001gdx.1	-	8	1248	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	398	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						AAGCTCTCTCGATCCTCTTTG	0.597													79	248					0	0	0.000781405	0	0
GPA33	10223	broad.mit.edu	37	1	167023580	167023580	+	Silent	SNP	G	A	A	rs35152579		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:167023580G>A	uc001gea.1	-	7	1295	c.951C>T	c.(949-951)CTC>CTT	p.L317L		NM_005814	NP_005805	Q99795	GPA33_HUMAN	transmembrane glycoprotein A33 precursor	317	Cytoplasmic (Potential).					integral to plasma membrane	receptor activity				0						GTCACTGGTCGAGGTGGTCCG	0.592													25	74					0	0	0.00209593	0	0
ADCY10	55811	broad.mit.edu	37	1	167817666	167817666	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:167817666A>C	uc001ger.2	-	19	2668	c.2370T>G	c.(2368-2370)AGT>AGG	p.S790R	ADCY10_uc009wvk.2_Missense_Mutation_p.S698R|ADCY10_uc010plj.1_Missense_Mutation_p.S637R|ADCY10_uc009wvl.2_Missense_Mutation_p.S789R	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	790					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGACTTCTTCACTTTCCTTAT	0.338													29	73					0	0	0.0024448	0	0
BRP44	25874	broad.mit.edu	37	1	167889261	167889261	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:167889261G>A	uc001ges.2	-	4	604	c.303C>T	c.(301-303)TTC>TTT	p.F101F	BRP44_uc001get.2_Silent_p.F101F|BRP44_uc001geu.2_Silent_p.F101F	NM_015415	NP_056230	O95563	BR44_HUMAN	brain protein 44	101						mitochondrion					0	all_hematologic(923;0.215)			KIRC - Kidney renal clear cell carcinoma(1967;0.247)		CCCCCACAAAGAAATTAACAG	0.353													60	149					0	0	0.000781405	0	0
SELP	6403	broad.mit.edu	37	1	169578856	169578856	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:169578856G>A	uc001ggi.3	-	8	1284	c.1219C>T	c.(1219-1221)CAG>TAG	p.Q407*	SELP_uc001ggh.2_Nonsense_Mutation_p.Q242*|SELP_uc009wvr.2_Nonsense_Mutation_p.Q407*	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	407	Sushi 4.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GTGTCATACTGAAACGCTCTC	0.502													13	32					0	0	0.00244969	0	0
SELL	6402	broad.mit.edu	37	1	169677719	169677719	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:169677719T>C	uc001ggk.2	-	3	509	c.311A>G	c.(310-312)AAC>AGC	p.N104S	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.N57S|SELL_uc001ggl.1_Missense_Mutation_p.N117S	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	104	C-type lectin.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					AAGAGATTTGTTGGTTCCCAC	0.458													6	26					0	0	0.00198382	0	0
SELE	6401	broad.mit.edu	37	1	169696892	169696892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:169696892G>A	uc001ggm.3	-	9	1613	c.1456C>T	c.(1456-1458)CCT>TCT	p.P486S	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	486	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TGGCAGGAAGGAACCTCTTCT	0.448													43	98					0	0	0.000781405	0	0
C1orf129	80133	broad.mit.edu	37	1	170931075	170931075	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:170931075G>A	uc001ghg.2	+	6	463	c.333G>A	c.(331-333)ACG>ACA	p.T111T	C1orf129_uc009wvy.2_5'UTR|C1orf129_uc010plz.1_Silent_p.T111T	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	111							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACATTCTTACGAGCTTGGTGT	0.308													14	37					0	0	0.00074312	0	0
FASLG	356	broad.mit.edu	37	1	172634869	172634869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:172634869G>A	uc001gis.2	+	4	716	c.559G>A	c.(559-561)GGG>AGG	p.G187R	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	187	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						CAATGAAACTGGGCTGTACTT	0.468													27	58					0	0	0.00209593	0	0
ANKRD45	339416	broad.mit.edu	37	1	173594003	173594003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:173594003G>A	uc001gja.1	-	5	714	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	234											0						CTCATTAATGGAAGCTTCTGT	0.393													18	51					0	0	0.00074312	0	0
RC3H1	149041	broad.mit.edu	37	1	173949997	173949997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:173949997G>A	uc001gju.3	-	5	1006	c.919C>T	c.(919-921)CTT>TTT	p.L307F	RC3H1_uc010pms.1_Missense_Mutation_p.L307F|RC3H1_uc001gjv.2_Missense_Mutation_p.L307F|RC3H1_uc010pmt.1_Missense_Mutation_p.L307F	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	307					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCTCCATAAAGCAAAGAGGAC	0.443													21	44					0	0	0.000586117	0	0
GPR52	9293	broad.mit.edu	37	1	174418005	174418005	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:174418005C>T	uc001gka.1	+	1	794	c.756C>T	c.(754-756)TCC>TCT	p.S252S	RABGAP1L_uc001gjw.2_Intron|RABGAP1L_uc001gjx.2_Intron|RABGAP1L_uc001gjy.2_Intron|RABGAP1L_uc001gjz.2_Intron|uc010pmu.1_RNA	NM_005684	NP_005675	Q9Y2T5	GPR52_HUMAN	G protein-coupled receptor 52	252	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1						TAGATTCTTCCAGAGAGACTG	0.438													34	76					0	0	0.00058488	0	0
MRPS14	63931	broad.mit.edu	37	1	174987584	174987584	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:174987584C>T	uc001gkk.2	-	2	191	c.174G>A	c.(172-174)AGG>AGA	p.R58R	MRPS14_uc009wwr.2_Silent_p.R43R	NM_022100	NP_071383	O60783	RT14_HUMAN	mitochondrial ribosomal protein S14	58					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						TGGTATTCTTCCTGAGTGAAT	0.388													67	166					0	0	0.000781405	0	0
FAM5B	57795	broad.mit.edu	37	1	177199273	177199273	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:177199273G>A	uc001glf.2	+	2	573	c.261G>A	c.(259-261)AGG>AGA	p.R87R		NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	87						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCAGGTACAGGATTTATAGGT	0.612													22	66					0	0	0.000720815	0	0
FAM5B	57795	broad.mit.edu	37	1	177245527	177245527	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:177245527C>T	uc001glf.2	+	6	1281	c.969C>T	c.(967-969)ATC>ATT	p.I323I	FAM5B_uc010pna.1_Silent_p.I73I|FAM5B_uc001glg.2_Silent_p.I218I	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	323						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TGCTGCAGATCCAGGACTCCT	0.498													10	40					0	0	0.000673444	0	0
SEC16B	89866	broad.mit.edu	37	1	177906553	177906553	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:177906553G>A	uc001gli.1	-	19	2389	c.2299C>T	c.(2299-2301)CTG>TTG	p.L767L	SEC16B_uc001glk.1_Silent_p.L444L|SEC16B_uc009wwy.1_Silent_p.L322L|SEC16B_uc001glh.1_Silent_p.L426L|SEC16B_uc009wwz.1_Silent_p.L426L|SEC16B_uc001glj.1_Silent_p.L768L	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	767					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GGCTGGAGCAGGCAGGTCTGC	0.602													4	16					0	0	0.00024832	0	0
SEC16B	89866	broad.mit.edu	37	1	177911075	177911075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:177911075C>T	uc001gli.1	-	16	2072	c.1982G>A	c.(1981-1983)GGA>GAA	p.G661E	SEC16B_uc001glk.1_Missense_Mutation_p.G338E|SEC16B_uc009wwy.1_Missense_Mutation_p.G216E|SEC16B_uc001glh.1_Missense_Mutation_p.G320E|SEC16B_uc009wwz.1_Missense_Mutation_p.G320E|SEC16B_uc001glj.1_Missense_Mutation_p.G662E	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	661					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						ACTGCTCTCTCCCTGGCTCAA	0.493													23	87					0	0	0.00047179	0	0
TDRD5	163589	broad.mit.edu	37	1	179564890	179564890	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:179564890A>T	uc001gnf.1	+	4	1018	c.768A>T	c.(766-768)GAA>GAT	p.E256D	TDRD5_uc010pnp.1_Missense_Mutation_p.E256D	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	256					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TGAGCATGGAAAAGACTTCCA	0.393													26	84					0	0	0.0024448	0	0
CACNA1E	777	broad.mit.edu	37	1	181721289	181721289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:181721289G>A	uc001gow.2	+	27	3907	c.3742G>A	c.(3742-3744)GGA>AGA	p.G1248R	CACNA1E_uc009wxs.2_Missense_Mutation_p.G1136R|CACNA1E_uc001gox.1_Missense_Mutation_p.G474R|CACNA1E_uc009wxt.2_Missense_Mutation_p.G474R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1248	III.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AACCAACAAAGGACGGGACAT	0.478													32	61					0	0	0.000814825	0	0
CACNA1E	777	broad.mit.edu	37	1	181725113	181725113	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:181725113G>A	uc001gow.2	+	29	4176	c.4011G>A	c.(4009-4011)GAG>GAA	p.E1337E	CACNA1E_uc009wxs.2_Silent_p.E1225E|CACNA1E_uc001gox.1_Silent_p.E563E|CACNA1E_uc009wxt.2_Silent_p.E563E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1337	Extracellular (Potential).|III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TAGATCATGAGAAAAACAAGA	0.488													11	46					0	0	0.00185496	0	0
CACNA1E	777	broad.mit.edu	37	1	181767462	181767462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:181767462C>T	uc001gow.2	+	47	6470	c.6305C>T	c.(6304-6306)TCT>TTT	p.S2102F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1990F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1371F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2145	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCCATCCCCTCTGTCTCTGAC	0.572													44	121					0	0	0.000781405	0	0
LAMC1	3915	broad.mit.edu	37	1	183111717	183111717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:183111717C>T	uc001gpy.3	+	28	4879	c.4622C>T	c.(4621-4623)ACC>ATC	p.T1541I		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	1541	Potential.|Domain II and I.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATTGAAGGCACCCTAAACAAA	0.453													13	30					0	0	0.00185496	0	0
LAMC2	3918	broad.mit.edu	37	1	183177078	183177078	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:183177078G>T	uc001gqa.2	+	2	456	c.142G>T	c.(142-144)GGT>TGT	p.G48C	LAMC2_uc001gpz.3_Missense_Mutation_p.G48C|LAMC2_uc010poa.1_5'UTR	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	48	Laminin EGF-like 1.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CAGACAAACTGGTAATGGATT	0.473													11	277					0.000978159	0.00400299	0.000978159	1	0
EDEM3	80267	broad.mit.edu	37	1	184677385	184677385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:184677385G>A	uc010pok.1	-	17	2200	c.1939C>T	c.(1939-1941)CCA>TCA	p.P647S	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Missense_Mutation_p.P647S	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	647					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						ACAGCTCGTGGAGGCAGCTGC	0.458													12	23					0	0	0.000978159	0	0
FAM5C	339479	broad.mit.edu	37	1	190424010	190424010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:190424010C>T	uc001gse.1	-	2	243	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	FAM5C_uc010pot.1_5'UTR	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	4						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGCTCTGCTTCGCCATATCAT	0.463													21	10					0	0	0.00229938	0	0
CFHR1	3078	broad.mit.edu	37	1	196801090	196801090	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:196801090G>A	uc001gtn.2	+	6	1068	c.954G>A	c.(952-954)TGG>TGA	p.W318*	CFHR1_uc001gtm.2_Nonsense_Mutation_p.W222*	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	318	Sushi 5.				complement activation	extracellular space					0						CAACATGTTGGGATGGGAAAC	0.358													29	74					0	0	0.00283554	0	0
ASPM	259266	broad.mit.edu	37	1	197071094	197071094	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:197071094G>A	uc001gtu.2	-	18	7544	c.7287C>T	c.(7285-7287)TCC>TCT	p.S2429S	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Silent_p.S277S	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2429	IQ 25.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CTTTTTTGAGGGAAATGAATC	0.378													5	11					0	0	0.000602214	0	0
CRB1	23418	broad.mit.edu	37	1	197404099	197404099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:197404099G>A	uc001gtz.2	+	9	3241	c.3106G>A	c.(3106-3108)GAA>AAA	p.E1036K	CRB1_uc010poz.1_Missense_Mutation_p.E1012K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E924K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.E517K|CRB1_uc001gub.1_Missense_Mutation_p.E685K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1036	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CACATGGCACGAAGTGACCCT	0.453													25	53					0	0	0.00106085	0	0
CRB1	23418	broad.mit.edu	37	1	197404165	197404165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:197404165G>A	uc001gtz.2	+	9	3307	c.3172G>A	c.(3172-3174)GAA>AAA	p.E1058K	CRB1_uc010poz.1_Missense_Mutation_p.E1034K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E946K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.E539K|CRB1_uc001gub.1_Missense_Mutation_p.E707K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1058	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGTGGACAACGAAACACCTTT	0.443													13	42					0	0	0.000422831	0	0
DENND1B	163486	broad.mit.edu	37	1	197614842	197614842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:197614842C>T	uc001guf.3	-	9	877	c.539G>A	c.(538-540)GGA>GAA	p.G180E	DENND1B_uc010ppe.1_Missense_Mutation_p.G160E|DENND1B_uc010ppf.1_RNA|DENND1B_uc001gue.3_Missense_Mutation_p.G150E|DENND1B_uc001gug.3_5'UTR	NM_144977	NP_659414	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 2	180	DENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						TGTTGGGAGTCCAGTTACATC	0.269													10	19					0	0	0.00136819	0	0
KIF14	9928	broad.mit.edu	37	1	200559285	200559285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:200559285C>T	uc010ppk.1	-	17	3368	c.2929G>A	c.(2929-2931)GAA>AAA	p.E977K	KIF14_uc010ppj.1_Missense_Mutation_p.E486K	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	977	Potential.|Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						ATTTTGCTTTCATATGCAGCT	0.378													43	145					0	0	0.000781405	0	0
CACNA1S	779	broad.mit.edu	37	1	201042689	201042690	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:201042689_201042690GG>TT	uc001gvv.2	-	15	2371_2372	c.2144_2145CC>AA	c.(2143-2145)CCC>CAA	p.P715Q		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	715	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGCAGTGGTGGGGATGCCCTC	0.55													14	465					0	0	6.4e-05	0	0
ATP2B4	493	broad.mit.edu	37	1	203678659	203678659	+	Silent	SNP	C	T	T	rs150320737		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:203678659C>T	uc001gzw.2	+	11	2672	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I	ATP2B4_uc001gzv.2_Silent_p.I596I|ATP2B4_uc009xaq.2_Silent_p.I596I	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	596	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CCTCTGAGATCATCTTGCGCA	0.542													34	31					0	0	0.00111076	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204394120	204394120	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:204394120G>A	uc001haw.2	-	34	5244	c.4765C>T	c.(4765-4767)CAG>TAG	p.Q1589*	PIK3C2B_uc010pqv.1_Nonsense_Mutation_p.Q1561*	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1589	C2.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			ACGCTCAGCTGGAGCTCCCGC	0.572													6	15					0	0	0.00198382	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204426965	204426965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:204426965G>A	uc001haw.2	-	10	2083	c.1604C>T	c.(1603-1605)TCC>TTC	p.S535F	PIK3C2B_uc010pqv.1_Missense_Mutation_p.S535F|PIK3C2B_uc001hax.1_Missense_Mutation_p.S535F|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	535					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GGCCTTGACGGACTGGACCAC	0.632													11	35					0	0	0.00185496	0	0
IL19	29949	broad.mit.edu	37	1	207013243	207013243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:207013243G>A	uc001hep.2	+	5	1198	c.259G>A	c.(259-261)GAC>AAC	p.D87N	IL19_uc001heo.2_Missense_Mutation_p.D125N|IL19_uc010prx.1_Missense_Mutation_p.D87N	NM_013371	NP_037503	Q9UHD0	IL19_HUMAN	interleukin 19 isoform 2 precursor	87					apoptosis|immune response|signal transduction	extracellular space	cytokine activity			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(75;0.211)			GTTCTACGTGGACAGGGTGTT	0.473													184	116					0	0	0.000781405	0	0
C4BPA	722	broad.mit.edu	37	1	207287488	207287488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:207287488G>A	uc001hfo.2	+	3	380	c.186G>A	c.(184-186)ATG>ATA	p.M62I		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	62	Sushi 1.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CTGCCCCGATGGATATTACGT	0.473													32	86					0	0	0.00058488	0	0
LAMB3	3914	broad.mit.edu	37	1	209796339	209796339	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:209796339C>T	uc001hhg.2	-	16	2934	c.2544G>A	c.(2542-2544)CGG>CGA	p.R848R	LAMB3_uc009xco.2_Silent_p.R848R|LAMB3_uc001hhh.2_Silent_p.R848R|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	848	Domain I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TCTGCCTGGTCCGCTGGAGCT	0.627													46	134					0	0	0.000781405	0	0
USH2A	7399	broad.mit.edu	37	1	215808037	215808037	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:215808037G>A	uc001hku.1	-	70	15448	c.15061C>T	c.(15061-15063)CTA>TTA	p.L5021L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5021	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGAGTTGTTAGGACCAAGCCT	0.443										HNSCC(13;0.011)			28	75					0	0	0.0024448	0	0
USH2A	7399	broad.mit.edu	37	1	216424377	216424377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:216424377C>T	uc001hku.1	-	12	2422	c.2035G>A	c.(2035-2037)GGA>AGA	p.G679R	USH2A_uc001hkv.2_Missense_Mutation_p.G679R	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	679	Extracellular (Potential).|Laminin EGF-like 3.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGTAGAATCCATTCTGGCAC	0.438										HNSCC(13;0.011)			17	30					0	0	0.00188189	0	0
SPATA17	128153	broad.mit.edu	37	1	217915317	217915317	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:217915317G>A	uc001hlh.1	+	6	422	c.396G>A	c.(394-396)AGG>AGA	p.R132R	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Silent_p.R132R	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	132						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		TTTGATGCAGGAAGGCACTGG	0.388													17	52					0	0	0.000958276	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220379279	220379279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:220379279G>A	uc010puk.1	-	8	846	c.682C>T	c.(682-684)CTT>TTT	p.L228F	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_5'UTR	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	228					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		CAAGCACGAAGAGATTGAAAA	0.303													14	36					0	0	0.00121646	0	0
DISP1	84976	broad.mit.edu	37	1	223176378	223176378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:223176378C>T	uc001hnu.1	+	8	1786	c.1639C>T	c.(1639-1641)CGT>TGT	p.R547C		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	547	SSD.				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TTTTCTCTATCGTGTAGTATT	0.358													211	595					0	0	0.000781405	0	0
ENAH	55740	broad.mit.edu	37	1	225702311	225702311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:225702311C>T	uc001hpc.1	-	7	1658	c.1205G>A	c.(1204-1206)AGG>AAG	p.R402K	ENAH_uc001hpd.1_Missense_Mutation_p.R402K|ENAH_uc001hpb.1_Missense_Mutation_p.R21K	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	402	EVH2.|KLKR.|EVH2 block A.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding	p.R402R(1)		ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		TGACACTTTCCTAAGTTTTGC	0.313													23	62					0	0	0.00278032	0	0
LIN9	286826	broad.mit.edu	37	1	226421046	226421046	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:226421046T>C	uc001hqa.2	-	13	1782	c.1472A>G	c.(1471-1473)AAG>AGG	p.K491R	LIN9_uc001hqb.2_Missense_Mutation_p.K456R|LIN9_uc001hqc.2_Missense_Mutation_p.K423R|LIN9_uc009xel.1_Missense_Mutation_p.K456R	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	475					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		AAGATTTACCTTAATTTGTAA	0.323													89	82					0	0	0.000781405	0	0
WNT3A	89780	broad.mit.edu	37	1	228246896	228246896	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:228246896C>T	uc001hrq.1	+	4	867	c.789C>T	c.(787-789)TTC>TTT	p.F263F	WNT3A_uc001hrp.1_Silent_p.F263F	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	263					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				ACACCTACTTCAAGGTGCCCA	0.667													7	27					0	0	0.00198382	0	0
OBSCN	84033	broad.mit.edu	37	1	228505743	228505743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:228505743G>A	uc009xez.1	+	53	14044	c.14000G>A	c.(13999-14001)GGG>GAG	p.G4667E	OBSCN_uc001hsn.2_Missense_Mutation_p.G4667E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4667	Ig-like 47.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGCCCGGTGGGCGGTTCGAG	0.627													48	129					0	0	0.000781405	0	0
OBSCN	84033	broad.mit.edu	37	1	228565642	228565642	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:228565642C>T	uc009xez.1	+	103	23558	c.23514C>T	c.(23512-23514)CTC>CTT	p.L7838L	OBSCN_uc001hsr.1_Silent_p.L2467L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7838	Protein kinase 2.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CTCCAGAGCTCCTGGAGGGCC	0.622													10	33					0	0	0.00136819	0	0
GALNT2	2590	broad.mit.edu	37	1	230338945	230338946	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:230338945_230338946GG>AA	uc010pwa.1	+	3	355_356	c.283_284GG>AA	c.(283-285)GGG>AAG	p.G95K	GALNT2_uc010pvy.1_Missense_Mutation_p.G57K|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	95	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				GGTCCGCTCCGGGCAGGACCCT	0.545													36	108					0	0	6.4e-05	0	0
KIAA1383	54627	broad.mit.edu	37	1	232941695	232941695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:232941695G>A	uc001hvh.2	+	1	1058	c.926G>A	c.(925-927)CGA>CAA	p.R309Q		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	167										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				CTGCATAATCGAGTGGGCGAG	0.687													5	21					0	0	0.00198382	0	0
KIAA1804	84451	broad.mit.edu	37	1	233482261	233482261	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:233482261G>A	uc001hvt.3	+	2	1140	c.879G>A	c.(877-879)GCG>GCA	p.A293A	KIAA1804_uc001hvs.1_Silent_p.A293A	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	293	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TTGGGTTGGCGAGGGAATGGC	0.428													17	35					0	0	0.000958276	0	0
SLC35F3	148641	broad.mit.edu	37	1	234455867	234455867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:234455867G>A	uc001hwa.1	+	6	1192	c.964G>A	c.(964-966)GGA>AGA	p.G322R	SLC35F3_uc001hvy.1_Missense_Mutation_p.G391R	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	322	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			ATTAAATTTTGGAATTGCCGT	0.403													20	87					0	0	0.00278032	0	0
TARBP1	6894	broad.mit.edu	37	1	234565323	234565323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:234565323G>A	uc001hwd.2	-	16	2710	c.2710C>T	c.(2710-2712)CAC>TAC	p.H904Y		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	904					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			ATAAGGGTGTGATATTTTTTC	0.433													38	86					0	0	0.00195071	0	0
RYR2	6262	broad.mit.edu	37	1	237969530	237969530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:237969530G>A	uc001hyl.1	+	99	14365	c.14245G>A	c.(14245-14247)GGA>AGA	p.G4749R	RYR2_uc010pyb.1_Missense_Mutation_p.G182R	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4749					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATTGCTATGGGATTCAAGAC	0.383													31	107					0	0	0.00058488	0	0
RYR2	6262	broad.mit.edu	37	1	237982410	237982410	+	Silent	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:237982410A>T	uc001hyl.1	+	101	14628	c.14508A>T	c.(14506-14508)GGA>GGT	p.G4836G	RYR2_uc010pyb.1_Silent_p.G269G	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4836					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACCCAGCAGGAGATGAATATG	0.413													41	95					0	0	0.00148497	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358													14	55					0	0	0.00074312	0	0
NLRP3	114548	broad.mit.edu	37	1	247587996	247587996	+	Silent	SNP	C	T	T	rs139852370		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:247587996C>T	uc001icr.2	+	5	1389	c.1251C>T	c.(1249-1251)ATC>ATT	p.I417I	NLRP3_uc001ics.2_Silent_p.I417I|NLRP3_uc001icu.2_Silent_p.I417I|NLRP3_uc001icw.2_Silent_p.I417I|NLRP3_uc001icv.2_Silent_p.I417I|NLRP3_uc010pyw.1_Silent_p.I415I|NLRP3_uc001ict.1_Silent_p.I415I	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	417	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCTGCTGGATCGTGTGCACTG	0.552													20	62					0	0	0.00188189	0	0
NLRP3	114548	broad.mit.edu	37	1	247607377	247607377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:247607377G>A	uc001icr.2	+	9	2911	c.2773G>A	c.(2773-2775)GGA>AGA	p.G925R	NLRP3_uc001ics.2_Missense_Mutation_p.G868R|NLRP3_uc001icu.2_Missense_Mutation_p.G925R|NLRP3_uc001icw.2_Missense_Mutation_p.G868R|NLRP3_uc001icv.2_Missense_Mutation_p.G811R|NLRP3_uc010pyw.1_Missense_Mutation_p.G903R	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	925	LRR 7.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CAACACTCTCGGAGACAAGGG	0.493													24	55					0	0	0.00106085	0	0
OR2G3	81469	broad.mit.edu	37	1	247769751	247769751	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:247769751C>T	uc010pyz.1	+	1	864	c.864C>T	c.(862-864)ATC>ATT	p.I288I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TAAATCCTATCATCTATACTT	0.418													24	74					0	0	0.000878237	0	0
OR2L8	391190	broad.mit.edu	37	1	248112855	248112855	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248112855G>A	uc001idt.1	+	1	696	c.696G>A	c.(694-696)GGG>GGA	p.G232G	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CTGCAGAAGGGAGGAAGAAAG	0.448													21	59					0	0	0.00278032	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129595	248129595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248129595G>A	uc010pzd.1	+	1	962	c.962G>A	c.(961-963)GGA>GAA	p.G321E	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	321	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			AGACTGTTGGGATATTGGATA	0.398													20	56					0	0	0.00278032	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153712	248153712	+	Translation_Start_Site	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248153712C>G	uc001idv.1	+	1	144	c.-100C>G	c.(-102--98)ATCTT>ATGTT		OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						TTCTTCTCATCTTCTTGGACA	0.388													57	198					0	0	0.000781405	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285833	248285833	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248285833C>T	uc001idy.1	+	1	396	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						AGGTTATTTTCATTTGCTCTA	0.423													40	112					0	0	0.00128727	0	0
OR2M3	127062	broad.mit.edu	37	1	248366844	248366844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248366844G>A	uc010pzg.1	+	1	475	c.475G>A	c.(475-477)GAT>AAT	p.D159N		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGGAATTATTGATGTTGTAGC	0.463													25	68					0	0	0.00047179	0	0
OR2T4	127074	broad.mit.edu	37	1	248525769	248525769	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248525769C>G	uc001ieh.1	+	1	887	c.887C>G	c.(886-888)TCC>TGC	p.S296C		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	296	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCCCCAGCTCCTACCACACC	0.517													64	55					0	0	0.000781405	0	0
OR2T1	26696	broad.mit.edu	37	1	248570329	248570329	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248570329A>C	uc010pzm.1	+	1	1034	c.1034A>C	c.(1033-1035)AAG>ACG	p.K345T		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	345	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTTAGAAACAAGGATGTGACT	0.512													42	43					0	0	0.000781405	0	0
OR2T27	403239	broad.mit.edu	37	1	248813307	248813307	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:248813307C>T	uc010pzo.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATCCTTGTTCCTAAGGCTGT	0.483													26	61					0	0	0.00127121	0	0
CALML3	810	broad.mit.edu	37	10	5567221	5567221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:5567221G>A	uc001iie.1	+	1	298	c.173G>A	c.(172-174)CGG>CAG	p.R58Q	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	58	EF-hand 2.|2.						calcium ion binding				0						GAGATCGACCGGGACGGCAAC	0.662													10	15					0	0	0.00136819	0	0
C10orf18	54906	broad.mit.edu	37	10	5789846	5789847	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:5789846_5789847GG>AA	uc001iij.2	+	15	5087_5088	c.4462_4463GG>AA	c.(4462-4464)GGA>AAA	p.G1488K	C10orf18_uc001iik.2_Missense_Mutation_p.G332K	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	1488										ovary(1)|central_nervous_system(1)	2						TGATCATCCAGGAAGAACAGGT	0.441													15	16					0	0	6.4e-05	0	0
CCDC3	83643	broad.mit.edu	37	10	12940443	12940443	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:12940443G>A	uc001ilq.1	-	3	920	c.786C>T	c.(784-786)CCC>CCT	p.P262P	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	262						endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			GGGGGCGCACGGGCCCCCGGG	0.667													23	23					0	0	0.00047179	0	0
SLC39A12	221074	broad.mit.edu	37	10	18280159	18280159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:18280159G>A	uc001ipo.2	+	8	1622	c.1349G>A	c.(1348-1350)GGA>GAA	p.G450E	SLC39A12_uc001ipn.2_Missense_Mutation_p.G450E|SLC39A12_uc001ipp.2_Missense_Mutation_p.G450E|SLC39A12_uc010qck.1_Missense_Mutation_p.G316E	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	450	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						AAACTGATGGGATTAATTGGA	0.333													44	59					0	0	0.00222228	0	0
PLXDC2	84898	broad.mit.edu	37	10	20453417	20453417	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:20453417G>A	uc001iqg.1	+	7	1441	c.804G>A	c.(802-804)CAG>CAA	p.Q268Q	PLXDC2_uc001iqh.1_Silent_p.Q219Q|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	268	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TGGTCACACAGATAAGTTCAA	0.423													10	20					0	0	0.000978159	0	0
DNAJC1	64215	broad.mit.edu	37	10	22048376	22048376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:22048376G>A	uc001irc.2	-	11	1606	c.1319C>T	c.(1318-1320)GCC>GTC	p.A440V	DNAJC1_uc001ird.2_Missense_Mutation_p.A326V	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 1	440	Cytoplasmic (By similarity).				negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			lung(1)	1		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				CCGAGGCCGGGCATCAGTGGC	0.657													19	31					0	0	0.00152264	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762301	24762301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:24762301C>T	uc001iru.3	+	6	1394	c.991C>T	c.(991-993)CCT>TCT	p.P331S	KIAA1217_uc001irs.2_Missense_Mutation_p.P251S|KIAA1217_uc001irt.3_Missense_Mutation_p.P331S|KIAA1217_uc010qcy.1_Missense_Mutation_p.P331S|KIAA1217_uc010qcz.1_Missense_Mutation_p.P331S|KIAA1217_uc001irv.1_Missense_Mutation_p.P181S|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.P49S|KIAA1217_uc001irz.2_Missense_Mutation_p.P49S|KIAA1217_uc001irx.2_Missense_Mutation_p.P49S|KIAA1217_uc001iry.2_Missense_Mutation_p.P49S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	331	Pro-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GTCCAGAATTCCTTATGGGGG	0.612													14	32					0	0	0.00185496	0	0
SVIL	6840	broad.mit.edu	37	10	29815923	29815923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:29815923G>A	uc001iut.1	-	13	3062	c.2309C>T	c.(2308-2310)CCC>CTC	p.P770L	SVIL_uc001iuu.1_Intron	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	770					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				AGCTACAGTGGGGCTAGGAAG	0.537													14	28					0	0	0.000308642	0	0
SVIL	6840	broad.mit.edu	37	10	29839933	29839933	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:29839933C>T	uc001iut.1	-	6	1173	c.420G>A	c.(418-420)AGG>AGA	p.R140R	SVIL_uc001iuu.1_Silent_p.R140R|SVIL_uc009xld.1_Silent_p.R140R	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	140	Interaction with MYLK (By similarity).				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				CAGGCTCCTTCCTGGACTTGG	0.542													21	43					0	0	0.00152264	0	0
KIAA1462	57608	broad.mit.edu	37	10	30336558	30336558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:30336558C>T	uc001iux.2	-	1	243	c.184G>A	c.(184-186)GGG>AGG	p.G62R	KIAA1462_uc001iuy.2_Missense_Mutation_p.G62R|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Missense_Mutation_p.G62R	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	62										ovary(4)	4						TGTCCTTTCCCCGCGGACGTC	0.677													15	23					0	0	0.00244969	0	0
LOC441666	441666	broad.mit.edu	37	10	42832134	42832134	+	RNA	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:42832134T>C	uc010qey.1	-	3		c.1841A>G				NR_024380				Homo sapiens noncoding mRNA sequence.												0						TTGCCACATTTTTCACAATTG	0.353													5	4					0	0	0.000602214	0	0
SYT15	83849	broad.mit.edu	37	10	46967612	46967612	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:46967612C>T	uc001jea.2	-	4	618	c.465G>A	c.(463-465)GTG>GTA	p.V155V	SYT15_uc001jdz.2_Silent_p.V155V|SYT15_uc001jeb.2_Silent_p.V33V|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	155	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						GCTCATATTCCACCGAGAACC	0.627													11	43					0	0	0.000673444	0	0
SYT15	83849	broad.mit.edu	37	10	46968620	46968620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:46968620C>T	uc001jea.2	-	3	469	c.316G>A	c.(316-318)GCA>ACA	p.A106T	SYT15_uc001jdz.2_Missense_Mutation_p.A106T|SYT15_uc001jeb.2_5'UTR|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	106	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						AGCTCTGATGCCGGGCAGGGG	0.667													6	20					0	0	0.00116845	0	0
PPYR1	5540	broad.mit.edu	37	10	47087528	47087528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:47087528C>T	uc001jee.2	+	3	1164	c.745C>T	c.(745-747)CAC>TAC	p.H249Y	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.H249Y	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	249	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GCGCGTGTTTCACAAGGGCAC	0.602													22	95					0	0	0.000878237	0	0
RBP3	5949	broad.mit.edu	37	10	48389177	48389177	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:48389177C>T	uc001jez.2	-	1	1815	c.1701G>A	c.(1699-1701)GAG>GAA	p.E567E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	567	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CCGCGGTGATCTCACCTACCA	0.667													15	26					0	0	0.000422831	0	0
GDF2	2658	broad.mit.edu	37	10	48416538	48416538	+	Silent	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:48416538G>C	uc001jfa.1	-	1	319	c.156C>G	c.(154-156)ACC>ACG	p.T52T		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	52					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						TCAGGTTGAAGGTGTGCTCAG	0.622													17	21					0	0	0.00121646	0	0
C10orf72	196740	broad.mit.edu	37	10	50315776	50315776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:50315776C>T	uc001jhf.2	-	2	349	c.320G>A	c.(319-321)GGG>GAG	p.G107E	C10orf72_uc001jhh.2_Missense_Mutation_p.G107E	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	107	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						GTAGAGCGCCCCCCGCTGCTC	0.602													35	46					0	0	0.000953801	0	0
DRGX	644168	broad.mit.edu	37	10	50599893	50599893	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:50599893G>A	uc010qgq.1	-	1	15	c.15C>T	c.(13-15)AGC>AGT	p.S5S		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	5					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTTGGTCACAGCTCATCAGCA	0.398													4	8					0	0	0.00024832	0	0
A1CF	29974	broad.mit.edu	37	10	52603882	52603882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:52603882C>T	uc001jjj.2	-	4	288	c.100G>A	c.(100-102)GAA>AAA	p.E34K	A1CF_uc010qhn.1_Missense_Mutation_p.E42K|A1CF_uc001jji.2_Missense_Mutation_p.E34K|A1CF_uc001jjh.2_Missense_Mutation_p.E42K|A1CF_uc010qho.1_Missense_Mutation_p.E42K|A1CF_uc009xov.2_Missense_Mutation_p.E34K|A1CF_uc001jjk.1_Missense_Mutation_p.E34K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	34					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TGTCCATTTTCCTGCAAATCC	0.413													18	29					0	0	0.00278032	0	0
MBL2	4153	broad.mit.edu	37	10	54531404	54531404	+	Translation_Start_Site	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:54531404C>T	uc001jjt.2	-	1	57	c.-8G>A	c.(-10--6)AGGTG>AGATG			NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor						acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						ATGGTCCTCACCTTGGTGTGA	0.478													6	7					0	0	0.000157383	0	0
JMJD1C	221037	broad.mit.edu	37	10	64974730	64974730	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:64974730A>T	uc001jmn.2	-	8	1497	c.1197T>A	c.(1195-1197)AAT>AAA	p.N399K	JMJD1C_uc001jml.2_Missense_Mutation_p.N180K|JMJD1C_uc001jmm.2_Missense_Mutation_p.N111K|JMJD1C_uc010qiq.1_Missense_Mutation_p.N217K|JMJD1C_uc009xpi.2_Missense_Mutation_p.N217K|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Missense_Mutation_p.N111K	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	399					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TTTTCAATTCATTCTCTGGCT	0.348													27	42					0	0	0.000586117	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687037	68687037	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:68687037C>T	uc001jmz.1	+	2	913	c.363C>T	c.(361-363)ATC>ATT	p.I121I	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Silent_p.I121I	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	121	LRR 3.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCAATAGAATCTCCTATTTTC	0.393													53	78					0	0	0.000781405	0	0
MYPN	84665	broad.mit.edu	37	10	69918341	69918341	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:69918341G>A	uc001jnm.3	+	8	1601	c.1416G>A	c.(1414-1416)GGG>GGA	p.G472G	MYPN_uc001jnl.1_Silent_p.G472G|MYPN_uc001jnn.3_Silent_p.G197G|MYPN_uc001jno.3_Silent_p.G472G|MYPN_uc001jnp.1_Silent_p.G472G|MYPN_uc009xps.2_Silent_p.G472G|MYPN_uc009xpt.2_Silent_p.G472G|MYPN_uc010qit.1_Silent_p.G178G|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	472	Interaction with CARP.|Ig-like 2.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						ATAGAGAAGGGACTTTAATAG	0.328													28	43					0	0	0.00106085	0	0
HKDC1	80201	broad.mit.edu	37	10	70998811	70998811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:70998811C>T	uc001jpf.3	+	5	642	c.509C>T	c.(508-510)TCG>TTG	p.S170L	HKDC1_uc010qje.1_Missense_Mutation_p.S33L	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	170	Glucose-binding (Potential).				glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						GTCCTACTTTCGTGGACAAAA	0.498													15	35					0	0	0.000422831	0	0
UNC5B	219699	broad.mit.edu	37	10	73056340	73056340	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:73056340C>T	uc001jro.2	+	15	2776	c.2331C>T	c.(2329-2331)ATC>ATT	p.I777I	UNC5B_uc001jrp.2_Silent_p.I766I	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	777	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						TGCAGGAGATCCCCTTCTATC	0.607													8	12					0	0	0.000157383	0	0
CDH23	64072	broad.mit.edu	37	10	73551085	73551085	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:73551085C>T	uc001jrx.3	+	45	6623	c.6246C>T	c.(6244-6246)TGC>TGT	p.C2082C		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2082	Cadherin 20.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TAGAGAACTGCCCGCCTGGTA	0.622													10	4					0	0	0.000978159	0	0
TTC18	118491	broad.mit.edu	37	10	75035313	75035313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:75035313C>T	uc009xrc.2	-	23	2895	c.2774G>A	c.(2773-2775)GGA>GAA	p.G925E	TTC18_uc001jty.2_Missense_Mutation_p.G925E|TTC18_uc001jtv.3_Missense_Mutation_p.G29E|TTC18_uc001jtw.3_Missense_Mutation_p.G29E|TTC18_uc001jtx.2_Missense_Mutation_p.G306E	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	925							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					GCTGGGGCCTCCTTGAGGGCA	0.453													76	104					0	0	0.000781405	0	0
TTC18	118491	broad.mit.edu	37	10	75082781	75082781	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:75082781C>T	uc009xrc.2	-	10	1183	c.1062G>A	c.(1060-1062)GTG>GTA	p.V354V	TTC18_uc001jty.2_Silent_p.V354V|TTC18_uc009xrd.1_Silent_p.V162V	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	354							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					GAATTCTCTTCACACCTGGAT	0.373													26	45					0	0	0.00127121	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407493	75407493	+	Silent	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:75407493C>A	uc001jut.3	-	4	2069	c.1917G>T	c.(1915-1917)CCG>CCT	p.P639P	SYNPO2L_uc001jus.3_Silent_p.P415P	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	639	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					CCTCCTTTCCCGGCCGGAACA	0.672													6	102					0.00198382	0.00805091	0.00198382	1	0
SEC24C	9632	broad.mit.edu	37	10	75530142	75530142	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:75530142C>T	uc001juw.2	+	22	3146	c.2967C>T	c.(2965-2967)CTC>CTT	p.L989L	SEC24C_uc001jux.2_Silent_p.L989L|SEC24C_uc010qko.1_Silent_p.L870L|SEC24C_uc010qkp.1_Silent_p.L237L|SEC24C_uc010qkq.1_Silent_p.L237L|FUT11_uc001juy.1_5'Flank|FUT11_uc001juz.1_5'Flank|FUT11_uc001jva.2_5'Flank	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	989					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					GGCTCAACCTCTTCCTCTGGG	0.532													109	189					0	0	0.000781405	0	0
KCNMA1	3778	broad.mit.edu	37	10	78944602	78944602	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:78944602G>A	uc001jxn.2	-	4	852	c.675C>T	c.(673-675)TTC>TTT	p.F225F	KCNMA1_uc001jxj.2_Silent_p.F225F|KCNMA1_uc001jxk.1_5'Flank|KCNMA1_uc009xrt.1_Silent_p.F45F|KCNMA1_uc001jxo.2_Silent_p.F225F|KCNMA1_uc001jxm.2_Silent_p.F225F|KCNMA1_uc001jxq.2_Silent_p.F225F	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	225	Helical; Name=Segment S2; (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	AGTAGAGAAGGAAGAACACGT	0.453													22	35					0	0	0.00047179	0	0
DLG5	9231	broad.mit.edu	37	10	79581859	79581859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:79581859C>T	uc001jzk.2	-	15	2453	c.2383G>A	c.(2383-2385)GTA>ATA	p.V795I	DLG5_uc001jzi.2_5'Flank|DLG5_uc001jzj.2_Intron|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.V399I	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	795	PDZ 2.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TGAGGGAATACCTAGGCAGGG	0.507													25	40					0	0	0.000586117	0	0
DYDC1	143241	broad.mit.edu	37	10	82098294	82098294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:82098294C>T	uc001kbx.2	-	7	598	c.433G>A	c.(433-435)GAA>AAA	p.E145K	DYDC1_uc001kby.1_Missense_Mutation_p.E145K|DYDC1_uc009xsr.1_Missense_Mutation_p.E145K	NM_138812	NP_620167	Q8WWB3	DYDC1_HUMAN	DPY30 domain containing 1	145											0			Colorectal(32;0.229)			TCGCTGATTTCAGCTAGTGTT	0.328													43	61					0	0	0.000781405	0	0
SH2D4B	387694	broad.mit.edu	37	10	82331326	82331326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:82331326G>A	uc001kck.1	+	3	917	c.487G>A	c.(487-489)GAA>AAA	p.E163K	SH2D4B_uc001kcl.1_Missense_Mutation_p.E114K	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	162	Glu-rich.										0			Colorectal(32;0.229)			CATCCACGAGGAATTCAAGGT	0.592													28	37					0	0	0.000814825	0	0
AGAP11	119385	broad.mit.edu	37	10	88769041	88769041	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:88769041G>A	uc001kee.2	+	12	2236	c.1032G>A	c.(1030-1032)GTG>GTA	p.V344V	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	344	C4-type.|Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CCCACTGCGTGGACTGTGAGA	0.542													60	128					0	0	0.000781405	0	0
IFIT2	3433	broad.mit.edu	37	10	91066303	91066303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:91066303C>T	uc009xts.2	+	2	765	c.590C>T	c.(589-591)CCT>CTT	p.P197L	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	197	TPR 3.				negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				GCCATTGACCCTCTGAGGCAA	0.507													18	32					0	0	0.000958276	0	0
IFIT1B	439996	broad.mit.edu	37	10	91144031	91144031	+	Silent	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:91144031T>C	uc001kgh.2	+	2	1041	c.961T>C	c.(961-963)TTG>CTG	p.L321L	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	321							binding				0						TGTGGACAGATTGGTTCAATT	0.428													32	44					0	0	0.0024448	0	0
KIF20B	9585	broad.mit.edu	37	10	91469688	91469688	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:91469688T>C	uc001kgs.1	+	5	428	c.356T>C	c.(355-357)TTT>TCT	p.F119S	KIF20B_uc001kgr.1_Missense_Mutation_p.F119S	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	119	Kinesin-motor.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						GCTTAGGTTTTTGGCCCAGCA	0.333													21	38					0	0	0.00188189	0	0
RBP4	5950	broad.mit.edu	37	10	95360193	95360193	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:95360193G>A	uc001kit.2	-	4	396	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_006744	NP_006735	P02753	RET4_HUMAN	retinol-binding protein 4, plasma precursor	104					cardiac muscle tissue development|embryonic organ morphogenesis|embryonic retina morphogenesis in camera-type eye|embryonic skeletal system development|female genitalia morphogenesis|gluconeogenesis|glucose homeostasis|heart trabecula formation|lung development|maintenance of gastrointestinal epithelium|negative regulation of cardiac muscle cell proliferation|positive regulation of immunoglobulin secretion|positive regulation of insulin secretion|response to retinoic acid|retinol metabolic process|urinary bladder development|uterus development|vagina development	extracellular space	protein binding|retinal binding|retinol binding				0		Colorectal(252;0.122)			Vitamin A(DB00162)	ACTTCATCTTGAACTTGGCAG	0.577													27	59					0	0	0.00058488	0	0
PLCE1	51196	broad.mit.edu	37	10	95791423	95791424	+	Missense_Mutation	DNP	AC	GT	GT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:95791423_95791424AC>GT	uc001kjk.2	+	2	1254_1255	c.620_621AC>GT	c.(619-621)AAC>AGT	p.N207S	PLCE1_uc010qnx.1_Missense_Mutation_p.N207S	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	207					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CTATCAGAAAACTTAATTTTAG	0.411													13	18					0	0	6.4e-05	0	0
DNTT	1791	broad.mit.edu	37	10	98092170	98092170	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:98092170G>A	uc001kmf.2	+	9	1346	c.1176G>A	c.(1174-1176)AGG>AGA	p.R392R	DNTT_uc001kmg.2_Silent_p.R392R	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	392	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		TGCCTAGCAGGAAGGTTGATG	0.423													30	57					0	0	0.001512	0	0
DNMBP	23268	broad.mit.edu	37	10	101643875	101643875	+	Missense_Mutation	SNP	T	C	C	rs116046885	by1000genomes	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:101643875T>C	uc001kqj.2	-	15	3982	c.3890A>G	c.(3889-3891)AAT>AGT	p.N1297S	DNMBP_uc010qpl.1_Missense_Mutation_p.N233S|DNMBP_uc001kqg.2_Missense_Mutation_p.N585S|DNMBP_uc001kqh.2_Missense_Mutation_p.N929S	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1297	SH3 5.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TTGAGCAGCATTGAAGTTCCG	0.517													40	44					0	0	0.00148497	0	0
LOC729020	729020	broad.mit.edu	37	10	105005966	105005966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:105005966G>A	uc009xxi.2	+	1	323	c.213G>A	c.(211-213)ATG>ATA	p.M71I	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	71					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						ACATGCACATGATGGTGTCCA	0.493													46	54					0	0	0.00285205	0	0
COL17A1	1308	broad.mit.edu	37	10	105797396	105797396	+	Missense_Mutation	SNP	C	T	T	rs147631156	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:105797396C>T	uc001kxr.2	-	46	3375	c.3206G>A	c.(3205-3207)CGG>CAG	p.R1069Q		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1069	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GGGCTTACTCCGTAAGTAGCT	0.602													27	44					0	0	0.001512	0	0
CCDC147	159686	broad.mit.edu	37	10	106153090	106153090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:106153090G>A	uc001kyh.2	+	11	1665	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	511	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TGGTTAGGATGAAATAACAGA	0.378													16	30					0	0	0.00074312	0	0
CCDC147	159686	broad.mit.edu	37	10	106153215	106153215	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:106153215G>A	uc001kyh.2	+	11	1790	c.1656G>A	c.(1654-1656)AAG>AAA	p.K552K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	552	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GAATAGAAAAGGAAAAGGAAA	0.473													10	10					0	0	0.000673444	0	0
SORCS3	22986	broad.mit.edu	37	10	106974284	106974284	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:106974284C>T	uc001kyi.1	+	18	2687	c.2460C>T	c.(2458-2460)GCC>GCT	p.A820A	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	820	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTGGAAAAGCCCCTCGGGGCC	0.567													12	27					0	0	0.000978159	0	0
HABP2	3026	broad.mit.edu	37	10	115334134	115334134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:115334134C>T	uc001lai.3	+	3	296	c.193C>T	c.(193-195)CCT>TCT	p.P65S	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Silent_p.I53I	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	65					cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		CGCTGAGAATCCTGACTGGTA	0.507													19	35					0	0	0.00188189	0	0
NHLRC2	374354	broad.mit.edu	37	10	115661517	115661517	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:115661517A>G	uc001lax.1	+	7	1444	c.1232A>G	c.(1231-1233)CAA>CGA	p.Q411R	NHLRC2_uc001lay.1_RNA	NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	411	NHL 4.				cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		GGTTTTGCCCAACCTTCAGGC	0.458													48	110					0	0	0.000781405	0	0
KCNK18	338567	broad.mit.edu	37	10	118969168	118969168	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:118969168C>T	uc010qsr.1	+	3	513	c.513C>T	c.(511-513)TTC>TTT	p.F171F		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	171	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		AATTCCCTTTCTTTACCCGCC	0.502													36	57					0	0	0.00058488	0	0
PDZD8	118987	broad.mit.edu	37	10	119044446	119044446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:119044446G>A	uc001lde.1	-	5	1997	c.1798C>T	c.(1798-1800)CCT>TCT	p.P600S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	600	Pro-rich.				intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		GAAGGCAAAGGAACTTTCGCT	0.488													54	83					0	0	0.000781405	0	0
C10orf88	80007	broad.mit.edu	37	10	124711494	124711494	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:124711494G>A	uc001lgw.2	-	3	642	c.417C>T	c.(415-417)TCC>TCT	p.S139S	C10orf88_uc001lgx.2_Silent_p.S41S	NM_024942	NP_079218	Q9H8K7	CJ088_HUMAN	hypothetical protein LOC80007	139											0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0735)		CATGTGTGGAGGACTCCAATT	0.244													16	28					0	0	0.00074312	0	0
HMX3	340784	broad.mit.edu	37	10	124896586	124896587	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:124896586_124896587CC>TT	uc010quc.1	+	2	413_414	c.413_414CC>TT	c.(412-414)GCC>GTT	p.A138V		NM_001105574	NP_001099044	A6NHT5	HMX3_HUMAN	H6 family homeobox 3	138					cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.122)|COAD - Colon adenocarcinoma(40;0.141)		TCGGAGAAGGCCTTGCTGAGAG	0.673													7	4					0	0	6.4e-05	0	0
PTPRE	5791	broad.mit.edu	37	10	129846043	129846043	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr10:129846043G>A	uc001lkb.2	+	5	504	c.225G>A	c.(223-225)AGG>AGA	p.R75R	PTPRE_uc009yat.2_Silent_p.R86R|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.R75R|PTPRE_uc001lkc.1_RNA|PTPRE_uc001lkd.2_Silent_p.R17R|PTPRE_uc010quq.1_5'Flank	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	75	Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				GGAAGCAGAGGAAAGCTGTGG	0.552													22	34					0	0	0.00278032	0	0
PSMD13	5719	broad.mit.edu	37	11	244428	244428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:244428C>T	uc001lol.2	+	5	510	c.268C>T	c.(268-270)CCT>TCT	p.P90S	PSMD13_uc010qvr.1_RNA|PSMD13_uc001loo.2_Missense_Mutation_p.P92S|PSMD13_uc001lon.2_Missense_Mutation_p.P25S|PSMD13_uc001lom.2_Missense_Mutation_p.P65S	NM_002817	NP_002808	Q9UNM6	PSD13_HUMAN	proteasome 26S non-ATPase subunit 13 isoform 1	90					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding			ovary(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.79e-27)|Epithelial(43;4e-26)|OV - Ovarian serous cystadenocarcinoma(40;6.02e-21)|BRCA - Breast invasive adenocarcinoma(625;3.93e-05)|Lung(200;0.112)|LUSC - Lung squamous cell carcinoma(625;0.129)		TTTTCCAGATCCTAATGTGGC	0.398													21	34					0	0	0.00278032	0	0
B4GALNT4	338707	broad.mit.edu	37	11	380832	380832	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:380832G>A	uc001lpb.2	+	19	2886	c.2877G>A	c.(2875-2877)TGG>TGA	p.W959*		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	959	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CAGGTTACTGGGAGGTGAACG	0.622													17	27					0	0	0.00188189	0	0
MUC2	4583	broad.mit.edu	37	11	1096475	1096475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:1096475C>T	uc001lsx.1	+	37	13613	c.13586C>T	c.(13585-13587)CCC>CTC	p.P4529L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4529	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CACTGCGATCCCAACGACAAG	0.577													26	41					0	0	0.00127121	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643030	1643030	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:1643030C>T	uc009ycy.1	-	3	519	c.432G>A	c.(430-432)AAG>AAA	p.K144K		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	158	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CACAGCCCCCCTTGGAACCCC	0.682													8	51					0	0	0.000274275	0	0
OR52I2	143502	broad.mit.edu	37	11	4608408	4608408	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:4608408C>T	uc010qyh.1	+	1	366	c.366C>T	c.(364-366)ATC>ATT	p.I122I		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	122	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGCTCAATCAGCTTTAGTG	0.502													21	39					0	0	0.00188189	0	0
OR52R1	119695	broad.mit.edu	37	11	4825415	4825415	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:4825415G>A	uc010qym.1	-	1	433	c.433C>T	c.(433-435)CTG>TTG	p.L145L		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGCATGGCCAGAAAGAGGTAC	0.498													9	21					0	0	0.000274275	0	0
OR51F2	119694	broad.mit.edu	37	11	4842988	4842988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:4842988G>A	uc010qyn.1	+	1	373	c.373G>A	c.(373-375)GAG>AAG	p.E125K		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	125	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TACTTTCATGGAGTCTGGGGT	0.463													29	39					0	0	0.001512	0	0
OR51G2	81282	broad.mit.edu	37	11	4936324	4936324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:4936324C>T	uc001lzr.1	-	1	570	c.570G>A	c.(568-570)ATG>ATA	p.M190I		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGGCCAATTTCATCACTTCTT	0.448													8	18					0	0	0.000157383	0	0
OR51A2	401667	broad.mit.edu	37	11	4976492	4976492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:4976492G>A	uc010qyt.1	-	1	452	c.452C>T	c.(451-453)TCC>TTC	p.S151F		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTCTTAAAGGAGAATACTAT	0.423													66	24					0	0	0.000781405	0	0
OR51L1	119682	broad.mit.edu	37	11	5020311	5020311	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:5020311C>T	uc010qyu.1	+	1	99	c.99C>T	c.(97-99)TTC>TTT	p.F33F		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCATCCTCTTCTGTCTTGCAT	0.428													31	46					0	0	0.00058488	0	0
OR51I1	390063	broad.mit.edu	37	11	5462122	5462122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:5462122G>A	uc010qze.1	-	1	623	c.623C>T	c.(622-624)ACC>ATC	p.T208I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATACCATAGGTAAAAATGAT	0.453													6	6					0	0	0.00116845	0	0
OR52D1	390066	broad.mit.edu	37	11	5510206	5510206	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:5510206C>T	uc010qzg.1	+	1	270	c.270C>T	c.(268-270)CTC>CTT	p.L90L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTTGTGGCTCCATGCTGGTG	0.502													13	12					0	0	0.00136819	0	0
CNGA4	1262	broad.mit.edu	37	11	6262735	6262735	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:6262735G>C	uc001mco.2	+	5	1099	c.992G>C	c.(991-993)CGG>CCG	p.R331P	CNGA4_uc010raa.1_Missense_Mutation_p.R100P|CNGA4_uc001mcn.2_Missense_Mutation_p.R291P	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	331	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGCGGCTGCGGGCAGAAGTG	0.562													4	77					0	0	0.00024832	0	0
CCKBR	887	broad.mit.edu	37	11	6292321	6292321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:6292321C>T	uc001mcp.2	+	5	1085	c.892C>T	c.(892-894)CCA>TCA	p.P298S	CCKBR_uc001mcq.2_Missense_Mutation_p.P226S|CCKBR_uc001mcr.2_Missense_Mutation_p.P298S|CCKBR_uc001mcs.2_Missense_Mutation_p.P367S|CCKBR_uc001mct.1_RNA	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	298	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	CGTGCAACTTCCACGTTCCCG	0.687													31	61					0	0	0.00283554	0	0
TRIM3	10612	broad.mit.edu	37	11	6477915	6477915	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:6477915G>A	uc001mdh.2	-	7	1428	c.1041C>T	c.(1039-1041)ACC>ACT	p.T347T	TRIM3_uc001mdi.2_Silent_p.T347T|TRIM3_uc010raj.1_Silent_p.T228T|TRIM3_uc009yfd.2_Silent_p.T347T|TRIM3_uc010rak.1_Silent_p.T347T|TRIM3_uc001mdj.2_Silent_p.T228T	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	347	Filamin.			T -> A (in Ref. 1; AAC24809 and 2; AAG53474/AAG53475/AAG53476).	nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTTGTCTTTGGTAGTGACAG	0.687													25	27					0	0	0.0024448	0	0
OR10A5	144124	broad.mit.edu	37	11	6866924	6866924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:6866924G>A	uc001met.1	+	1	11	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATGGCTATAGGAAACTGGACA	0.383													46	68					0	0	0.000781405	0	0
STK33	65975	broad.mit.edu	37	11	8486300	8486300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:8486300C>T	uc001mgi.1	-	3	1328	c.409G>A	c.(409-411)GAA>AAA	p.E137K	STK33_uc001mgj.1_Missense_Mutation_p.E137K|STK33_uc001mgk.1_Missense_Mutation_p.E137K|STK33_uc010rbn.1_Missense_Mutation_p.E96K|STK33_uc001mgl.3_5'UTR|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	137	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GTTTCTGTTTCCTTGTCTGTC	0.408													27	57					0	0	0.00283554	0	0
CTR9	9646	broad.mit.edu	37	11	10772987	10772987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:10772987C>T	uc001mja.2	+	1	177	c.28C>T	c.(28-30)CTC>TTC	p.L10F		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	10					histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		CGAGATTCCCCTCCGGGACAC	0.617													9	18					0	0	0.000442599	0	0
CYP2R1	120227	broad.mit.edu	37	11	14913746	14913747	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:14913746_14913747CC>TT	uc001mlr.2	-	1	5_6	c.5_6GG>AA	c.(4-6)TGG>TAA	p.W2*	CYP2R1_uc001mlo.2_5'Flank|CYP2R1_uc001mlp.2_5'Flank|CYP2R1_uc001mlq.2_5'Flank	NM_024514	NP_078790	Q6VVX0	CP2R1_HUMAN	cytochrome P450, family 2, subfamily R,	2					hormone biosynthetic process|vitamin D metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding|vitamin D3 25-hydroxylase activity			ovary(1)|central_nervous_system(1)	2					Cholecalciferol(DB00169)|Ergocalciferol(DB00153)	TCCAAAGCTTCCACATCGGCCC	0.673													6	16					0	0	6.4e-05	0	0
NUCB2	4925	broad.mit.edu	37	11	17316984	17316984	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:17316984C>T	uc001mmw.2	+	3	359	c.114C>T	c.(112-114)CAC>CAT	p.H38H	NUCB2_uc001mms.1_Silent_p.H39H|NUCB2_uc001mmt.1_Silent_p.H38H|NUCB2_uc009ygw.1_RNA|NUCB2_uc001mmv.1_Silent_p.H38H|NUCB2_uc009ygx.1_RNA|NUCB2_uc009ygy.1_Silent_p.H38H|NUCB2_uc009ygz.2_Silent_p.H38H	NM_005013	NP_005004	P80303	NUCB2_HUMAN	nucleobindin 2 precursor	38						cytosol|ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|plasma membrane	calcium ion binding|DNA binding				0						AAAATATTCACCCTGTGGAAA	0.264													73	100					0	0	0.000781405	0	0
ABCC8	6833	broad.mit.edu	37	11	17430031	17430031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:17430031C>T	uc001mnc.2	-	23	2854	c.2728G>A	c.(2728-2730)GAG>AAG	p.E910K		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	910	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AGGGTACCCTCCCTCTGGATG	0.547													116	142					0	0	0.000781405	0	0
ABCC8	6833	broad.mit.edu	37	11	17470120	17470120	+	Silent	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:17470120G>T	uc001mnc.2	-	8	1401	c.1275C>A	c.(1273-1275)ACC>ACA	p.T425T	ABCC8_uc010rcy.1_Silent_p.T424T	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	425	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGAGCTGATTGGTGTCGATGG	0.502													14	427					0.00244969	0.00992093	0.00244969	1	0
PTPN5	84867	broad.mit.edu	37	11	18765740	18765740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:18765740G>A	uc001mpd.2	-	4	535	c.104C>T	c.(103-105)CCC>CTC	p.P35L	PTPN5_uc001mpb.2_Missense_Mutation_p.P35L|PTPN5_uc001mpc.2_Missense_Mutation_p.P35L|PTPN5_uc001mpe.2_Missense_Mutation_p.P35L|PTPN5_uc010rdj.1_Missense_Mutation_p.P11L|PTPN5_uc001mpf.2_Missense_Mutation_p.P11L|PTPN5_uc010rdk.1_Intron	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	35						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TATCGGCTGGGGGAGACCTGT	0.657													28	59					0	0	0.00106085	0	0
KIF18A	81930	broad.mit.edu	37	11	28113042	28113042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:28113042G>A	uc001msc.2	-	4	684	c.502C>T	c.(502-504)CGT>TGT	p.R168C		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	168	Kinesin-motor.				blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						AAGAGATCACGAATCTGTTCA	0.348													40	48					0	0	0.00195071	0	0
CCDC73	493860	broad.mit.edu	37	11	32635300	32635300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:32635300C>T	uc001mtv.2	-	16	2608	c.2564G>A	c.(2563-2565)GGA>GAA	p.G855E		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	855										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					GAACATTTTTCCTGAAACAAT	0.348													38	69					0	0	0.00128727	0	0
CCDC73	493860	broad.mit.edu	37	11	32705120	32705120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:32705120C>T	uc001mtv.2	-	7	435	c.391G>A	c.(391-393)GTT>ATT	p.V131I	CCDC73_uc001mtw.1_Missense_Mutation_p.V131I|CCDC73_uc009yjt.2_Missense_Mutation_p.V131I	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	131	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TATTTAGAAACCTTGAAAAAT	0.323													13	31					0	0	0.000308642	0	0
RAG1	5896	broad.mit.edu	37	11	36595095	36595095	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:36595095T>G	uc001mwu.3	+	2	365	c.241T>G	c.(241-243)TTA>GTA	p.L81V	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	81	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TCAGCCATTGTTAAAAGCCCA	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				46	65					0	0	0.000781405	0	0
CHRM4	1132	broad.mit.edu	37	11	46407402	46407402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:46407402C>T	uc001nct.1	-	1	706	c.706G>A	c.(706-708)GAG>AAG	p.E236K		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	236	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	GCTTTCTTCTCCTTCGGGCCC	0.637													8	6					0	0	0.000157383	0	0
AMBRA1	55626	broad.mit.edu	37	11	46534347	46534347	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:46534347A>G	uc010rgu.1	-	8	2449	c.2089T>C	c.(2089-2091)TCC>CCC	p.S697P	AMBRA1_uc010rgt.1_Missense_Mutation_p.S263P|AMBRA1_uc009ylc.1_Intron|AMBRA1_uc001ncu.1_Missense_Mutation_p.S607P|AMBRA1_uc001ncv.2_Missense_Mutation_p.S700P|AMBRA1_uc001ncw.2_Intron|AMBRA1_uc001ncx.2_Missense_Mutation_p.S697P	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	697					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GAAATGAGGGAAGATTCCAGC	0.443													40	60					0	0	0.000781405	0	0
MYBPC3	4607	broad.mit.edu	37	11	47374254	47374254	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:47374254G>A	uc001nfa.3	-	1	1	c.-54_splice	c.e1-1		SLC39A13_uc001nfd.2_5'Flank	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac						cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		AAGAGGGACTGAGTGGGGTCC	0.567													16	36					0	0	0.000422831	0	0
OR4X2	119764	broad.mit.edu	37	11	48267210	48267210	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:48267210C>T	uc001ngs.1	+	1	555	c.555C>T	c.(553-555)TTC>TTT	p.F185F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGACACCTTCCTCATTGGTC	0.483													48	77					0	0	0.000781405	0	0
OR4A47	403253	broad.mit.edu	37	11	48510571	48510571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:48510571C>T	uc010rhx.1	+	1	227	c.227C>T	c.(226-228)TCC>TTC	p.S76F		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCATCCATTTCCCCCAGATTG	0.423													18	44					0	0	0.000566183	0	0
OR4A47	403253	broad.mit.edu	37	11	48510798	48510798	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:48510798C>T	uc010rhx.1	+	1	454	c.454C>T	c.(454-456)CTG>TTG	p.L152L		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGAGGATTTCTGCACTCAGT	0.428													8	24					0	0	0.000274275	0	0
OR4C46	119749	broad.mit.edu	37	11	51515496	51515496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:51515496C>T	uc010ric.1	+	1	215	c.215C>T	c.(214-216)TCC>TTC	p.S72F		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	72	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCCTGCTATTCCTCTGTCAAT	0.473													38	65					0	0	0.00128727	0	0
OR4C16	219428	broad.mit.edu	37	11	55340152	55340152	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:55340152G>A	uc010rih.1	+	1	549	c.549G>A	c.(547-549)TTG>TTA	p.L183L		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				AGCCCTTGTTGAAACAAGCCT	0.438													24	45					0	0	0.00047179	0	0
OR4P4	81300	broad.mit.edu	37	11	55406121	55406121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:55406121G>A	uc010rij.1	+	1	288	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ATAACTGTATGATACAACTCT	0.448													31	43					0	0	0.00283554	0	0
OR4C6	219432	broad.mit.edu	37	11	55433041	55433041	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:55433041C>T	uc001nht.3	+	3	664	c.399C>T	c.(397-399)ATC>ATT	p.I133I	OR4C6_uc010rik.1_Silent_p.I133I	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						ACACGATCATCATGAGTCCAC	0.512													7	7					0	0	0.000157383	0	0
OR5D14	219436	broad.mit.edu	37	11	55563223	55563223	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:55563223C>T	uc010rim.1	+	1	192	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TGTACTTTTTCCTTAGTCACC	0.368													16	27					0	0	0.000566183	0	0
OR8H3	390152	broad.mit.edu	37	11	55890025	55890025	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:55890025C>T	uc001nii.1	+	1	177	c.177C>T	c.(175-177)CCC>CCT	p.P59P		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TTCACACTCCCATGTATTTTT	0.413													31	103					0	0	0.000953801	0	0
OR5R1	219479	broad.mit.edu	37	11	56185123	56185123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:56185123C>T	uc010rji.1	-	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATCAGAATTTCCTTCATGTGT	0.433													20	32					0	0	0.000958276	0	0
OR5M11	219487	broad.mit.edu	37	11	56310364	56310364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:56310364C>T	uc010rjl.1	-	1	370	c.370G>A	c.(370-372)GCC>ACC	p.A124T		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCATATATGGCCACATAGCGG	0.468													13	13					0	0	0.00185496	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757090	56757090	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:56757090G>A	uc010rjp.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTGCAGGAAGGAAAAAATCCT	0.423													24	41					0	0	0.00278032	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57070167	57070167	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:57070167C>G	uc001njr.2	-	6	4761	c.4449G>C	c.(4447-4449)GAG>GAC	p.E1483D	TNKS1BP1_uc001njp.2_Missense_Mutation_p.E55D|TNKS1BP1_uc001njq.2_Missense_Mutation_p.E55D|TNKS1BP1_uc001njs.2_Missense_Mutation_p.E1483D	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1483	Tankyrase-binding.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CTCCTTCCTCCTCCAACAGGC	0.711													6	10					0	0	0.000442599	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722282	58722282	+	Missense_Mutation	SNP	C	T	T	rs151204927		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:58722282C>T	uc001nnf.2	+	6	602	c.226C>T	c.(226-228)CGT>TGT	p.R76C	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.R107C|GLYATL1_uc001nni.1_Missense_Mutation_p.R76C|GLYATL1_uc001nnj.1_Missense_Mutation_p.R76C			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	76						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	AAACGTATATCGTATGTTCTC	0.383													21	35					0	0	0.00278032	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722804	58722804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:58722804C>T	uc001nnf.2	+	7	845	c.469C>T	c.(469-471)CAC>TAC	p.H157Y	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.H188Y|GLYATL1_uc001nni.1_Missense_Mutation_p.H157Y|GLYATL1_uc001nnj.1_Missense_Mutation_p.H157Y			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	157						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	TGAGACAGGCCACCCAGATGA	0.398													11	32					0	0	0.000978159	0	0
MS4A3	932	broad.mit.edu	37	11	59828728	59828728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:59828728C>T	uc001nom.2	+	2	223	c.95C>T	c.(94-96)TCT>TTT	p.S32F	MS4A3_uc001non.2_Missense_Mutation_p.S32F|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	32	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				CTGAATACTTCTGTCTACCAG	0.488													21	28					0	0	0.00121646	0	0
RPLP0P2	113157	broad.mit.edu	37	11	61405065	61405065	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:61405065C>G	uc001nrz.1	+	5	1669	c.914C>G	c.(913-915)TCG>TGG	p.S305W		NR_002775				SubName: Full=cDNA FLJ51469, highly similar to 60S acidic ribosomal protein P0;												0						AAGGAAGAGTCGGAGGGAGGA	0.378													19	39					0	0	0.00152264	0	0
FTH1	2495	broad.mit.edu	37	11	61732864	61732864	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:61732864G>A	uc001nsu.2	-	2	473	c.238C>T	c.(238-240)CGA>TGA	p.R80*		NM_002032	NP_002023	P02794	FRIH_HUMAN	ferritin, heavy polypeptide 1	80	Ferritin-like diiron.				cell proliferation|cellular membrane organization|immune response|intracellular sequestering of iron ion|iron ion transport|negative regulation of cell proliferation|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|ferroxidase activity|protein binding			ovary(1)	1					Iron Dextran(DB00893)	AGGAAGATTCGGCCACCTCGT	0.438													118	145					0	0	0.000781405	0	0
INCENP	3619	broad.mit.edu	37	11	61908274	61908274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:61908274C>T	uc001nsw.1	+	9	1644	c.1442C>T	c.(1441-1443)TCA>TTA	p.S481L	INCENP_uc009ynw.1_Missense_Mutation_p.S481L|INCENP_uc001nsx.1_Missense_Mutation_p.S481L	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	481					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						ACCCCTTCCTCACCCTGCCCA	0.667													15	17					0	0	0.00074312	0	0
AHNAK	79026	broad.mit.edu	37	11	62296332	62296332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:62296332G>A	uc001ntl.2	-	5	5857	c.5557C>T	c.(5557-5559)CCC>TCC	p.P1853S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1853					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GAGATCTTGGGGGCCTTGAAG	0.512													78	121					0	0	0.000781405	0	0
MTA2	9219	broad.mit.edu	37	11	62361997	62361997	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:62361997G>A	uc001ntq.1	-	16	2064	c.1683C>T	c.(1681-1683)GCC>GCT	p.A561A	TUT1_uc001nto.2_5'Flank|MTA2_uc010rlx.1_Silent_p.A388A	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	561					chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CAGTCTCATAGGCCCGTTTCA	0.547													35	31					0	0	0.00111076	0	0
SLC22A25	387601	broad.mit.edu	37	11	62997062	62997062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:62997062C>T	uc001nwr.1	-	1	63	c.63G>A	c.(61-63)ATG>ATA	p.M21I	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.M21I	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	21	Helical; Name=1; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TAAGGAAAACCATCTGAAGGA	0.463													8	35					0	0	0.000274275	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64137218	64137218	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:64137218C>T	uc001oae.2	+	14	1733	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I	RPS6KA4_uc001oad.2_Silent_p.I544I|RPS6KA4_uc010rnl.1_Silent_p.I487I|RPS6KA4_uc001oaf.2_Silent_p.I543I|RPS6KA4_uc009ypp.2_Intron	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	550	Protein kinase 2.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						TGAAAATCATCGACTTCGGGT	0.716													10	8					0	0	0.000442599	0	0
SLC22A12	116085	broad.mit.edu	37	11	64367873	64367873	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:64367873G>A	uc001oam.1	+	8	2067	c.1320G>A	c.(1318-1320)CTG>CTA	p.L440L	SLC22A12_uc001oal.1_Silent_p.L219L|SLC22A12_uc009yps.1_Silent_p.L406L|SLC22A12_uc001oan.1_Silent_p.L332L|SLC22A12_uc009ypt.2_Silent_p.L258L	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	440	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						TGGCCGTGCTGGGGCTGGGCG	0.642													8	14					0	0	0.000274275	0	0
RBM14	10432	broad.mit.edu	37	11	66393940	66393940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:66393940C>T	uc001oit.2	+	3	1950	c.1811C>T	c.(1810-1812)TCC>TTC	p.S604F	RBM14_uc009yrh.2_Missense_Mutation_p.P116S|RBM14_uc009yri.2_Missense_Mutation_p.P153S|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	604					DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						AGGTATGGTTCCGACCGGCGT	0.572													41	52					0	0	0.000781405	0	0
ANO1	55107	broad.mit.edu	37	11	69934100	69934100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:69934100G>A	uc001opj.2	+	2	656	c.351G>A	c.(349-351)ATG>ATA	p.M117I	ANO1_uc001opk.1_Missense_Mutation_p.M89I|ANO1_uc001opl.1_RNA	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	117	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						AGCCCCCGATGGACTACCACG	0.682													5	5					0	0	0.00116845	0	0
FOLR3	2352	broad.mit.edu	37	11	71847002	71847002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:71847002G>A	uc001ory.1	+	2	54	c.4G>A	c.(4-6)GAC>AAC	p.D2N	FOLR3_uc001orx.1_Missense_Mutation_p.D2N			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	Error:Variant_position_missing_in_P41439_after_alignment					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	GGAATAGATGGACATGGCCTG	0.607													30	83					0	0	0.00111076	0	0
STARD10	10809	broad.mit.edu	37	11	72466782	72466782	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:72466782C>T	uc001osy.2	-	6	885	c.594G>A	c.(592-594)TGG>TGA	p.W198*	ARAP1_uc001osv.2_Intron|STARD10_uc001osz.3_Nonsense_Mutation_p.W198*|STARD10_uc001ota.2_Nonsense_Mutation_p.W152*|STARD10_uc001otb.2_Nonsense_Mutation_p.W198*	NM_006645	NP_006636	Q9Y365	PCTL_HUMAN	START domain containing 10	198	START.										0			BRCA - Breast invasive adenocarcinoma(5;7.08e-07)			TATTCACCACCCACTTGGGTA	0.582													55	80					0	0	0.000781405	0	0
FCHSD2	9873	broad.mit.edu	37	11	72600882	72600882	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:72600882G>T	uc009ytl.2	-	11	1254	c.1033C>A	c.(1033-1035)CAA>AAA	p.Q345K	FCHSD2_uc010rrg.1_Missense_Mutation_p.Q209K|FCHSD2_uc001oth.3_Missense_Mutation_p.Q289K|FCHSD2_uc001oti.2_Missense_Mutation_p.Q304K	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	345							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			ACCCGTTGTTGGTGAACAATG	0.398													12	405					0.000219431	0.000900516	0.00244969	1	0
ARHGEF17	9828	broad.mit.edu	37	11	73067264	73067264	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:73067264C>T	uc001otu.2	+	6	3729	c.3708C>T	c.(3706-3708)CTC>CTT	p.L1236L		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1236	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						ACCATCCACTCCTGCTGGAGG	0.652													12	15					0	0	0.00136819	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800065	74800065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:74800065G>A	uc010rro.1	-	1	694	c.694C>T	c.(694-696)CGC>TGC	p.R232C		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GAACTGATGCGAAGCACTGAG	0.577													11	13					0	0	0.00244969	0	0
DGAT2	84649	broad.mit.edu	37	11	75495679	75495679	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:75495679C>T	uc001oxa.2	+	2	397	c.138C>T	c.(136-138)ATC>ATT	p.I46I	DGAT2_uc001oxb.2_Intron	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	46	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					GATCCAGCATCCTCTCCGCCC	0.567													28	38					0	0	0.0024448	0	0
INTS4	92105	broad.mit.edu	37	11	77672163	77672163	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:77672163C>A	uc001oys.2	-	5	521	c.493G>T	c.(493-495)GGT>TGT	p.G165C	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Missense_Mutation_p.G165C	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	165	HEAT 2.				snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			TTTCTTACACCATGAGACGTA	0.333													7	101					0.00198382	0.00805091	0.00198382	1	0
DLG2	1740	broad.mit.edu	37	11	83243803	83243803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:83243803C>T	uc001paj.2	-	16	2129	c.1826G>A	c.(1825-1827)CGA>CAA	p.R609Q	DLG2_uc001pai.2_Missense_Mutation_p.R506Q|DLG2_uc010rsy.1_Missense_Mutation_p.R576Q|DLG2_uc010rsz.1_Missense_Mutation_p.R609Q|DLG2_uc010rta.1_Missense_Mutation_p.R609Q|DLG2_uc001pak.2_Missense_Mutation_p.R714Q|DLG2_uc010rtb.1_Missense_Mutation_p.R576Q|DLG2_uc010rsw.1_Missense_Mutation_p.R91Q|DLG2_uc010rsx.1_Missense_Mutation_p.R90Q	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	609						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TGTCTTCAATCGGGCACGTTC	0.398													17	29					0	0	0.00121646	0	0
TRIM49	57093	broad.mit.edu	37	11	89531642	89531642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:89531642C>T	uc001pdb.2	-	8	1344	c.1015G>A	c.(1015-1017)GGC>AGC	p.G339S		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	339	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TAATATTTGCCCGAGGTGAAA	0.428													17	34					0	0	0.000878237	0	0
FAT3	120114	broad.mit.edu	37	11	92614005	92614005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:92614005G>A	uc001pdj.3	+	22	12253	c.12236G>A	c.(12235-12237)GGA>GAA	p.G4079E	FAT3_uc001pdi.3_Missense_Mutation_p.G519E	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4079	EGF-like 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GATCCAATAGGAAACACTTTC	0.448										TCGA Ovarian(4;0.039)			139	210					0	0	0.000781405	0	0
FOLR4	390243	broad.mit.edu	37	11	94040783	94040783	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:94040783C>T	uc010rud.1	+	4	657	c.657C>T	c.(655-657)TTC>TTT	p.F219F		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	226						extracellular region	folic acid binding|receptor activity			ovary(1)	1						CCCGCCTCTTCGCCAGCTCTG	0.602													72	105					0	0	0.000781405	0	0
MRE11A	4361	broad.mit.edu	37	11	94204767	94204767	+	Missense_Mutation	SNP	G	A	A	rs143400546	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:94204767G>A	uc001peu.2	-	8	1007	c.818C>T	c.(817-819)TCT>TTT	p.S273F	MRE11A_uc001pev.2_Missense_Mutation_p.S273F|MRE11A_uc009ywj.2_Missense_Mutation_p.S276F	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	273					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				TGGGGAAAGAGAAGTAACCAC	0.358								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				20	27					0	0	0.00188189	0	0
CWC15	51503	broad.mit.edu	37	11	94705258	94705258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:94705258G>A	uc001pfd.3	-	2	215	c.92C>T	c.(91-93)TCA>TTA	p.S31L	CWC15_uc009ywl.1_Missense_Mutation_p.S31L|KDM4D_uc001pfe.2_5'Flank	NM_016403	NP_057487	Q9P013	CWC15_HUMAN	CWC15 homolog	31					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome	protein binding|RNA binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GTCTCTGCTTGAATACTGCTT	0.413													72	105					0	0	0.000781405	0	0
C11orf70	85016	broad.mit.edu	37	11	101937378	101937378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:101937378G>A	uc001pgp.2	+	4	459	c.431G>A	c.(430-432)CGA>CAA	p.R144Q	C11orf70_uc001pgo.2_Intron|C11orf70_uc001pgq.2_Missense_Mutation_p.R106Q	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	144										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		GATGAGTTACGAAGAGTAAGT	0.308													27	52					0	0	0.000720815	0	0
GRIA4	2893	broad.mit.edu	37	11	105850336	105850336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:105850336G>A	uc001pix.2	+	17	3025	c.2579G>A	c.(2578-2580)AGA>AAA	p.R860K	GRIA4_uc001piw.2_3'UTR|GRIA4_uc009yxl.1_RNA	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	860	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AACAAAGCCAGATTATCCATC	0.473													40	59					0	0	0.000781405	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810351	106810351	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:106810351C>T	uc001pjg.1	-	4	1431	c.1041G>A	c.(1039-1041)AGG>AGA	p.R347R	GUCY1A2_uc010rvo.1_Silent_p.R347R|GUCY1A2_uc009yxn.1_Silent_p.R347R	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	347					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GAAGCTGCTTCCTTAGACCTT	0.483													10	15					0	0	0.000442599	0	0
EXPH5	23086	broad.mit.edu	37	11	108409798	108409798	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:108409798C>T	uc001pkk.2	-	3	507	c.396G>A	c.(394-396)AGG>AGA	p.R132R	EXPH5_uc010rvy.1_5'Flank|EXPH5_uc010rvz.1_5'Flank|EXPH5_uc010rwa.1_Silent_p.R56R	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	132					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTCCAGATTTCCTGAATGAGA	0.423													48	90					0	0	0.000781405	0	0
DDX10	1662	broad.mit.edu	37	11	108549097	108549097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:108549097C>T	uc001pkm.2	+	5	658	c.593C>T	c.(592-594)CCA>CTA	p.P198L	DDX10_uc001pkl.1_Missense_Mutation_p.P198L	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	198	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GTGTGCACACCAGGTCGGCTT	0.353			T	NUP98	AML*								19	39					0	0	0.00188189	0	0
DDX10	1662	broad.mit.edu	37	11	108712144	108712144	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:108712144C>T	uc001pkm.2	+	15	2253	c.2188C>T	c.(2188-2190)CAG>TAG	p.Q730*	DDX10_uc001pkl.1_Nonsense_Mutation_p.Q730*	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	730							ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GGAAAGACTTCAGGAAGAGGA	0.383			T	NUP98	AML*								19	38					0	0	0.00188189	0	0
Unknown	0	broad.mit.edu	37	11	113661217	113661217	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:113661217G>A	uc001pof.1	+	1		c.1265G>A								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		GGGCTTCTCCGAATGGCTGGC	0.522													11	18					0	0	0.000978159	0	0
TMPRSS4	56649	broad.mit.edu	37	11	117965569	117965569	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:117965569C>T	uc010rxo.1	+	2	333	c.42C>T	c.(40-42)CTC>CTT	p.L14L	TMPRSS4_uc010rxp.1_Silent_p.L14L|TMPRSS4_uc010rxq.1_5'UTR|TMPRSS4_uc010rxr.1_5'UTR|TMPRSS4_uc010rxs.1_Silent_p.L12L|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_5'UTR	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	14	Cytoplasmic (Potential).				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		TGAACAGCCTCGGTAAGTTCA	0.542													5	23					0	0	0.000602214	0	0
CD3D	915	broad.mit.edu	37	11	118211228	118211228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:118211228C>T	uc001pss.1	-	2	273	c.136G>A	c.(136-138)GGA>AGA	p.G46R	CD3D_uc001pst.1_Missense_Mutation_p.G46R	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	46	Extracellular (Potential).				positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		CCCACCGTTCCCTCTACCCAT	0.448													15	33					0	0	0.000422831	0	0
UBE4A	9354	broad.mit.edu	37	11	118250261	118250261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:118250261C>T	uc001psw.2	+	11	1801	c.1672C>T	c.(1672-1674)CGT>TGT	p.R558C	UBE4A_uc001psv.2_Missense_Mutation_p.R565C	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	558					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		TGACAATCTTCGTGAGCAGTT	0.473													41	44					0	0	0.0025221	0	0
MLL	4297	broad.mit.edu	37	11	118374107	118374107	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:118374107C>T	uc001pta.2	+	27	7514	c.7491C>T	c.(7489-7491)GTC>GTT	p.V2497V	MLL_uc001ptb.2_Silent_p.V2500V	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2497					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TGCCAGGAGTCCCCAAAGCTC	0.448			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								19	34					0	0	0.00152264	0	0
MLL	4297	broad.mit.edu	37	11	118375952	118375952	+	Silent	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:118375952C>G	uc001pta.2	+	27	9359	c.9336C>G	c.(9334-9336)CCC>CCG	p.P3112P	MLL_uc001ptb.2_Silent_p.P3115P	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3112					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GTTCTACACCCAGTGTGATGG	0.433			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								4	128					0	0	0.00024832	0	0
CCDC84	338657	broad.mit.edu	37	11	118881945	118881946	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:118881945_118881946CC>TT	uc001pul.2	+	5	521_522	c.465_466CC>TT	c.(463-468)ATCCGT>ATTTGT	p.R156C	CCDC84_uc010ryk.1_RNA|CCDC84_uc010ryl.1_RNA|CCDC84_uc010rym.1_RNA	NM_198489	NP_940891	Q86UT8	CCD84_HUMAN	coiled-coil domain containing 84	156	Potential.									ovary(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_neural(223;0.224)|all_hematologic(192;0.243)		BRCA - Breast invasive adenocarcinoma(274;7.72e-05)		CAGCTCAGATCCGTGAGGTGGA	0.515													8	30					0	0	6.4e-05	0	0
SORL1	6653	broad.mit.edu	37	11	121367676	121367677	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:121367676_121367677CC>TT	uc001pxx.2	+	6	937_938	c.857_858CC>TT	c.(856-858)TCC>TTT	p.S286F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	286	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TTCTTCCAGTCCCGGGAAAACC	0.441													23	31					0	0	6.4e-05	0	0
TMEM225	338661	broad.mit.edu	37	11	123756080	123756080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:123756080G>A	uc001pzi.2	-	1	261	c.53C>T	c.(52-54)TCC>TTC	p.S18F		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	18	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TACGGCCCAGGAGGAGAAAAG	0.408													11	4					0	0	0.000978159	0	0
OR10S1	219873	broad.mit.edu	37	11	123847819	123847819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:123847819C>T	uc001pzm.1	-	1	580	c.580G>A	c.(580-582)GAC>AAC	p.D194N		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GGGGGTATGTCGCAGAAGAAG	0.567													21	36					0	0	0.00121646	0	0
OR8D2	283160	broad.mit.edu	37	11	124189444	124189444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:124189444G>A	uc010sah.1	-	1	650	c.650C>T	c.(649-651)TCT>TTT	p.S217F		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GAAAGCATAAGAGATAAGGAC	0.448													12	18					0	0	0.00136819	0	0
OR8B2	26595	broad.mit.edu	37	11	124252431	124252431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:124252431C>T	uc010sai.1	-	1	809	c.809G>A	c.(808-810)GGA>GAA	p.G270E		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGAAACTTTTCCCTGCTCCAT	0.423													6	18					0	0	0.000673444	0	0
OR8B4	283162	broad.mit.edu	37	11	124294185	124294185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:124294185C>T	uc010sak.1	-	1	583	c.583G>A	c.(583-585)GAG>AAG	p.E195K		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AATACCAGCTCACTGACATGG	0.473													6	9					0	0	0.000157383	0	0
VSIG2	23584	broad.mit.edu	37	11	124617497	124617497	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:124617497G>A	uc001qas.2	-	7	994	c.918C>T	c.(916-918)TTC>TTT	p.F306F		NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	306	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		GTCTTTCCAGGAACCCCTTGC	0.562													18	36					0	0	0.00121646	0	0
ROBO3	64221	broad.mit.edu	37	11	124749733	124749733	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:124749733C>T	uc001qbc.2	+	26	4039	c.3847C>T	c.(3847-3849)CTA>TTA	p.L1283L	ROBO3_uc001qbd.2_Silent_p.L208L|ROBO3_uc010sar.1_Silent_p.L332L|ROBO3_uc001qbe.2_Silent_p.L208L|ROBO3_uc001qbf.1_Silent_p.L167L	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	1283	Cytoplasmic (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		GAGCTGGGCCCTAGAGCTGAG	0.677													6	16					0	0	0.00198382	0	0
EI24	9538	broad.mit.edu	37	11	125446179	125446179	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:125446179C>T	uc001qca.2	+	4	459	c.217C>T	c.(217-219)CAG>TAG	p.Q73*	EI24_uc001qcb.2_Nonsense_Mutation_p.Q73*|EI24_uc010sbd.1_RNA|EI24_uc009zbl.2_Nonsense_Mutation_p.Q73*|EI24_uc001qcc.2_RNA|EI24_uc010sbe.1_Nonsense_Mutation_p.Q59*|EI24_uc010sbf.1_RNA	NM_004879	NP_004870	O14681	EI24_HUMAN	etoposide induced 2.4 isoform 1	73					apoptosis|autophagy|induction of apoptosis|negative regulation of cell growth	endoplasmic reticulum membrane|integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.64e-07)|OV - Ovarian serous cystadenocarcinoma(99;0.0975)		TAGAATTTTCCAGTGTTGTGC	0.358													15	28					0	0	0.00121646	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130319456	130319456	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:130319456G>A	uc010scd.1	+	1	588	c.588G>A	c.(586-588)GCG>GCA	p.A196A		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	196					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		CGCGGCGGGCGGGCTTCGGGG	0.716													5	9					0	0	0.000602214	0	0
CACNA1C	775	broad.mit.edu	37	12	2705039	2705039	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:2705039G>A	uc009zdu.1	+	20	2977	c.2664_splice	c.e20-1	p.R888_splice	CACNA1C_uc009zdv.1_Splice_Site_p.R885_splice|CACNA1C_uc001qkb.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkc.2_Splice_Site_p.R888_splice|CACNA1C_uc001qke.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkf.2_Splice_Site_p.R888_splice|CACNA1C_uc001qjz.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkd.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkg.2_Splice_Site_p.R888_splice|CACNA1C_uc009zdw.1_Splice_Site_p.R888_splice|CACNA1C_uc001qkh.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkl.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkn.2_Splice_Site_p.R888_splice|CACNA1C_uc001qko.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkp.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkr.2_Splice_Site_p.R888_splice|CACNA1C_uc001qku.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkq.2_Splice_Site_p.R888_splice|CACNA1C_uc001qks.2_Splice_Site_p.R888_splice|CACNA1C_uc001qkt.2_Splice_Site_p.R888_splice|CACNA1C_uc001qka.1_Splice_Site_p.R423_splice|CACNA1C_uc001qki.1_Splice_Site_p.R624_splice|CACNA1C_uc001qkj.1_Splice_Site_p.R624_splice|CACNA1C_uc001qkk.1_Splice_Site_p.R624_splice|CACNA1C_uc001qkm.1_Splice_Site_p.R624_splice|CACNA1C_uc001qkw.2_Splice_Site_p.R177_splice	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,						axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CTCCCGTACAGGTTTCGCCTC	0.577													28	28					0	0	0.001512	0	0
GALNT8	26290	broad.mit.edu	37	12	4855410	4855410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:4855410G>A	uc001qne.1	+	6	1251	c.1159G>A	c.(1159-1161)GAG>AAG	p.E387K		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	387	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						AGAGAACGTGGAGCTTAGCCT	0.498													27	27					0	0	0.0024448	0	0
ATN1	1822	broad.mit.edu	37	12	7050626	7050626	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:7050626C>A	uc001qrw.1	+	9	3685	c.3448C>A	c.(3448-3450)CTG>ATG	p.L1150M	ATN1_uc001qrx.1_Missense_Mutation_p.L1150M|C12orf57_uc009zfj.1_5'Flank|C12orf57_uc001qrz.2_5'Flank	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	1150					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GTCAGCTGAGCTGCAGCGCTT	0.647													32	43					2.47316e-13	1.0214e-12	0.00058488	1	0
LOC642846	642846	broad.mit.edu	37	12	9458891	9458891	+	RNA	SNP	A	G	G	rs140731402	by1000genomes	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:9458891A>G	uc010sgp.1	+	17		c.1928A>G			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						CTTCCCCACTAATGCACATCG	0.612													4	11					0	0	0.000602214	0	0
PRB2	653247	broad.mit.edu	37	12	11545984	11545984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:11545984C>T	uc010shk.1	-	3	1063	c.1028G>A	c.(1027-1029)GGA>GAA	p.G343E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGTGG	0.597													50	94					0	0	0.000781405	0	0
BCL2L14	79370	broad.mit.edu	37	12	12232276	12232276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:12232276C>T	uc001rac.2	+	2	238	c.37C>T	c.(37-39)CCC>TCC	p.P13S	ETV6_uc001raa.1_Intron|BCL2L14_uc001raf.1_RNA|BCL2L14_uc001rad.2_Missense_Mutation_p.P13S|BCL2L14_uc001rae.2_Missense_Mutation_p.P13S	NM_138723	NP_620049	Q9BZR8	B2L14_HUMAN	BCL2-like 14 isoform 1	13					apoptosis|regulation of apoptosis	cytosol|endomembrane system|intracellular organelle|membrane	protein binding			skin(1)	1		Prostate(47;0.0872)		BRCA - Breast invasive adenocarcinoma(232;0.154)		GGAAGAAATCCCCCTAGATGA	0.488													30	45					0	0	0.0024448	0	0
MANSC1	54682	broad.mit.edu	37	12	12496028	12496028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:12496028G>A	uc001rai.1	-	2	479	c.221C>T	c.(220-222)TCA>TTA	p.S74L	MANSC1_uc001raj.1_Missense_Mutation_p.S40L|MANSC1_uc009zht.1_Intron	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	74	MANSC.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		CTATTTACCTGATATGTTTTT	0.408													24	56					0	0	0.00047179	0	0
GRIN2B	2904	broad.mit.edu	37	12	14018747	14018747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:14018747C>T	uc001rbt.2	-	2	575	c.396G>A	c.(394-396)ATG>ATA	p.M132I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	132	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTGCCATTATCATAGAGGAGC	0.502													53	85					0	0	0.000781405	0	0
ATF7IP	55729	broad.mit.edu	37	12	14578282	14578282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:14578282C>T	uc001rbw.2	+	2	1591	c.1433C>T	c.(1432-1434)CCA>CTA	p.P478L	ATF7IP_uc010shs.1_Missense_Mutation_p.P478L|ATF7IP_uc001rbu.2_Missense_Mutation_p.P478L|ATF7IP_uc001rbv.1_Missense_Mutation_p.P478L|ATF7IP_uc001rbx.2_Missense_Mutation_p.P478L|ATF7IP_uc010sht.1_Missense_Mutation_p.P478L|ATF7IP_uc001rby.3_Missense_Mutation_p.P478L|ATF7IP_uc001rbz.1_Missense_Mutation_p.P478L|ATF7IP_uc001rca.2_Missense_Mutation_p.P478L|ATF7IP_uc001rcb.2_Missense_Mutation_p.P89L	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	478	Glu-rich.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTTGGTTCACCATCTAAACAA	0.378													22	36					0	0	0.000720815	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21054336	21054336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:21054336G>A	uc001rek.2	+	14	1926	c.1800G>A	c.(1798-1800)ATG>ATA	p.M600I	SLCO1B3_uc001rel.2_Missense_Mutation_p.M600I|SLCO1B3_uc010sil.1_Missense_Mutation_p.M600I|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.M425I	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	600	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					AAACATGTATGAAGTGGTCCA	0.358													52	80					0	0	0.000781405	0	0
C12orf35	55196	broad.mit.edu	37	12	32133938	32133938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:32133938C>T	uc001rks.2	+	4	463	c.49C>T	c.(49-51)CCT>TCT	p.P17S		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	17										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			ACCACTGTATCCTAAAAGCCA	0.338													16	39					0	0	0.000422831	0	0
SYT10	341359	broad.mit.edu	37	12	33532820	33532820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:33532820C>T	uc001rll.1	-	6	1744	c.1447G>A	c.(1447-1449)GAA>AAA	p.E483K	SYT10_uc009zju.1_Missense_Mutation_p.E293K	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	483	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GCCAGCATTTCATTCCAGTGG	0.463													19	45					0	0	0.000958276	0	0
SYT10	341359	broad.mit.edu	37	12	33535372	33535372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:33535372G>A	uc001rll.1	-	5	1579	c.1282C>T	c.(1282-1284)CCT>TCT	p.P428S	SYT10_uc009zju.1_Missense_Mutation_p.P238S	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	428	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTGTACACAGGGTTTAGAGTG	0.408													25	31					0	0	0.000586117	0	0
SYT10	341359	broad.mit.edu	37	12	33559748	33559748	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:33559748C>T	uc001rll.1	-	3	1350	c.1053G>A	c.(1051-1053)TGG>TGA	p.W351*	SYT10_uc009zju.1_Nonsense_Mutation_p.W161*	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	351	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GAATATCTTTCCATACTGTGG	0.333													13	27					0	0	0.00244969	0	0
SYT10	341359	broad.mit.edu	37	12	33559763	33559763	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:33559763C>T	uc001rll.1	-	3	1335	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R	SYT10_uc009zju.1_Silent_p.R156R	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	346	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTGTGGCTTCCCTGGAGAGAT	0.343													18	21					0	0	0.00188189	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43822449	43822449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:43822449C>T	uc010skx.1	-	25	3643	c.3643G>A	c.(3643-3645)GAT>AAT	p.D1215N	ADAMTS20_uc001rno.1_Missense_Mutation_p.D333N|ADAMTS20_uc001rnp.1_Missense_Mutation_p.D369N	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1215	TSP type-1 8.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GGTGACCAATCCCCTGCTTGC	0.343													5	5					0	0	0.000602214	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458398	45458398	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:45458398C>T	uc001rol.2	-	1		c.797G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TACCTGTTTTCCTTTGGCTCC	0.522													7	11					0	0	0.000157383	0	0
ARID2	196528	broad.mit.edu	37	12	46298733	46298733	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:46298733G>T	uc001ros.1	+	21	5380	c.5380G>T	c.(5380-5382)GAA>TAA	p.E1794*	ARID2_uc009zkg.1_Nonsense_Mutation_p.E1250*|ARID2_uc009zkh.1_Nonsense_Mutation_p.E1421*|ARID2_uc001rou.1_3'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1794					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AAAGAGACATGAAAATAACTT	0.348													26	25					7.26314e-15	3.00176e-14	0.00127121	1	0
RAPGEF3	10411	broad.mit.edu	37	12	48134707	48134707	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:48134707A>G	uc009zkp.2	-	19	2354	c.1914T>C	c.(1912-1914)AGT>AGC	p.S638S	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_5'UTR|RAPGEF3_uc001rpx.2_Silent_p.S95S|RAPGEF3_uc010sln.1_Silent_p.S153S|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Silent_p.S638S|RAPGEF3_uc001rpz.3_Silent_p.S680S	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	638					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		CCTGGTGGATACTGTTGAAGA	0.682													13	24					0	0	0.000566183	0	0
OR8S1	341568	broad.mit.edu	37	12	48919933	48919933	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:48919933C>T	uc010slu.1	+	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAGCCAAAATCATTCACCACT	0.507													32	51					0	0	0.0024448	0	0
MLL2	8085	broad.mit.edu	37	12	49425489	49425489	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:49425489C>T	uc001rta.3	-	39	12999	c.12999G>A	c.(12997-12999)GAG>GAA	p.E4333E		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4333	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGAGCTGGGCCTCAGTGGGAA	0.637			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			7	17					0	0	0.000157383	0	0
BIN2	51411	broad.mit.edu	37	12	51686091	51686091	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:51686091G>A	uc001ryg.2	-	10	851	c.799C>T	c.(799-801)CGA>TGA	p.R267*	BIN2_uc009zlz.2_Nonsense_Mutation_p.R235*|BIN2_uc001ryh.2_Nonsense_Mutation_p.R143*|BIN2_uc010sng.1_Nonsense_Mutation_p.R241*	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	267						cytoplasm	protein binding			ovary(1)	1						GTAGCTGTTCGAACTGGGGGA	0.453													41	52					0	0	0.000781405	0	0
KRT6A	3853	broad.mit.edu	37	12	52882250	52882250	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:52882250C>A	uc001sam.2	-	7	1495	c.1286G>T	c.(1285-1287)GGG>GTG	p.G429V		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	429	Rod.|Coil 2.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		ATCCTCCAGCCCTTCCAGCTT	0.602													22	47					1.55469e-16	6.43443e-16	0.00047179	1	0
KRT74	121391	broad.mit.edu	37	12	52963700	52963700	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:52963700C>T	uc001sap.1	-	6	1125	c.1077G>A	c.(1075-1077)GTG>GTA	p.V359V		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	359	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GGTTCAGCTCCACCATCTCGC	0.582													18	34					0	0	0.000566183	0	0
KRT77	374454	broad.mit.edu	37	12	53096951	53096951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:53096951C>T	uc001saw.2	-	1	297	c.268G>A	c.(268-270)GGA>AGA	p.G90R	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	90	Head.					keratin filament	structural molecule activity			ovary(1)	1						CCTCCAAATCCCCCTACTCCC	0.572													6	4					0	0	0.00198382	0	0
OR6C76	390326	broad.mit.edu	37	12	55820217	55820217	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:55820217C>T	uc010spm.1	+	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTATTTCTTCCTCAGGAATT	0.393													27	53					0	0	0.00127121	0	0
OR6C2	341416	broad.mit.edu	37	12	55846409	55846409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:55846409G>A	uc001sgz.1	+	1	412	c.412G>A	c.(412-414)GTG>ATG	p.V138M		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	138	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GAACAACAGGGTGTGTACCTT	0.468													15	33					0	0	0.000308642	0	0
BAZ2A	11176	broad.mit.edu	37	12	56998871	56998871	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:56998871G>C	uc001slq.1	-	14	2934	c.2740C>G	c.(2740-2742)CCC>GCC	p.P914A	BAZ2A_uc001slp.1_Missense_Mutation_p.P912A|BAZ2A_uc001slo.1_5'Flank|BAZ2A_uc009zov.1_5'Flank|BAZ2A_uc009zow.1_Missense_Mutation_p.P882A	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	914					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						CAGTAGGAGGGAAAGCCAGGA	0.473													12	33					0	0	0.000978159	0	0
RDH16	8608	broad.mit.edu	37	12	57351000	57351000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:57351000C>T	uc001smi.3	-	1	419	c.247G>A	c.(247-249)GAT>AAT	p.D83N	RDH16_uc009zpa.2_Missense_Mutation_p.G24E|RDH16_uc010sqx.1_RNA	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	83	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						TTGGTAACATCCAGGGTCACC	0.592													29	31					0	0	0.0024448	0	0
NAB2	4665	broad.mit.edu	37	12	57485290	57485290	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:57485290C>A	uc001smz.2	+	2	844	c.466C>A	c.(466-468)CGC>AGC	p.R156S		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	156					cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGGCAGTGCCCGCAGTTTTAG	0.632													6	40					0.00198382	0.00805091	0.00198382	1	0
IRAK3	11213	broad.mit.edu	37	12	66605284	66605284	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:66605284C>T	uc001sth.2	+	5	597	c.495C>T	c.(493-495)TTC>TTT	p.F165F	IRAK3_uc010ssy.1_Silent_p.F104F	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	165	Protein kinase.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		CTAGAAATTTCCACAAAGACT	0.353													24	23					0	0	0.00278032	0	0
GRIP1	23426	broad.mit.edu	37	12	66838422	66838422	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:66838422G>A	uc001stk.2	-	12	1714	c.1473C>T	c.(1471-1473)CTC>CTT	p.L491L	GRIP1_uc010sta.1_Silent_p.L435L|GRIP1_uc001stj.2_Silent_p.L273L|GRIP1_uc001stl.1_Silent_p.L383L|GRIP1_uc001stm.2_Silent_p.L491L	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	543	PDZ 4.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		AGTCTCGGAGGAGCTGACTGG	0.458													43	51					0	0	0.000781405	0	0
PTPRB	5787	broad.mit.edu	37	12	70918314	70918314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:70918314G>A	uc001swb.3	-	31	5938	c.5908C>T	c.(5908-5910)CGG>TGG	p.R1970W	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.R1880W|PTPRB_uc010stp.1_Missense_Mutation_p.R1880W|PTPRB_uc001swc.3_Missense_Mutation_p.R2188W|PTPRB_uc001swa.3_Missense_Mutation_p.R2100W	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1970	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGTTCACTCCGTAGCTTTCTT	0.438													13	17					0	0	0.000308642	0	0
PTPRB	5787	broad.mit.edu	37	12	70933765	70933765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:70933765G>A	uc001swb.3	-	22	5008	c.4978C>T	c.(4978-4980)CGT>TGT	p.R1660C	PTPRB_uc010sto.1_Missense_Mutation_p.R1570C|PTPRB_uc010stp.1_Missense_Mutation_p.R1570C|PTPRB_uc001swc.3_Missense_Mutation_p.R1878C|PTPRB_uc001swa.3_Missense_Mutation_p.R1790C	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1660	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CGATCCCTACGAATGCTCAGA	0.408													17	32					0	0	0.00074312	0	0
LGR5	8549	broad.mit.edu	37	12	71977897	71977897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:71977897G>A	uc001swl.2	+	18	2155	c.2107G>A	c.(2107-2109)GGC>AGC	p.G703S	LGR5_uc001swm.2_Missense_Mutation_p.G679S|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	703	Helical; Name=4; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						CCTGCTGGGTGGCAGCAAGTA	0.537													125	178					0	0	0.000781405	0	0
SYT1	6857	broad.mit.edu	37	12	79611408	79611408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:79611408G>A	uc001sys.2	+	5	780	c.109G>A	c.(109-111)GAA>AAA	p.E37K	SYT1_uc001syt.2_Missense_Mutation_p.E37K|SYT1_uc001syu.2_Missense_Mutation_p.E37K|SYT1_uc001syv.2_Missense_Mutation_p.E37K	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	37	Vesicular (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						AGAAGGAAAGGAAGATGCATT	0.468													8	34					0	0	0.000442599	0	0
SYT1	6857	broad.mit.edu	37	12	79689912	79689912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:79689912C>T	uc001sys.2	+	8	1209	c.538C>T	c.(538-540)CCT>TCT	p.P180S	SYT1_uc001syt.2_Missense_Mutation_p.P180S|SYT1_uc001syu.2_Missense_Mutation_p.P177S|SYT1_uc001syv.2_Missense_Mutation_p.P180S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	180	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						CACATCTGATCCTTACGTGAA	0.423													22	34					0	0	0.00278032	0	0
Unknown	0	broad.mit.edu	37	12	80765831	80765831	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:80765831C>T	uc009zsg.1	+	11	982	c.381C>T	c.(379-381)GGC>GGT	p.G127G	uc001szd.2_Silent_p.G266G					RecName: Full=Uncharacterized protein C12orf64;																		ATAATGAAGGCTGTTGCAAGA	0.313													8	18					0	0	0.000978159	0	0
CEP290	80184	broad.mit.edu	37	12	88483138	88483138	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:88483138A>T	uc001tar.2	-	31	4044	c.3700T>A	c.(3700-3702)TAC>AAC	p.Y1234N	CEP290_uc001taq.2_Missense_Mutation_p.Y294N	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1234	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CGCAAGTTGTAGGCCTCCATC	0.433													20	32					0	0	0.00188189	0	0
GALNT4	8693	broad.mit.edu	37	12	89917791	89917791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:89917791C>T	uc001tbd.2	-	1	745	c.536G>A	c.(535-537)AGA>AAA	p.R179K	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Missense_Mutation_p.R176K|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	179	Lumenal (Potential).|Catalytic subdomain A.				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						CAAATAAACTCTGTCACTCAA	0.443											OREG0022018	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	43					0	0	0.001512	0	0
EPYC	1833	broad.mit.edu	37	12	91363872	91363872	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:91363872C>T	uc001tbk.2	-	6	840	c.747G>A	c.(745-747)TTG>TTA	p.L249L		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	249	LRR 4.				female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						GGATGTGGTCCAAGTTGTTAT	0.413													39	61					0	0	0.00195071	0	0
PLXNC1	10154	broad.mit.edu	37	12	94699023	94699023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:94699023G>A	uc001tdc.2	+	31	4918	c.4669G>A	c.(4669-4671)GTC>ATC	p.V1557I	PLXNC1_uc010sut.1_Missense_Mutation_p.V604I|PLXNC1_uc009zsv.2_Missense_Mutation_p.V296I	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1557	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GCATGTAAAAGTCTTATTTGA	0.388													4	4					0	0	0.000602214	0	0
USP44	84101	broad.mit.edu	37	12	95927372	95927372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:95927372G>A	uc001teg.2	-	2	805	c.661C>T	c.(661-663)CAG>TAG	p.Q221*	USP44_uc001teh.2_Nonsense_Mutation_p.Q221*|USP44_uc009zte.2_Nonsense_Mutation_p.Q218*	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	221					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						ATGGTCGACTGAGCGAGCCCT	0.403													32	41					0	0	0.001512	0	0
ANO4	121601	broad.mit.edu	37	12	101437354	101437354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:101437354C>T	uc010svm.1	+	13	1764	c.1192C>T	c.(1192-1194)CCT>TCT	p.P398S	ANO4_uc001thw.2_Missense_Mutation_p.P363S|ANO4_uc001thx.2_Missense_Mutation_p.P398S	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	398	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CATCATGTGTCCTGTGTGTGA	0.368										HNSCC(74;0.22)			26	37					0	0	0.00178596	0	0
SPIC	121599	broad.mit.edu	37	12	101880381	101880381	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:101880381C>T	uc001tid.2	+	6	738	c.579C>T	c.(577-579)TTC>TTT	p.F193F	SPIC_uc009zua.2_Silent_p.F68F|SPIC_uc010svp.1_Silent_p.F192F	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	193	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CTTACCAGTTCAGTGAGGCCA	0.438													38	77					0	0	0.00148497	0	0
MYBPC1	4604	broad.mit.edu	37	12	102057335	102057335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:102057335G>A	uc001tii.2	+	20	2380	c.2278G>A	c.(2278-2280)GGA>AGA	p.G760R	MYBPC1_uc001tig.2_Missense_Mutation_p.G785R|MYBPC1_uc010svq.1_Missense_Mutation_p.G747R|MYBPC1_uc001tih.2_Missense_Mutation_p.G785R|MYBPC1_uc001tij.2_Missense_Mutation_p.G760R|MYBPC1_uc010svr.1_Missense_Mutation_p.G760R|MYBPC1_uc010svs.1_Missense_Mutation_p.G760R|MYBPC1_uc010svt.1_Missense_Mutation_p.G748R|MYBPC1_uc010svu.1_Missense_Mutation_p.G741R|MYBPC1_uc001tik.2_Missense_Mutation_p.G734R|MYBPC1_uc001til.2_5'Flank|MYBPC1_uc001tim.2_5'Flank	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	760	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding	p.T760T(1)		ovary(2)|liver(1)|skin(1)	4						TTGCTTTGAAGGAAGTAAGTA	0.463													12	11					0	0	0.00136819	0	0
CHPT1	56994	broad.mit.edu	37	12	102108354	102108354	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:102108354T>C	uc001tin.2	+	3	717	c.494T>C	c.(493-495)TTT>TCT	p.F165S	CHPT1_uc001tio.2_RNA|CHPT1_uc001tip.1_Missense_Mutation_p.F165S	NM_020244	NP_064629	Q8WUD6	CHPT1_HUMAN	choline phosphotransferase 1	165	Helical; (Potential).				platelet activating factor biosynthetic process|regulation of cell growth	Golgi membrane|integral to membrane|microsome	diacylglycerol binding|diacylglycerol cholinephosphotransferase activity|metal ion binding				0						TTCTGCTCTTTTATTGGGATG	0.353													47	64					0	0	0.000781405	0	0
STAB2	55576	broad.mit.edu	37	12	104031812	104031812	+	Missense_Mutation	SNP	G	A	A	rs115145720	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:104031812G>A	uc001tjw.2	+	8	914	c.728G>A	c.(727-729)CGA>CAA	p.R243Q		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	243	Extracellular (Potential).|EGF-like 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCATGTTTACGAAAAATCTGC	0.493													41	59					0	0	0.000781405	0	0
STAB2	55576	broad.mit.edu	37	12	104044327	104044327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:104044327C>T	uc001tjw.2	+	11	1414	c.1228C>T	c.(1228-1230)CCT>TCT	p.P410S		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	410	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GGTGCTGTTACCTACAGACAA	0.428													16	24					0	0	0.00121646	0	0
STAB2	55576	broad.mit.edu	37	12	104067779	104067779	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:104067779C>T	uc001tjw.2	+	23	2652	c.2466C>T	c.(2464-2466)CTC>CTT	p.L822L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	822	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCGGGAGACTCTGTGATAAGC	0.562													20	40					0	0	0.00152264	0	0
STAB2	55576	broad.mit.edu	37	12	104149468	104149468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:104149468C>T	uc001tjw.2	+	63	7145	c.6959C>T	c.(6958-6960)TCC>TTC	p.S2320F	STAB2_uc009zug.2_Intron	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2320	Extracellular (Potential).|FAS1 7.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTCCTGATGTCCTTCCCCTCA	0.562													40	51					0	0	0.000781405	0	0
HCFC2	29915	broad.mit.edu	37	12	104497010	104497010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:104497010C>T	uc001tkj.3	+	15	2441	c.2338C>T	c.(2338-2340)CGG>TGG	p.R780W	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	780	Fibronectin type-III 3.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						TACACAAGTTCGGTGGCTTCA	0.358													25	43					0	0	0.000586117	0	0
TMEM119	338773	broad.mit.edu	37	12	108985639	108985639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:108985639G>A	uc001tng.2	-	2	684	c.521C>T	c.(520-522)GCC>GTC	p.A174V	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	174	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CAAGATGTCGGCCTGGAGCTG	0.607													21	29					0	0	0.00106085	0	0
SSH1	54434	broad.mit.edu	37	12	109186549	109186549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:109186549G>A	uc001tnm.2	-	14	1493	c.1406C>T	c.(1405-1407)CCT>CTT	p.P469L	SSH1_uc001tnl.2_Missense_Mutation_p.P157L|SSH1_uc010sxg.1_Missense_Mutation_p.P480L|SSH1_uc001tnn.3_Missense_Mutation_p.P469L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	469					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						GTCATCCACAGGCTGCTGGAG	0.637													15	21					0	0	0.000422831	0	0
ACACB	32	broad.mit.edu	37	12	109660704	109660704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:109660704C>T	uc001tob.2	+	26	3898	c.3779C>T	c.(3778-3780)CCC>CTC	p.P1260L	ACACB_uc001toc.2_Missense_Mutation_p.P1260L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1260					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CAGTTCTGCCCCGAGAACCTC	0.602													5	12					0	0	0.000602214	0	0
ACACB	32	broad.mit.edu	37	12	109671600	109671600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:109671600C>T	uc001tob.2	+	30	4306	c.4187C>T	c.(4186-4188)ACC>ATC	p.T1396I	ACACB_uc001toc.2_Missense_Mutation_p.T1396I|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.T62I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1396					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CCCAAAGACACCCCCCTCTTC	0.612													16	46					0	0	0.00121646	0	0
TRPV4	59341	broad.mit.edu	37	12	110232206	110232206	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:110232206G>A	uc001tpj.1	-	7	1514	c.1419C>T	c.(1417-1419)ATC>ATT	p.I473I	TRPV4_uc001tpg.1_Silent_p.I439I|TRPV4_uc001tph.1_Silent_p.I426I|TRPV4_uc001tpi.1_Silent_p.I366I|TRPV4_uc001tpk.1_Silent_p.I473I|TRPV4_uc001tpl.1_Silent_p.I413I	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	473	Helical; (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGACCACGTTGATGTAGAAGG	0.617													26	59					0	0	0.00106085	0	0
KDM2B	84678	broad.mit.edu	37	12	121970772	121970772	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:121970772G>A	uc001uat.2	-	8	974	c.870C>T	c.(868-870)GAC>GAT	p.D290D	KDM2B_uc001uas.2_Silent_p.D259D|KDM2B_uc001uau.2_Silent_p.D173D|KDM2B_uc001uav.3_Intron	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	290	JmjC.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GTTCCACACGGTCTCCCAGAA	0.527													26	30					0	0	0.000720815	0	0
CLIP1	6249	broad.mit.edu	37	12	122825945	122825945	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:122825945G>A	uc001ucg.1	-	10	1912	c.1806C>T	c.(1804-1806)AAC>AAT	p.N602N	CLIP1_uc001uch.1_Silent_p.N591N|CLIP1_uc001uci.1_Silent_p.N556N|CLIP1_uc001ucj.1_Silent_p.N292N|CLIP1_uc009zxo.1_Silent_p.N158N	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	602	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		TCAATGACTCGTTCTCTTTGG	0.468													54	93					0	0	0.000781405	0	0
DNAH10	196385	broad.mit.edu	37	12	124265689	124265689	+	Silent	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:124265689T>G	uc001uft.3	+	6	526	c.501T>G	c.(499-501)TCT>TCG	p.S167S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	167	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GAGTCACATCTGGAGAAGTCT	0.428													43	90					0	0	0.0025221	0	0
DNAH10	196385	broad.mit.edu	37	12	124325937	124325937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:124325937G>A	uc001uft.3	+	29	4876	c.4851G>A	c.(4849-4851)ATG>ATA	p.M1617I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1617	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGTCCGCGATGATTTCAGCAG	0.502													101	129					0	0	0.000781405	0	0
PIWIL1	9271	broad.mit.edu	37	12	130834508	130834508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:130834508G>A	uc001uik.2	+	9	1130	c.1040G>A	c.(1039-1041)AGG>AAG	p.R347K	PIWIL1_uc001uij.1_Missense_Mutation_p.R347K	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	347	PAZ.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		GAATACTACAGGAAGGTAAGA	0.403													18	34					0	0	0.000958276	0	0
ULK1	8408	broad.mit.edu	37	12	132398952	132398952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:132398952C>T	uc001uje.2	+	16	1571	c.1303C>T	c.(1303-1305)CCC>TCC	p.P435S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	435					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CATCCCAGTCCCCACGCAGGT	0.637													22	19					0	0	0.00152264	0	0
EP400	57634	broad.mit.edu	37	12	132502894	132502894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:132502894C>T	uc001ujn.2	+	20	4285	c.4250C>T	c.(4249-4251)CCA>CTA	p.P1417L	EP400_uc001ujl.2_Missense_Mutation_p.P1416L|EP400_uc001ujm.2_Missense_Mutation_p.P1417L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1453					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GCAGCCCGACCAGCAGCAGCA	0.592													15	38					0	0	0.000566183	0	0
EP400	57634	broad.mit.edu	37	12	132529956	132529956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr12:132529956C>T	uc001ujn.2	+	37	6912	c.6877C>T	c.(6877-6879)CGC>TGC	p.R2293C	EP400_uc001ujl.2_Missense_Mutation_p.R2292C|EP400_uc001ujm.2_Missense_Mutation_p.R2212C	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2329					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TCTGAAAATTCGCAGAGAGGG	0.577													12	30					0	0	0.00136819	0	0
TPTE2	93492	broad.mit.edu	37	13	20048070	20048070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:20048070G>A	uc001umd.2	-	7	587	c.376C>T	c.(376-378)CGA>TGA	p.R126*	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Nonsense_Mutation_p.R89*|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	126	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACAAATACTCGAAGAAGAACA	0.259													37	49					0	0	0.000692331	0	0
CRYL1	51084	broad.mit.edu	37	13	21013861	21013861	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:21013861C>T	uc001une.2	-	4	388	c.309G>A	c.(307-309)AAG>AAA	p.K103K	CRYL1_uc001unf.2_Silent_p.K81K|CRYL1_uc001ung.2_Silent_p.K81K|CRYL1_uc010tcp.1_5'UTR	NM_015974	NP_057058	Q9Y2S2	CRYL1_HUMAN	lambda-crystallin	103					fatty acid metabolic process	cytosol	3-hydroxyacyl-CoA dehydrogenase activity|L-gulonate 3-dehydrogenase activity|NAD+ binding|protein homodimerization activity				0		all_cancers(29;2.27e-23)|all_epithelial(30;1.69e-19)|all_lung(29;8.29e-18)|Lung SC(185;0.0262)|Ovarian(182;0.0827)|Hepatocellular(188;0.244)		all cancers(112;6.6e-05)|Epithelial(112;0.00178)|OV - Ovarian serous cystadenocarcinoma(117;0.0169)|Lung(94;0.0215)|GBM - Glioblastoma multiforme(144;0.0402)|LUSC - Lung squamous cell carcinoma(192;0.061)		CAAAAATCTTCTTCTTCAGTT	0.423													27	39					0	0	0.00127121	0	0
ATP12A	479	broad.mit.edu	37	13	25262538	25262538	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:25262538A>T	uc001upp.2	+	4	497	c.310A>T	c.(310-312)ATC>TTC	p.I104F	ATP12A_uc010aaa.2_Missense_Mutation_p.I104F	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	104	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GACGCCTGAGATCGTCAAGTT	0.592													105	149					0	0	0.000781405	0	0
MTUS2	23281	broad.mit.edu	37	13	30062078	30062078	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:30062078G>A	uc001usl.3	+	9	3529	c.3471G>A	c.(3469-3471)GAG>GAA	p.E1157E	MTUS2_uc001usm.3_Silent_p.E126E|MTUS2_uc010aau.2_Silent_p.E36E|uc001usn.2_5'Flank	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1147	Localization to the growing distal tip of microtubules.|Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CTCTCCTAGAGATGGAAAATA	0.542													27	45					0	0	0.00058488	0	0
USPL1	10208	broad.mit.edu	37	13	31233208	31233208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:31233208G>A	uc001utc.2	+	9	3426	c.2994G>A	c.(2992-2994)ATG>ATA	p.M998I	USPL1_uc001utd.2_Missense_Mutation_p.M669I|USPL1_uc001ute.1_Missense_Mutation_p.M669I	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	998					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		ATTTGGGAATGGGAGATAGTC	0.418													4	46					0	0	0.000602214	0	0
STARD13	90627	broad.mit.edu	37	13	33703805	33703805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:33703805C>T	uc001uuw.2	-	5	1135	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	STARD13_uc001uuu.2_Missense_Mutation_p.E329K|STARD13_uc001uuv.2_Missense_Mutation_p.E219K|STARD13_uc001uux.2_Missense_Mutation_p.E302K|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.E322K	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	337					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CTGCTGTGCTCCGACGGGCTG	0.607													22	28					0	0	0.000586117	0	0
SPERT	220082	broad.mit.edu	37	13	46276538	46276538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:46276538G>A	uc001van.1	+	1	93	c.13G>A	c.(13-15)GAA>AAA	p.E5K	SPERT_uc001vao.2_5'Flank	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	5						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		GTCACCTCTGGAATGTTCTGA	0.433													58	100					0	0	0.000781405	0	0
SUCLA2	8803	broad.mit.edu	37	13	48523624	48523624	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:48523624A>G	uc001vbs.2	-	9	1279	c.1222T>C	c.(1222-1224)TTA>CTA	p.L408L	SUCLA2_uc010tgb.1_Silent_p.L348L|SUCLA2_uc010tgc.1_Silent_p.L274L|SUCLA2_uc010tgd.1_Silent_p.L348L|SUCLA2_uc001vbt.1_RNA	NM_003850	NP_003841	Q9P2R7	SUCB1_HUMAN	succinate-CoA ligase, ADP-forming, beta subunit	408					succinyl-CoA pathway|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			central_nervous_system(1)	1		all_cancers(8;1.13e-24)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|Lung NSC(96;0.000226)|all_hematologic(8;0.000885)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;2.1e-06)	Succinic acid(DB00139)	TCACCTTGTAACCGTACCACA	0.353													14	31					0	0	0.00074312	0	0
THSD1	55901	broad.mit.edu	37	13	52952920	52952920	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:52952920G>A	uc001vgo.2	-	5	1730	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	THSD1_uc001vgp.2_Silent_p.F342F|THSD1_uc010tgz.1_Silent_p.F16F|THSD1_uc010aea.2_5'UTR	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	395	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		TGGATGGCTGGAAAGCTGcaa	0.318													12	17					0	0	0.000978159	0	0
SUGT1	10910	broad.mit.edu	37	13	53240968	53240969	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:53240968_53240969CC>TT	uc001vhc.2	+	11	862_863	c.637_638CC>TT	c.(637-639)CCT>TTT	p.P213F	SUGT1_uc001vha.2_RNA|SUGT1_uc001vhb.2_Missense_Mutation_p.P181F|SUGT1_uc010thb.1_Missense_Mutation_p.P125F|SUGT1_uc001vhd.2_Missense_Mutation_p.P70F	NM_001130912	NP_001124384	Q9Y2Z0	SUGT1_HUMAN	suppressor of G2 allele of SKP1 isoform a	213	CS.				mitosis	kinetochore|ubiquitin ligase complex	binding				0		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.25e-08)		GGTTAAACTTCCTTCTGGAGAG	0.322													30	60					0	0	6.4e-05	0	0
PCDH20	64881	broad.mit.edu	37	13	61987197	61987197	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:61987197C>T	uc001vid.3	-	2	1399	c.1035G>A	c.(1033-1035)GTG>GTA	p.V345V	PCDH20_uc010thj.1_Silent_p.V345V	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	318	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AGTCTTTATCCACAGCCTGGA	0.428													37	58					0	0	0.00170553	0	0
UCHL3	7347	broad.mit.edu	37	13	76169099	76169099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:76169099C>T	uc001vjq.2	+	7	553	c.523C>T	c.(523-525)CAT>TAT	p.H175Y	UCHL3_uc001vjr.2_Missense_Mutation_p.H139Y	NM_006002	NP_005993	P15374	UCHL3_HUMAN	ubiquitin carboxyl-terminal esterase L3	175					ubiquitin-dependent protein catabolic process	cytoplasm	cysteine-type peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity				0				GBM - Glioblastoma multiforme(99;0.0125)		TGCATTAGTTCATGTAGATGG	0.338													99	174					0	0	0.000781405	0	0
BTF3L1	690	broad.mit.edu	37	13	77502725	77502725	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:77502725C>T	uc001vkb.3	+	1		c.141C>T				NR_026983				Homo sapiens basic transcription factor 3, like 1, mRNA (cDNA clone IMAGE:40013884).												0						CCCTGAAGTTCAGGCATCGCT	0.438													9	13					0	0	0.000673444	0	0
MYCBP2	23077	broad.mit.edu	37	13	77635390	77635390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:77635390C>T	uc001vkf.2	-	77	12927	c.12836G>A	c.(12835-12837)GGT>GAT	p.G4279D	MYCBP2_uc010aev.2_Missense_Mutation_p.G3683D|MYCBP2_uc001vke.2_Missense_Mutation_p.G896D	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TCTACCACAACCTTCATGAAG	0.363													15	33					0	0	0.000308642	0	0
MYCBP2	23077	broad.mit.edu	37	13	77671818	77671818	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:77671818G>A	uc001vkf.2	-	57	9448	c.9357C>T	c.(9355-9357)CCC>CCT	p.P3119P	MYCBP2_uc010aev.2_Silent_p.P2523P|MYCBP2_uc001vkg.1_Silent_p.P642P|MYCBP2_uc010aew.2_Silent_p.P505P	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GTAAAGTTAAGGGAAGAGGAG	0.408													8	10					0	0	0.000673444	0	0
SCEL	8796	broad.mit.edu	37	13	78183195	78183195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:78183195C>T	uc001vki.2	+	21	1390	c.1220C>T	c.(1219-1221)TCC>TTC	p.S407F	SCEL_uc001vkj.2_Missense_Mutation_p.S387F|SCEL_uc010thx.1_Missense_Mutation_p.S365F	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	407	9.|16 X approximate tandem repeats.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		GTTTGAAGTTCCAAAGACCTT	0.269													16	24					0	0	0.000566183	0	0
DZIP1	22873	broad.mit.edu	37	13	96246260	96246260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:96246260C>T	uc001vmk.2	-	16	2470	c.1618G>A	c.(1618-1620)GGA>AGA	p.G540R	DZIP1_uc001vmj.2_Missense_Mutation_p.G16R|DZIP1_uc001vml.2_Missense_Mutation_p.G521R	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	540					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			GTTCTTAGTCCCTTAGTGAGG	0.343													28	47					0	0	0.001512	0	0
SLC15A1	6564	broad.mit.edu	37	13	99356649	99356649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:99356649C>T	uc001vno.2	-	17	1387	c.1310G>A	c.(1309-1311)AGG>AAG	p.R437K		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	437	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	AATGTTTATCCTTGTCAGTTT	0.453													25	53					0	0	0.000586117	0	0
ZIC2	7546	broad.mit.edu	37	13	100637612	100637612	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:100637612C>T	uc001von.2	+	3	1275	c.1275C>T	c.(1273-1275)TCC>TCT	p.S425S		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	425					brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CTGAATCCTCCCCGGCCGCCA	0.662													7	21					0	0	0.000157383	0	0
NALCN	259232	broad.mit.edu	37	13	101733962	101733962	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:101733962G>A	uc001vox.1	-	34	3990	c.3801C>T	c.(3799-3801)GGC>GGT	p.G1267G		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1267	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TTTGCCAGAAGCCAGCAGGCG	0.433													17	26					0	0	0.000958276	0	0
TPP2	7174	broad.mit.edu	37	13	103301256	103301256	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:103301256G>A	uc001vpi.3	+	22	2732	c.2629_splice	c.e22-1	p.Y877_splice		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II						proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TTCTTTTTCAGTATTCTTTGA	0.353													8	10					0	0	0.000274275	0	0
TPP2	7174	broad.mit.edu	37	13	103301765	103301765	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:103301765A>G	uc001vpi.3	+	23	2984	c.2881A>G	c.(2881-2883)AAA>GAA	p.K961E		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	961					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TAGAATACCTAAAGGGGCAGG	0.348													15	33					0	0	0.000422831	0	0
COL4A1	1282	broad.mit.edu	37	13	110835383	110835383	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr13:110835383C>T	uc001vqw.3	-	28	2174	c.2052G>A	c.(2050-2052)GTG>GTA	p.V684V	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	684	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CTGGCTGGCCCACAGCGCCCT	0.612													10	15					0	0	0.000442599	0	0
OR11H6	122748	broad.mit.edu	37	14	20692397	20692397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:20692397C>T	uc010tlc.1	+	1	529	c.529C>T	c.(529-531)CCT>TCT	p.P177S		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	177	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		CTATCCAGTCCCTATTGTTCT	0.502													14	8					0	0	0.00244969	0	0
LRRC16B	90668	broad.mit.edu	37	14	24538049	24538049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:24538049G>A	uc001wlj.2	+	38	4013	c.3856G>A	c.(3856-3858)GGC>AGC	p.G1286S	LRRC16B_uc001wlk.2_Missense_Mutation_p.G339S|CPNE6_uc010tnv.1_5'Flank|CPNE6_uc001wlm.2_5'Flank|CPNE6_uc001wll.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1286										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		TGTGCCCAGGGGCCGCCAGCC	0.642													16	13					0	0	0.00152264	0	0
NYNRIN	57523	broad.mit.edu	37	14	24883901	24883901	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:24883901C>T	uc001wpf.3	+	9	3264	c.2946C>T	c.(2944-2946)CCC>CCT	p.P982P		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	982					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						ACTCTGGGCCCCTGGAGAGTC	0.582													5	10					0	0	0.000602214	0	0
CTSG	1511	broad.mit.edu	37	14	25043014	25043014	+	Silent	SNP	C	T	T	rs139142097		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:25043014C>T	uc001wpq.2	-	5	634	c.597G>A	c.(595-597)GGG>GGA	p.G199G		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	199	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CTCCGGAATCCCCCTGTAGGT	0.617													24	44					0	0	0.00047179	0	0
ARHGAP5	394	broad.mit.edu	37	14	32560526	32560526	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:32560526A>G	uc001wrl.2	+	2	890	c.651A>G	c.(649-651)TCA>TCG	p.S217S	ARHGAP5_uc001wrm.2_Silent_p.S217S|ARHGAP5_uc001wrn.2_Silent_p.S217S|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	217					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		CATTTGCTTCAAATAAAAAGA	0.333													39	69					0	0	0.00170553	0	0
EAPP	55837	broad.mit.edu	37	14	35005439	35005439	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:35005439G>A	uc001wsd.1	-	2	226	c.117C>T	c.(115-117)GAC>GAT	p.D39D		NM_018453	NP_060923	Q56P03	EAPP_HUMAN	E2F-associated phosphoprotein	39					negative regulation of transcription elongation from RNA polymerase II promoter|positive regulation of cell proliferation|positive regulation of transcription elongation from RNA polymerase II promoter	Golgi apparatus|nucleus|plasma membrane				ovary(1)	1	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00342)|Epithelial(34;0.18)	GBM - Glioblastoma multiforme(112;0.0196)		TTCGTTTTTGGTCAGGAGTTC	0.308													27	35					0	0	0.0024448	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36123592	36123592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:36123592G>A	uc001wti.2	-	29	4461	c.4070C>T	c.(4069-4071)TCT>TTT	p.S1357F	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.S1357F|RALGAPA1_uc010tpv.1_Missense_Mutation_p.S1370F|RALGAPA1_uc010tpw.1_Missense_Mutation_p.S1404F	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1357	Minimal domain that binds to TCF3/E12 (By similarity).				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TTTCAAGGGAGAATCAGGCTG	0.289													24	19					0	0	0.000586117	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724757	38724757	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:38724757C>T	uc001wum.1	-	1	818	c.471G>A	c.(469-471)TGG>TGA	p.W157*		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	157	Extracellular (Potential).|C-type lectin.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GCATCTCCTTCCAGCCTGCGG	0.567													23	21					0	0	0.00127121	0	0
MIA2	117153	broad.mit.edu	37	14	39706219	39706219	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:39706219T>G	uc001wux.2	+	2	403	c.209T>G	c.(208-210)GTT>GGT	p.V70G	MIA2_uc010amy.1_Missense_Mutation_p.L2V	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	70	SH3.					extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TCTGTTTATGTTAAACTTGCA	0.378													13	18					0	0	0.00185496	0	0
CDKL1	8814	broad.mit.edu	37	14	50807787	50807787	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:50807787C>T	uc010anu.1	-	18	2634	c.2634G>A	c.(2632-2634)TCG>TCA	p.S878S	CDKL1_uc001wxz.2_Silent_p.S207S	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	206	Protein kinase.					cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					GATCCACATCCGATTTTCCTG	0.542													13	24					0	0	0.00244969	0	0
NIN	51199	broad.mit.edu	37	14	51226703	51226703	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:51226703G>A	uc001wym.2	-	17	2462	c.2271C>T	c.(2269-2271)GGC>GGT	p.G757G	NIN_uc001wyi.2_Silent_p.G757G|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Silent_p.G757G|NIN_uc010tqp.1_Silent_p.G763G|NIN_uc001wyo.2_Silent_p.G757G	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	757	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					CCTGAGTCAAGCCTCTCACCT	0.512			T	PDGFRB	MPD								34	76					0	0	0.000692331	0	0
KTN1	3895	broad.mit.edu	37	14	56133973	56133973	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:56133973G>A	uc001xcb.2	+	35	3494	c.3192G>A	c.(3190-3192)CAG>CAA	p.Q1064Q	KTN1_uc001xce.2_Silent_p.Q1035Q|KTN1_uc001xcc.2_Silent_p.Q1064Q|KTN1_uc001xcd.2_Silent_p.Q1041Q|KTN1_uc010trb.1_Silent_p.Q1064Q|KTN1_uc001xcf.1_Silent_p.Q1041Q|KTN1_uc010aoq.2_Silent_p.Q330Q|KTN1_uc010trc.1_Silent_p.Q69Q|KTN1_uc001xcg.2_Silent_p.Q25Q	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1064	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						GGCAGCAACAGGTGGAAGCTG	0.308			T	RET	papillary thryoid								28	36					0	0	0.00283554	0	0
C14orf39	317761	broad.mit.edu	37	14	60932705	60932705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:60932705C>T	uc001xez.3	-	11	1074	c.964G>A	c.(964-966)GAT>AAT	p.D322N	C14orf39_uc010apo.2_Missense_Mutation_p.D33N	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	322										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		ACCTGTGTATCATTTTCTTTT	0.294													9	10					0	0	0.00136819	0	0
KCNH5	27133	broad.mit.edu	37	14	63246624	63246624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:63246624C>T	uc001xfx.2	-	10	1892	c.1841G>A	c.(1840-1842)GGA>GAA	p.G614E	KCNH5_uc001xfy.2_Intron|KCNH5_uc001xfz.1_Missense_Mutation_p.G556E	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	614	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GAAGATGTCTCCAAATACATC	0.428													12	8					0	0	0.00244969	0	0
FUT8	2530	broad.mit.edu	37	14	66082806	66082806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:66082806G>A	uc001xin.2	+	4	1511	c.314G>A	c.(313-315)AGA>AAA	p.R105K	FUT8_uc001xio.2_Missense_Mutation_p.R105K|FUT8_uc010tsp.1_5'UTR|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.R105K|FUT8_uc001xiq.2_5'UTR	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	105	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		AAACAGACCAGAAATGGTAGG	0.398													8	16					0	0	0.000157383	0	0
GALNTL1	57452	broad.mit.edu	37	14	69787427	69787427	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:69787427G>A	uc010aqu.1	+	2	271	c.178_splice	c.e2-1	p.V60_splice	GALNTL1_uc001xla.1_Splice_Site_p.V60_splice|GALNTL1_uc001xlb.1_Splice_Site_p.V60_splice	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide							Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		CTTCATCTCAGGTGACAGGAA	0.597													47	63					0	0	0.000781405	0	0
SLC10A1	6554	broad.mit.edu	37	14	70263759	70263759	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:70263759G>A	uc001xlr.2	-	1	248	c.114C>T	c.(112-114)ATC>ATT	p.I38I		NM_003049	NP_003040	Q14973	NTCP_HUMAN	solute carrier family 10, member 1	38	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(1)	1				all cancers(60;0.00228)|BRCA - Breast invasive adenocarcinoma(234;0.0137)|OV - Ovarian serous cystadenocarcinoma(108;0.0226)		GCGAGAGCATGATGAAGAACA	0.562													23	25					0	0	0.00229938	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713730	70713730	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:70713730C>T	uc010ttg.1	-	1	789	c.138G>A	c.(136-138)GTG>GTA	p.V46V		NR_003951				SubName: Full=ADAM21-like protein;												0						AATCATGGTTCACCACAACAA	0.423													28	63					0	0	0.00209593	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055757	72055757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:72055757G>A	uc001xms.2	+	2	1516	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K	SIPA1L1_uc001xmt.2_Missense_Mutation_p.E390K|SIPA1L1_uc001xmu.2_Missense_Mutation_p.E390K|SIPA1L1_uc001xmv.2_Missense_Mutation_p.E390K	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	390					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GGGCAGCACAGAGGACCTGAA	0.512													18	28					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	14	73079209	73079209	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:73079209C>T	uc010arh.1	-	1		c.595G>A								Homo sapiens cDNA FLJ14079 fis, clone HEMBB1002134, weakly similar to ZINC-FINGER PROTEIN NEURO-D4.																		GGTATATTTTCTTTTTCCTAT	0.453													57	119					0	0	0.000781405	0	0
RBM25	58517	broad.mit.edu	37	14	73538420	73538420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:73538420C>T	uc001xno.2	+	2	279	c.71C>T	c.(70-72)CCG>CTG	p.P24L	RBM25_uc001xnn.3_Missense_Mutation_p.P24L|RBM25_uc010ttu.1_Missense_Mutation_p.P24L|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	24					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		ATCCCACCCCCGCAGTTTCCA	0.448													29	45					0	0	0.00283554	0	0
TMEM63C	57156	broad.mit.edu	37	14	77718135	77718135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:77718135C>T	uc001xtf.2	+	22	2254	c.2042C>T	c.(2041-2043)TCT>TTT	p.S681F	TMEM63C_uc010asq.1_Missense_Mutation_p.S681F	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	681						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		TCGGCAGGTTCTCTCCACGCC	0.572													43	43					0	0	0.000781405	0	0
NRXN3	9369	broad.mit.edu	37	14	79432483	79432483	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:79432483C>T	uc001xun.2	+	9	1883	c.1392C>T	c.(1390-1392)AGC>AGT	p.S464S	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.S589S	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	837	Laminin G-like 4.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		ATCTGCAGAGCCTCATGTTTA	0.458													15	23					0	0	0.00074312	0	0
STON2	85439	broad.mit.edu	37	14	81743422	81743422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:81743422C>T	uc010tvu.1	-	4	2434	c.2233G>A	c.(2233-2235)GAA>AAA	p.E745K	STON2_uc001xvk.1_Missense_Mutation_p.E745K|STON2_uc010tvt.1_Missense_Mutation_p.E542K	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	745	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		AGGACACTTTCCCTGCGGAAG	0.532													32	56					0	0	0.00283554	0	0
CCDC88C	440193	broad.mit.edu	37	14	91779427	91779427	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:91779427C>T	uc010aty.2	-	15	2832	c.2733G>A	c.(2731-2733)AGG>AGA	p.R911R		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	911	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TGCTCACCTCCCTCAGAGTTG	0.572													9	16					0	0	0.000274275	0	0
FBLN5	10516	broad.mit.edu	37	14	92353575	92353575	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:92353575G>C	uc001xzx.3	-	7	1174	c.701C>G	c.(700-702)CCA>CGA	p.P234R	FBLN5_uc010aud.2_Missense_Mutation_p.P239R|FBLN5_uc010aue.2_Missense_Mutation_p.P275R	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	234	EGF-like 4; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TTCATATCCTGGGTCACAGCG	0.552													4	133					0	0	0.000602214	0	0
LGMN	5641	broad.mit.edu	37	14	93183727	93183727	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:93183727C>A	uc001yav.2	-	5	642	c.316G>T	c.(316-318)GAG>TAG	p.E106*	LGMN_uc001yat.2_Nonsense_Mutation_p.E106*|LGMN_uc001yau.2_Nonsense_Mutation_p.E106*|LGMN_uc001yaw.2_Nonsense_Mutation_p.E106*|LGMN_uc010aul.2_Missense_Mutation_p.E15D|LGMN_uc001yax.2_Nonsense_Mutation_p.E106*|LGMN_uc001yay.2_Nonsense_Mutation_p.E106*	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	106					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		CCACTCACCTCTCCAGTGTAG	0.443													41	63					9.58827e-17	3.97112e-16	0.000781405	1	0
GOLGA5	9950	broad.mit.edu	37	14	93290921	93290921	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:93290921C>T	uc001yaz.1	+	9	1833	c.1651C>T	c.(1651-1653)CGA>TGA	p.R551*		NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	551	Cytoplasmic (Potential).|Potential.				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		AGATCTTTATCGAACAAAGAA	0.299			T	RET	papillary thyroid								32	47					0	0	0.00148497	0	0
PRIMA1	145270	broad.mit.edu	37	14	94203701	94203701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:94203701G>A	uc001ybw.1	-	4	287	c.245C>T	c.(244-246)TCT>TTT	p.S82F	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	82	Extracellular (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		AGTGGGGCAAGAGGTAGAGTT	0.552													8	23					0	0	0.000274275	0	0
PRIMA1	145270	broad.mit.edu	37	14	94245555	94245555	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:94245555G>C	uc001ybw.1	-	3	238	c.196C>G	c.(196-198)CCC>GCC	p.P66A	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	66	PRAD.|Extracellular (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		ggtggcgggggtgggggcggc	0.358													2	0					0	0	6.4e-05	0	0
CCNK	8812	broad.mit.edu	37	14	99969075	99969075	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:99969075G>A	uc001ygi.3	+	8	895	c.765G>A	c.(763-765)CTG>CTA	p.L255L	CCNK_uc001ygg.3_Silent_p.L255L	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	255					cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				ACCAAATCCTGGATCTTTACT	0.403													19	26					0	0	0.00188189	0	0
EML1	2009	broad.mit.edu	37	14	100363551	100363551	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:100363551C>T	uc001ygs.2	+	7	816	c.747C>T	c.(745-747)TTC>TTT	p.F249F	EML1_uc010avt.1_Silent_p.F236F|EML1_uc010tww.1_Silent_p.F237F|EML1_uc001ygq.2_Silent_p.F268F|EML1_uc001ygr.2_Silent_p.F268F	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	249						cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				CCGTCTACTTCATCGCATCCG	0.493													33	26					0	0	0.000814825	0	0
WDR25	79446	broad.mit.edu	37	14	100847981	100847981	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:100847981C>T	uc010avx.2	+	2	813	c.720C>T	c.(718-720)TTC>TTT	p.F240F	WDR25_uc001yhm.2_Silent_p.F232F|WDR25_uc001yhn.2_Silent_p.F240F|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_5'Flank	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	240											0		Melanoma(154;0.212)				AAGTGCTTTTCCACCTGAGAG	0.498													10	29					0	0	0.000442599	0	0
WDR25	79446	broad.mit.edu	37	14	100934430	100934430	+	Missense_Mutation	SNP	C	G	G	rs35620735		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:100934430C>G	uc010avx.2	+	3	988	c.895C>G	c.(895-897)CGG>GGG	p.R299G	WDR25_uc001yhm.2_Missense_Mutation_p.R291G|WDR25_uc001yhn.2_Missense_Mutation_p.R299G|WDR25_uc010avy.2_Intron|WDR25_uc001yho.2_Missense_Mutation_p.R42G	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	299	WD 2.										0		Melanoma(154;0.212)				GCGGGCCGCCCGGTGGGCTCC	0.627													4	132					0	0	0.000602214	0	0
MIR539	664612	broad.mit.edu	37	14	101513721	101513721	+	RNA	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:101513721T>C	hsa-mir-539|MI0003514	+			c.64T>C			MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank|MIR655_hsa-mir-655|MI0003677_5'Flank																	0						ACAAGGACAATTTCTTTTTGA	0.478													24	35					0	0	0.000586117	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102452744	102452744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:102452744C>T	uc001yks.2	+	8	2346	c.2182C>T	c.(2182-2184)CGA>TGA	p.R728*		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	728	Interaction with DYNC1LI2 (By similarity).|Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GGTTCGGGGCCGAACTGGAAA	0.517													20	27					0	0	0.00188189	0	0
INF2	64423	broad.mit.edu	37	14	105178850	105178850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:105178850C>T	uc001ypb.2	+	17	2713	c.2570C>T	c.(2569-2571)TCC>TTC	p.S857F	INF2_uc010tyi.1_Missense_Mutation_p.S857F|INF2_uc001ypc.2_Missense_Mutation_p.S857F|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	857	FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		GTGTCTGCCTCCGTGGCCGAG	0.647													17	27					0	0	0.00074312	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418164	105418164	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:105418164G>A	uc010axc.1	-	7	3744	c.3624C>T	c.(3622-3624)ACC>ACT	p.T1208T	AHNAK2_uc001ypx.2_Silent_p.T1108T	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1208						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGAGGTCAGTGGTCTTGAGGT	0.657													47	16					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	106641514	106641514	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:106641514C>T	uc010tyt.1	-	1022		c.24454G>A								Parts of antibodies, mostly variable regions.												0						CAGCTGCCTCCTCCCTGGGGT	0.473													29	40					0	0	0.00127121	0	0
ADAM6	8755	broad.mit.edu	37	14	106745658	106745658	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:106745658C>T	uc010tyt.1	-	498		c.16753G>A								Parts of antibodies, mostly variable regions.												0						CCTCGGTTTTCAGGCTGTTCA	0.532													6	11					0	0	0.000442599	0	0
ADAM6	8755	broad.mit.edu	37	14	106926359	106926359	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:106926359C>T	uc010tyt.1	-	235		c.10196G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						CCAGACCCTTCCCCGGAGCTT	0.542													18	42					0	0	0.000958276	0	0
ADAM6	8755	broad.mit.edu	37	14	107066207	107066207	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:107066207G>A	uc010tyt.1	-	127		c.5995_splice	c.e127-1							Parts of antibodies, mostly variable regions.												0						TCCAGTCCATGGTGAGGAGCT	0.547													6	15					0	0	0.00116845	0	0
ADAM6	8755	broad.mit.edu	37	14	107218762	107218762	+	RNA	SNP	T	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr14:107218762T>A	uc010tyt.1	-	12		c.952A>T								Parts of antibodies, mostly variable regions.												0						TCTCTGGAGATGGTGAATCGG	0.552													61	114					0	0	0.000781405	0	0
OR4N4	283694	broad.mit.edu	37	15	22382732	22382732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:22382732C>T	uc001yuc.1	+	7	1241	c.260C>T	c.(259-261)TCT>TTT	p.S87F	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.S87F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GACTTCCTCTCTGAGAAAAAG	0.507													7	109					0	0	0.000308642	0	0
OR4N4	283694	broad.mit.edu	37	15	22382940	22382940	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:22382940C>T	uc001yuc.1	+	7	1449	c.468C>T	c.(466-468)TCC>TCT	p.S156S	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.S156S	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTGTCCACTCCATTATCCAGG	0.532													14	85					0	0	0.00121646	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413721	22413721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:22413721C>T	uc001yuf.2	+	1	20	c.20C>T	c.(19-21)TCT>TTT	p.S7F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GACTTCCTCTCTGAGAAGAAG	0.507													21	137					0	0	0.00106085	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890640	23890640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:23890640C>T	uc001ywj.3	-	1	536	c.441G>A	c.(439-441)ATG>ATA	p.M147I		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		CAGCAAAGATCATGCGGTCTT	0.597													15	30					0	0	0.000308642	0	0
C15orf2	23742	broad.mit.edu	37	15	24922593	24922593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:24922593C>T	uc001ywo.2	+	1	2053	c.1579C>T	c.(1579-1581)CTT>TTT	p.L527F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	527	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCCTCCTCCTCTTTCCTTCCT	0.527													47	103					0	0	0.000781405	0	0
GABRB3	2562	broad.mit.edu	37	15	26793166	26793167	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:26793166_26793167CC>TT	uc001zaz.2	-	9	1337_1338	c.1195_1196GG>AA	c.(1195-1197)GGA>AAA	p.G399K	GABRB3_uc010uae.1_Missense_Mutation_p.G314K|GABRB3_uc001zba.2_Missense_Mutation_p.G399K|GABRB3_uc001zbb.2_Missense_Mutation_p.G455K	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	399	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTACTGGATTCCTGAGTTGTCA	0.5													27	48					0	0	6.4e-05	0	0
C15orf53	400359	broad.mit.edu	37	15	38990679	38990679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:38990679G>A	uc001zkf.1	+	2	483	c.473G>A	c.(472-474)AGG>AAG	p.R158K		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	158											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		TCCACCAGGAGGAGAGCATGC	0.547													4	11					0	0	0.000602214	0	0
THBS1	7057	broad.mit.edu	37	15	39886347	39886347	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:39886347C>T	uc001zkh.2	+	20	3494	c.3315C>T	c.(3313-3315)TTC>TTT	p.F1105F	THBS1_uc010bbi.2_Silent_p.F577F	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	1105	TSP C-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GGAAAGATTTCACCGCCTACA	0.478													11	13					0	0	0.00185496	0	0
RPUSD2	27079	broad.mit.edu	37	15	40861740	40861740	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:40861740C>T	uc001zmd.1	+	1	204	c.204C>T	c.(202-204)TCC>TCT	p.S68S		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	68					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		TTGAGCTGTCCCCCGGGCCCC	0.682													11	13					0	0	0.00136819	0	0
LTK	4058	broad.mit.edu	37	15	41799333	41799333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:41799333C>T	uc001zoa.3	-	11	1679	c.1501G>A	c.(1501-1503)GGT>AGT	p.G501S	LTK_uc001zob.3_Missense_Mutation_p.G440S|LTK_uc010ucx.1_Missense_Mutation_p.R401K|LTK_uc010bcg.2_Missense_Mutation_p.G199S	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	501	Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		TCGGTGACACCTGGTGGCAGA	0.567										TSP Lung(18;0.14)			18	42					0	0	0.000958276	0	0
UBR1	197131	broad.mit.edu	37	15	43237663	43237664	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:43237663_43237664CC>AT	uc001zqq.2	-	47	5179_5180	c.5113_5114GG>AT	c.(5113-5115)GGC>ATC	p.G1705I		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1705					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		AAGGGGGTTGCCCCTCCTTTAG	0.406													14	26					0	0	6.4e-05	0	0
TMEM62	80021	broad.mit.edu	37	15	43476732	43476732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:43476732C>T	uc001zqr.2	+	14	2159	c.1880C>T	c.(1879-1881)TCC>TTC	p.S627F	TMEM62_uc010bda.2_Missense_Mutation_p.S462F|TMEM62_uc001zqt.2_Missense_Mutation_p.S196F|CCNDBP1_uc001zqu.2_5'Flank|CCNDBP1_uc001zqv.2_5'Flank|CCNDBP1_uc010bdc.2_5'Flank|CCNDBP1_uc010bdb.2_5'Flank|CCNDBP1_uc010udl.1_5'Flank|CCNDBP1_uc001zqw.2_5'Flank|CCNDBP1_uc001zqx.2_5'Flank|CCNDBP1_uc010bdd.2_5'Flank|CCNDBP1_uc001zqy.2_5'Flank	NM_024956	NP_079232	Q0P6H9	TMM62_HUMAN	transmembrane protein 62	627						integral to membrane				ovary(1)|breast(1)	2		all_cancers(109;1.16e-10)|all_epithelial(112;2.01e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;4.23e-07)		ACACTGAACTCCACCAAGTTT	0.507													39	66					0	0	0.00111076	0	0
TGM5	9333	broad.mit.edu	37	15	43552317	43552317	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:43552317G>A	uc001zrd.1	-	3	377	c.369C>T	c.(367-369)TCC>TCT	p.S123S	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	123					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	ACCCCTGGAAGGAGTCGATGT	0.622													43	44					0	0	0.000781405	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43873490	43873490	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:43873490G>A	uc001zrw.2	-	9	1057	c.874C>T	c.(874-876)CGA>TGA	p.R292*	PPIP5K1_uc001zrx.1_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zru.2_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zry.3_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zrv.2_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zrz.1_Nonsense_Mutation_p.R292*|PPIP5K1_uc010udr.1_Nonsense_Mutation_p.R292*	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	292					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						ACTGGATATCGAATCTCTTTC	0.512													66	87					0	0	0.000781405	0	0
CASC4	113201	broad.mit.edu	37	15	44673052	44673052	+	Missense_Mutation	SNP	C	T	T	rs150204732		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:44673052C>T	uc001zto.1	+	8	1249	c.950C>T	c.(949-951)CCT>CTT	p.P317L	CASC4_uc001ztp.2_Missense_Mutation_p.P317L|CASC4_uc001ztq.2_Missense_Mutation_p.P317L	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	317	Lumenal (Potential).					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		AAACAGAATCCTTCCAGTCCT	0.353													23	29					0	0	0.00178596	0	0
DUOXA1	90527	broad.mit.edu	37	15	45412962	45412962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:45412962C>T	uc001zuq.1	-	4	411	c.382G>A	c.(382-384)GAG>AAG	p.E128K	DUOXA1_uc010uem.1_Missense_Mutation_p.E83K|DUOXA1_uc001zup.2_Missense_Mutation_p.E128K|DUOXA1_uc010bec.2_Missense_Mutation_p.E128K|DUOXA1_uc001zur.1_Missense_Mutation_p.E83K|DUOXA1_uc010bed.1_Missense_Mutation_p.E83K	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	128	Extracellular (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		GTGAACTCCTCGTTGTAATTG	0.572													57	89					0	0	0.000781405	0	0
SPATA5L1	79029	broad.mit.edu	37	15	45694681	45694681	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:45694681C>T	uc001zve.2	+	1	163	c.54C>T	c.(52-54)CCC>CCT	p.P18P	uc001zvd.2_5'Flank|SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	18						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		AGCTGCTACCCTTAGACGCTA	0.652													6	7					0	0	0.000157383	0	0
CGNL1	84952	broad.mit.edu	37	15	57745996	57745996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:57745996G>A	uc002aeg.2	+	7	2246	c.2170G>A	c.(2170-2172)GAG>AAG	p.E724K	CGNL1_uc010bfw.2_Missense_Mutation_p.E724K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	724	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GGAGGACAGGGAGAAGGGAGC	0.562													9	28					0	0	0.00136819	0	0
HSP90AB4P	664618	broad.mit.edu	37	15	58985208	58985208	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:58985208G>A	uc002afh.1	-	1	117	c.117C>T	c.(115-117)TCC>TCT	p.S39S	ADAM10_uc002afd.1_Intron|ADAM10_uc010bgc.1_Intron|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Intron	NR_002927				RecName: Full=Putative heat shock protein HSP 90-beta 4;												0						CGTCCAACTTGGAAGGGTCTG	0.463													18	20					0	0	0.000566183	0	0
HERC1	8925	broad.mit.edu	37	15	63920935	63920935	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:63920935G>T	uc002amp.2	-	70	13194	c.13046C>A	c.(13045-13047)TCG>TAG	p.S4349*		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4349	RCC1 14.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GCGGCCAGCCGAGATCTGCCG	0.507													6	63					0.00116845	0.00476837	0.00116845	1	0
CILP	8483	broad.mit.edu	37	15	65490444	65490444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:65490444C>T	uc002aon.2	-	9	2361	c.2180G>A	c.(2179-2181)AGA>AAA	p.R727K		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	727					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CAGGAAGGTTCTGTCTTCTCT	0.498													52	100					0	0	0.000781405	0	0
SMAD6	4091	broad.mit.edu	37	15	67073700	67073700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:67073700G>A	uc002aqf.2	+	4	2241	c.1318G>A	c.(1318-1320)GAC>AAC	p.D440N	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.D179N	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	440	MH2.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						CAAGGTGTTCGACTTCGAGCG	0.726													9	17					0	0	0.000442599	0	0
ITGA11	22801	broad.mit.edu	37	15	68643004	68643005	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:68643004_68643005GG>AA	uc002ari.2	-	9	1097_1098	c.1010_1011CC>TT	c.(1009-1011)GCC>GTT	p.A337V	ITGA11_uc010bib.2_Missense_Mutation_p.A337V	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	337	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGTCCTTCAAGGCAGCCTCATC	0.485													16	44					0	0	6.4e-05	0	0
KIF23	9493	broad.mit.edu	37	15	69728068	69728068	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:69728068C>T	uc002asb.2	+	12	1347	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I	KIF23_uc002asc.2_Silent_p.I410I|KIF23_uc010bii.2_Silent_p.I300I|KIF23_uc010ukc.1_Silent_p.I227I|KIF23_uc010bih.1_RNA	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	410					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						TGCGGATGATCGTGTGTGTGA	0.368													35	44					0	0	0.00058488	0	0
THSD4	79875	broad.mit.edu	37	15	72030236	72030236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:72030236C>T	uc002atb.1	+	10	1875	c.1796C>T	c.(1795-1797)CCC>CTC	p.P599L	THSD4_uc010ukg.1_Missense_Mutation_p.P239L|THSD4_uc002ate.2_Missense_Mutation_p.P239L	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	599						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						AGATTTTCTCCCCATCGACCG	0.592													24	44					0	0	0.000586117	0	0
MYO9A	4649	broad.mit.edu	37	15	72122637	72122637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:72122637G>A	uc002atl.3	-	40	7326	c.6853C>T	c.(6853-6855)CGT>TGT	p.R2285C	MYO9A_uc002atj.2_Missense_Mutation_p.R216C|MYO9A_uc002atk.2_Missense_Mutation_p.R1080C	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2285	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTTCCTCGACGAATACGCCCC	0.443													13	18					0	0	0.00244969	0	0
HCN4	10021	broad.mit.edu	37	15	73622049	73622049	+	Silent	SNP	C	G	G	rs148875639	by1000genomes	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:73622049C>G	uc002avp.2	-	4	2449	c.1455G>C	c.(1453-1455)GCG>GCC	p.A485A		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	485					blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TGCCCACGGGCGCCTGCCGCC	0.617													11	20					0	0	0.000978159	0	0
CYP1A1	1543	broad.mit.edu	37	15	75012991	75012991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:75012991C>T	uc002ayp.3	-	7	1500	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.E196K|CYP1A1_uc010bjx.2_Missense_Mutation_p.E196K|CYP1A1_uc002ayq.3_Missense_Mutation_p.E460K|CYP1A1_uc010bjy.2_Missense_Mutation_p.E431K	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	460					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GCAATGGTCTCACCGATACAC	0.542									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				38	39					0	0	0.00195071	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044176	75044176	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:75044176G>A	uc002ayr.1	+	4	1087	c.1023G>A	c.(1021-1023)AGG>AGA	p.R341R		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	341					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	AGATACAGAGGAAGATCCAGA	0.463													25	44					0	0	0.000720815	0	0
UBE2Q2	92912	broad.mit.edu	37	15	76175716	76175716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:76175716C>T	uc002bbg.2	+	9	1221	c.835C>T	c.(835-837)CCA>TCA	p.P279S	UBE2Q2_uc002bbh.2_Missense_Mutation_p.P244S|UBE2Q2_uc010umn.1_Missense_Mutation_p.P263S|UBE2Q2_uc002bbi.2_Missense_Mutation_p.P160S	NM_173469	NP_775740	Q8WVN8	UB2Q2_HUMAN	ubiquitin-conjugating enzyme E2Q 2 isoform 1	279					protein K48-linked ubiquitination	cytoplasm	ATP binding|ubiquitin-protein ligase activity			ovary(2)	2						GGATAACTTTCCATTTGATCC	0.269													42	67					0	0	0.000680045	0	0
CIB2	10518	broad.mit.edu	37	15	78401717	78401717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:78401717G>A	uc002bdb.1	-	4	527	c.206C>T	c.(205-207)CCC>CTC	p.P69L	CIB2_uc002bdc.1_Missense_Mutation_p.P26L|CIB2_uc010ums.1_Missense_Mutation_p.P69L	NM_006383	NP_006374	O75838	CIB2_HUMAN	DNA-dependent protein kinase catalytic	69	EF-hand 1.						calcium ion binding				0						TTCTTTGAAGGGATTCTCCTG	0.498													29	31					0	0	0.000953801	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79064056	79064056	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:79064056G>A	uc002bej.3	-	15	2458	c.2247C>T	c.(2245-2247)CTC>CTT	p.L749L	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Silent_p.L749L	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	749	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						AGCCACCATTGAGGAAGTACT	0.642													14	26					0	0	0.000308642	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79064058	79064058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:79064058G>A	uc002bej.3	-	15	2456	c.2245C>T	c.(2245-2247)CTC>TTC	p.L749F	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Missense_Mutation_p.L749F	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	749	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CCACCATTGAGGAAGTACTTC	0.642													14	26					0	0	0.000308642	0	0
KIAA1199	57214	broad.mit.edu	37	15	81212561	81212561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:81212561G>A	uc002bfw.1	+	14	2184	c.1924G>A	c.(1924-1926)GAC>AAC	p.D642N	KIAA1199_uc010unn.1_Missense_Mutation_p.D642N	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	642										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCTCCCCTCGGACCGTGACAG	0.572													12	28					0	0	0.000978159	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85055759	85055759	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:85055759C>T	uc002bkm.2	-	6		c.801G>A				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						AGCCTCTCCTCCTGTTCACAC	0.547													6	13					0	0	0.000157383	0	0
AGBL1	123624	broad.mit.edu	37	15	86807958	86807958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:86807958G>A	uc002blz.1	+	10	1498	c.1418G>A	c.(1417-1419)AGA>AAA	p.R473K	AGBL1_uc002bma.1_Missense_Mutation_p.R204K|AGBL1_uc002bmb.1_Missense_Mutation_p.R167K	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	473					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GCCAAAGCCAGAAGAACCAGC	0.478													48	50					0	0	0.000781405	0	0
BLM	641	broad.mit.edu	37	15	91312395	91312396	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:91312395_91312396GG>TT	uc002bpr.2	+	11	2437_2438	c.2340_2341GG>TT	c.(2338-2343)CTGGAG>CTTTAG	p.E781*	BLM_uc010uqh.1_Nonsense_Mutation_p.E781*|BLM_uc010uqi.1_Nonsense_Mutation_p.E406*|BLM_uc010bnx.2_Nonsense_Mutation_p.E781*|BLM_uc002bps.1_Nonsense_Mutation_p.E343*	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	781	Helicase ATP-binding.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TTTCTACTCTGGAGAATCTCTA	0.381			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				14	724					0	0	6.4e-05	0	0
SV2B	9899	broad.mit.edu	37	15	91795186	91795187	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:91795186_91795187GG>AA	uc002bqv.2	+	2	980_981	c.589_590GG>AA	c.(589-591)GGA>AAA	p.G197K	SV2B_uc002bqt.2_Missense_Mutation_p.G197K|SV2B_uc010uqv.1_Missense_Mutation_p.G46K|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	197	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CTTCGTGCAGGGATATGGAGCC	0.579													79	123					0	0	6.4e-05	0	0
TARSL2	123283	broad.mit.edu	37	15	102201986	102201986	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr15:102201986G>A	uc002bxm.2	-	16	2056	c.2001C>T	c.(1999-2001)ATC>ATT	p.I667I	TARSL2_uc002bxl.2_Silent_p.I212I|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	667					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTCGATGAATGATCACAGGTC	0.323													20	32					0	0	0.00047179	0	0
WDR24	84219	broad.mit.edu	37	16	739256	739256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:739256G>A	uc002ciz.1	-	1	1145	c.385C>T	c.(385-387)CAC>TAC	p.H129Y		NM_032259	NP_115635	Q96S15	WDR24_HUMAN	WD repeat domain 24	191	WD 2.									ovary(1)|central_nervous_system(1)	2		Hepatocellular(780;0.0218)				TCGGTGGGGTGGAAGCAGACT	0.587													16	23					0	0	0.000566183	0	0
CCDC78	124093	broad.mit.edu	37	16	775518	775518	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:775518G>A	uc002cjg.2	-	4	436	c.330C>T	c.(328-330)GGC>GGT	p.G110G	CCDC78_uc002cjf.2_5'Flank|CCDC78_uc002cji.3_Silent_p.G184G|CCDC78_uc002cjj.3_Intron|CCDC78_uc002cjh.2_5'UTR|CCDC78_uc010uuo.1_Silent_p.G110G|CCDC78_uc002cjk.2_Silent_p.G110G|HAGHL_uc002cjl.1_5'Flank|HAGHL_uc002cjm.1_5'Flank|HAGHL_uc002cjn.1_5'Flank|HAGHL_uc002cjo.1_5'Flank|HAGHL_uc010uup.1_5'Flank	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78	110										central_nervous_system(1)	1		Hepatocellular(780;0.0218)				GGACTGCACAGCCCTGGCTGG	0.637													17	19					0	0	0.000958276	0	0
ABCA3	21	broad.mit.edu	37	16	2376429	2376429	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:2376429C>T	uc002cpy.1	-	4	751	c.39G>A	c.(37-39)AAG>AAA	p.K13K	ABCA3_uc010bsk.1_Silent_p.K13K|ABCA3_uc010bsl.1_Silent_p.K13K|ABCA3_uc002cpz.1_Silent_p.K13K	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	13					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GGGTGTAGTTCTTCCAGAGGA	0.612													7	9					0	0	0.000157383	0	0
MEFV	4210	broad.mit.edu	37	16	3294267	3294267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:3294267C>T	uc002cun.1	-	8	1786	c.1746G>A	c.(1744-1746)ATG>ATA	p.M582I		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	582	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	TGAACATTTCCATTTCTGAAC	0.517													17	24					0	0	0.00188189	0	0
SEC14L5	9717	broad.mit.edu	37	16	5053556	5053556	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:5053556C>G	uc002cye.2	+	11	1464	c.1284C>G	c.(1282-1284)TTC>TTG	p.F428L		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	428	CRAL-TRIO.					integral to membrane|intracellular	transporter activity				0						CCCGAGTCTTCCCCGTGCTCT	0.652													14	25					0	0	0.000566183	0	0
ABAT	18	broad.mit.edu	37	16	8862081	8862082	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:8862081_8862082CC>AT	uc002czc.3	+	10	801_802	c.635_636CC>AT	c.(634-636)TCC>TAT	p.S212Y	ABAT_uc002czd.3_Missense_Mutation_p.S212Y|ABAT_uc010buh.2_Missense_Mutation_p.S154Y|ABAT_uc010bui.2_Missense_Mutation_p.S212Y	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	212					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	AGCATCCTCTCCTTCATGGGCG	0.515													43	54					0	0	6.4e-05	0	0
TEKT5	146279	broad.mit.edu	37	16	10788374	10788375	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:10788374_10788375GG>AA	uc002czz.1	-	1	428_429	c.356_357CC>TT	c.(355-357)TCC>TTT	p.S119F		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	119	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						AGAGCCTCATGGAGTCATCCGT	0.649													36	63					0	0	6.4e-05	0	0
MPV17L	255027	broad.mit.edu	37	16	15501934	15501934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:15501934G>A	uc002ddn.2	+	4	700	c.556G>A	c.(556-558)GGG>AGG	p.G186R	MPV17L_uc002ddm.2_3'UTR	NM_001128423	NP_001121895	Q2QL34	MP17L_HUMAN	MPV17 mitochondrial membrane protein-like	186	Cytoplasmic.					integral to membrane|peroxisomal membrane					0						ATATACAAAGGGGACCAGTGC	0.468													3	7					0	0	6.4e-05	0	0
MYH11	4629	broad.mit.edu	37	16	15841753	15841753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:15841753C>T	uc002ddy.2	-	18	2335	c.2228G>A	c.(2227-2229)GGG>GAG	p.G743E	MYH11_uc002ddv.2_Missense_Mutation_p.G750E|MYH11_uc002ddw.2_Missense_Mutation_p.G743E|MYH11_uc002ddx.2_Missense_Mutation_p.G750E|MYH11_uc010bvg.2_Missense_Mutation_p.G575E	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	743	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GGCCTGCTTCCCGTCCATGAA	0.587			T	CBFB	AML								10	32					0	0	0.00185496	0	0
MYH11	4629	broad.mit.edu	37	16	15931849	15931849	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:15931849C>T	uc002ddy.2	-	2	368	c.261G>A	c.(259-261)GTG>GTA	p.V87V	MYH11_uc002ddv.2_Silent_p.V87V|MYH11_uc002ddw.2_Silent_p.V87V|MYH11_uc002ddx.2_Silent_p.V87V|MYH11_uc010bvg.2_5'UTR|MYH11_uc002deb.3_Silent_p.V87V	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	87	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CCATGTCCTCCACCTTGGAGA	0.542			T	CBFB	AML								44	72					0	0	0.0025221	0	0
ABCC1	4363	broad.mit.edu	37	16	16177255	16177255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:16177255G>A	uc010bvi.2	+	17	2323	c.2148G>A	c.(2146-2148)TGG>TGA	p.W716*	ABCC1_uc010bvj.2_Intron|ABCC1_uc010bvk.2_Nonsense_Mutation_p.W716*|ABCC1_uc010bvl.2_Nonsense_Mutation_p.W716*|ABCC1_uc010bvm.2_Intron|ABCC1_uc002del.3_Nonsense_Mutation_p.W600*	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	716	ABC transporter 1.|Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AGCAGGCCTGGATTCAGAATG	0.517													24	46					0	0	0.000586117	0	0
PDILT	204474	broad.mit.edu	37	16	20380929	20380929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:20380929G>A	uc002dhc.1	-	8	1224	c.1001C>T	c.(1000-1002)CCA>CTA	p.P334L		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	334					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TTGGACGGATGGGATATCGAC	0.468													52	69					0	0	0.000781405	0	0
LOC81691	81691	broad.mit.edu	37	16	20844374	20844374	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:20844374C>G	uc002dhv.2	+	13	1575	c.1312C>G	c.(1312-1314)CGG>GGG	p.R438G	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Missense_Mutation_p.R438G|LOC81691_uc002dhw.2_Missense_Mutation_p.R181G|LOC81691_uc002dhy.3_Missense_Mutation_p.R438G	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	438						nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						TTTTTTGACCCGGGAGACAGA	0.403													3	58					0	0	6.4e-05	0	0
DNAH3	55567	broad.mit.edu	37	16	20952783	20952783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:20952783G>A	uc010vbe.1	-	59	11594	c.11594C>T	c.(11593-11595)CCC>CTC	p.P3865L	DNAH3_uc010vbd.1_Missense_Mutation_p.P1300L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3865					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATAGACCACGGGGTACAACTT	0.483													104	105					0	0	0.000781405	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926467	22926467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:22926467G>A	uc002dli.2	+	2	760	c.688G>A	c.(688-690)GGC>AGC	p.G230S	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	230	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		GACCTTTGAGGGCCTCTCCTT	0.602													35	50					0	0	0.00195071	0	0
RBBP6	5930	broad.mit.edu	37	16	24578602	24578602	+	Silent	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:24578602G>C	uc002dmh.2	+	15	2768	c.1728G>C	c.(1726-1728)CCG>CCC	p.P576P	RBBP6_uc010vcb.1_Silent_p.P443P|RBBP6_uc002dmi.2_Silent_p.P576P|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Silent_p.P443P	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	576					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		ctctccctccgggtgttcctc	0.313													4	87					0	0	0.00024832	0	0
AQP8	343	broad.mit.edu	37	16	25228638	25228638	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:25228638C>T	uc002doc.2	+	2	214	c.132C>T	c.(130-132)GGC>GGT	p.G44G		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	44	Helical; (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		AACTGCTGGGCTCTGCTCTCT	0.622													60	88					0	0	0.000781405	0	0
GTF3C1	2975	broad.mit.edu	37	16	27499546	27499546	+	Splice_Site	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:27499546A>G	uc002dov.1	-	23	3740	c.3700_splice	c.e23+1	p.G1234_splice	GTF3C1_uc002dou.2_Splice_Site_p.G1234_splice	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide							transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TCACCACATAACCTTTCTTCT	0.532													38	75					0	0	0.00195071	0	0
APOB48R	55911	broad.mit.edu	37	16	28508931	28508931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:28508931C>T	uc002dqb.1	+	3	2552	c.2542C>T	c.(2542-2544)CCC>TCC	p.P848S	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.P386S	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	848	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						TGGGCTGGATCCCGCGGGCTC	0.637													9	4					0	0	0.000442599	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29891210	29891210	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:29891210C>T	uc002duq.3	-	9	1788	c.1548G>A	c.(1546-1548)TGG>TGA	p.W516*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Nonsense_Mutation_p.W446*|SEZ6L2_uc002dur.3_Nonsense_Mutation_p.W446*|SEZ6L2_uc002dus.3_Nonsense_Mutation_p.W402*|SEZ6L2_uc010vec.1_Nonsense_Mutation_p.W516*|SEZ6L2_uc010ved.1_Nonsense_Mutation_p.W472*	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	516	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CTGTGTCGTTCCAGTGGGGTT	0.627													74	99					0	0	0.000781405	0	0
MAPK3	5595	broad.mit.edu	37	16	30133240	30133240	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:30133240G>A	uc002dws.2	-	2	358	c.258C>T	c.(256-258)CTC>CTT	p.L86L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAPK3_uc002dwr.2_5'UTR|MAPK3_uc002dwv.3_Silent_p.L86L|MAPK3_uc002dwt.2_Silent_p.L86L|MAPK3_uc002dwu.2_RNA|MAPK3_uc010bzp.2_RNA	NM_002746	NP_002737	P27361	MK03_HUMAN	mitogen-activated protein kinase 3 isoform 1	86	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|cellular response to mechanical stimulus|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|interleukin-1-mediated signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription initiation from RNA polymerase I promoter	cytosol|nucleoplasm	ATP binding|MAP kinase activity|phosphatase binding				0					Arsenic trioxide(DB01169)|Isoproterenol(DB01064)|Simvastatin(DB00641)|Sulindac(DB00605)	GGATCTCCCGGAGCGTGCGCT	0.602													11	21					0	0	0.000978159	0	0
SRCAP	10847	broad.mit.edu	37	16	30748595	30748596	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:30748595_30748596AC>TT	uc002dze.1	+	34	7619_7620	c.7234_7235AC>TT	c.(7234-7236)ACT>TTT	p.T2412F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.T2207F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2412					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGCAAACCACACTCCTGTCATA	0.569													8	19					0	0	6.4e-05	0	0
ITGAD	3681	broad.mit.edu	37	16	31422778	31422778	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:31422778G>A	uc002ebv.1	+	14	1696	c.1647G>A	c.(1645-1647)CGG>CGA	p.R549R	ITGAD_uc010cap.1_Silent_p.R550R	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	549	FG-GAP 6.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						AGGAGAACCGGGGTGCTGTCT	0.622													43	89					0	0	0.000781405	0	0
SLC5A2	6524	broad.mit.edu	37	16	31501777	31501777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:31501777C>T	uc002ecf.3	+	14	1959	c.1940C>T	c.(1939-1941)CCG>CTG	p.P647L	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_5'Flank|C16orf58_uc002ech.1_3'UTR|C16orf58_uc002eci.1_3'UTR	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	647	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						AGCGAGGACCCGAGCTGGGCC	0.627													12	22					0	0	0.00244969	0	0
ZNF267	10308	broad.mit.edu	37	16	31896570	31896570	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:31896570C>T	uc002ecs.3	+	3	428	c.219C>T	c.(217-219)ATC>ATT	p.I73I		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	73	KRAB.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						CAGTAGCCATCCAGCCAGGTA	0.483													11	12					0	0	0.000978159	0	0
ABCC12	94160	broad.mit.edu	37	16	48167728	48167728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:48167728C>T	uc002efc.1	-	7	1344	c.998G>A	c.(997-999)AGA>AAA	p.R333K	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.R333K|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	333	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CAGTAATTTTCTTTCCCTCCT	0.443													12	40					0	0	0.00185496	0	0
MT4	84560	broad.mit.edu	37	16	56602761	56602761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:56602761C>T	uc002eje.1	+	3	186	c.106C>T	c.(106-108)CCC>TCC	p.P36S		NM_032935	NP_116324	P47944	MT4_HUMAN	metallothionein 4	36						cytoplasm	copper ion binding|zinc ion binding			ovary(1)	1						AGGCTGCTGTCCCTGCTGCCC	0.587													39	88					0	0	0.00170553	0	0
SLC12A3	6559	broad.mit.edu	37	16	56928513	56928513	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:56928513C>T	uc010ccm.2	+	22	2621	c.2592C>T	c.(2590-2592)TTC>TTT	p.F864F	SLC12A3_uc002ekd.3_Silent_p.F873F|SLC12A3_uc010ccn.2_Silent_p.F872F	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	864	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TCCGTGTGTTCGTAGGCGGCC	0.582													17	27					0	0	0.00152264	0	0
CES8	283848	broad.mit.edu	37	16	67029612	67029612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:67029612C>T	uc002eqv.2	+	2	183	c.140C>T	c.(139-141)CCC>CTC	p.P47L	CES8_uc010vix.1_Missense_Mutation_p.P47L|CES8_uc002eqw.2_Missense_Mutation_p.P7L	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	47						extracellular region	carboxylesterase activity				0						GGGAAGACACCCATCCAAGTC	0.522													32	40					0	0	0.00058488	0	0
TMEM208	29100	broad.mit.edu	37	16	67262721	67262721	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:67262721A>G	uc002esi.2	+	5	427	c.321A>G	c.(319-321)CTA>CTG	p.L107L	LRRC29_uc002ese.2_5'Flank|LRRC29_uc002esf.2_5'Flank|LRRC29_uc002esg.2_5'Flank|LRRC29_uc010vjg.1_5'Flank|TMEM208_uc002esj.2_RNA	NM_014187	NP_054906	Q9BTX3	TM208_HUMAN	HSPC171 protein	107	Helical; (Potential).					integral to membrane					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		ATGTGATCCTACTGACAGCCA	0.527													33	55					0	0	0.000953801	0	0
NFATC3	4775	broad.mit.edu	37	16	68225340	68225340	+	Missense_Mutation	SNP	C	T	T	rs3199162		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:68225340C>T	uc002evo.1	+	9	2978	c.2768C>T	c.(2767-2769)GCT>GTT	p.A923V	NFATC3_uc010vkl.1_Missense_Mutation_p.A444V|NFATC3_uc010vkm.1_Missense_Mutation_p.A444V|NFATC3_uc010vkn.1_Missense_Mutation_p.A444V|NFATC3_uc010vko.1_Missense_Mutation_p.A444V|NFATC3_uc010vkp.1_Missense_Mutation_p.A444V|NFATC3_uc010vkq.1_Missense_Mutation_p.A444V|NFATC3_uc002evl.2_Missense_Mutation_p.A444V|NFATC3_uc002evk.2_Missense_Mutation_p.A923V|NFATC3_uc002evm.1_Missense_Mutation_p.A923V|NFATC3_uc002evn.1_Missense_Mutation_p.A923V|NFATC3_uc010vkr.1_Missense_Mutation_p.A444V|NFATC3_uc010vks.1_Missense_Mutation_p.A444V|NFATC3_uc010vkt.1_Missense_Mutation_p.A444V|NFATC3_uc010vku.1_Missense_Mutation_p.A444V|NFATC3_uc010vkv.1_Missense_Mutation_p.A444V|NFATC3_uc010vkw.1_Missense_Mutation_p.A444V|NFATC3_uc010vkx.1_Missense_Mutation_p.A444V|NFATC3_uc010vky.1_Missense_Mutation_p.A444V|NFATC3_uc010vkz.1_Missense_Mutation_p.A444V|NFATC3_uc010vla.1_Missense_Mutation_p.A444V|NFATC3_uc010vlb.1_Missense_Mutation_p.A444V|NFATC3_uc010vlc.1_Missense_Mutation_p.A444V	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	923				A -> V (in Ref. 3; AAB46595/AAB46596/ AAB46597).	inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TCAGGGTCTGCTACAACAGCT	0.502													34	38					0	0	0.0024448	0	0
PRMT7	54496	broad.mit.edu	37	16	68349951	68349951	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:68349951C>T	uc002evy.1	+	3	345	c.69C>T	c.(67-69)CAC>CAT	p.H23H	PRMT7_uc002evx.1_Silent_p.H23H|PRMT7_uc010vlg.1_Silent_p.H23H	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	23					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		AGGATGAACACTATGATTACC	0.552													29	59					0	0	0.001512	0	0
COG8	84342	broad.mit.edu	37	16	69364885	69364886	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:69364885_69364886CC>TT	uc002ewy.2	-	5	1766_1767	c.1695_1696GG>AA	c.(1693-1698)CTGGAT>CTAAAT	p.D566N	PDF_uc002ewx.1_5'Flank	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	566					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						GCCTGGTCATCCAGGGTGAAAA	0.658													4	5					0	0	6.4e-05	0	0
SF3B3	23450	broad.mit.edu	37	16	70564701	70564701	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:70564701C>G	uc002ezf.2	+	4	662	c.451C>G	c.(451-453)CGA>GGA	p.R151G		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	151					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				TGCTGCAGCCCGACTTACCAT	0.398													4	135					0	0	0.00024832	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674572	71674572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:71674572G>A	uc002fau.2	+	3	938	c.875G>A	c.(874-876)CGA>CAA	p.R292Q	PHLPP2_uc002fav.2_RNA|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				skin(1)	1		Ovarian(137;0.125)				GCCAAGAGTCGAACAATGTTG	0.587													22	19					0	0	0.000586117	0	0
ZFP1	162239	broad.mit.edu	37	16	75203807	75203807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:75203807C>T	uc002fdo.2	+	4	963	c.799C>T	c.(799-801)CCC>TCC	p.P267S	ZFP1_uc002fdp.2_Missense_Mutation_p.P212S|ZFP1_uc010cgt.2_Missense_Mutation_p.P234S|ZFP1_uc010cgs.2_Missense_Mutation_p.P212S|ZFP1_uc002fdq.2_Missense_Mutation_p.P267S	NM_153688	NP_710155	Q6P2D0	ZFP1_HUMAN	zinc finger protein 1 homolog	267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGAGAAGAAGCCCTATGAGTG	0.468													19	16					0	0	0.00152264	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482753	76482753	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:76482753C>T	uc002feu.1	+	8	1217	c.832C>T	c.(832-834)CAG>TAG	p.Q278*	CNTNAP4_uc002fev.1_Nonsense_Mutation_p.Q190*|CNTNAP4_uc010chb.1_Nonsense_Mutation_p.Q253*|CNTNAP4_uc002fex.1_Nonsense_Mutation_p.Q281*|CNTNAP4_uc002few.2_Nonsense_Mutation_p.Q253*	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	278	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						AGTGCTCATCCAGCGTTTGGG	0.488													9	12					0	0	0.000442599	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482807	76482807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:76482807C>T	uc002feu.1	+	8	1271	c.886C>T	c.(886-888)CAT>TAT	p.H296Y	CNTNAP4_uc002fev.1_Missense_Mutation_p.H208Y|CNTNAP4_uc010chb.1_Missense_Mutation_p.H271Y|CNTNAP4_uc002fex.1_Missense_Mutation_p.H299Y|CNTNAP4_uc002few.2_Missense_Mutation_p.H271Y	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	296	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCATCATTTCCATGCACGGGG	0.423													11	18					0	0	0.000673444	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033703	82033703	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:82033703C>T	uc002fgu.2	-	3	323	c.195G>A	c.(193-195)GAG>GAA	p.E65E		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	65					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GGAAGGCTTTCTCTACGTCAG	0.473													41	89					0	0	0.00170553	0	0
HSD17B2	3294	broad.mit.edu	37	16	82131705	82131705	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:82131705G>A	uc002fgv.2	+	5	1000	c.828G>A	c.(826-828)TGG>TGA	p.W276*		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	276					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	GTGACAAGTGGGAAAAGCTGG	0.537													18	23					0	0	0.000958276	0	0
CDH13	1012	broad.mit.edu	37	16	83711825	83711825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:83711825G>A	uc002fgx.2	+	10	1417	c.1297G>A	c.(1297-1299)GAA>AAA	p.E433K	CDH13_uc010vns.1_Missense_Mutation_p.E480K|CDH13_uc010vnt.1_Missense_Mutation_p.E179K|CDH13_uc010vnu.1_Missense_Mutation_p.E394K	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	433	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		ATTGGACTATGAAATTTCTGC	0.527													20	23					0	0	0.00047179	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87451258	87451258	+	Silent	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:87451258A>C	uc002fjz.1	-	8	807	c.780T>G	c.(778-780)CCT>CCG	p.P260P	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Silent_p.P36P	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	260					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GGGAGCAGTGAGGCAAGGGGG	0.692													32	51					0	0	0.00178596	0	0
ZC3H18	124245	broad.mit.edu	37	16	88643950	88643951	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr16:88643950_88643951CC>TT	uc002fky.2	+	2	619_620	c.419_420CC>TT	c.(418-420)CCC>CTT	p.P140L	ZC3H18_uc010voy.1_Intron|ZC3H18_uc010voz.1_Missense_Mutation_p.P140L|ZC3H18_uc010vpa.1_Missense_Mutation_p.P140L	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	140						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GAGCCAGCTCCCGCCGTCCAGG	0.614													8	17					0	0	6.4e-05	0	0
RTN4RL1	146760	broad.mit.edu	37	17	1840680	1840680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:1840680C>T	uc002ftp.2	-	2	455	c.436G>A	c.(436-438)GGC>AGC	p.G146S		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	146	LRR 4.				axon regeneration	anchored to plasma membrane	receptor activity				0						TGCAGGCCGCCAAAGACGCCG	0.627													15	15					0	0	0.000422831	0	0
ZZEF1	23140	broad.mit.edu	37	17	3977629	3977629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:3977629G>A	uc002fxe.2	-	24	3564	c.3500C>T	c.(3499-3501)GCC>GTC	p.A1167V		NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1167							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCGAGGACCGGCCTTGAAGGT	0.498											OREG0024096	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	28					0	0	0.000781405	0	0
TEKT1	83659	broad.mit.edu	37	17	6716272	6716272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:6716272G>A	uc002gdt.2	-	6	840	c.730C>T	c.(730-732)CGA>TGA	p.R244*	TEKT1_uc010vth.1_Nonsense_Mutation_p.R98*	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	244					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				GACAGGATTCGATCCACCAGG	0.537													32	15					0	0	0.00283554	0	0
NEURL4	84461	broad.mit.edu	37	17	7227268	7227268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:7227268G>A	uc002gga.1	-	12	2133	c.2126C>T	c.(2125-2127)TCC>TTC	p.S709F	NEURL4_uc002ggb.1_Missense_Mutation_p.S709F|NEURL4_uc002ggc.1_Missense_Mutation_p.S55F	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	709							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGCCCCTGAGGACGGAGAGCT	0.617											OREG0024134	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	13					0	0	0.00278032	0	0
FGF11	2256	broad.mit.edu	37	17	7345189	7345189	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:7345189C>T	uc002ggz.2	+	3	650	c.399C>T	c.(397-399)CTC>CTT	p.L133L	FGF11_uc010vtw.1_3'UTR|FGF11_uc010cmh.1_RNA|FGF11_uc010cmi.2_Silent_p.L9L|FGF11_uc010vtx.1_Silent_p.L74L|FGF11_uc002gha.3_Silent_p.L9L	NM_004112	NP_004103	Q92914	FGF11_HUMAN	fibroblast growth factor 11	133					cell-cell signaling|nervous system development|signal transduction		growth factor activity				0		Prostate(122;0.157)				AGGGACTGCTCTACAGTTCGG	0.557													12	8					0	0	0.00185496	0	0
MYH3	4621	broad.mit.edu	37	17	10536071	10536071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:10536071G>A	uc002gmq.1	-	33	4755	c.4678C>T	c.(4678-4680)CTC>TTC	p.L1560F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1560	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TGGATTCGGAGGATCTTGGCT	0.448													78	39					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	17	16722502	16722503	+	RNA	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:16722502_16722503GG>AA	uc002gqq.1	-	5		c.1228_1229CC>TT								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGGGAATCAAGGATTAGTGAGT	0.569													10	4					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	17	25757077	25757077	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:25757077G>A	uc002gzg.2	+	12		c.1911G>A								Homo sapiens similar to ubiquitin specific protease 6, mRNA (cDNA clone IMAGE:5168266), with apparent retained intron.																		TTCCTGCAGTGGAACTCTATG	0.627													3	4					0	0	0.000602214	0	0
SUPT6H	6830	broad.mit.edu	37	17	27008341	27008341	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:27008341C>T	uc002hby.2	+	12	1507	c.1417C>T	c.(1417-1419)CGA>TGA	p.R473*	SUPT6H_uc010crt.2_Nonsense_Mutation_p.R473*	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	473					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					TTATTATGGCCGAGACATCCC	0.448													44	41					0	0	0.0025221	0	0
SPACA3	124912	broad.mit.edu	37	17	31323938	31323938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:31323938G>A	uc002hhs.1	+	3	496	c.421G>A	c.(421-423)GGG>AGG	p.G141R	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	141	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			CACCAACAACGGGATCTTCCA	0.592													33	73					0	0	0.000953801	0	0
C17orf66	256957	broad.mit.edu	37	17	34192286	34192286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:34192286C>T	uc002hke.1	-	3	402	c.253G>A	c.(253-255)GAC>AAC	p.D85N	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.D85N|C17orf66_uc010wcm.1_Missense_Mutation_p.D51N	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	85							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TCATACAGGTCGTGCCAGTGC	0.512													22	61					0	0	0.001512	0	0
RDM1	201299	broad.mit.edu	37	17	34249679	34249679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:34249679C>T	uc002hkh.2	-	5	618	c.569G>A	c.(568-570)GGA>GAA	p.G190E	RDM1_uc010cty.2_Intron|RDM1_uc010ctz.2_Intron|RDM1_uc010cua.2_Missense_Mutation_p.G167E|RDM1_uc002hkg.3_Intron|RDM1_uc010cub.2_RNA|RDM1_uc010cud.2_Intron|RDM1_uc010cuf.2_RNA|RDM1_uc010cue.2_RNA|RDM1_uc010cug.2_Intron|RDM1_uc010cuc.2_Intron|RDM1_uc010wco.1_Missense_Mutation_p.D111N|RDM1_uc010wcp.1_Missense_Mutation_p.G167E|RDM1_uc002hki.2_Missense_Mutation_p.G190E	NM_145654	NP_663629	Q8NG50	RDM1_HUMAN	RAD52 motif 1 isoform 1	190					DNA recombination|DNA repair	Cajal body|cytoplasm|nucleolus|PML body	DNA binding|nucleotide binding|RNA binding			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TGATAATGGTCCTAAATCCAA	0.348								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					50	169					0	0	0.000781405	0	0
SRCIN1	80725	broad.mit.edu	37	17	36708269	36708269	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:36708269G>A	uc002hqd.2	-	14	2805	c.2580C>T	c.(2578-2580)TTC>TTT	p.F860F	SRCIN1_uc002hqf.1_Silent_p.F732F|SRCIN1_uc002hqe.2_Silent_p.F714F|SRCIN1_uc002hqg.2_Silent_p.F166F	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	732					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						GTGGCATTTCGAAGTCCACGC	0.622													29	54					0	0	0.000814825	0	0
FBXO47	494188	broad.mit.edu	37	17	37118295	37118296	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:37118295_37118296CC>TT	uc002hrc.2	-	3	386_387	c.186_187GG>AA	c.(184-189)AAGGAT>AAAAAT	p.D63N		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	63	F-box.										0						ATGCTGATATCCTTCACTACCA	0.332													25	90					0	0	6.4e-05	0	0
MED1	5469	broad.mit.edu	37	17	37580045	37580045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:37580045G>A	uc002hrv.3	-	12	1093	c.881C>T	c.(880-882)GCC>GTC	p.A294V	MED1_uc010wee.1_Missense_Mutation_p.A122V|MED1_uc002hru.2_Missense_Mutation_p.A294V	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	294	Interaction with ESR1.|Interaction with the Mediator complex.|Interaction with the Mediator complex and THRA.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		AACACTGTTGGCACTGGTGAT	0.428										HNSCC(31;0.082)			16	56					0	0	0.000958276	0	0
MED24	9862	broad.mit.edu	37	17	38183177	38183177	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:38183177G>A	uc002htt.2	-	17	1954	c.1641C>T	c.(1639-1641)TTC>TTT	p.F547F	MED24_uc010wes.1_Silent_p.F407F|MED24_uc010wet.1_Intron|MED24_uc002hts.2_Silent_p.F572F|MED24_uc002htu.2_Silent_p.F534F|MED24_uc010cwn.2_Silent_p.F534F|MED24_uc010weu.1_Silent_p.F457F|MED24_uc010wev.1_Silent_p.F497F|MED24_uc010wew.1_Silent_p.F488F|MED24_uc010wex.1_Silent_p.F252F|SNORD124_uc010wey.1_5'Flank	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	547					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					AGTCGGGGCGGAAGCAGGGGT	0.637											OREG0024386	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	45					0	0	0.000157383	0	0
KRT31	3881	broad.mit.edu	37	17	39553173	39553173	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:39553173G>A	uc002hwn.2	-	2	476	c.423C>T	c.(421-423)TTC>TTT	p.F141F	KRT31_uc010cxn.2_Silent_p.F141F	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	141	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				ACTTGGTTCTGAAATCATCCG	0.458													37	100					0	0	0.00195071	0	0
KRT36	8689	broad.mit.edu	37	17	39643315	39643315	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:39643315G>A	uc002hwt.2	-	6	1095	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	365	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GGTCGCAGCGGATCTCAGACA	0.647													48	53					0	0	0.000781405	0	0
KRT36	8689	broad.mit.edu	37	17	39644899	39644899	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:39644899C>T	uc002hwt.2	-	2	537	c.537G>A	c.(535-537)CGG>CGA	p.R179R		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	179	Rod.|Coil 1B.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CTCACTTGGTCCGGAAGTCGT	0.562													44	93					0	0	0.000781405	0	0
JUP	3728	broad.mit.edu	37	17	39913718	39913718	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:39913718G>A	uc002hxq.2	-	12	2272	c.1995C>T	c.(1993-1995)TCC>TCT	p.S665S	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Silent_p.S665S|JUP_uc002hxs.2_Silent_p.S665S	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	665					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		TGAGCTCCACGGACACGCGCT	0.532													29	72					0	0	0.0024448	0	0
ACLY	47	broad.mit.edu	37	17	40042418	40042418	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:40042418G>A	uc002hyg.2	-	18	2182	c.2019C>T	c.(2017-2019)ATC>ATT	p.I673I	ACLY_uc002hyh.2_Silent_p.I663I|ACLY_uc002hyi.2_Silent_p.I727I|ACLY_uc010wfx.1_Silent_p.I717I|ACLY_uc010wfy.1_Silent_p.I402I	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	673					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				TCCGAGAGATGATATTGTTGA	0.582													133	116					0	0	0.000781405	0	0
STAT5B	6777	broad.mit.edu	37	17	40370242	40370242	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:40370242G>T	uc002hzh.2	-	9	1265	c.1096C>A	c.(1096-1098)CCC>ACC	p.P366T	STAT5B_uc002hzi.3_Missense_Mutation_p.P366T	NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	366					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	ACCTGGGGGGGGTTCATGTGC	0.572													23	21					9.95505e-16	4.1172e-15	0.00229938	1	0
VPS25	84313	broad.mit.edu	37	17	40926710	40926710	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:40926710G>A	uc002ibi.2	+	3	286	c.246G>A	c.(244-246)AGG>AGA	p.R82R		NM_032353	NP_115729	Q9BRG1	VPS25_HUMAN	vacuolar protein sorting 25	82					cellular membrane organization|endosome transport|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endosome membrane|nucleoplasm					0		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		AGGAACTGAGGAAGAAAGGTG	0.398													21	28					0	0	0.00278032	0	0
DHX8	1659	broad.mit.edu	37	17	41582061	41582061	+	Silent	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:41582061C>A	uc002idu.1	+	12	1669	c.1596C>A	c.(1594-1596)CCC>CCA	p.P532P	DHX8_uc010wif.1_Silent_p.P441P|DHX8_uc010wig.1_Silent_p.P532P	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	532						catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		GGATGATGCCCAATGATATTC	0.493													12	300					0.00244969	0.00992093	0.00244969	1	0
MPP3	4356	broad.mit.edu	37	17	41898295	41898295	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:41898295C>T	uc002iei.3	-	11	982	c.816G>A	c.(814-816)CAG>CAA	p.Q272Q	MPP3_uc002ieh.2_Silent_p.Q297Q|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Silent_p.Q272Q|MPP3_uc010wik.1_Silent_p.Q297Q	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	272	SH3.				signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		CTCGCTTGGCCTGCCACCACG	0.677													12	23					0	0	0.000978159	0	0
UBTF	7343	broad.mit.edu	37	17	42288974	42288974	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:42288974C>T	uc002igb.2	-	9	1114	c.1047G>A	c.(1045-1047)CAG>CAA	p.Q349Q	UBTF_uc002igc.2_Silent_p.Q312Q|UBTF_uc010czs.2_Silent_p.Q349Q|UBTF_uc002igd.2_Silent_p.Q312Q|UBTF_uc010czt.2_Silent_p.Q349Q|UBTF_uc002ige.2_Silent_p.Q312Q	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	349	HMG box 3.				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CACAGCTCACCTGATCACACT	0.597													54	135					0	0	0.000781405	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43474304	43474304	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:43474304C>T	uc002iix.2	-	11	1355	c.906G>A	c.(904-906)GAG>GAA	p.E302E	ARHGAP27_uc010dak.2_Silent_p.E275E	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	643					positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					GCGCGTCCTCCTCTTTCTCCT	0.667													53	36					0	0	0.000781405	0	0
KIAA1267	284058	broad.mit.edu	37	17	44248240	44248241	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:44248240_44248241CG>AT	uc002ikb.2	-	1	1354_1355	c.1269_1270CG>AT	c.(1267-1272)CCCGAG>CCATAG	p.E424*	KIAA1267_uc002ikc.2_Nonsense_Mutation_p.E424*|KIAA1267_uc002ikd.2_Nonsense_Mutation_p.E424*|KIAA1267_uc010dav.2_Nonsense_Mutation_p.E424*	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	424						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				TGACGCTGCTCGGGATCAGCTC	0.46													7	219					0	0	6.4e-05	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47243605	47243605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:47243605G>A	uc002ion.2	+	9	1323	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	B4GALNT2_uc010wlt.1_Missense_Mutation_p.E336K|B4GALNT2_uc010wlu.1_Missense_Mutation_p.E362K	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	422	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			GGAGAAAACAGAACTGGACGT	0.468													37	40					0	0	0.0025221	0	0
DLX3	1747	broad.mit.edu	37	17	48069074	48069074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:48069074G>A	uc002ipy.2	-	3	897	c.671C>T	c.(670-672)CCG>CTG	p.P224L		NM_005220	NP_005211	O60479	DLX3_HUMAN	distal-less homeobox 3	224						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCAGGGGCCGGAGTGGAGTG	0.647													13	33					0	0	0.00185496	0	0
SGCA	6442	broad.mit.edu	37	17	48245370	48245370	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:48245370G>A	uc002iqi.2	+	4	411	c.375G>A	c.(373-375)GGG>GGA	p.G125G	SGCA_uc010wmh.1_Silent_p.G23G|SGCA_uc002iqj.2_Silent_p.G125G|SGCA_uc010wmi.1_RNA	NM_000023	NP_000014	Q16586	SGCA_HUMAN	sarcoglycan, alpha isoform 1 precursor	125	Extracellular (Potential).				muscle contraction|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(2)	2						TGGAGATTGGGGACCCAGAAG	0.602													27	65					0	0	0.00106085	0	0
COL1A1	1277	broad.mit.edu	37	17	48267367	48267367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:48267367G>A	uc002iqm.2	-	36	2680	c.2554C>T	c.(2554-2556)CCC>TCC	p.P852S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	852	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTCACAATGGGGCCAGGGGGT	0.652			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						37	64					0	0	0.00195071	0	0
TMEM92	162461	broad.mit.edu	37	17	48355984	48355985	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:48355984_48355985CC>TT	uc002iqn.1	+	3	193_194	c.163_164CC>TT	c.(163-165)CCC>TTC	p.P55F		NM_153229	NP_694961	Q6UXU6	TMM92_HUMAN	transmembrane protein 92 precursor	55	Extracellular (Potential).					integral to membrane					0						CTTCCCTGGCCCCGTGAGGTGA	0.634													30	10					0	0	6.4e-05	0	0
ABCC3	8714	broad.mit.edu	37	17	48761431	48761431	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:48761431T>G	uc002isl.2	+	28	4156	c.4076T>G	c.(4075-4077)CTC>CGC	p.L1359R	ABCC3_uc002isn.2_Missense_Mutation_p.L113R	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1359	Cytoplasmic (By similarity).|ABC transporter 2.			L -> F (in Ref. 11; AAB71756).	bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GACATCGGCCTCCATGACCTG	0.617													14	34					0	0	0.000422831	0	0
COIL	8161	broad.mit.edu	37	17	55027331	55027331	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:55027331G>A	uc002iuu.2	-	2	1303	c.1272C>T	c.(1270-1272)TCC>TCT	p.S424S		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	424	2 X 4 AA repeats of S-L-P-A.					Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					TTACAACACAGGAAACAGGAT	0.443													35	99					0	0	0.000692331	0	0
CUEDC1	404093	broad.mit.edu	37	17	55950091	55950091	+	Silent	SNP	G	A	A	rs148211596	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:55950091G>A	uc002ivd.1	-	5	1436	c.717C>T	c.(715-717)TTC>TTT	p.F239F	CUEDC1_uc002ive.1_Silent_p.F239F	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	239										skin(2)	2						CGTTCTGCAGGAAAAGCGCGA	0.637													36	70					0	0	0.00148497	0	0
HSF5	124535	broad.mit.edu	37	17	56544271	56544271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:56544271G>A	uc002iwi.1	-	3	1119	c.995C>T	c.(994-996)TCC>TTC	p.S332F		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	332						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTGTGCATAGGAAGAGGCATT	0.438													77	67					0	0	0.000781405	0	0
C17orf47	284083	broad.mit.edu	37	17	56620267	56620267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:56620267C>T	uc002iwq.1	-	1	1417	c.1281G>A	c.(1279-1281)TGG>TGA	p.W427*	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	427										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCAAGGGCCACCATGAGGAGT	0.532													96	65					0	0	0.000781405	0	0
HEATR6	63897	broad.mit.edu	37	17	58145003	58145003	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:58145003G>T	uc002iyk.1	-	8	1047	c.1030C>A	c.(1030-1032)CCA>ACA	p.P344T	HEATR6_uc010ddk.1_5'Flank|HEATR6_uc010wos.1_Missense_Mutation_p.P176T	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	344							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			CCAGTGACTGGGGCTGCCTCT	0.483													6	73					0.00116845	0.00476837	0.00116845	1	0
CA4	762	broad.mit.edu	37	17	58234034	58234034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:58234034G>A	uc002iym.3	+	3	320	c.226G>A	c.(226-228)GAT>AAT	p.D76N	CA4_uc010wou.1_RNA	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	76					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CTCTGGCTACGATAAGAAGCA	0.572													18	42					0	0	0.00229938	0	0
ABCA8	10351	broad.mit.edu	37	17	66903943	66903943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:66903943G>A	uc002jhp.2	-	16	2275	c.2096C>T	c.(2095-2097)TCA>TTA	p.S699L	ABCA8_uc002jhq.2_Missense_Mutation_p.S739L|ABCA8_uc010wqq.1_Missense_Mutation_p.S739L|ABCA8_uc010wqr.1_Missense_Mutation_p.S678L|ABCA8_uc002jhr.2_Missense_Mutation_p.S739L	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	699						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCTTTTGGCTGATAATTTGGC	0.313													35	29					0	0	0.000814825	0	0
ABCA8	10351	broad.mit.edu	37	17	66936982	66936982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:66936982G>A	uc002jhp.2	-	3	397	c.218C>T	c.(217-219)TCC>TTC	p.S73F	ABCA8_uc002jhq.2_Missense_Mutation_p.S73F|ABCA8_uc010wqq.1_Missense_Mutation_p.S73F|ABCA8_uc010wqr.1_Missense_Mutation_p.S12F|ABCA8_uc002jhr.2_Missense_Mutation_p.S73F|ABCA8_uc002jhs.2_Missense_Mutation_p.S73F|ABCA8_uc002jht.2_Missense_Mutation_p.S73F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	73						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AGAAAATCTGGATTCATTAAA	0.383													41	25					0	0	0.00195071	0	0
ABCA6	23460	broad.mit.edu	37	17	67075144	67075144	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:67075144C>T	uc002jhw.1	-	39	4999	c.4824G>A	c.(4822-4824)TGG>TGA	p.W1608*		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1608					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GGAGGAGTTTCCATCTCATTG	0.308													26	19					0	0	0.00127121	0	0
ABCA6	23460	broad.mit.edu	37	17	67110993	67110993	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:67110993G>A	uc002jhw.1	-	13	1867	c.1692C>T	c.(1690-1692)TTC>TTT	p.F564F	ABCA6_uc002jhx.1_Silent_p.F17F	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	564	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ATTGAACATTGAATTGAGGAC	0.383													14	33					0	0	0.00185496	0	0
KIF19	124602	broad.mit.edu	37	17	72350551	72350551	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:72350551C>T	uc002jkm.3	+	18	2697	c.2559C>T	c.(2557-2559)GCC>GCT	p.A853A		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	853					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CGGGCGAGGCCCCGTCCCGGG	0.682													14	14					0	0	0.000308642	0	0
CD300A	11314	broad.mit.edu	37	17	72469840	72469840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:72469840G>A	uc002jkv.2	+	2	527	c.206G>A	c.(205-207)GGA>GAA	p.G69E	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	69	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						GGGTCAGCAGGAAAAAGGAAC	0.517													42	35					0	0	0.00285205	0	0
SLC25A19	60386	broad.mit.edu	37	17	73279576	73279576	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:73279576G>A	uc002jns.3	-	3	1297	c.387C>T	c.(385-387)GCC>GCT	p.A129A	SLC25A19_uc010dge.2_Intron|SLC25A19_uc002jnv.3_Silent_p.A129A|SLC25A19_uc002jnu.3_Silent_p.A129A|SLC25A19_uc002jnw.3_Silent_p.A129A|SLC25A19_uc002jnt.3_Silent_p.A129A	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	129	Helical; Name=3; (Potential).|Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			TGGCCATACAGGCAGCCAGGC	0.592													16	13					0	0	0.00074312	0	0
KIAA0195	9772	broad.mit.edu	37	17	73493269	73493269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:73493269C>T	uc002jnz.3	+	26	3672	c.3397C>T	c.(3397-3399)CCT>TCT	p.P1133S	KIAA0195_uc010wsa.1_Missense_Mutation_p.P1143S|KIAA0195_uc010wsb.1_Missense_Mutation_p.P773S|KIAA0195_uc002job.3_Missense_Mutation_p.P141S	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	1133	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTTTTGCTACCCTCTGCTCAG	0.572													41	43					0	0	0.000781405	0	0
LLGL2	3993	broad.mit.edu	37	17	73567141	73567141	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:73567141C>T	uc002joh.2	+	17	2290	c.2136C>T	c.(2134-2136)TTC>TTT	p.F712F	LLGL2_uc002joi.2_Silent_p.F712F|LLGL2_uc010dgg.1_Silent_p.F712F|LLGL2_uc002joj.2_Silent_p.F701F|LLGL2_uc010wsd.1_Silent_p.F339F	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	712					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TCACAGGCTTCGTCCGGACCC	0.652													48	132					0	0	0.000781405	0	0
TRIM65	201292	broad.mit.edu	37	17	73887135	73887135	+	Missense_Mutation	SNP	C	G	G	rs145909647		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:73887135C>G	uc002jpx.2	-	6	1315	c.1279G>C	c.(1279-1281)GTC>CTC	p.V427L		NM_173547	NP_775818	Q6PJ69	TRI65_HUMAN	tripartite motif-containing 65	427	B30.2/SPRY.					intracellular	zinc ion binding				0			Epithelial(20;7.53e-06)|all cancers(21;9.11e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCCTCCTGGACGCAGAGCCCC	0.692													4	10					0	0	0.00024832	0	0
C1QTNF1	114897	broad.mit.edu	37	17	77043939	77043939	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:77043939G>A	uc002jwp.2	+	4	955	c.615G>A	c.(613-615)AAG>AAA	p.K205K	C1QTNF1_uc002jwq.2_Silent_p.K123K|C1QTNF1_uc002jwr.3_Silent_p.K215K|C1QTNF1_uc002jws.2_Silent_p.K205K|C1QTNF1_uc002jwt.2_Silent_p.K303K	NM_030968	NP_112230	Q9BXJ1	C1QT1_HUMAN	C1q and tumor necrosis factor related protein 1	205	C1q.					collagen				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.0294)|OV - Ovarian serous cystadenocarcinoma(97;0.201)			GGAACCAGAAGGAGACCTACC	0.557													89	49					0	0	0.000781405	0	0
CCDC40	55036	broad.mit.edu	37	17	78023898	78023898	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:78023898G>A	uc010dht.2	+	7	1002	c.975G>A	c.(973-975)CAG>CAA	p.Q325Q	CCDC40_uc010wub.1_Silent_p.Q325Q|CCDC40_uc002jxm.3_Silent_p.Q108Q	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	325					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCCAGCGGCAGGAGCTGGGGG	0.622													44	14					0	0	0.000781405	0	0
SLC26A11	284129	broad.mit.edu	37	17	78211392	78211392	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:78211392C>T	uc002jyb.1	+	9	1253	c.984C>T	c.(982-984)TTC>TTT	p.F328F	SLC26A11_uc002jyc.1_Silent_p.F328F|SLC26A11_uc002jyd.1_Silent_p.F328F|SLC26A11_uc010dhv.1_Silent_p.F328F	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	328	Helical; (Potential).			F -> S (in Ref. 2; AAO26673).		endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CCAAAGCCTTCGGTAAGACGC	0.607													10	23					0	0	0.00136819	0	0
RPTOR	57521	broad.mit.edu	37	17	78931465	78931465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:78931465C>T	uc002jyt.1	+	29	4217	c.3412C>T	c.(3412-3414)CTC>TTC	p.L1138F	RPTOR_uc010wug.1_Missense_Mutation_p.L980F|RPTOR_uc002jyu.1_Missense_Mutation_p.L31F	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1138	WD 3.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GACCGGCCTCCTCATGAGCTC	0.622													110	76					0	0	0.000781405	0	0
PCYT2	5833	broad.mit.edu	37	17	79863007	79863007	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:79863007G>A	uc002kcf.1	-	12	1056	c.993C>T	c.(991-993)TTC>TTT	p.F331F	PCYT2_uc010wva.1_Silent_p.F299F|PCYT2_uc010wvb.1_Silent_p.F299F|PCYT2_uc002kce.1_Silent_p.F253F|PCYT2_uc002kcg.1_Silent_p.F360F|PCYT2_uc002kch.1_Silent_p.F349F|PCYT2_uc002kci.1_Silent_p.F290F|PCYT2_uc010dii.1_Silent_p.F309F|PCYT2_uc010wvc.1_Silent_p.F253F	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	331	Catalytic 2 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CAATCTGACGGAAGATGCCCC	0.622													13	13					0	0	0.00074312	0	0
FASN	2194	broad.mit.edu	37	17	80040272	80040272	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:80040272G>A	uc002kdu.2	-	35	6055	c.5938C>T	c.(5938-5940)CTG>TTG	p.L1980L	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1980	Beta-ketoacyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TGGTTCTCCAGCAAGCCATCT	0.647													11	24					0	0	0.00136819	0	0
ZNF750	79755	broad.mit.edu	37	17	80790094	80790094	+	Silent	SNP	G	T	T	rs34808874	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr17:80790094G>T	uc002kga.2	-	2	548	c.237C>A	c.(235-237)CCC>CCA	p.P79P	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	79						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCGTGGCATCGGGCTGGTTGG	0.507													7	99					0.00198382	0.00805091	0.00198382	1	0
KIAA0802	23255	broad.mit.edu	37	18	8784328	8784328	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:8784328C>T	uc002knr.2	+	6	1360	c.1218C>T	c.(1216-1218)CCC>CCT	p.P406P	KIAA0802_uc002knq.2_Silent_p.P406P|KIAA0802_uc010dkw.1_Silent_p.P244P	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	757											0						TGCCCCAGCCCAAGCGGGAAG	0.672													19	30					0	0	0.00188189	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258459	9258459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:9258459C>T	uc002knv.2	+	9	5451	c.5194C>T	c.(5194-5196)CCT>TCT	p.P1732S	ANKRD12_uc002knw.2_Missense_Mutation_p.P1709S|ANKRD12_uc002knx.2_Missense_Mutation_p.P1709S|ANKRD12_uc010dkx.1_Missense_Mutation_p.P1439S	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1732						nucleus				ovary(2)|central_nervous_system(1)	3						AAACCAAATCCCTCAAAGAAT	0.343													8	18					0	0	0.000978159	0	0
LAMA3	3909	broad.mit.edu	37	18	21441765	21441765	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:21441765G>A	uc002kuq.2	+	35	4664	c.4578G>A	c.(4576-4578)GGG>GGA	p.G1526G	LAMA3_uc002kur.2_Silent_p.G1526G	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1526	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTACCTGGGGGACAAGGTAA	0.572													4	7					0	0	0.00024832	0	0
DSG4	147409	broad.mit.edu	37	18	28968850	28968850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:28968850C>T	uc002kwq.2	+	5	521	c.386C>T	c.(385-387)GCT>GTT	p.A129V	DSG4_uc002kwr.2_Missense_Mutation_p.A129V	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	129	Cadherin 1.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TATTGCCGGGCTCTGAATTCA	0.373													38	46					0	0	0.00148497	0	0
DSG4	147409	broad.mit.edu	37	18	28980906	28980906	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:28980906A>G	uc002kwq.2	+	10	1475	c.1340A>G	c.(1339-1341)CAA>CGA	p.Q447R	DSG4_uc002kwr.2_Missense_Mutation_p.Q447R	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	447	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGTGAGATACAATTTTCTAGA	0.299													36	51					0	0	0.00128727	0	0
DSG2	1829	broad.mit.edu	37	18	29122532	29122532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:29122532G>A	uc002kwu.3	+	14	2239	c.2051G>A	c.(2050-2052)AGA>AAA	p.R684K	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	684	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			CTAGTAGGAAGAAATGGAGTA	0.512													24	26					0	0	0.00278032	0	0
ASXL3	80816	broad.mit.edu	37	18	31324786	31324786	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:31324786G>A	uc010dmg.1	+	12	5029	c.4974G>A	c.(4972-4974)AGG>AGA	p.R1658R	ASXL3_uc002kxq.2_Silent_p.R1365R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1658					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TTCATCCCAGGAATCTTGTAA	0.438													28	44					0	0	0.00283554	0	0
ASXL3	80816	broad.mit.edu	37	18	31325947	31325947	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:31325947C>T	uc010dmg.1	+	12	6190	c.6135C>T	c.(6133-6135)CTC>CTT	p.L2045L	ASXL3_uc002kxq.2_Silent_p.L1752L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2045	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ctccacctcTCCCTAATGCAG	0.254													5	8					0	0	0.000602214	0	0
SETBP1	26040	broad.mit.edu	37	18	42532080	42532080	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:42532080C>A	uc010dni.2	+	4	3071	c.2775C>A	c.(2773-2775)GAC>GAA	p.D925E		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	925						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		TCATTGTGGACAACTTTCTGG	0.542									Schinzel-Giedion_syndrome				20	35					3.62473e-10	1.49488e-09	0.00188189	1	0
SLC14A2	8170	broad.mit.edu	37	18	43246970	43246970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:43246970G>A	uc010dnj.2	+	14	1949	c.1628G>A	c.(1627-1629)CGG>CAG	p.R543Q	SLC14A2_uc002lbe.2_Missense_Mutation_p.R543Q	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	543						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TCCTGGATTCGGAGTTCCATG	0.483													25	32					0	0	0.00047179	0	0
SLC14A1	6563	broad.mit.edu	37	18	43316460	43316460	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:43316460A>T	uc010xcn.1	+	7	829	c.510A>T	c.(508-510)AAA>AAT	p.K170N	SLC14A1_uc010dnk.2_Missense_Mutation_p.K226N|SLC14A1_uc002lbf.3_Missense_Mutation_p.K170N|SLC14A1_uc002lbg.3_Intron|SLC14A1_uc010xco.1_Missense_Mutation_p.K65N|SLC14A1_uc002lbh.3_Missense_Mutation_p.K62N|SLC14A1_uc002lbi.3_Missense_Mutation_p.K38N|SLC14A1_uc002lbj.3_Missense_Mutation_p.K226N|SLC14A1_uc002lbk.3_Missense_Mutation_p.K170N	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	170						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						TGCTCAGCAAATGGGACCTCC	0.458													50	59					0	0	0.000781405	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560939	44560939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:44560939C>T	uc002lcr.1	-	1	1050	c.697G>A	c.(697-699)GAA>AAA	p.E233K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	233					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GGGCGTTTTTCCTGGCGAGAC	0.617													8	10					0	0	0.000157383	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561339	44561339	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:44561339G>A	uc002lcr.1	-	1	650	c.297C>T	c.(295-297)TTC>TTT	p.F99F	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	99					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GAGCCTCCCCGAAGCGCTGTC	0.657													20	33					0	0	0.00121646	0	0
MYO5B	4645	broad.mit.edu	37	18	47488689	47488689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:47488689C>T	uc002leb.2	-	12	1780	c.1492G>A	c.(1492-1494)GAC>AAC	p.D498N	MYO5B_uc002lec.1_Missense_Mutation_p.D497N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	498	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCAATGAGGTCGATACAAGGT	0.403													32	49					0	0	0.00058488	0	0
DCC	1630	broad.mit.edu	37	18	50866115	50866115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:50866115C>T	uc002lfe.1	+	15	2784	c.2197C>T	c.(2197-2199)CAT>TAT	p.H733Y	DCC_uc010xdr.1_Missense_Mutation_p.H581Y|DCC_uc010dpf.1_Missense_Mutation_p.H388Y	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	733	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AAGCTCTCTTCATGTGAGGCC	0.458													21	27					0	0	0.00047179	0	0
C18orf26	284254	broad.mit.edu	37	18	52262289	52262289	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:52262289C>T	uc002lfq.1	+	2	301	c.255C>T	c.(253-255)ATC>ATT	p.I85I	C18orf26_uc002lfp.1_Intron	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	85						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		ACCCAGGAATCCTTGCACATT	0.453													12	30					0	0	0.00185496	0	0
TCF4	6925	broad.mit.edu	37	18	52895576	52895576	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:52895576C>T	uc002lfz.2	-	19	2496	c.1884G>A	c.(1882-1884)CCG>CCA	p.P628P	TCF4_uc002lfw.3_Silent_p.P472P|TCF4_uc010xdu.1_Silent_p.P498P|TCF4_uc010xdv.1_Silent_p.P498P|TCF4_uc002lfx.2_Silent_p.P561P|TCF4_uc010xdw.1_Silent_p.P498P|TCF4_uc002lfy.2_Silent_p.P586P|TCF4_uc010xdx.1_Silent_p.P604P|TCF4_uc010dph.1_Silent_p.P632P|TCF4_uc010xdy.1_Silent_p.P608P|TCF4_uc002lga.2_Silent_p.P734P|TCF4_uc002lgb.1_Silent_p.P468P|TCF4_uc010dpi.2_Silent_p.P638P|TCF4_uc002lfv.2_Silent_p.P411P	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	628	Class A specific domain.				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		ACGCAGCTTTCGGATTCAGAT	0.532													52	73					0	0	0.000781405	0	0
ALPK2	115701	broad.mit.edu	37	18	56203320	56203320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:56203320C>T	uc002lhj.3	-	5	4313	c.4099G>A	c.(4099-4101)GAA>AAA	p.E1367K	ALPK2_uc002lhk.1_Missense_Mutation_p.E698K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1367							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTAACATTTTCCTTCCCTCCA	0.453													38	50					0	0	0.0025221	0	0
SERPINB12	89777	broad.mit.edu	37	18	61234240	61234240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:61234240C>T	uc010xen.1	+	7	1214	c.1214C>T	c.(1213-1215)CCT>CTT	p.P405L	SERPINB12_uc010xeo.1_Missense_Mutation_p.P425L	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	405					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						GTCTGCTCTCCTTAAAAGGGG	0.413													21	41					0	0	0.00188189	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570430	61570430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:61570430G>A	uc010xeu.1	+	9	1472	c.1139G>A	c.(1138-1140)AGA>AAA	p.R380K	SERPINB2_uc002ljo.2_Missense_Mutation_p.R380K|SERPINB2_uc010dqh.2_Missense_Mutation_p.R310K|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	380		Reactive bond.			anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	ATGACAGGGAGAACTGGACAT	0.453													19	29					0	0	0.00121646	0	0
SERPINB10	5273	broad.mit.edu	37	18	61597398	61597398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:61597398G>A	uc010xev.1	+	6	700	c.610G>A	c.(610-612)GAA>AAA	p.E204K	SERPINB10_uc010xew.1_Missense_Mutation_p.E204K	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	204						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				AAACACCACAGAAAAGCCTTT	0.373													20	33					0	0	0.000720815	0	0
CCDC102B	79839	broad.mit.edu	37	18	66678171	66678171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:66678171G>A	uc002lkk.2	+	9	1487	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	CCDC102B_uc002lki.2_Missense_Mutation_p.E422K	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	422	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				CCTTTGAAAGGAATTACTGAA	0.318													10	10					0	0	0.000442599	0	0
SALL3	27164	broad.mit.edu	37	18	76754491	76754491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr18:76754491C>T	uc002lmt.2	+	2	2500	c.2500C>T	c.(2500-2502)CCC>TCC	p.P834S	SALL3_uc010dra.2_Missense_Mutation_p.P441S	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	834					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCCCTCCCCGCCCTCGGTCAT	0.652													15	20					0	0	0.000566183	0	0
PPAP2C	8612	broad.mit.edu	37	19	287697	287697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:287697C>T	uc002loi.2	-	3	358	c.259G>A	c.(259-261)GAC>AAC	p.D87N	PPAP2C_uc002loh.2_Missense_Mutation_p.D108N|PPAP2C_uc002loj.2_Missense_Mutation_p.D31N	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	87					sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGTTGAAGTCCGAGCGAGAA	0.602													68	140					0	0	0.000781405	0	0
C19orf21	126353	broad.mit.edu	37	19	757331	757331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:757331G>A	uc002lpo.2	+	2	468	c.385G>A	c.(385-387)GGG>AGG	p.G129R		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	129										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGATGCTGGGGACGCTGA	0.687													14	10					0	0	0.000308642	0	0
HMHA1	23526	broad.mit.edu	37	19	1068597	1068598	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:1068597_1068598GG>AA	uc002lqz.1	+	2	506_507	c.275_276GG>AA	c.(274-276)CGG>CAA	p.R92Q	HMHA1_uc010xgd.1_Missense_Mutation_p.R108Q|HMHA1_uc010xge.1_Intron|HMHA1_uc002lra.1_5'UTR|HMHA1_uc002lrb.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	92					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGAGCCACCGGAGCCCACTGA	0.743													9	11					0	0	6.4e-05	0	0
ZNF555	148254	broad.mit.edu	37	19	2853499	2853499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:2853499C>T	uc002lwo.2	+	4	1525	c.1436C>T	c.(1435-1437)TCC>TTC	p.S479F	ZNF555_uc002lwn.3_Missense_Mutation_p.S478F	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	479					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAAGACAAATCCTATGAATGC	0.413													25	43					0	0	0.000586117	0	0
NCLN	56926	broad.mit.edu	37	19	3207467	3207467	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:3207467G>A	uc002lxi.2	+	14	1786	c.1632G>A	c.(1630-1632)CAG>CAA	p.Q544Q	NCLN_uc002lxh.1_RNA|NCLN_uc002lxj.1_RNA|NCLN_uc002lxk.2_Silent_p.Q188Q	NM_020170	NP_064555	Q969V3	NCLN_HUMAN	nicalin precursor	544	Cytoplasmic (Potential).				proteolysis|regulation of signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	peptidase activity|protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.83e-113)|Epithelial(107;1.65e-111)|all cancers(105;1.53e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00139)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCTGTCCAGGTGAGCAGTG	0.667													31	41					0	0	0.00283554	0	0
TMIGD2	126259	broad.mit.edu	37	19	4292617	4292617	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:4292617G>A	uc002lzx.1	-	5	874	c.828C>T	c.(826-828)TTC>TTT	p.F276F	TMIGD2_uc010dtv.1_Silent_p.F272F	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	276	Pro-rich.|Cytoplasmic (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACTTTGGGGAACCCTTTTG	0.443													31	76					0	0	0.000692331	0	0
SH3GL1	6455	broad.mit.edu	37	19	4363800	4363800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:4363800C>T	uc002maj.2	-	6	647	c.541G>A	c.(541-543)GAG>AAG	p.E181K	SH3GL1_uc002mak.2_Missense_Mutation_p.E117K|SH3GL1_uc010xig.1_Missense_Mutation_p.E133K	NM_003025	NP_003016	Q99961	SH3G1_HUMAN	SH3-domain GRB2-like 1	181	Potential.|BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	lipid binding|protein binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0152)|STAD - Stomach adenocarcinoma(1328;0.182)		CGTAGCTCCTCATCGGGGATC	0.602			T	MLL	AL								31	41					0	0	0.0024448	0	0
TMEM146	257062	broad.mit.edu	37	19	5739416	5739416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:5739416G>A	uc002mda.2	+	7	600	c.539G>A	c.(538-540)GGA>GAA	p.G180E	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	180	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AATACTGGGGGATTCAGTTTT	0.294													48	75					0	0	0.000781405	0	0
ACSBG2	81616	broad.mit.edu	37	19	6151757	6151757	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:6151757T>C	uc002mef.1	+	4	564	c.337T>C	c.(337-339)TTT>CTT	p.F113L	ACSBG2_uc002mee.1_5'UTR|ACSBG2_uc002meg.1_Missense_Mutation_p.F113L|ACSBG2_uc002meh.1_Missense_Mutation_p.F113L|ACSBG2_uc002mei.1_Missense_Mutation_p.F63L|ACSBG2_uc010xiz.1_Missense_Mutation_p.F113L	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	113					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TATCCTGGGGTTTAACTCTGC	0.478													6	9					0	0	0.000157383	0	0
ALKBH7	84266	broad.mit.edu	37	19	6374579	6374579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:6374579C>T	uc002meo.1	+	3	870	c.482C>T	c.(481-483)CCG>CTG	p.P161L		NM_032306	NP_115682	Q9BT30	ALKB7_HUMAN	spermatogenesis associated 11 precursor	161						extracellular region|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TTGCTGGAGCCGGGCTCCCTC	0.642													7	20					0	0	0.00198382	0	0
VAV1	7409	broad.mit.edu	37	19	6821869	6821869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:6821869G>A	uc002mfu.1	+	4	545	c.448G>A	c.(448-450)GAC>AAC	p.D150N	VAV1_uc010xjh.1_Missense_Mutation_p.D150N|VAV1_uc010dva.1_Missense_Mutation_p.D150N|VAV1_uc002mfv.1_Missense_Mutation_p.D95N	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	150					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CGACCAGATCGAGTGAGTGCT	0.642													28	46					0	0	0.00058488	0	0
VAV1	7409	broad.mit.edu	37	19	6825388	6825388	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:6825388C>T	uc002mfu.1	+	8	895	c.798C>T	c.(796-798)CTC>CTT	p.L266L	VAV1_uc010xjh.1_Silent_p.L234L|VAV1_uc010dva.1_Silent_p.L266L|VAV1_uc002mfv.1_Silent_p.L211L	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	266	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CAGCCAATCTCTACCAGGTCT	0.567													14	19					0	0	0.000566183	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841889	8841889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:8841889C>T	uc010xkg.1	+	1	499	c.499C>T	c.(499-501)CCC>TCC	p.P167S		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P167L(1)		central_nervous_system(1)|skin(1)	2						CCTGCATTTTCCCTACTGTGC	0.552													76	25					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9048603	9048603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9048603G>A	uc002mkp.2	-	5	33232	c.33028C>T	c.(33028-33030)CCT>TCT	p.P11010S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11012	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTTCACCAGGAGAAAGAGTC	0.507													12	28					0	0	0.00185496	0	0
MUC16	94025	broad.mit.edu	37	19	9064305	9064305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9064305G>A	uc002mkp.2	-	3	23345	c.23141C>T	c.(23140-23142)CCC>CTC	p.P7714L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7716	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACAGGAAGGGGAGAGGGGGG	0.537													11	13					0	0	0.000978159	0	0
MUC16	94025	broad.mit.edu	37	19	9069660	9069660	+	Missense_Mutation	SNP	G	A	A	rs74872724	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9069660G>A	uc002mkp.2	-	3	17990	c.17786C>T	c.(17785-17787)TCC>TTC	p.S5929F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5931	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGCACTGGGGAAGAAGGAGA	0.498													15	24					0	0	0.000566183	0	0
MUC16	94025	broad.mit.edu	37	19	9077737	9077737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9077737G>A	uc002mkp.2	-	3	9913	c.9709C>T	c.(9709-9711)CCC>TCC	p.P3237S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3238	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTCCATGGGAACAGTTGTT	0.527													35	70					0	0	0.000814825	0	0
MUC16	94025	broad.mit.edu	37	19	9083313	9083313	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9083313C>T	uc002mkp.2	-	1	8706	c.8502G>A	c.(8500-8502)ACG>ACA	p.T2834T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2834	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGTCTGTTCGTGGTGATTT	0.507													6	8					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9084257	9084257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9084257G>A	uc002mkp.2	-	1	7762	c.7558C>T	c.(7558-7560)CTC>TTC	p.L2520F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2520	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGTCTTGAGAAAGCCCATG	0.507													13	13					0	0	0.00244969	0	0
MUC16	94025	broad.mit.edu	37	19	9087450	9087450	+	Silent	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9087450G>T	uc002mkp.2	-	1	4569	c.4365C>A	c.(4363-4365)CTC>CTA	p.L1455L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1455	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGCCATGGGGAGAGTGATTG	0.488													39	40					3.21399e-22	1.33396e-21	0.000953801	1	0
MUC16	94025	broad.mit.edu	37	19	9090722	9090722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9090722G>A	uc002mkp.2	-	1	1297	c.1093C>T	c.(1093-1095)CTT>TTT	p.L365F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	365	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAAGGTAAGGATAGTCTCT	0.498													9	13					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9090772	9090772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:9090772G>A	uc002mkp.2	-	1	1247	c.1043C>T	c.(1042-1044)TCC>TTC	p.S348F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	348	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCCAGAGAGGAAATTGTGCT	0.502													12	23					0	0	0.00136819	0	0
ATG4D	84971	broad.mit.edu	37	19	10659628	10659628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:10659628C>T	uc002mov.2	+	6	1004	c.884C>T	c.(883-885)GCC>GTC	p.A295V	ATG4D_uc010xlh.1_Missense_Mutation_p.A232V|ATG4D_uc010dxh.2_RNA|ATG4D_uc010dxi.2_RNA|ATG4D_uc010dxj.2_Intron	NM_032885	NP_116274	Q86TL0	ATG4D_HUMAN	APG4 autophagy 4 homolog D	295					autophagy|protein transport	cytoplasm	cysteine-type endopeptidase activity				0			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			GACCCCACAGCCGAGTGGAAG	0.622													15	19					0	0	0.000422831	0	0
CCDC159	126075	broad.mit.edu	37	19	11462648	11462648	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:11462648C>T	uc010xlw.1	+	7	817	c.738C>T	c.(736-738)CTC>CTT	p.L246L	CCDC159_uc010xls.1_Silent_p.L163L|CCDC159_uc010xlt.1_Silent_p.L163L|CCDC159_uc010xlv.1_Silent_p.L162L	NM_001080503	NP_001073972	P0C7I6	CC159_HUMAN	coiled-coil domain-containing-like	278	Potential.									ovary(1)	1						ATCAGAAGCTCCGTGAGTTCC	0.617													7	9					0	0	0.00198382	0	0
ZNF627	199692	broad.mit.edu	37	19	11728022	11728022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:11728022C>T	uc002msk.2	+	4	912	c.704C>T	c.(703-705)TCC>TTC	p.S235F	ZNF627_uc010dyf.2_Missense_Mutation_p.S125F	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	235	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTCAGTTGTTCCAGTTACATT	0.393													8	16					0	0	0.000157383	0	0
ZNF443	10224	broad.mit.edu	37	19	12542283	12542283	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:12542283A>G	uc002mtu.2	-	4	901	c.703T>C	c.(703-705)TCT>CCT	p.S235P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	235	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGAAAAGGCTTTA	0.378													4	150					0	0	0.00024832	0	0
ZNF564	163050	broad.mit.edu	37	19	12637887	12637887	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:12637887G>A	uc002mty.2	-	4	1245	c.1035C>T	c.(1033-1035)ACC>ACT	p.T345T	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	345	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGAACTGAAGGTTTTACCAC	0.408													17	32					0	0	0.00152264	0	0
DNASE2	1777	broad.mit.edu	37	19	12986924	12986924	+	Silent	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:12986924C>G	uc002mvn.1	-	6	1109	c.963G>C	c.(961-963)CGG>CGC	p.R321R	DNASE2_uc010xmr.1_Silent_p.R266R	NM_001375	NP_001366	O00115	DNS2A_HUMAN	deoxyribonuclease II, lysosomal precursor	321					apoptosis	lysosome	deoxyribonuclease II activity|DNA binding|protein binding				0						TGCCCCCACCCCGTTGCTCCT	0.612								Direct_reversal_of_damage					3	66					0	0	6.4e-05	0	0
RAD23A	5886	broad.mit.edu	37	19	13059912	13059912	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:13059912C>T	uc002mvw.1	+	6	727	c.618C>T	c.(616-618)CCC>CCT	p.P206P	RAD23A_uc002mvx.1_Silent_p.P206P|RAD23A_uc002mvz.1_Silent_p.P206P|RAD23A_uc002mwa.1_Silent_p.P206P|RAD23A_uc002mvy.1_Silent_p.P41P|RAD23A_uc010xmw.1_Silent_p.P41P	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	206					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						CTGGGAGCCCCGAGCCGGAAC	0.627								NER					4	7					0	0	0.000602214	0	0
CACNA1A	773	broad.mit.edu	37	19	13423558	13423559	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:13423558_13423559GG>AA	uc010dze.2	-	12	1831_1832	c.1595_1596CC>TT	c.(1594-1596)TCC>TTT	p.S532F	CACNA1A_uc010dzc.2_Missense_Mutation_p.S57F|CACNA1A_uc002mwy.3_Missense_Mutation_p.S531F|CACNA1A_uc010xne.1_Missense_Mutation_p.S57F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	532	Helical; Name=S2 of repeat II; (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TAAACATTTCGGACATAAAGAG	0.46													29	57					0	0	6.4e-05	0	0
CACNA1A	773	broad.mit.edu	37	19	13445274	13445274	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:13445274G>A	uc010dze.2	-	8	1352	c.1116C>T	c.(1114-1116)AAC>AAT	p.N372N	CACNA1A_uc002mwy.3_Silent_p.N372N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	372	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AAGCCCGCCGGTTCTCCACCC	0.463													22	42					0	0	0.00127121	0	0
LOC100130932	100130932	broad.mit.edu	37	19	14600390	14600390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:14600390G>A	uc010xnq.1	+	1	633	c.191G>A	c.(190-192)GGA>GAA	p.G64E	GIPC1_uc002myt.2_Intron|GIPC1_uc002myu.2_Intron|GIPC1_uc002myv.2_Intron|GIPC1_uc002myw.2_Intron|GIPC1_uc002myx.2_Intron|GIPC1_uc002myy.2_Intron	NM_001146693	NP_001140165	F5H5R7	F5H5R7_HUMAN	small nuclear ribonucleoprotein G-like protein	64											0						GAAATACGAGGAAATAGTATC	0.408													34	64					0	0	0.00111076	0	0
TECR	9524	broad.mit.edu	37	19	14676599	14676599	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:14676599G>A	uc002mza.2	+	13	970	c.843G>A	c.(841-843)TGG>TGA	p.W281*	TECR_uc002mzb.2_Nonsense_Mutation_p.W296*|TECR_uc010xns.1_Nonsense_Mutation_p.W126*|TECR_uc002mzc.2_Nonsense_Mutation_p.W126*|TECR_uc002mzd.2_Nonsense_Mutation_p.W311*|TECR_uc002mze.2_Nonsense_Mutation_p.W107*|TECR_uc002mzf.1_3'UTR	NM_138501	NP_612510	Q9NZ01	TECR_HUMAN	glycoprotein, synaptic 2	281					fatty acid elongation|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	trans-2-enoyl-CoA reductase (NADPH) activity|very long-chain-acyl-CoA dehydrogenase activity				0						TGACCATCTGGGCCAAGGGCA	0.682													4	3					0	0	0.00116845	0	0
EMR3	84658	broad.mit.edu	37	19	14772823	14772823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:14772823G>A	uc002mzi.3	-	4	455	c.307C>T	c.(307-309)CAT>TAT	p.H103Y	EMR3_uc010dzp.2_Intron|EMR3_uc010xnv.1_Intron	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	103	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						TTCCCAGAATGCAGTCTATAT	0.393													24	40					0	0	0.00047179	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807031	15807031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:15807031C>T	uc002nbl.2	+	11	1371	c.1310C>T	c.(1309-1311)CCT>CTT	p.P437L		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					TGGCCGGATCCTGAGGTGCTG	0.547													23	31					0	0	0.000720815	0	0
OR10H1	26539	broad.mit.edu	37	19	15918036	15918036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:15918036C>T	uc002nbq.2	-	1	901	c.812G>A	c.(811-813)GGA>GAA	p.G271E		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAAGGTGTCTCCTTCCAGAGA	0.557													16	16					0	0	0.000566183	0	0
CHERP	10523	broad.mit.edu	37	19	16641485	16641485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:16641485G>A	uc002nei.1	-	7	861	c.787C>T	c.(787-789)CTC>TTC	p.L263F	MED26_uc002nee.2_Intron	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	263	CID.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						AGCTGCAGGAGCTGGCGGTGG	0.662													14	37					0	0	0.00244969	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:17091331G>A	uc002nfb.2	-	14	1734	c.1702C>T	c.(1702-1704)CGT>TGT	p.R568C		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	521						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGTGTTAAACGAATCGGTTTC	0.592													24	34					0	0	0.00106085	0	0
USHBP1	83878	broad.mit.edu	37	19	17373400	17373400	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:17373400C>T	uc002nfs.1	-	4	716	c.603G>A	c.(601-603)CTG>CTA	p.L201L	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.L137L|USHBP1_uc010eam.1_Silent_p.L129L	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	201	Potential.						PDZ domain binding			ovary(1)	1						GGATGGCCTCCAGGGAGGCCT	0.657													15	36					0	0	0.000566183	0	0
SSBP4	170463	broad.mit.edu	37	19	18542815	18542816	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:18542815_18542816CC>TT	uc002niy.2	+	9	809_810	c.571_572CC>TT	c.(571-573)CCG>TTG	p.P191L	SSBP4_uc010ebp.2_Nonsense_Mutation_p.R168*|SSBP4_uc002niz.2_Missense_Mutation_p.P169L	NM_032627	NP_116016	Q9BWG4	SSBP4_HUMAN	single stranded DNA binding protein 4 isoform a	191	Pro-rich.					nucleus	single-stranded DNA binding				0						CCCAGGGCATCCGAGCATGGGC	0.668													9	14					0	0	6.4e-05	0	0
SLC25A42	284439	broad.mit.edu	37	19	19218738	19218738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:19218738C>T	uc002nlf.1	+	7	684	c.533C>T	c.(532-534)TCG>TTG	p.S178L		NM_178526	NP_848621	Q86VD7	S2542_HUMAN	solute carrier family 25, member 42	178	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.4e-06)|Epithelial(12;0.000497)			ATCCGCATCTCGAGAGAAGAG	0.577													50	83					0	0	0.000781405	0	0
NCAN	1463	broad.mit.edu	37	19	19329750	19329750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:19329750G>A	uc002nlz.2	+	3	199	c.100G>A	c.(100-102)GAA>AAA	p.E34K		NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	34					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CGATGCCAGCGAAAGGGGGCT	0.607													14	21					0	0	0.000422831	0	0
NCAN	1463	broad.mit.edu	37	19	19345817	19345817	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:19345817C>T	uc002nlz.2	+	10	3261	c.3162C>T	c.(3160-3162)CCC>CCT	p.P1054P	NCAN_uc010ecc.1_Silent_p.P618P	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1054	EGF-like 2; calcium-binding (Potential).				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			TCTGCAGCCCCTGTGAGAATG	0.532													40	70					0	0	0.0025221	0	0
ZNF431	170959	broad.mit.edu	37	19	21365636	21365636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:21365636C>T	uc002npp.2	+	5	677	c.530C>T	c.(529-531)CCA>CTA	p.P177L	ZNF431_uc010ecq.2_Missense_Mutation_p.P86L|ZNF431_uc010ecr.2_Missense_Mutation_p.P178L	NM_133473	NP_597730	Q8TF32	ZN431_HUMAN	zinc finger protein 431	177	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2						AAAATATTTCCATGTGATAAA	0.328													17	32					0	0	0.000566183	0	0
ZNF208	7757	broad.mit.edu	37	19	22155441	22155441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:22155441G>A	uc002nqp.2	-	5	2244	c.2095C>T	c.(2095-2097)CAT>TAT	p.H699Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCATCAGTATGAATTCTCTTA	0.358													11	18					0	0	0.00136819	0	0
ZNF676	163223	broad.mit.edu	37	19	22364100	22364100	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:22364100C>A	uc002nqs.1	-	3	737	c.419G>T	c.(418-420)GGT>GTT	p.G140V		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ACATTTCAAACCTTTCTCTCC	0.323													24	62					3.01185e-09	1.24125e-08	0.000586117	1	0
Unknown	0	broad.mit.edu	37	19	23159540	23159540	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:23159540G>A	uc002nqy.1	-	3		c.610C>T			uc002nqz.1_Missense_Mutation_p.S136F					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		ACTTTTGTAGGAATTCTCTCT	0.348													5	11					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	19	23405281	23405281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:23405281G>A	uc010xri.1	-	4	1884	c.1766C>T	c.(1765-1767)CCC>CTC	p.P589L						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		ACATTTGTAGGGTTTCTCTCC	0.353													8	14					0	0	0.000157383	0	0
DPY19L3	147991	broad.mit.edu	37	19	32973073	32973073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:32973073C>T	uc002ntg.2	+	19	2254	c.2078C>T	c.(2077-2079)CCC>CTC	p.P693L	DPY19L3_uc002nth.1_Missense_Mutation_p.P693L|DPY19L3_uc002nti.1_RNA|DPY19L3_uc002ntj.1_Missense_Mutation_p.P115L	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	693						integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					AACCTGCCTCCCTACGTGGCC	0.463													56	109					0	0	0.000781405	0	0
ANKRD27	84079	broad.mit.edu	37	19	33119636	33119636	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:33119636G>A	uc002ntn.1	-	14	1485	c.1329C>T	c.(1327-1329)CTC>CTT	p.L443L		NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	443					early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					ACCCAGAGACGAGTTTCTCAC	0.313													33	48					0	0	0.00170553	0	0
GPI	2821	broad.mit.edu	37	19	34884842	34884843	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:34884842_34884843CC>TT	uc002nvg.1	+	12	1036_1037	c.933_934CC>TT	c.(931-936)CCCCTG>CCTTTG	p.311_312PL>PL	GPI_uc002nvf.2_Silent_p.350_351PL>PL|GPI_uc010xrv.1_Silent_p.322_323PL>PL|GPI_uc010xrw.1_Silent_p.283_284PL>PL|GPI_uc010edl.1_Silent_p.311_312PL>PL|GPI_uc002nvi.1_5'UTR	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	311_312					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					GCACGACGCCCCTGGAGAAGAA	0.614													39	75					0	0	6.4e-05	0	0
MLL4	9757	broad.mit.edu	37	19	36218862	36218863	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:36218862_36218863CC>TT	uc010eei.2	+	19	4473_4474	c.4473_4474CC>TT	c.(4471-4476)GGCCAG>GGTTAG	p.Q1492*		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1492					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGCTGGAGGCCAGATGAAGGG	0.644													7	2					0	0	6.4e-05	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278120	36278120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:36278120C>T	uc002obs.1	+	21	2255	c.2170C>T	c.(2170-2172)CCT>TCT	p.P724S	ARHGAP33_uc002obt.1_Missense_Mutation_p.P749S|ARHGAP33_uc010eel.2_Missense_Mutation_p.P473S|ARHGAP33_uc002obv.1_Missense_Mutation_p.P473S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	772					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						TCTCCTGCGCCCTGGGGGTGC	0.657													16	30					0	0	0.00074312	0	0
PRODH2	58510	broad.mit.edu	37	19	36303125	36303125	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:36303125G>A	uc002obx.1	-	4	667	c.649C>T	c.(649-651)CTG>TTG	p.L217L		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	217					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCCGTGACAGGTCCACACAC	0.652													16	14					0	0	0.000566183	0	0
RYR1	6261	broad.mit.edu	37	19	38997535	38997535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:38997535G>A	uc002oit.2	+	57	8889	c.8759G>A	c.(8758-8760)CGA>CAA	p.R2920Q	RYR1_uc002oiu.2_Missense_Mutation_p.R2920Q|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2920	6 X approximate repeats.|Cytoplasmic.|6.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCACGAGATCGAGAGAAGGCC	0.622													29	20					0	0	0.000692331	0	0
FCGBP	8857	broad.mit.edu	37	19	40419872	40419873	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:40419872_40419873CC>TT	uc002omp.3	-	6	3129_3130	c.3121_3122GG>AA	c.(3121-3123)GGA>AAA	p.G1041K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1041	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TTCAGTTGCTCCACAGCCGGGC	0.639													17	26					0	0	6.4e-05	0	0
PSMC4	5704	broad.mit.edu	37	19	40480456	40480456	+	Silent	SNP	G	C	C	rs34344223	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:40480456G>C	uc002omq.2	+	5	532	c.495G>C	c.(493-495)GCG>GCC	p.A165A	PSMC4_uc002omr.2_Silent_p.A134A	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	165					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGATGTACGCGGACATCGGAG	0.647													3	69					0	0	0.00024832	0	0
GRIK5	2901	broad.mit.edu	37	19	42525574	42525574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:42525574G>A	uc002osj.1	-	14	1785	c.1750C>T	c.(1750-1752)CAC>TAC	p.H584Y	GRIK5_uc002osi.1_Missense_Mutation_p.H156Y|GRIK5_uc010eib.1_Missense_Mutation_p.H503Y	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	584	Cytoplasmic (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	TCCAGGATGTGGGGGCGTGCC	0.657													9	13					0	0	0.000442599	0	0
PSG6	5675	broad.mit.edu	37	19	43585352	43585352	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:43585352C>T	uc002ovi.2	-	2	204	c.111G>A	c.(109-111)ACG>ACA	p.T37T	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Silent_p.T37T|PSG2_uc002ovq.3_Silent_p.T37T|PSG2_uc010eiq.1_Silent_p.T37T|PSG2_uc002ovs.3_Silent_p.T37T|PSG2_uc002ovt.3_Silent_p.T37T			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	37	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGGCTTCAATCGTGACTTGGG	0.478													38	115					0	0	0.00222228	0	0
PSG4	5672	broad.mit.edu	37	19	43699348	43699348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:43699348C>T	uc002ovy.2	-	4	889	c.787G>A	c.(787-789)GAA>AAA	p.E263K	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.E170K|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	263	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				CTCTTAGGTTCACAGGTGAAG	0.453													62	131					0	0	0.000781405	0	0
ZNF45	7596	broad.mit.edu	37	19	44417609	44417609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:44417609C>T	uc002oxu.1	-	4	2078	c.1979G>A	c.(1978-1980)CGA>CAA	p.R660Q	ZNF45_uc002oxw.1_Missense_Mutation_p.R660Q|ZNF45_uc002oxv.1_Missense_Mutation_p.R660Q	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	660	C2H2-type 18.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						AGCATGGACTCGCTGATGAAT	0.443													25	29					0	0	0.000720815	0	0
ZNF229	7772	broad.mit.edu	37	19	44933997	44933997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:44933997G>A	uc002oze.1	-	6	1393	c.959C>T	c.(958-960)TCT>TTT	p.S320F	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.S314F	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				ACTCTTAACAGATTTCTCTCC	0.493													9	17					0	0	0.000274275	0	0
CEACAM20	125931	broad.mit.edu	37	19	45026929	45026929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:45026929G>A	uc010ejn.1	-	4	501	c.485C>T	c.(484-486)CCT>CTT	p.P162L	CEACAM20_uc010ejo.1_Missense_Mutation_p.P162L|CEACAM20_uc010ejp.1_Missense_Mutation_p.P162L|CEACAM20_uc010ejq.1_Missense_Mutation_p.P162L	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	162	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GATTTCAACAGGATCAGGACC	0.443													96	137					0	0	0.000781405	0	0
PVR	5817	broad.mit.edu	37	19	45150799	45150799	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:45150799C>T	uc002ozm.2	+	2	683	c.384C>T	c.(382-384)TTC>TTT	p.F128F	PVR_uc010ejs.2_Silent_p.F128F|PVR_uc010xxb.1_Silent_p.F128F|PVR_uc010xxc.1_Silent_p.F128F|PVR_uc002ozn.2_Silent_p.F73F	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	128	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		TCGTCACGTTCCCGCAGGGCA	0.607													60	86					0	0	0.000781405	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45885952	45885952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:45885952C>T	uc002pbn.2	-	12	2358	c.2281G>A	c.(2281-2283)GGG>AGG	p.G761R	PPP1R13L_uc002pbm.2_Missense_Mutation_p.G340R|PPP1R13L_uc002pbo.2_Missense_Mutation_p.G761R	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	761	SH3.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		TACACTGCCCCGCTGTTCATC	0.672													8	15					0	0	0.000442599	0	0
STRN4	29888	broad.mit.edu	37	19	47232010	47232010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:47232010C>T	uc002pfl.2	-	7	937	c.904G>A	c.(904-906)GAA>AAA	p.E302K	STRN4_uc002pfm.2_Missense_Mutation_p.E302K|STRN4_uc010xyf.1_RNA|STRN4_uc010xyg.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	302						cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		TCTTCCATTTCGGGCACCAGA	0.567													39	67					0	0	0.000781405	0	0
PTOV1	53635	broad.mit.edu	37	19	50360379	50360379	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:50360379C>G	uc002pqf.1	+	6	876	c.706C>G	c.(706-708)CGC>GGC	p.R236G	PTOV1_uc002ppz.3_RNA|PTOV1_uc002pqb.3_Missense_Mutation_p.R204G|PTOV1_uc002pqa.2_RNA|PTOV1_uc002pqc.1_RNA|PTOV1_uc002pqd.2_RNA|PTOV1_uc002pqe.1_RNA	NM_017432	NP_059128	Q86YD1	PTOV1_HUMAN	prostate tumor overexpressed 1	236	Interaction with FLOT1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|plasma membrane					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		CATCACCACCCGCAAGCAGGT	0.617													4	139					0	0	0.00116845	0	0
LRRC4B	94030	broad.mit.edu	37	19	51022446	51022446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:51022446G>A	uc002pss.2	-	3	661	c.524C>T	c.(523-525)TCC>TTC	p.S175F		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	175	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GAAGGCGTAGGAGGGGATGCT	0.657													24	28					0	0	0.000720815	0	0
SYT3	84258	broad.mit.edu	37	19	51132596	51132596	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:51132596C>T	uc002pst.2	-	4	1870	c.1236G>A	c.(1234-1236)CAG>CAA	p.Q412Q	SYT3_uc002psv.2_Silent_p.Q412Q|SYT3_uc010ycd.1_Silent_p.Q412Q	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	412	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GGTCAGGGGGCTGCTCGGCCA	0.672													4	13					0	0	0.00024832	0	0
SYT3	84258	broad.mit.edu	37	19	51140539	51140539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:51140539G>A	uc002pst.2	-	1	764	c.130C>T	c.(130-132)CCC>TCC	p.P44S	SYT3_uc002psv.2_Missense_Mutation_p.P44S|SYT3_uc010ycd.1_Missense_Mutation_p.P44S	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	44	Vesicular (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GGACCCCGGGGATAGCCTCGG	0.627													31	47					0	0	0.00283554	0	0
KLK4	9622	broad.mit.edu	37	19	51412575	51412575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:51412575C>T	uc002pua.1	-	2	157	c.157G>A	c.(157-159)GAA>AAA	p.E53K	KLK4_uc002pty.1_Missense_Mutation_p.E4K|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_5'UTR|KLK4_uc002puc.1_RNA|KLK4_uc010eoi.1_5'UTR|KLK4_uc002pud.1_5'Flank	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	53	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		CAGAACAATTCGTTTTCCATG	0.617													83	125					0	0	0.000781405	0	0
LIM2	3982	broad.mit.edu	37	19	51883763	51883763	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:51883763G>A	uc002pwm.2	-	4	500	c.456C>T	c.(454-456)TTC>TTT	p.F152F	LIM2_uc002pwl.2_Silent_p.F194F	NM_001161748	NP_001155220	P55344	LMIP_HUMAN	lens intrinsic membrane protein 2, 19kDa isoform	152	Helical; (Potential).				cell-cell junction assembly	cell junction|integral to membrane	structural constituent of eye lens				0		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000214)|OV - Ovarian serous cystadenocarcinoma(262;0.00985)		CAGTACCTGCGAAGAACGTCA	0.617													46	87					0	0	0.000781405	0	0
ZNF808	388558	broad.mit.edu	37	19	53058004	53058004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:53058004C>T	uc010epq.1	+	5	2012	c.1835C>T	c.(1834-1836)TCA>TTA	p.S612L	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	612	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		GCTCTTGAGTCACATAAGAGA	0.408													25	39					0	0	0.00047179	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045054	55045054	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:55045054G>A	uc010yfa.1	+	3		c.280G>A			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		TTGTCATATGGACAATATTCC	0.547													9	26					0	0	0.000274275	0	0
LILRP2	79166	broad.mit.edu	37	19	55221525	55221525	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:55221525C>T	uc002qgs.1	+	1		c.1925C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCCAACTTCACCCTGGGCCCT	0.647													11	12					0	0	0.00136819	0	0
FCAR	2204	broad.mit.edu	37	19	55399441	55399441	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:55399441C>T	uc002qhr.1	+	4	626	c.429C>T	c.(427-429)TCC>TCT	p.S143S	FCAR_uc002qhq.2_Silent_p.S143S|FCAR_uc002qhs.1_Intron|FCAR_uc002qht.1_Silent_p.S116S|FCAR_uc010esi.1_Intron|FCAR_uc002qhu.1_Intron|FCAR_uc002qhv.1_Silent_p.S143S|FCAR_uc002qhw.1_Silent_p.S131S|FCAR_uc002qhx.1_Intron|FCAR_uc002qhy.1_Silent_p.S131S|FCAR_uc002qhz.1_Silent_p.S131S|FCAR_uc002qia.1_Silent_p.S34S	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	143	Ig-like C2-type 2.|Extracellular (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		AGAATATTTCCCTCACGTGCA	0.502													16	33					0	0	0.000566183	0	0
NLRP7	199713	broad.mit.edu	37	19	55447723	55447723	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:55447723G>A	uc002qih.3	-	6	2282	c.2206C>T	c.(2206-2208)CTG>TTG	p.L736L	NLRP7_uc002qig.3_Silent_p.L708L|NLRP7_uc002qii.3_Silent_p.L736L|NLRP7_uc010esk.2_Silent_p.L736L|NLRP7_uc010esl.2_Silent_p.L764L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	736							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GCCAGGGTCAGGTGCGTGAGG	0.527													19	36					0	0	0.00074312	0	0
UBE2S	27338	broad.mit.edu	37	19	55913070	55913071	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:55913070_55913071GG>AT	uc002qkx.1	-	4	770_771	c.402_403CC>AT	c.(400-405)GGCCGC>GGATGC	p.R135C		NM_014501	NP_055316	Q16763	UBE2S_HUMAN	ubiquitin-conjugating enzyme E2S	135					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|exit from mitosis|free ubiquitin chain polymerization|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	anaphase-promoting complex	ATP binding|ubiquitin-protein ligase activity				0	Breast(117;0.155)		LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.11)		AAGAGCAGGCGGCCCGCCTCCT	0.673													14	28					0	0	6.4e-05	0	0
NLRP9	338321	broad.mit.edu	37	19	56244125	56244125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:56244125C>T	uc002qly.2	-	2	1100	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	358	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GAGTTTATTTCAAGGTCTTCT	0.438													36	59					0	0	0.00148497	0	0
NLRP13	126204	broad.mit.edu	37	19	56423734	56423734	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:56423734G>A	uc010ygg.1	-	5	1474	c.1449C>T	c.(1447-1449)CTC>CTT	p.L483L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	483	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCAGACTGCAGAGGGCCCTCC	0.488													25	34					0	0	0.000720815	0	0
NLRP13	126204	broad.mit.edu	37	19	56424493	56424493	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:56424493C>T	uc010ygg.1	-	5	715	c.690G>A	c.(688-690)ACG>ACA	p.T230T		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	230	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCAAGACTATCGTCTGGGCCT	0.522													40	55					0	0	0.00195071	0	0
ZNF583	147949	broad.mit.edu	37	19	56935483	56935483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:56935483C>T	uc010ygl.1	+	5	1621	c.1456C>T	c.(1456-1458)CAT>TAT	p.H486Y	ZNF583_uc002qnc.2_Missense_Mutation_p.H486Y|ZNF583_uc010ygm.1_Missense_Mutation_p.H486Y	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	486	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		TCAGAGAATTCATACTGGAGA	0.383													25	38					0	0	0.000720815	0	0
ZFP28	140612	broad.mit.edu	37	19	57059204	57059204	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:57059204C>T	uc002qnj.2	+	4	527	c.456C>T	c.(454-456)ATC>ATT	p.I152I	ZFP28_uc002qni.2_Silent_p.I152I|uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	152	KRAB 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.I152M(1)		ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		CCGATGTGATCTCCTCGTTGG	0.512													29	54					0	0	0.000692331	0	0
PEG3	5178	broad.mit.edu	37	19	57329130	57329130	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:57329130G>A	uc002qnu.2	-	6	1197	c.846C>T	c.(844-846)TAC>TAT	p.Y282Y	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Intron|PEG3_uc002qnv.2_Silent_p.Y282Y|PEG3_uc002qnw.2_Silent_p.Y158Y|PEG3_uc002qnx.2_Silent_p.Y156Y|PEG3_uc010etr.2_Silent_p.Y282Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	282					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGGTGCTTGGGTAGGCACTTC	0.517													18	25					0	0	0.000958276	0	0
USP29	57663	broad.mit.edu	37	19	57642498	57642498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:57642498C>T	uc002qny.2	+	4	2811	c.2455C>T	c.(2455-2457)CCT>TCT	p.P819S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	819					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GATGGGGGATCCTCTCCAGGC	0.483													12	30					0	0	0.000308642	0	0
SLC27A5	10998	broad.mit.edu	37	19	59010878	59010878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:59010878G>A	uc002qtc.2	-	7	1758	c.1648C>T	c.(1648-1650)CGC>TGC	p.R550C	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	550	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		TCCCCGAGGCGGTCGCGGAAG	0.657													25	29					0	0	0.00106085	0	0
TSSC1	7260	broad.mit.edu	37	2	3196249	3196249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:3196249G>A	uc002qxj.2	-	8	1118	c.925C>T	c.(925-927)CCC>TCC	p.P309S	TSSC1_uc002qxi.2_RNA	NM_003310	NP_003301	Q53HC9	TSSC1_HUMAN	tumor suppressing subtransferable candidate 1	309	WD 4.						protein binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.212)		OV - Ovarian serous cystadenocarcinoma(76;0.00877)|Epithelial(75;0.0283)|all cancers(51;0.0464)		TGGCCGAAGGGCTCCGACGAG	0.572													24	39					0	0	0.000720815	0	0
GREB1	9687	broad.mit.edu	37	2	11750946	11750946	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:11750946G>A	uc002rbk.1	+	18	3099	c.2799G>A	c.(2797-2799)CAG>CAA	p.Q933Q	GREB1_uc002rbo.1_Silent_p.Q567Q|GREB1_uc002rbp.1_5'Flank	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	933						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		AGATCACGCAGAACCTCCTCA	0.662													16	18					0	0	0.000422831	0	0
APOB	338	broad.mit.edu	37	2	21233995	21233995	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:21233995C>T	uc002red.2	-	26	5873	c.5745G>A	c.(5743-5745)GGG>GGA	p.G1915G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1915					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAGCGAGTTTCCCATTGCCAT	0.443													108	192					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21265276	21265277	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:21265276_21265277GG>TT	uc002red.2	-	3	321_322	c.193_194CC>AA	c.(193-195)CCT>AAT	p.P65N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	65	Vitellogenin.|Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGCAGTCCCAGGGACTCCACTG	0.545													10	339					0	0	6.4e-05	0	0
GPR113	165082	broad.mit.edu	37	2	26534031	26534031	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:26534031G>A	uc002rhe.3	-	11	2565	c.2565C>T	c.(2563-2565)ACC>ACT	p.T855T	GPR113_uc010yky.1_Silent_p.T786T|GPR113_uc002rhb.1_Silent_p.T458T|GPR113_uc010eyk.1_Silent_p.T656T|GPR113_uc002rhc.1_Silent_p.T458T|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	855	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCAGAAAAAGGTGGCCAGGT	0.617													4	7					0	0	0.00024832	0	0
CAD	790	broad.mit.edu	37	2	27454446	27454446	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:27454446A>G	uc002rji.2	+	16	2560	c.2398A>G	c.(2398-2400)ATG>GTG	p.M800V	CAD_uc010eyw.2_Missense_Mutation_p.M737V	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	800	CPSase (Carbamoyl-phosphate synthase).|CPSase A.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	AGTCAGCGATATGGTAAGTAG	0.498													21	19					0	0	0.00229938	0	0
C2orf16	84226	broad.mit.edu	37	2	27803256	27803256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:27803256G>A	uc002rkz.3	+	1	3868	c.3817G>A	c.(3817-3819)GAA>AAA	p.E1273K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1273										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CACTCAGAATGAAAAACGGGC	0.398													37	79					0	0	0.00170553	0	0
TRMT61B	55006	broad.mit.edu	37	2	29074031	29074031	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:29074031G>A	uc002rmm.2	-	5	1251	c.1219C>T	c.(1219-1221)CAA>TAA	p.Q407*	TRMT61B_uc002rmn.2_Nonsense_Mutation_p.Q407*|TRMT61B_uc010ezk.2_Intron	NM_017910	NP_060380	Q9BVS5	TR61B_HUMAN	tRNA methyltransferase 61 homolog B	407							tRNA (adenine-N1-)-methyltransferase activity				0						TCTACTTTTTGAGCTAAAATT	0.383													21	45					0	0	0.00152264	0	0
BIRC6	57448	broad.mit.edu	37	2	32689721	32689721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:32689721C>T	uc010ezu.2	+	25	5220	c.5086C>T	c.(5086-5088)CCC>TCC	p.P1696S		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1696					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGTTATTCCACCCACTCCAAA	0.423													16	35					0	0	0.00074312	0	0
TTC27	55622	broad.mit.edu	37	2	33003043	33003043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:33003043C>T	uc002rom.2	+	14	2006	c.1775C>T	c.(1774-1776)CCC>CTC	p.P592L	TTC27_uc010ymx.1_Missense_Mutation_p.P542L|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	592	TPR 4.						protein binding			central_nervous_system(1)	1						ACTCTAGAACCCGATGTAAGT	0.438													13	22					0	0	0.00244969	0	0
SULT6B1	391365	broad.mit.edu	37	2	37415630	37415630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:37415630C>T	uc002rpu.2	-	1	61	c.40G>A	c.(40-42)GAA>AAA	p.E14K	SULT6B1_uc010yni.1_RNA|SULT6B1_uc002rpv.2_RNA|SULT6B1_uc010fae.1_RNA|SULT6B1_uc010faf.1_RNA|SULT6B1_uc002rpw.2_RNA|SULT6B1_uc010fag.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	52						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				TGTCTGGCTTCGAAGGTGTCC	0.448													35	58					0	0	0.00195071	0	0
MTA3	57504	broad.mit.edu	37	2	42936176	42936176	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:42936176C>T	uc002rso.1	+	15	1964	c.1294C>T	c.(1294-1296)CTG>TTG	p.L432L	MTA3_uc002rsp.1_Silent_p.L432L|MTA3_uc002rsq.2_Silent_p.L489L|MTA3_uc002rsr.2_Silent_p.L488L	NM_020744	NP_065795	Q9BTC8	MTA3_HUMAN	metastasis associated 1 family, member 3	489						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TACCCTCCGGCTGCGGCAGGC	0.438													10	12					0	0	0.000673444	0	0
THADA	63892	broad.mit.edu	37	2	43519318	43519318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:43519318G>A	uc002rsw.3	-	33	5214	c.4862C>T	c.(4861-4863)CCC>CTC	p.P1621L	THADA_uc010far.2_Missense_Mutation_p.P816L|THADA_uc002rsx.3_Missense_Mutation_p.P1621L|THADA_uc002rsy.3_RNA	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1621							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				CTCCGTCTGGGGAAGCCACTC	0.478													121	229					0	0	0.000781405	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48873824	48873824	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:48873824G>A	uc010yol.1	+	5	2639	c.2592G>A	c.(2590-2592)AGG>AGA	p.R864R	STON1-GTF2A1L_uc002rwp.1_Silent_p.R911R|GTF2A1L_uc002rws.1_Silent_p.R207R|GTF2A1L_uc010yom.1_Silent_p.R173R|GTF2A1L_uc002rwt.2_Silent_p.R207R	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	864					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGTAGATAGGAAACACTTAG	0.413													25	33					0	0	0.000720815	0	0
FSHR	2492	broad.mit.edu	37	2	49210076	49210076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:49210076G>A	uc002rww.2	-	8	717	c.643C>T	c.(643-645)CAC>TAC	p.H215Y	FSHR_uc002rwx.2_Missense_Mutation_p.H215Y|FSHR_uc010fbn.2_Missense_Mutation_p.H189Y	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	215	LRR 7.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GAGGCTCCGTGGAAAACATCA	0.418									Gonadal_Dysgenesis_46_XX				12	18					0	0	0.00136819	0	0
FSHR	2492	broad.mit.edu	37	2	49295372	49295372	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:49295372C>T	uc002rww.2	-	2	284	c.210G>A	c.(208-210)GGG>GGA	p.G70G	FSHR_uc002rwx.2_Silent_p.G70G|FSHR_uc010fbn.2_Silent_p.G70G|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	70	Extracellular (Potential).|LRR 1.				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TCTCCAGGTCCCCAAATCCTG	0.443									Gonadal_Dysgenesis_46_XX				15	29					0	0	0.000566183	0	0
GPR75	10936	broad.mit.edu	37	2	54080959	54080959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:54080959G>A	uc002rxo.3	-	2	1206	c.935C>T	c.(934-936)TCC>TTC	p.S312F	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	312	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CTTGGCAGTGGAGAGGTTGAT	0.542													18	25					0	0	0.00074312	0	0
PSME4	23198	broad.mit.edu	37	2	54153116	54153116	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:54153116G>A	uc002rxp.2	-	13	1694	c.1638C>T	c.(1636-1638)TTC>TTT	p.F546F	PSME4_uc010yop.1_Silent_p.F432F|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	546					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ACTGTAAGACGAAATCCTCAA	0.363													17	38					0	0	0.00047179	0	0
ACTR2	10097	broad.mit.edu	37	2	65488384	65488384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:65488384C>T	uc002sdq.2	+	7	954	c.739C>T	c.(739-741)CCA>TCA	p.P247S	ACTR2_uc010yqf.1_Missense_Mutation_p.P192S|ACTR2_uc002sdp.2_Missense_Mutation_p.P252S|ACTR2_uc010yqg.1_Missense_Mutation_p.P195S	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	247					cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						TTTCTAGCTCCCAGATGGACG	0.299													15	22					0	0	0.00074312	0	0
DYSF	8291	broad.mit.edu	37	2	71791229	71791229	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:71791229G>A	uc002sie.2	+	24	2773	c.2397G>A	c.(2395-2397)CAG>CAA	p.Q799Q	DYSF_uc010feg.2_Silent_p.Q830Q|DYSF_uc010feh.2_Silent_p.Q785Q|DYSF_uc002sig.3_Silent_p.Q785Q|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.Q799Q|DYSF_uc010fef.2_Silent_p.Q816Q|DYSF_uc010fei.2_Silent_p.Q816Q|DYSF_uc010fek.2_Silent_p.Q817Q|DYSF_uc010fej.2_Silent_p.Q786Q|DYSF_uc010fel.2_Silent_p.Q786Q|DYSF_uc010feo.2_Silent_p.Q831Q|DYSF_uc010fem.2_Silent_p.Q800Q|DYSF_uc010fen.2_Silent_p.Q817Q|DYSF_uc002sif.2_Silent_p.Q800Q	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	799	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGATGCTGCAGGGAGACAAGC	0.632													30	28					0	0	0.0024448	0	0
ST3GAL5	8869	broad.mit.edu	37	2	86075167	86075167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:86075167G>A	uc002sqq.1	-	4	608	c.479C>T	c.(478-480)CCT>CTT	p.P160L	ST3GAL5_uc010fgq.1_Missense_Mutation_p.P32L|ST3GAL5_uc002sqp.1_Missense_Mutation_p.P137L	NM_003896	NP_003887	Q9UNP4	SIAT9_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	160	Lumenal (Potential).				ganglioside biosynthetic process|protein glycosylation	integral to Golgi membrane|integral to plasma membrane	lactosylceramide alpha-2,3-sialyltransferase activity|neolactotetraosylceramide alpha-2,3-sialyltransferase activity				0						CCCAAAAGGAGGATCGTACTT	0.512													67	107					0	0	0.000781405	0	0
POLR1A	25885	broad.mit.edu	37	2	86272788	86272789	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:86272788_86272789CC>TA	uc002sqs.2	-	20	3216_3217	c.2837_2838GG>TA	c.(2836-2838)AGG>ATA	p.R946I	POLR1A_uc010ytb.1_Missense_Mutation_p.R312I|POLR1A_uc002sqt.1_5'Flank	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	946					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						AGCCACCAGCCCTGGGGGTGAA	0.525													48	51					0	0	6.4e-05	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88895175	88895175	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:88895175C>A	uc002stc.3	-	3	647	c.445G>T	c.(445-447)GGG>TGG	p.G149W		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	149	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						ATCTTATTCCCAAATACCTAA	0.363													10	244					0.00136819	0.00557964	0.00136819	1	0
Unknown	0	broad.mit.edu	37	2	89513355	89513355	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:89513355G>A	uc010ytr.1	-	22		c.2657C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGGAGTCCCAGGAGCTGAGCA	0.507													18	29					0	0	0.00152264	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95464643	95464643	+	RNA	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:95464643C>T	uc010fhp.2	-	17		c.2747G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TCAAGTTTTTCATTCCTGTTG	0.299													12	15					0	0	0.00136819	0	0
ZNF2	7549	broad.mit.edu	37	2	95847396	95847396	+	Silent	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:95847396C>A	uc002suf.2	+	6	1282	c.820C>A	c.(820-822)CGA>AGA	p.R274R	ZNF2_uc002sug.2_Silent_p.R232R|ZNF2_uc010yue.1_Silent_p.R237R|ZNF2_uc010fhs.2_Silent_p.R195R	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	274	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		ATCCCTTACTCGACACCAGAG	0.458													5	76					0.00116845	0.00476837	0.00116845	1	0
CNGA3	1261	broad.mit.edu	37	2	98996720	98996720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:98996720G>A	uc002syt.2	+	4	715	c.298G>A	c.(298-300)GAT>AAT	p.D100N	CNGA3_uc002syu.2_Missense_Mutation_p.D100N|CNGA3_uc010fij.2_Missense_Mutation_p.D104N	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	100					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTCTTTTCCTGATCGTTTCCG	0.597													30	39					0	0	0.00283554	0	0
REV1	51455	broad.mit.edu	37	2	100038043	100038043	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:100038043G>A	uc002tad.2	-	11	1961	c.1749C>T	c.(1747-1749)ACC>ACT	p.T583T	REV1_uc002tac.2_Silent_p.T582T	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	583	UmuC.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						GAGTAAGTTTGGTCTCTGCAA	0.418								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					46	70					0	0	0.00285205	0	0
LONRF2	164832	broad.mit.edu	37	2	100910764	100910764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:100910764G>A	uc002tal.3	-	9	2324	c.1684C>T	c.(1684-1686)CGG>TGG	p.R562W	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	562	Lon.		R -> W (in a colorectal cancer sample; somatic mutation).		proteolysis		ATP-dependent peptidase activity|zinc ion binding	p.R562W(1)		large_intestine(1)|skin(1)	2						ATCATAAGCCGATAGCGGGGC	0.527													27	51					0	0	0.00106085	0	0
IL1R2	7850	broad.mit.edu	37	2	102644761	102644761	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:102644761G>A	uc002tbm.2	+	9	1333	c.1104G>A	c.(1102-1104)TGG>TGA	p.W368*	IL1R2_uc002tbn.2_Nonsense_Mutation_p.W368*	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	368	Helical; (Potential).				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	GGGGAATATGGATGCACAGAC	0.498													30	34					0	0	0.0024448	0	0
IL18R1	8809	broad.mit.edu	37	2	103013002	103013002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:103013002G>A	uc002tbw.3	+	11	1432	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	IL18R1_uc010ywc.1_Missense_Mutation_p.E427K|IL18R1_uc010ywd.1_Missense_Mutation_p.E272K|IL18R1_uc010fiy.2_Missense_Mutation_p.E428K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	428	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						TGTTGTTGATGAAATCCACTC	0.343													20	30					0	0	0.00188189	0	0
TMEM182	130827	broad.mit.edu	37	2	103431269	103431269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:103431269G>A	uc010fjb.2	+	5	719	c.532G>A	c.(532-534)GAA>AAA	p.E178K	TMEM182_uc002tcc.3_Missense_Mutation_p.E135K|TMEM182_uc002tcd.3_Missense_Mutation_p.E82K|TMEM182_uc010ywe.1_RNA	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	178	Extracellular (Potential).					integral to membrane					0						GGCTGACATGGAAAGCTACCG	0.463													7	10					0	0	0.00198382	0	0
ANAPC1	64682	broad.mit.edu	37	2	112620119	112620119	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:112620119T>C	uc002thi.2	-	10	1356	c.1109A>G	c.(1108-1110)AAC>AGC	p.N370S		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	370					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GCTTGAAATGTTGAACCTTTG	0.423													3	20					0	0	0.00198382	0	0
MERTK	10461	broad.mit.edu	37	2	112722775	112722775	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:112722775G>A	uc002thk.1	+	5	887	c.765G>A	c.(763-765)ACG>ACA	p.T255T	MERTK_uc002thl.1_Silent_p.T79T	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	255	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						CAGGCCTGACGGAGATGGCGG	0.483													26	50					0	0	0.0024448	0	0
POLR1B	84172	broad.mit.edu	37	2	113304673	113304673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:113304673C>T	uc002thw.2	+	2	842	c.262C>T	c.(262-264)CCA>TCA	p.P88S	POLR1B_uc010fkn.2_Intron|POLR1B_uc002thx.2_5'UTR|POLR1B_uc010fko.2_Missense_Mutation_p.P88S|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Missense_Mutation_p.P126S|POLR1B_uc002thy.2_5'UTR|POLR1B_uc010yxo.1_Intron	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	88					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						ACCTACAGTTCCAAAAGGGAC	0.453													27	35					0	0	0.001512	0	0
IL1F9	56300	broad.mit.edu	37	2	113736264	113736264	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:113736264C>T	uc002tio.1	+	2	118	c.49C>T	c.(49-51)CAA>TAA	p.Q17*	IL1F9_uc010fkr.1_Nonsense_Mutation_p.Q17*	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	17					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GGCCGTCTATCAATCAAGTGA	0.537													31	42					0	0	0.00283554	0	0
PCDP1	200373	broad.mit.edu	37	2	120369239	120369239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:120369239G>A	uc002tmb.2	+	14	1466	c.374G>A	c.(373-375)GGA>GAA	p.G125E	PCDP1_uc010yyq.1_Missense_Mutation_p.G255E	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	411						cilium	calmodulin binding				0	Colorectal(110;0.196)					CTAGACAGAGGAGATCCTATT	0.328													22	38					0	0	0.000586117	0	0
GYPC	2995	broad.mit.edu	37	2	127453565	127453565	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:127453565C>T	uc002tnq.2	+	4	390	c.234C>T	c.(232-234)TTC>TTT	p.F78F	GYPC_uc002tnr.2_Silent_p.F59F|GYPC_uc010flv.2_RNA	NM_002101	NP_002092	P04921	GLPC_HUMAN	glycophorin C isoform 1	78	Helical; Signal-anchor for type III membrane protein.					cortical cytoskeleton|integral to plasma membrane	protein binding			central_nervous_system(1)	1	Colorectal(110;0.0533)			BRCA - Breast invasive adenocarcinoma(221;0.075)		CCCTCCTCTTCGTCATGCTGC	0.612													37	65					0	0	0.000781405	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540798	133540798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:133540798G>A	uc002ttp.2	-	14	3960	c.3586C>T	c.(3586-3588)CCA>TCA	p.P1196S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1196							protein binding				0						ATGCTTGCTGGATTCTTGGAG	0.493													21	26					0	0	0.00152264	0	0
DARS	1615	broad.mit.edu	37	2	136664915	136664915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:136664915G>A	uc002tux.1	-	16	1661	c.1477C>T	c.(1477-1479)CCT>TCT	p.P493S	DARS_uc010fnj.1_Missense_Mutation_p.P393S	NM_001349	NP_001340	P14868	SYDC_HUMAN	aspartyl-tRNA synthetase	493					aspartyl-tRNA aminoacylation|protein complex assembly	cytosol|nuclear membrane|plasma membrane|soluble fraction	aminoacylase activity|aspartate-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.168)	L-Aspartic Acid(DB00128)	GGATCACGAGGGAACATGGAG	0.279													12	27					0	0	0.000978159	0	0
THSD7B	80731	broad.mit.edu	37	2	137872713	137872713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:137872713G>A	uc002tva.1	+	4	1126	c.1126G>A	c.(1126-1128)GAA>AAA	p.E376K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.E266K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GAGAACTTCTGAATGGAAAGA	0.468													13	23					0	0	0.000308642	0	0
THSD7B	80731	broad.mit.edu	37	2	138373853	138373853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:138373853G>A	uc002tva.1	+	17	3445	c.3445G>A	c.(3445-3447)GAA>AAA	p.E1149K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTCCTGAATGAAAATTGCTT	0.453													40	62					0	0	0.00222228	0	0
MMADHC	27249	broad.mit.edu	37	2	150426675	150426676	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:150426675_150426676CC>TT	uc002txb.2	-	7	1208_1209	c.703_704GG>AA	c.(703-705)GGA>AAA	p.G235K	MMADHC_uc002txc.2_Missense_Mutation_p.G235K|MMADHC_uc010fnu.2_Missense_Mutation_p.G269K	NM_015702	NP_056517	Q9H3L0	MMAD_HUMAN	methylmalonic aciduria (cobalamin deficiency)	235						mitochondrion				central_nervous_system(1)|skin(1)	2						TGTATATGGTCCAAAAAACTGA	0.317													6	13					0	0	6.4e-05	0	0
BAZ2B	29994	broad.mit.edu	37	2	160269054	160269054	+	Silent	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:160269054T>C	uc002uao.2	-	14	2821	c.2469A>G	c.(2467-2469)GGA>GGG	p.G823G	BAZ2B_uc002uap.2_Silent_p.G787G|BAZ2B_uc002uaq.1_Silent_p.G653G|BAZ2B_uc002uar.1_Silent_p.G396G	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	823				G -> E (in Ref. 1; BAA89212).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						ACCACTGCATTCCCTTTTAAT	0.328													10	17					0	0	0.000673444	0	0
RBMS1	5937	broad.mit.edu	37	2	161141366	161141366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:161141366G>A	uc002ubo.2	-	9	1264	c.820C>T	c.(820-822)CCA>TCA	p.P274S	RBMS1_uc002ubj.2_Missense_Mutation_p.P238S|RBMS1_uc002ubk.2_Missense_Mutation_p.P238S|RBMS1_uc002ubl.2_Missense_Mutation_p.P269S|RBMS1_uc002ubn.2_Missense_Mutation_p.P271S|RBMS1_uc002ubi.3_Missense_Mutation_p.P271S|RBMS1_uc002ubm.2_Missense_Mutation_p.P241S|RBMS1_uc002ubp.2_Missense_Mutation_p.P274S|RBMS1_uc010fox.2_Missense_Mutation_p.P274S	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	274					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						ATACTGTATGGTGAAGGATAA	0.343													14	31					0	0	0.00244969	0	0
IFIH1	64135	broad.mit.edu	37	2	163128858	163128858	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:163128858G>A	uc002uce.2	-	13	2716	c.2494C>T	c.(2494-2496)CTG>TTG	p.L832L		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	832	Helicase C-terminal.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TGAGCAACCAGGACGTAGGTG	0.413													9	14					0	0	0.000442599	0	0
IFIH1	64135	broad.mit.edu	37	2	163130398	163130398	+	Silent	SNP	G	A	A	rs35677292		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:163130398G>A	uc002uce.2	-	12	2583	c.2361C>T	c.(2359-2361)ATC>ATT	p.I787I		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	787	Helicase C-terminal.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						CTGTGGTAGCGATAAGCAGAT	0.338													9	9					0	0	0.000442599	0	0
KCNH7	90134	broad.mit.edu	37	2	163236418	163236418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:163236418G>A	uc002uch.1	-	14	3288	c.3076C>T	c.(3076-3078)CTC>TTC	p.L1026F		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1026	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CCGTAGGTGAGGTCGCTTTCG	0.512													30	50					0	0	0.0024448	0	0
SCN1A	6323	broad.mit.edu	37	2	166901660	166901660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:166901660C>T	uc010zcz.1	-	10	1573	c.1555G>A	c.(1555-1557)GAA>AAA	p.E519K	SCN1A_uc002udo.3_Missense_Mutation_p.E388K|SCN1A_uc010fpk.2_Missense_Mutation_p.E388K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	519						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTTTGGAATTCATCCTCATCT	0.438													49	78					0	0	0.000781405	0	0
SCN1A	6323	broad.mit.edu	37	2	166905446	166905446	+	Silent	SNP	G	A	A	rs148669964		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:166905446G>A	uc010zcz.1	-	7	996	c.978C>T	c.(976-978)TTC>TTT	p.F326F	SCN1A_uc002udo.3_Silent_p.F195F|SCN1A_uc010fpk.2_Silent_p.F195F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	326	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.F326F(1)		ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AACCCTCCAGGAAATAATGAT	0.279													7	14					0	0	0.000442599	0	0
SCN9A	6335	broad.mit.edu	37	2	167060676	167060676	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:167060676G>A	uc010fpl.2	-	26	4871	c.4530C>T	c.(4528-4530)ATC>ATT	p.I1510I	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1521	IV.|Helical; Name=S1 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TAAGAACCATGATACTAATAT	0.323													27	44					0	0	0.000720815	0	0
XIRP2	129446	broad.mit.edu	37	2	168101155	168101155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:168101155G>A	uc002udx.2	+	8	3271	c.3253G>A	c.(3253-3255)GAT>AAT	p.D1085N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D910N|XIRP2_uc010fpq.2_Missense_Mutation_p.D863N|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	910					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACAAACTAGAGATATTGTTAA	0.353													13	16					0	0	0.00244969	0	0
XIRP2	129446	broad.mit.edu	37	2	168104861	168104861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:168104861C>T	uc002udx.2	+	8	6977	c.6959C>T	c.(6958-6960)CCT>CTT	p.P2320L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2145L|XIRP2_uc010fpq.2_Missense_Mutation_p.P2098L|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2145	Pro-rich.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATGATGTTTCCTGAAAAAAAT	0.473													23	22					0	0	0.00229938	0	0
XIRP2	129446	broad.mit.edu	37	2	168104863	168104863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:168104863G>A	uc002udx.2	+	8	6979	c.6961G>A	c.(6961-6963)GAA>AAA	p.E2321K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E2146K|XIRP2_uc010fpq.2_Missense_Mutation_p.E2099K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2146	Pro-rich.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATGTTTCCTGAAAAAAATGG	0.468													14	32					0	0	0.00074312	0	0
STK39	27347	broad.mit.edu	37	2	168931712	168931712	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:168931712G>A	uc002uea.2	-	11	1279	c.1119C>T	c.(1117-1119)CAC>CAT	p.H373H		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	373					response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						TTTTATGAAGGTGACCACTTG	0.463													56	55					0	0	0.000781405	0	0
MYO3B	140469	broad.mit.edu	37	2	171056660	171056660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:171056660G>A	uc002ufy.2	+	3	330	c.187G>A	c.(187-189)GAT>AAT	p.D63N	MYO3B_uc002ufv.2_Missense_Mutation_p.D50N|MYO3B_uc010fqb.1_Missense_Mutation_p.D50N|MYO3B_uc002ufz.2_Missense_Mutation_p.D63N|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.D50N	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	63	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity	p.D63Y(1)		lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CCCTGTTTAGGATATGGATGA	0.348													13	19					0	0	0.00185496	0	0
PRKRA	8575	broad.mit.edu	37	2	179296897	179296897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:179296897G>A	uc002umf.2	-	8	1070	c.869C>T	c.(868-870)TCC>TTC	p.S290F	PRKRA_uc002umc.2_Missense_Mutation_p.S122F|PRKRA_uc002umd.2_Missense_Mutation_p.S265F|PRKRA_uc002ume.2_Missense_Mutation_p.S279F|PRKRA_uc002umg.2_Missense_Mutation_p.S177F|uc002umb.1_Intron|PRKRA_uc002umh.1_RNA	NM_003690	NP_003681	O75569	PRKRA_HUMAN	protein kinase, interferon-inducible double	290	DRBM 3.|Sufficient for self-association and interaction with TARBP2.				immune response|negative regulation of cell proliferation|production of siRNA involved in RNA interference|response to virus	perinuclear region of cytoplasm	double-stranded RNA binding|enzyme activator activity|protein homodimerization activity			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.00634)|all cancers(119;0.0265)			ATTGCCACAGGAGATACCGGA	0.418													31	61					0	0	0.00058488	0	0
TTN	7273	broad.mit.edu	37	2	179495544	179495544	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:179495544A>T	uc010zfg.1	-	187	36661	c.36437T>A	c.(36436-36438)CTA>CAA	p.L12146Q	TTN_uc010zfh.1_Missense_Mutation_p.L5841Q|TTN_uc010zfi.1_Missense_Mutation_p.L5774Q|TTN_uc010zfj.1_Missense_Mutation_p.L5649Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13073							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTTGGAGTAGGGCCTCTCC	0.468													14	19					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179643790	179643790	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:179643790T>C	uc010zfg.1	-	24	4243	c.4019A>G	c.(4018-4020)GAC>GGC	p.D1340G	TTN_uc010zfh.1_Missense_Mutation_p.D1294G|TTN_uc010zfi.1_Missense_Mutation_p.D1294G|TTN_uc010zfj.1_Missense_Mutation_p.D1294G|TTN_uc002unb.2_Missense_Mutation_p.D1340G|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1340							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTAGAAAGTCCATTTGGTA	0.378													10	13					0	0	0.000673444	0	0
ZNF385B	151126	broad.mit.edu	37	2	180348096	180348096	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:180348096C>T	uc002unn.3	-	6	1177	c.573G>A	c.(571-573)ACG>ACA	p.T191T	ZNF385B_uc002unj.2_Silent_p.T89T|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Silent_p.T88T|ZNF385B_uc002unm.2_Silent_p.T115T	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	191						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GTTTATTTTTCGTTGCGTCTA	0.468													15	34					0	0	0.000422831	0	0
COL3A1	1281	broad.mit.edu	37	2	189871160	189871160	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:189871160T>G	uc002uqj.1	+	43	3300	c.3183T>G	c.(3181-3183)AGT>AGG	p.S1061R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1061	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CTGGAAAGAGTGGTGACAGAG	0.498													12	36					0	0	0.00136819	0	0
ANKAR	150709	broad.mit.edu	37	2	190584441	190584441	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:190584441A>C	uc002uqw.1	+	10	2155	c.2155A>C	c.(2155-2157)AAC>CAC	p.N719H	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	790	ARM 2.					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			ATCTCTAATCAACCTACTGGT	0.408													24	37					0	0	0.000878237	0	0
DNAH7	56171	broad.mit.edu	37	2	196659171	196659171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:196659171C>T	uc002utj.3	-	57	10708	c.10607G>A	c.(10606-10608)GGA>GAA	p.G3536E	DNAH7_uc002uti.3_Missense_Mutation_p.G19E	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3536	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATTTTCACTCCATTCTGCAG	0.458													28	45					0	0	0.00127121	0	0
DNAH7	56171	broad.mit.edu	37	2	196825267	196825267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:196825267C>T	uc002utj.3	-	18	2709	c.2608G>A	c.(2608-2610)GAC>AAC	p.D870N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	870	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACTGTGGAGTCATCTGATGGC	0.443													22	44					0	0	0.00229938	0	0
DNAH7	56171	broad.mit.edu	37	2	196852704	196852704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:196852704C>T	uc002utj.3	-	13	1704	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	535	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TACTGTATTTCCTCTATTAGT	0.328													13	27					0	0	0.000308642	0	0
CCDC150	284992	broad.mit.edu	37	2	197590773	197590773	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:197590773C>T	uc002utp.1	+	22	2641	c.2506C>T	c.(2506-2508)CAA>TAA	p.Q836*	CCDC150_uc010zgs.1_Nonsense_Mutation_p.Q483*|CCDC150_uc010zgt.1_Nonsense_Mutation_p.Q253*|CCDC150_uc002utq.1_Nonsense_Mutation_p.Q151*|CCDC150_uc002utr.1_Nonsense_Mutation_p.Q151*	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	836	Potential.										0						AAAGCAGTTTCAAACCGAGAG	0.428													9	13					0	0	0.000274275	0	0
PLCL1	5334	broad.mit.edu	37	2	198950623	198950623	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:198950623C>T	uc010fsp.2	+	2	2673	c.2382C>T	c.(2380-2382)ATC>ATT	p.I794I	PLCL1_uc002uuv.3_Silent_p.I715I	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	794	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TGGCCATGATCCGTTTTGTTG	0.403													25	47					0	0	0.00178596	0	0
CLK1	1195	broad.mit.edu	37	2	201718717	201718717	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:201718717C>T	uc002uwe.2	-	12	1402	c.1221_splice	c.e12-1	p.R407_splice	CLK1_uc002uwd.2_Splice_Site_p.R230_splice|CLK1_uc010zhi.1_Splice_Site_p.R449_splice|CLK1_uc002uwf.2_Splice_Site_p.R181_splice|CLK1_uc002uwg.2_Splice_Site_p.R256_splice|CLK1_uc010fsv.2_Splice_Site	NM_004071	NP_004062	P49759	CLK1_HUMAN	CDC-like kinase 1 isoform 1						cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2						TTTACGTTTCCTAAAAATAAG	0.368													29	45					0	0	0.001512	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217279598	217279598	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:217279598C>T	uc002vgc.3	+	3	501	c.171C>T	c.(169-171)TTC>TTT	p.F57F	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Silent_p.F57F|SMARCAL1_uc010fvg.2_Silent_p.F57F	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	57					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CCCAAAATTTCCCAAGGGAGT	0.498									Schimke_Immuno-Osseous_Dysplasia				57	84					0	0	0.000781405	0	0
VIL1	7429	broad.mit.edu	37	2	219292982	219292982	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:219292982G>A	uc002via.2	+	6	554	c.489G>A	c.(487-489)GGG>GGA	p.G163G	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Silent_p.G163G|VIL1_uc002vic.1_Silent_p.G163G	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	163	Gelsolin-like 2.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCAACCGAGGGGATGTTTTCC	0.547													29	41					0	0	0.00209593	0	0
PTPRN	5798	broad.mit.edu	37	2	220168482	220168482	+	Missense_Mutation	SNP	G	A	A	rs147728110		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:220168482G>A	uc002vkz.2	-	4	441	c.352C>T	c.(352-354)CCC>TCC	p.P118S	PTPRN_uc010zlc.1_Missense_Mutation_p.P28S|PTPRN_uc002vla.2_Missense_Mutation_p.P118S	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	118	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GGCTCTGGGGGGCGAAGCCTG	0.542													21	34					0	0	0.000586117	0	0
SPEG	10290	broad.mit.edu	37	2	220350109	220350109	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:220350109C>G	uc010fwg.2	+	31	7651	c.7651C>G	c.(7651-7653)CGG>GGG	p.R2551G		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2551					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGGCTTCTCTCGGCCGCGGAA	0.592													3	72					0	0	6.4e-05	0	0
STK11IP	114790	broad.mit.edu	37	2	220476525	220476525	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:220476525C>T	uc002vml.2	+	18	2380	c.2337C>T	c.(2335-2337)ACC>ACT	p.T779T		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	779					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CACCGAGCACCCGTGACCATG	0.597													5	10					0	0	0.000602214	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446850	226446850	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:226446850G>A	uc002voe.2	+	4	892	c.717G>A	c.(715-717)GAG>GAA	p.E239E	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.E9E	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	239										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GAGACCCCGAGGAAGAGGAGC	0.592													45	77					0	0	0.000781405	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447249	226447249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:226447249G>A	uc002voe.2	+	4	1291	c.1116G>A	c.(1114-1116)ATG>ATA	p.M372I	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.M142I	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	372	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGTCTTACATGAAACAGCCAG	0.667													5	12					0	0	0.00116845	0	0
COL4A4	1286	broad.mit.edu	37	2	228004923	228004923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:228004923C>T	uc010zlt.1	-	4	800	c.146G>A	c.(145-147)GGA>GAA	p.G49E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	49	7S domain.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCAATCTCTTCCTCCACAAGG	0.413													25	42					0	0	0.00209593	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882998	228882998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:228882998C>T	uc002vpq.2	-	7	2619	c.2572G>A	c.(2572-2574)GAA>AAA	p.E858K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E858K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E858K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	858						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTTTGTCCTTCGGAAGAGGCT	0.488													33	54					0	0	0.0024448	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910801	230910801	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:230910801C>T	uc002vqd.1	-	4	1404	c.1041G>A	c.(1039-1041)TCG>TCA	p.S347S	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.S347S|SLC16A14_uc002vqf.2_Silent_p.S347S	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	347	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CGTTTTGCTCCGATAAGTTAT	0.423													8	21					0	0	0.000274275	0	0
B3GNT7	93010	broad.mit.edu	37	2	232263129	232263129	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:232263129C>T	uc002vrs.2	+	2	879	c.699C>T	c.(697-699)GTC>GTT	p.V233V		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	233	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		GCCCCCACGTCCCCTTCATTT	0.562													42	78					0	0	0.000781405	0	0
CHRND	1144	broad.mit.edu	37	2	233399004	233399004	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:233399004G>A	uc002vsw.2	+	11	1327	c.1323G>A	c.(1321-1323)GGG>GGA	p.G441G	CHRND_uc010zmg.1_Silent_p.G426G|CHRND_uc010fyc.2_Silent_p.G314G|CHRND_uc010zmh.1_Silent_p.G247G	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	441	Cytoplasmic (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		CTGTGGATGGGGCAAACTTCA	0.537													40	56					0	0	0.000680045	0	0
NEU2	4759	broad.mit.edu	37	2	233899231	233899231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:233899231G>A	uc010zmn.1	+	2	607	c.607G>A	c.(607-609)GGG>AGG	p.G203R		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	203	BNR 2.						exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CCATGACCATGGGCGCACGTG	0.667													20	29					0	0	0.00188189	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652230	234652230	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:234652230G>A	uc002vuz.2	-	1	432	c.333C>T	c.(331-333)TCC>TCT	p.S111S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	111					protein folding		heat shock protein binding|unfolded protein binding				0						AGAGGTCAAAGGAGAATGGGT	0.602													27	45					0	0	0.001512	0	0
IQCA1	79781	broad.mit.edu	37	2	237285791	237285791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:237285791C>T	uc002vvz.1	-	13	1698	c.1516G>A	c.(1516-1518)GGA>AGA	p.G506R	IQCA1_uc002vwb.2_Missense_Mutation_p.G514R|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.G465R	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	506							ATP binding			ovary(1)	1						ATCAGTAATCCTTCTTCCACC	0.453													27	51					0	0	0.001512	0	0
COPS8	10920	broad.mit.edu	37	2	237994633	237994633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:237994633G>A	uc002vwh.2	+	1	550	c.26G>A	c.(25-27)AGC>AAC	p.S9N	uc002vwf.1_5'Flank|COPS8_uc010fys.1_RNA|COPS8_uc002vwg.2_5'UTR|COPS8_uc002vwi.2_Missense_Mutation_p.S9N	NM_006710	NP_006701	Q99627	CSN8_HUMAN	COP9 signalosome subunit 8 isoform 1	9					cullin deneddylation	cytoplasm|signalosome				ovary(1)	1		Breast(86;0.000162)|Renal(207;0.00339)|all_hematologic(139;0.0123)|Ovarian(221;0.0694)|Acute lymphoblastic leukemia(138;0.0775)|all_lung(227;0.169)|all_neural(83;0.211)		Epithelial(121;7.41e-23)|OV - Ovarian serous cystadenocarcinoma(60;5.42e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000175)|Lung(119;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0258)		ATGGCGGAAAGCGCCTTTAGT	0.627													8	9					0	0	0.000274275	0	0
COL6A3	1293	broad.mit.edu	37	2	238275390	238275390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:238275390C>T	uc002vwl.2	-	11	5725	c.5440G>A	c.(5440-5442)GAA>AAA	p.E1814K	COL6A3_uc002vwo.2_Missense_Mutation_p.E1608K|COL6A3_uc010znj.1_Missense_Mutation_p.E1207K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1814	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGCAAAGTTTCCAAAACTTGC	0.507													33	44					0	0	0.0024448	0	0
COL6A3	1293	broad.mit.edu	37	2	238277770	238277770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:238277770C>T	uc002vwl.2	-	10	4621	c.4336G>A	c.(4336-4338)GGA>AGA	p.G1446R	COL6A3_uc002vwo.2_Missense_Mutation_p.G1240R|COL6A3_uc010znj.1_Missense_Mutation_p.G839R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1446	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGCCTAACTCCCTCAGAGCTG	0.468													21	29					0	0	0.00188189	0	0
COL6A3	1293	broad.mit.edu	37	2	238296653	238296653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:238296653G>A	uc002vwl.2	-	4	1169	c.884C>T	c.(883-885)TCC>TTC	p.S295F	COL6A3_uc002vwo.2_Missense_Mutation_p.S89F|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.S89F|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.S295F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	295	VWFA 2.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGTGTCCAAGGAGAACATGGT	0.547													18	24					0	0	0.00121646	0	0
KIF1A	547	broad.mit.edu	37	2	241728729	241728729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:241728729G>A	uc002vzy.2	-	3	253	c.107C>T	c.(106-108)ACC>ATC	p.T36I	KIF1A_uc010fzk.2_Missense_Mutation_p.T36I|KIF1A_uc002vzz.1_Missense_Mutation_p.T36I	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	36	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GTTAACAATGGCTGTGGGAGG	0.597													19	16					0	0	0.000958276	0	0
ANGPT4	51378	broad.mit.edu	37	20	896675	896675	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:896675G>A	uc002wei.2	-	1	286	c.183C>T	c.(181-183)GTC>GTT	p.V61V	ANGPT4_uc010zpn.1_Silent_p.V55V	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	61					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						AGTCCCTGGAGACCTCAGGCC	0.622													28	59					0	0	0.00209593	0	0
HSPA12B	116835	broad.mit.edu	37	20	3726646	3726646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:3726646G>A	uc002wjd.2	+	7	746	c.643G>A	c.(643-645)GCC>ACC	p.A215T	HSPA12B_uc010zqi.1_Missense_Mutation_p.A214T|HSPA12B_uc002wje.2_Missense_Mutation_p.A128T|HSPA12B_uc010zqj.1_Missense_Mutation_p.A49T	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	215							ATP binding				0						GAAACAGCCAGCCAAGCAGTT	0.642													20	28					0	0	0.00278032	0	0
CDS2	8760	broad.mit.edu	37	20	5154287	5154287	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:5154287T>G	uc002wls.2	+	2	433	c.176T>G	c.(175-177)CTT>CGT	p.L59R	CDS2_uc002wlr.1_5'UTR|CDS2_uc010zqt.1_RNA|CDS2_uc002wlu.2_Intron|CDS2_uc010zqu.1_Intron|CDS2_uc002wlv.2_5'Flank	NM_003818	NP_003809	O95674	CDS2_HUMAN	phosphatidate cytidylyltransferase 2	59					phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphatidate cytidylyltransferase activity				0						AATAGGGCCCTTTCCAACTTG	0.567													72	101					0	0	0.000781405	0	0
MCM8	84515	broad.mit.edu	37	20	5932719	5932719	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:5932719A>G	uc002wmi.2	+	2	435	c.58A>G	c.(58-60)AGG>GGG	p.R20G	TRMT6_uc002wmh.1_5'Flank|TRMT6_uc010zra.1_5'Flank|TRMT6_uc010gbn.1_5'Flank|TRMT6_uc010gbo.1_5'Flank|MCM8_uc002wmj.2_Missense_Mutation_p.R20G|MCM8_uc002wmk.2_Missense_Mutation_p.R20G|MCM8_uc002wml.2_Missense_Mutation_p.R20G|MCM8_uc010gbp.2_Missense_Mutation_p.R20G	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	20					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						AAGCTGGAAAAGGGGAAGAGG	0.428													4	38					0	0	0.000602214	0	0
BMP2	650	broad.mit.edu	37	20	6759677	6759677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:6759677G>A	uc002wmu.1	+	3	1917	c.1132G>A	c.(1132-1134)GAA>AAA	p.E378K		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	378					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	TGACGAGAATGAAAAGGTTGT	0.378													31	38					0	0	0.00111076	0	0
PAK7	57144	broad.mit.edu	37	20	9525085	9525085	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:9525085C>T	uc002wnl.2	-	9	2345	c.1800G>A	c.(1798-1800)AGG>AGA	p.R600R	PAK7_uc002wnk.2_Silent_p.R600R|PAK7_uc002wnj.2_Silent_p.R600R|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	600	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CCAATGATTTCCTCTTCGGCA	0.453													42	43					0	0	0.00222228	0	0
SEC23B	10483	broad.mit.edu	37	20	18507066	18507066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:18507066C>T	uc002wqz.1	+	8	1327	c.884C>T	c.(883-885)CCC>CTC	p.P295L	SEC23B_uc002wra.1_Missense_Mutation_p.P295L|SEC23B_uc002wrb.1_Missense_Mutation_p.P295L|SEC23B_uc010zsb.1_Missense_Mutation_p.P277L|SEC23B_uc002wrc.1_Missense_Mutation_p.P295L	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	295					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						ACTGGAGGTCCCCCTACCCAA	0.438													20	24					0	0	0.000958276	0	0
C20orf26	26074	broad.mit.edu	37	20	20037439	20037439	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:20037439C>T	uc002wru.2	+	2	218	c.142C>T	c.(142-144)CTA>TTA	p.L48L	C20orf26_uc010gcw.1_Intron|C20orf26_uc010zse.1_Silent_p.L48L|C20orf26_uc010zsf.1_Silent_p.L48L|CRNKL1_uc002wrs.2_5'Flank|CRNKL1_uc002wrt.1_5'Flank	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	48										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CATCTATCTTCTGTAAGTAGA	0.224													38	61					0	0	0.00128727	0	0
THBD	7056	broad.mit.edu	37	20	23028577	23028577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:23028577G>A	uc002wss.2	-	1	1725	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	THBD_uc002wst.1_RNA	NM_000361	NP_000352	P07204	TRBM_HUMAN	thrombomodulin precursor	522	Helical; (Potential).				blood coagulation|leukocyte migration|negative regulation of fibrinolysis|negative regulation of platelet activation	cell surface|integral to plasma membrane	calcium ion binding|protein binding|transmembrane receptor activity				0	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)				Drotrecogin alfa(DB00055)	GCTCGCGATGGAGATGCCTAT	0.692													4	8					0	0	0.00116845	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966593	23966593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:23966593G>A	uc002wts.2	-	4	456	c.323C>T	c.(322-324)TCC>TTC	p.S108F	GGTLC1_uc002wtu.2_Missense_Mutation_p.S108F	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	108							gamma-glutamyltransferase activity			ovary(1)	1						CGGGCACATGGACGAGAGCGG	0.682													43	55					0	0	0.000781405	0	0
C20orf191	149934	broad.mit.edu	37	20	26084307	26084307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:26084307C>T	uc002wvj.3	-	2	164	c.109G>A	c.(109-111)GAT>AAT	p.D37N		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						AATGCTGGATCCTTTAGAGAA	0.393													7	52					0	0	0.00198382	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333													6	76					0	0	0.00198382	0	0
FRG1B	284802	broad.mit.edu	37	20	29628278	29628278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:29628278G>A	uc010ztl.1	+	3	222	c.190G>A	c.(190-192)GCA>ACA	p.A64T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A16T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGCAATGAAGCAGGGGACAT	0.373													5	64					0	0	0.00198382	0	0
FRG1B	284802	broad.mit.edu	37	20	29628299	29628299	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:29628299A>G	uc010ztl.1	+	3	243	c.211A>G	c.(211-213)AGT>GGT	p.S71G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						AGAAGCAAAAAGTAAAACAGC	0.363													5	56					0	0	0.000602214	0	0
TTLL9	164395	broad.mit.edu	37	20	30527068	30527068	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:30527068C>T	uc010gdx.1	+	14	1495	c.1242C>T	c.(1240-1242)CTC>CTT	p.L414L	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_Intron|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Silent_p.L316L|TTLL9_uc010ztp.1_Intron|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	414					protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ACACACATCTCGGTATGTAGG	0.532													40	19					0	0	0.00148497	0	0
POFUT1	23509	broad.mit.edu	37	20	30822425	30822425	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:30822425C>T	uc002wxp.2	+	7	1177	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	POFUT1_uc010ztt.1_Silent_p.F268F|POFUT1_uc010ztu.1_Silent_p.F165F	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	376					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTTCTTTCTTCGGCATGGACA	0.607													36	129					0	0	0.00170553	0	0
C20orf114	92747	broad.mit.edu	37	20	31877768	31877768	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:31877768T>C	uc002wyw.1	+	4	496	c.335T>C	c.(334-336)ATC>ACC	p.I112T	C20orf114_uc010gej.1_Missense_Mutation_p.I112T	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	112						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CTAGTCAAGATCCCCCTGGAC	0.582													3	91					0	0	6.4e-05	0	0
NCOA6	23054	broad.mit.edu	37	20	33329375	33329375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:33329375G>A	uc002xav.2	-	12	7256	c.4685C>T	c.(4684-4686)CCC>CTC	p.P1562L	NCOA6_uc002xaw.2_Missense_Mutation_p.P1562L	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1562					brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						ACTCAATTCGGGATGCACAAG	0.463													172	77					0	0	0.000781405	0	0
TRPC4AP	26133	broad.mit.edu	37	20	33592285	33592285	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:33592285G>A	uc002xbk.2	-	17	2059	c.2025C>T	c.(2023-2025)ATC>ATT	p.I675I	TRPC4AP_uc002xbj.2_RNA|TRPC4AP_uc010zuq.1_Silent_p.I266I|TRPC4AP_uc002xbl.2_Silent_p.I667I|TRPC4AP_uc010zur.1_Silent_p.I636I	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	675					protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			GCACGTGGATGATGTTGATGA	0.592													7	39					0	0	0.000442599	0	0
FAM83C	128876	broad.mit.edu	37	20	33874858	33874859	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:33874858_33874859GG>AA	uc010zux.1	-	4	1841_1842	c.1723_1724CC>TT	c.(1723-1725)CCT>TTT	p.P575F	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.P230F	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	575										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CCGATCACCAGGTCTGAGGGAA	0.634													12	64					0	0	6.4e-05	0	0
RBM12	10137	broad.mit.edu	37	20	34242629	34242629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:34242629G>A	uc002xdq.2	-	3	848	c.616C>T	c.(616-618)CCC>TCC	p.P206S	CPNE1_uc010zvj.1_5'Flank|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.P206S|RBM12_uc002xds.2_Missense_Mutation_p.P206S	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	206	Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GGAATTGGGGGAATGGATGGC	0.577													19	78					0	0	0.00152264	0	0
EPB41L1	2036	broad.mit.edu	37	20	34778246	34778246	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:34778246G>A	uc002xfb.2	+	10	1245	c.1074G>A	c.(1072-1074)CGG>CGA	p.R358R	EPB41L1_uc002xeu.2_Silent_p.R296R|EPB41L1_uc010zvo.1_Silent_p.R358R|EPB41L1_uc002xev.2_Silent_p.R358R|EPB41L1_uc002xew.2_Silent_p.R261R|EPB41L1_uc002xex.2_Silent_p.R327R|EPB41L1_uc002xey.2_Silent_p.R285R|EPB41L1_uc002xez.2_Silent_p.R296R	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	358	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CAAACCACCGGTCAGCCAAGA	0.537													45	29					0	0	0.000781405	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060740	35060741	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:35060740_35060741CC>TT	uc002xff.2	+	3	1055_1056	c.620_621CC>TT	c.(619-621)TCC>TTT	p.S207F	DLGAP4_uc010zvp.1_Missense_Mutation_p.S207F	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	207					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				TGGTGGAGCTCCGATGACAACT	0.678													47	26					0	0	6.4e-05	0	0
DSN1	79980	broad.mit.edu	37	20	35399504	35399504	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:35399504C>G	uc010gfr.2	-	3	500	c.127G>C	c.(127-129)GAG>CAG	p.E43Q	DSN1_uc002xfz.2_Missense_Mutation_p.E43Q|DSN1_uc002xfy.3_Intron|DSN1_uc002xga.2_Missense_Mutation_p.E43Q|DSN1_uc010zvs.1_Intron|DSN1_uc002xgc.2_Missense_Mutation_p.E27Q|DSN1_uc002xgb.2_Missense_Mutation_p.E27Q	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	43					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				TGATTCATCTCCAGGGAGGCA	0.433													4	406					0	0	0.00116845	0	0
RALGAPB	57148	broad.mit.edu	37	20	37128170	37128171	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:37128170_37128171CC>AA	uc002xiw.2	+	5	891_892	c.634_635CC>AA	c.(634-636)CCA>AAA	p.P212K	RALGAPB_uc010zvz.1_Missense_Mutation_p.P212K|RALGAPB_uc002xix.2_Missense_Mutation_p.P212K|RALGAPB_uc002xiy.1_Missense_Mutation_p.P212K|RALGAPB_uc002xiz.2_5'UTR	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	212					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						TCGGTGCTTCCCAACACCTCCT	0.48													7	132					0	0	6.4e-05	0	0
LPIN3	64900	broad.mit.edu	37	20	39977295	39977295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:39977295C>T	uc002xjx.2	+	4	416	c.325C>T	c.(325-327)CCT>TCT	p.P109S	LPIN3_uc010ggh.2_Missense_Mutation_p.P109S|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	109					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				CTCACCCATCCCTTGGGGGGG	0.667													35	26					0	0	0.00128727	0	0
PTPRT	11122	broad.mit.edu	37	20	40727103	40727103	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:40727103G>A	uc002xkg.2	-	27	3988	c.3804C>T	c.(3802-3804)AAC>AAT	p.N1268N	PTPRT_uc010ggj.2_Silent_p.N1287N|PTPRT_uc010ggi.2_Silent_p.N471N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1268	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGAGGAGCAGTTGTAATCGA	0.592													77	33					0	0	0.000781405	0	0
PTPRT	11122	broad.mit.edu	37	20	40980811	40980811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:40980811C>T	uc002xkg.2	-	10	1859	c.1675G>A	c.(1675-1677)GGG>AGG	p.G559R	PTPRT_uc010ggj.2_Missense_Mutation_p.G559R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	559	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TAGGTGGTCCCTGGGTACAGA	0.562													71	31					0	0	0.000781405	0	0
PTPRT	11122	broad.mit.edu	37	20	40980866	40980866	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:40980866C>T	uc002xkg.2	-	10	1804	c.1620G>A	c.(1618-1620)GGG>GGA	p.G540G	PTPRT_uc010ggj.2_Silent_p.G540G	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	540	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGAACACTTTCCCCCTCTGGC	0.527													86	53					0	0	0.000781405	0	0
PTPRT	11122	broad.mit.edu	37	20	41419904	41419904	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:41419904G>A	uc002xkg.2	-	3	601	c.417C>T	c.(415-417)TCC>TCT	p.S139S	PTPRT_uc010ggj.2_Silent_p.S139S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	139	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGACGACCCCGGACACATTCC	0.532													35	94					0	0	0.000953801	0	0
ACOT8	10005	broad.mit.edu	37	20	44485898	44485898	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:44485898G>A	uc002xqa.1	-	1	138	c.57C>T	c.(55-57)CCC>CCT	p.P19P	ACOT8_uc010zxe.1_Silent_p.P19P|ACOT8_uc002xqc.1_Missense_Mutation_p.P11L|ACOT8_uc010zxf.1_Silent_p.P19P|ZSWIM3_uc002xqd.2_5'Flank|ZSWIM3_uc010zxg.1_5'Flank	NM_005469	NP_005460	O14734	ACOT8_HUMAN	peroxisomal acyl-CoA thioesterase 1 isoform a	19					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|interspecies interaction between organisms|peroxisome organization	peroxisomal matrix	acetyl-CoA hydrolase activity|acyl-CoA thioesterase activity|carboxylesterase activity|choloyl-CoA hydrolase activity|protein binding	p.P19S(1)		skin(1)	1		Myeloproliferative disorder(115;0.0122)				GGTCCCCAGGGGGATCGCCGC	0.672													27	18					0	0	0.000878237	0	0
SLC35C2	51006	broad.mit.edu	37	20	44986401	44986401	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:44986401G>A	uc002xro.2	-	3	673	c.132C>T	c.(130-132)TTC>TTT	p.F44F	SLC35C2_uc002xrp.2_Silent_p.F44F|SLC35C2_uc002xrq.2_Silent_p.F44F|SLC35C2_uc002xrr.2_Silent_p.F44F|SLC35C2_uc010zxn.1_Intron|SLC35C2_uc010zxo.1_Intron|SLC35C2_uc010zxp.1_Silent_p.F73F	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	44	Helical; (Potential).				transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TGAAGAGGGGGAAATGGAAGC	0.632													46	15					0	0	0.000781405	0	0
TP53RK	112858	broad.mit.edu	37	20	45315533	45315533	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:45315533G>A	uc002xsk.2	-	2	844	c.621C>T	c.(619-621)TTC>TTT	p.F207F	SLC13A3_uc002xsg.1_5'Flank|SLC13A3_uc010gho.1_5'Flank|TP53RK_uc002xsj.2_3'UTR	NM_033550	NP_291028	Q96S44	PRPK_HUMAN	p53-related protein kinase	207	Protein kinase.				lipopolysaccharide biosynthetic process	membrane|nucleus	ATP binding|p53 binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Myeloproliferative disorder(115;0.0122)				GGGTACTGAGGAAGGCCTTCT	0.468													55	167					0	0	0.000781405	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870638	51870638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:51870638G>A	uc002xwo.2	+	2	1597	c.641G>A	c.(640-642)AGA>AAA	p.R214K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	214					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GGGGCCAGCAGATTCCGATGC	0.562													12	47					0	0	0.00136819	0	0
BMP7	655	broad.mit.edu	37	20	55803385	55803385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:55803385C>T	uc010gip.1	-	2	1040	c.511G>A	c.(511-513)GCA>ACA	p.A171T	BMP7_uc010giq.1_Missense_Mutation_p.A171T|BMP7_uc002xyc.2_Missense_Mutation_p.A171T	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	171					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			AATTCGGCTGCCGTGACAGCT	0.532													149	84					0	0	0.000781405	0	0
GNAS	2778	broad.mit.edu	37	20	57430064	57430064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:57430064G>A	uc002xzw.2	+	1	2029	c.1744G>A	c.(1744-1746)GAC>AAC	p.D582N	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			AGACGAGTCCGACGATGGGAC	0.657			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			10	32					0	0	0.000442599	0	0
ZNF831	128611	broad.mit.edu	37	20	57829230	57829230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:57829230C>T	uc002yan.2	+	5	4466	c.4466C>T	c.(4465-4467)TCT>TTT	p.S1489F		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1489						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ATTGCTACCTCTGTGGCTGCC	0.493													30	112					0	0	0.00283554	0	0
EDN3	1908	broad.mit.edu	37	20	57876604	57876604	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:57876604G>A	uc002yap.2	+	2	561	c.192G>A	c.(190-192)GGG>GGA	p.G64G	EDN3_uc002yao.1_Silent_p.G64G|EDN3_uc002yaq.2_Silent_p.G64G|EDN3_uc002yar.2_Silent_p.G64G|EDN3_uc002yas.2_Silent_p.G64G	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	64					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					CTGGCGAGGGGACTGTGGCCC	0.711													38	12					0	0	0.000814825	0	0
KCNQ2	3785	broad.mit.edu	37	20	62038654	62038654	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:62038654C>T	uc002yey.1	-	17	2139	c.1962G>A	c.(1960-1962)GAG>GAA	p.E654E	KCNQ2_uc002yez.1_Silent_p.E623E|KCNQ2_uc002yfa.1_Silent_p.E636E|KCNQ2_uc002yfb.1_Silent_p.E626E	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	654	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	AGGCCTCGGTCTCTGTCGGGG	0.627													18	72					0	0	0.00152264	0	0
EEF1A2	1917	broad.mit.edu	37	20	62120348	62120348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:62120348G>A	uc002yfd.1	-	6	1288	c.1187C>T	c.(1186-1188)TCT>TTT	p.S396F	EEF1A2_uc002yfe.1_Missense_Mutation_p.S396F|EEF1A2_uc010gkg.1_Intron	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	396						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			CGCGTCTCCAGACTTCAGGGA	0.627													25	73					0	0	0.00178596	0	0
SRMS	6725	broad.mit.edu	37	20	62175632	62175632	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr20:62175632C>T	uc002yfi.1	-	2	467	c.426G>A	c.(424-426)GGG>GGA	p.G142G		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	142	SH2.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			TGAGGAAGGCCCCTGGTTCGT	0.667													8	2					0	0	0.000274275	0	0
LIPI	149998	broad.mit.edu	37	21	15538721	15538721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:15538721C>T	uc002yjm.2	-	5	768	c.758G>A	c.(757-759)GGA>GAA	p.G253E	LIPI_uc010gkw.1_Intron	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	232					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TTGTTTATTTCCTCCATTTGG	0.343													27	57					0	0	0.0024448	0	0
SON	6651	broad.mit.edu	37	21	34925573	34925573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:34925573C>T	uc002yse.1	+	3	4085	c.4036C>T	c.(4036-4038)CCG>TCG	p.P1346S	SON_uc002ysb.1_Missense_Mutation_p.P1346S|SON_uc002ysc.2_Missense_Mutation_p.P1346S|SON_uc002ysd.2_Missense_Mutation_p.P337S|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.P337S	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1346					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						CATTCTGGAGCCGCCAGCCAT	0.547													24	20					0	0	0.000878237	0	0
MRPS6	64968	broad.mit.edu	37	21	35514810	35514811	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:35514810_35514811CC>TT	uc002ytp.2	+	3	466_467	c.288_289CC>TT	c.(286-291)CACCCT>CATTCT	p.P97S		NM_032476	NP_115865	P82932	RT06_HUMAN	mitochondrial ribosomal protein S6	97					translation	mitochondrion|small ribosomal subunit	rRNA binding|structural constituent of ribosome			skin(1)	1						TTGTCAAACACCCTCTGACCCA	0.436													119	217					0	0	6.4e-05	0	0
DOPEY2	9980	broad.mit.edu	37	21	37665782	37665783	+	Missense_Mutation	DNP	GG	AA	AA	rs139219621	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:37665782_37665783GG>AA	uc002yvg.2	+	37	6889_6890	c.6810_6811GG>AA	c.(6808-6813)TTGGAC>TTAAAC	p.D2271N	DOPEY2_uc011aeb.1_Missense_Mutation_p.D2220N	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	2271					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CTCCATTCTTGGACTTTCCTGT	0.436													25	61					0	0	6.4e-05	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087096	39087096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:39087096C>T	uc011aej.1	-	3	417	c.364G>A	c.(364-366)GAC>AAC	p.D122N	KCNJ6_uc002ywo.2_Missense_Mutation_p.D122N	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	122	Extracellular (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TCTATGTGGTCCATGTCTCCC	0.448													29	50					0	0	0.001512	0	0
ERG	2078	broad.mit.edu	37	21	39817365	39817365	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:39817365G>A	uc010gnw.2	-	4	514	c.219C>T	c.(217-219)ATC>ATT	p.I73I	ERG_uc002yxa.2_Silent_p.I66I|ERG_uc011aek.1_Intron|ERG_uc010gnv.2_Intron|ERG_uc010gnx.2_Silent_p.I73I|ERG_uc011ael.1_Silent_p.I73I|ERG_uc002yxb.2_Silent_p.I73I|ERG_uc011aem.1_Silent_p.I66I|ERG_uc002yxc.3_Silent_p.I73I	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	73					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				ATTCCATTTTGATGGTGACCC	0.552													12	24					0	0	0.000566183	0	0
B3GALT5	10317	broad.mit.edu	37	21	41032744	41032744	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:41032744G>A	uc002yyb.1	+	5	850	c.258G>A	c.(256-258)GTG>GTA	p.V86V	B3GALT5_uc002yye.2_Silent_p.V86V|B3GALT5_uc002yyi.1_Silent_p.V86V|B3GALT5_uc002yyj.1_Silent_p.V86V|B3GALT5_uc002yyk.1_Silent_p.V86V|B3GALT5_uc002yyl.1_Silent_p.V86V|B3GALT5_uc002yym.1_Silent_p.V86V	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	86	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				AGAGGATGGTGAAGGGAAAGC	0.592													11	13					0	0	0.000673444	0	0
DSCAM	1826	broad.mit.edu	37	21	42080528	42080528	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:42080528C>T	uc002yyq.1	-	2	665	c.213G>A	c.(211-213)GGG>GGA	p.G71G	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	71	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CGTGGCGGATCCCGGGGACAT	0.567													21	31					0	0	0.00278032	0	0
MCM3AP	8888	broad.mit.edu	37	21	47656757	47656757	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr21:47656757T>C	uc002zir.1	-	27	5806	c.5770A>G	c.(5770-5772)ACT>GCT	p.T1924A	MCM3APAS_uc002zim.2_Intron|MCM3APAS_uc002zin.2_Intron|MCM3AP_uc002zio.1_Missense_Mutation_p.T419A|MCM3AP_uc002zip.1_Missense_Mutation_p.T665A|MCM3AP_uc002ziq.1_Missense_Mutation_p.T851A|MCM3APAS_uc002zis.1_Intron	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1924					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GGGCTAGTAGTTACAGATGTT	0.388													67	72					0	0	0.000781405	0	0
CLTCL1	8218	broad.mit.edu	37	22	19203733	19203733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:19203733G>A	uc002zpb.2	-	19	3028	c.2953C>T	c.(2953-2955)CCT>TCT	p.P985S	CLTCL1_uc011agv.1_Missense_Mutation_p.P985S|CLTCL1_uc011agw.1_Missense_Mutation_p.P985S|CLTCL1_uc002zpe.2_5'Flank|CLTCL1_uc002zpd.1_5'Flank	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	985	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					ATCTCTTCAGGATCCCGTGTT	0.398			T	?	ALCL								25	35					0	0	0.00178596	0	0
RTN4R	65078	broad.mit.edu	37	22	20229843	20229843	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:20229843G>A	uc002zrv.2	-	2	1014	c.813C>T	c.(811-813)CTC>CTT	p.L271L	RTN4R_uc002zru.2_Silent_p.L43L	NM_023004	NP_075380	Q9BZR6	RTN4R_HUMAN	reticulon 4 receptor precursor	271	LRRCT.				axonogenesis|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	anchored to membrane|cell surface|endoplasmic reticulum|plasma membrane	protein binding|receptor activity				0	Colorectal(54;0.0993)					GCCAGGCCCAGAGTGGGCGTG	0.682													11	13					0	0	0.00185496	0	0
YPEL1	29799	broad.mit.edu	37	22	22057767	22057768	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:22057767_22057768CC>TT	uc002zvl.2	-	4	494	c.162_splice	c.e4-1	p.V54_splice	YPEL1_uc002zvm.2_Splice_Site	NM_013313	NP_037445	O60688	YPEL1_HUMAN	yippee-like 1							nucleus					0	Colorectal(54;0.105)					CCACGTTCACCCTGCGGGGACA	0.698													15	30					0	0	6.4e-05	0	0
SLC2A11	66035	broad.mit.edu	37	22	24226491	24226491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:24226491G>A	uc002zyn.3	+	11	1264	c.1165G>A	c.(1165-1167)GGA>AGA	p.G389R	SLC2A11_uc002zym.3_Missense_Mutation_p.G396R|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Missense_Mutation_p.G387R|SLC2A11_uc002zyp.3_Missense_Mutation_p.G392R	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	389	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						CCTTCTAGCCGGAGTGACGGG	0.672													9	15					0	0	0.000442599	0	0
GGT5	2687	broad.mit.edu	37	22	24621549	24621549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:24621549C>T	uc002zzo.3	-	9	1718	c.1301G>A	c.(1300-1302)CGA>CAA	p.R434Q	GGT5_uc002zzp.3_Missense_Mutation_p.R434Q|GGT5_uc002zzr.3_Missense_Mutation_p.R402Q|GGT5_uc002zzq.3_Missense_Mutation_p.R402Q|GGT5_uc011ajm.1_Missense_Mutation_p.R357Q	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	434	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						CCGGGGGCATCGCTCGCATAA	0.647													13	17					0	0	0.00074312	0	0
MYO18B	84700	broad.mit.edu	37	22	26422964	26422964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:26422964G>A	uc003abz.1	+	43	7274	c.7024G>A	c.(7024-7026)GAA>AAA	p.E2342K	MYO18B_uc003aca.1_Missense_Mutation_p.E2223K|MYO18B_uc010guy.1_Missense_Mutation_p.E2224K|MYO18B_uc010guz.1_Missense_Mutation_p.E2222K|MYO18B_uc011aka.1_Missense_Mutation_p.E1496K|MYO18B_uc011akb.1_Missense_Mutation_p.E1855K|MYO18B_uc010gva.1_Missense_Mutation_p.E325K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2342						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCTACTCCCCGAAAAGTCGAA	0.562													27	33					0	0	0.00106085	0	0
CABP7	164633	broad.mit.edu	37	22	30123667	30123667	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:30123667C>T	uc003agl.2	+	2	196	c.126C>T	c.(124-126)TTC>TTT	p.F42F		NM_182527	NP_872333	Q86V35	CABP7_HUMAN	calcium binding protein 7	42	Cytoplasmic (Potential).|EF-hand 1.					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding				0			OV - Ovarian serous cystadenocarcinoma(5;0.00442)|Epithelial(10;0.215)|all cancers(5;0.233)			GAGAGGCCTTCAAGGTGTTTG	0.607													38	46					0	0	0.00195071	0	0
FBXO7	25793	broad.mit.edu	37	22	32894465	32894465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:32894465C>T	uc003amq.2	+	9	1800	c.1517C>T	c.(1516-1518)CCC>CTC	p.P506L	FBXO7_uc003amr.2_Missense_Mutation_p.P392L|FBXO7_uc003ams.2_Missense_Mutation_p.P350L|FBXO7_uc003amt.2_Missense_Mutation_p.P427L|FBXO7_uc003amu.2_Missense_Mutation_p.P392L|FBXO7_uc003amv.2_Missense_Mutation_p.P205L	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	506					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						GACAGATTTCCCTTTAGACCC	0.507													14	13					0	0	0.00185496	0	0
APOL2	23780	broad.mit.edu	37	22	36624020	36624020	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:36624020G>A	uc003aoz.2	-	5	780	c.444C>T	c.(442-444)CTC>CTT	p.L148L	APOL2_uc011amm.1_Silent_p.L260L|APOL2_uc003apa.2_Silent_p.L148L	NM_030882	NP_112092	Q9BQE5	APOL2_HUMAN	apolipoprotein L2	148					acute-phase response|cholesterol metabolic process|lipid transport|lipoprotein metabolic process|maternal process involved in female pregnancy|multicellular organismal development	endoplasmic reticulum membrane|extracellular region	high-density lipoprotein particle binding|lipid binding|receptor binding				0						CAGTGTCCAAGAGCACAAAAC	0.562													11	19					0	0	0.00136819	0	0
CYTH4	27128	broad.mit.edu	37	22	37708069	37708069	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:37708069G>A	uc003arf.2	+	12	1082	c.966G>A	c.(964-966)CTG>CTA	p.L322L	CYTH4_uc011amw.1_Silent_p.L265L|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	322	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGTTCTGCCTGGAGCTCTACA	0.632													15	28					0	0	0.000422831	0	0
MGAT3	4248	broad.mit.edu	37	22	39884365	39884365	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:39884365A>C	uc003axv.3	+	2	1252	c.1013A>C	c.(1012-1014)GAG>GCG	p.E338A	MGAT3_uc010gxy.2_Missense_Mutation_p.E338A	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	338	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GGCTGGACCGAGCCCTTCGCC	0.632													52	61					0	0	0.000781405	0	0
MEI1	150365	broad.mit.edu	37	22	42128268	42128268	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:42128268G>A	uc003baz.1	+	10	1141	c.1116G>A	c.(1114-1116)AGG>AGA	p.R372R	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Silent_p.R372R|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	372							binding			central_nervous_system(1)|skin(1)	2						CAGTGGTGAGGAGCCTGCAGG	0.557													6	9					0	0	0.00198382	0	0
MEI1	150365	broad.mit.edu	37	22	42141946	42141946	+	Silent	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:42141946C>G	uc003baz.1	+	14	1621	c.1596C>G	c.(1594-1596)CCC>CCG	p.P532P	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Silent_p.P532P|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	532							binding			central_nervous_system(1)|skin(1)	2						TCACAGCTCCCAGCGCCAAGA	0.498													3	25					0	0	6.4e-05	0	0
SREBF2	6721	broad.mit.edu	37	22	42263286	42263286	+	Splice_Site	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:42263286T>C	uc003bbi.2	+	2	707	c.538_splice	c.e2+2	p.V180_splice	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription						cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						GCTTTCAAGGTGATTCAGAAG	0.448													26	60					0	0	0.00127121	0	0
FAM118A	55007	broad.mit.edu	37	22	45719294	45719294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:45719294C>T	uc003bfz.3	+	4	902	c.286C>T	c.(286-288)CGG>TGG	p.R96W	FAM118A_uc003bga.3_Missense_Mutation_p.R96W	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	96						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TGATCTGATCCGGAAGATGTC	0.547													19	35					0	0	0.00278032	0	0
TRMU	55687	broad.mit.edu	37	22	46752825	46752826	+	Missense_Mutation	DNP	CC	TG	TG	rs142346622		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:46752825_46752826CC>TG	uc003bhp.2	+	11	1552_1553	c.1188_1189CC>TG	c.(1186-1191)GGCCAG>GGTGAG	p.Q397E	TRMU_uc003bhq.2_Missense_Mutation_p.Q179E|TRMU_uc003bhs.2_Nonsense_Mutation_p.P369*|TRMU_uc003bhr.2_Missense_Mutation_p.Q283E|TRMU_uc003bht.2_Missense_Mutation_p.Q250E|TRMU_uc003bhu.2_Missense_Mutation_p.Q179E|TRMU_uc003bhv.2_Nonsense_Mutation_p.P222*	NM_018006	NP_060476	O75648	MTU1_HUMAN	tRNA 5-methylaminomethyl-2-thiouridylate	397						mitochondrion	ATP binding|sulfurtransferase activity|tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity|tRNA binding			ovary(1)	1		Ovarian(80;0.00965)|Breast(42;0.0194)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00449)|LUAD - Lung adenocarcinoma(64;0.248)		TCCAGAAGGGCCAGCGCAGAGC	0.614													21	20					0	0	6.4e-05	0	0
CELSR1	9620	broad.mit.edu	37	22	46835125	46835125	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:46835125C>G	uc003bhw.1	-	3	4367	c.4367G>C	c.(4366-4368)CGG>CCG	p.R1456P		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1456	Extracellular (Potential).|Laminin G-like 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TCTCAGGCCCCGGAAGGTGAC	0.642													4	84					0	0	0.000602214	0	0
CRELD2	79174	broad.mit.edu	37	22	50313429	50313429	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:50313429C>T	uc003bja.2	+	3	399	c.264C>T	c.(262-264)TTC>TTT	p.F88F	ALG12_uc003biy.2_5'Flank|CRELD2_uc003biz.3_Silent_p.F88F|CRELD2_uc010haj.2_Silent_p.F88F|CRELD2_uc010hal.2_Silent_p.F88F|CRELD2_uc010hak.2_Silent_p.F88F|CRELD2_uc010ham.2_Silent_p.F88F	NM_024324	NP_077300	Q6UXH1	CREL2_HUMAN	cysteine-rich with EGF-like domains 2 isoform b	88						endoplasmic reticulum|extracellular region	calcium ion binding				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.198)|LUAD - Lung adenocarcinoma(64;0.247)		GCAGCGACTTCGAATGCAATC	0.567													10	26					0	0	0.00136819	0	0
IL17REL	400935	broad.mit.edu	37	22	50436709	50436709	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:50436709T>G	uc003bje.1	-	10	863	c.631A>C	c.(631-633)ACG>CCG	p.T211P		NM_001001694	NP_001001694	Q6ZVW7	I17EL_HUMAN	interleukin 17 receptor E-like	211										pancreas(1)	1		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		TAGTAGACCGTGTCCCACAGC	0.572													12	19					0	0	0.00136819	0	0
CPT1B	1375	broad.mit.edu	37	22	51011432	51011433	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr22:51011432_51011433GG>AA	uc003bmk.3	-	10	1385_1386	c.1223_1224CC>TT	c.(1222-1224)GCC>GTT	p.A408V	CPT1B_uc003bml.2_Missense_Mutation_p.A408V|CPT1B_uc003bmm.2_Missense_Mutation_p.A408V|CPT1B_uc003bmo.2_Missense_Mutation_p.A408V|CPT1B_uc011asa.1_Missense_Mutation_p.A374V|CPT1B_uc003bmn.2_Missense_Mutation_p.A408V|CPT1B_uc011asb.1_Intron|CHKB-CPT1B_uc003bmp.2_Missense_Mutation_p.A205V	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	408	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		TGGCCTCCAAGGCAGCCTTATT	0.599													22	38					0	0	6.4e-05	0	0
CHL1	10752	broad.mit.edu	37	3	425548	425548	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:425548G>A	uc003bou.2	+	18	2449	c.2178G>A	c.(2176-2178)AAG>AAA	p.K726K	CHL1_uc003bot.2_Silent_p.K742K|CHL1_uc003bow.1_Silent_p.K726K|CHL1_uc011asi.1_Silent_p.K742K|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	726	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CTCAACCCAAGGAAATGATTA	0.343													35	40					0	0	0.00148497	0	0
CNTN4	152330	broad.mit.edu	37	3	2777901	2777901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:2777901G>A	uc003bpc.2	+	4	279	c.58G>A	c.(58-60)GAT>AAT	p.D20N	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.D20N	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	20					axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CATTTCAGATGATTCCACACT	0.348													73	112					0	0	0.000781405	0	0
CNTN4	152330	broad.mit.edu	37	3	3080684	3080684	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:3080684G>A	uc003bpc.2	+	18	2381	c.2160G>A	c.(2158-2160)TGG>TGA	p.W720*	CNTN4_uc003bpb.1_Nonsense_Mutation_p.W391*|CNTN4_uc003bpe.2_Nonsense_Mutation_p.W392*|CNTN4_uc003bpf.2_Nonsense_Mutation_p.W391*|CNTN4_uc003bpg.2_5'Flank	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	720	Fibronectin type-III 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TTATAACCTGGGAGGTAAATG	0.438													20	46					0	0	0.00188189	0	0
SRGAP3	9901	broad.mit.edu	37	3	9027492	9027492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:9027492G>A	uc003brf.1	-	22	3687	c.3011C>T	c.(3010-3012)CCC>CTC	p.P1004L	SRGAP3_uc003brg.1_Missense_Mutation_p.P980L	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	1004					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CGAGCTGACGGGGCCTGGCGG	0.667			T	RAF1	pilocytic astrocytoma								26	34					0	0	0.000720815	0	0
ATP2B2	491	broad.mit.edu	37	3	10370590	10370590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:10370590C>T	uc003bvt.2	-	23	4079	c.3640G>A	c.(3640-3642)GAC>AAC	p.D1214N	ATP2B2_uc003bvv.2_Missense_Mutation_p.D1169N|ATP2B2_uc003bvw.2_Missense_Mutation_p.D1169N|ATP2B2_uc003bvs.2_RNA|ATP2B2_uc010hdo.2_Missense_Mutation_p.D919N|hsa-mir-378b|MI0014154_5'Flank	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1214	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						ATCCCACTGTCGATGGCGCTG	0.572													23	51					0	0	0.000586117	0	0
FGD5	152273	broad.mit.edu	37	3	14861592	14861592	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:14861592C>T	uc003bzc.2	+	1	1124	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	FGD5_uc011avk.1_Silent_p.F338F	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	338					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TGGAGGACTTCGTGACTTCCC	0.537													30	42					0	0	0.00283554	0	0
FGD5	152273	broad.mit.edu	37	3	14905750	14905750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:14905750C>T	uc003bzc.2	+	2	2751	c.2641C>T	c.(2641-2643)CCC>TCC	p.P881S	FGD5_uc011avk.1_Missense_Mutation_p.P881S	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	881					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TTCAAGAGACCCCAGTGTCAC	0.587													23	40					0	0	0.00106085	0	0
KAT2B	8850	broad.mit.edu	37	3	20178515	20178515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:20178515G>A	uc003cbq.2	+	12	2277	c.1831G>A	c.(1831-1833)GAA>AAA	p.E611K	hsa-mir-3135|MI0014156_5'Flank	NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	611	N-acetyltransferase.				cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATATGCAGATGAATATGCAAT	0.383													20	31					0	0	0.00229938	0	0
TMPPE	643853	broad.mit.edu	37	3	33135664	33135664	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:33135664G>A	uc003cfk.2	-	2	215	c.24C>T	c.(22-24)TCC>TCT	p.S8S	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Intron	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	8	Helical; (Potential).					integral to membrane	metal ion binding				0						TCGCGCCTAGGGACAGCTGCC	0.577													29	54					0	0	0.00058488	0	0
CLASP2	23122	broad.mit.edu	37	3	33614738	33614738	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:33614738C>A	uc003cfu.2	-	25	2917	c.2563G>T	c.(2563-2565)GGT>TGT	p.G855C	CLASP2_uc003cfs.2_Missense_Mutation_p.G63C|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Missense_Mutation_p.G456C	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	864										ovary(3)|central_nervous_system(1)	4						GGAATACTACCATTTCGAGAA	0.438													11	208					0.000978159	0.00400299	0.000978159	1	0
TRANK1	9881	broad.mit.edu	37	3	36872699	36872700	+	Missense_Mutation	DNP	CC	TT	TT	rs113812469		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:36872699_36872700CC>TT	uc003cgj.2	-	12	6894_6895	c.6592_6593GG>AA	c.(6592-6594)GGG>AAG	p.G2198K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2748					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGAAGCTGCCCCCTCAAACGCT	0.545													21	25					0	0	6.4e-05	0	0
DLEC1	9940	broad.mit.edu	37	3	38138118	38138118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:38138118G>A	uc003cho.1	+	15	2251	c.2230G>A	c.(2230-2232)GAA>AAA	p.E744K	DLEC1_uc003chp.1_Missense_Mutation_p.E744K|DLEC1_uc010hgv.1_Missense_Mutation_p.E744K|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	744					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GATTGTCCTGGAAATCGAGGT	0.507													55	62					0	0	0.000781405	0	0
SCN5A	6331	broad.mit.edu	37	3	38591832	38591832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:38591832C>T	uc003cio.2	-	28	6225	c.6031G>A	c.(6031-6033)GAC>AAC	p.D2011N	SCN5A_uc003cin.2_Missense_Mutation_p.D2010N|SCN5A_uc003cil.3_Missense_Mutation_p.D2011N|SCN5A_uc010hhi.2_Missense_Mutation_p.D1993N|SCN5A_uc010hhk.2_Missense_Mutation_p.D1978N|SCN5A_uc011ayr.1_Missense_Mutation_p.D1957N	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	2011					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GACTCACGGTCCCTGTCCGGA	0.572													53	58					0	0	0.000781405	0	0
SCN11A	11280	broad.mit.edu	37	3	38892117	38892117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:38892117C>T	uc011ays.1	-	25	4381	c.4182G>A	c.(4180-4182)ATG>ATA	p.M1394I	SCN11A_uc003cis.1_Missense_Mutation_p.M59I	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1394	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGATGGATTTCATGGCTTTGG	0.388													29	58					0	0	0.00178596	0	0
SCN11A	11280	broad.mit.edu	37	3	38946752	38946752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:38946752C>T	uc011ays.1	-	11	1733	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	512					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTCCATGCTCATCAAAGTGG	0.507													40	55					0	0	0.00170553	0	0
SCN11A	11280	broad.mit.edu	37	3	38991643	38991643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:38991643G>A	uc011ays.1	-	1	410	c.211C>T	c.(211-213)CGT>TGT	p.R71C		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	71					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGAGCTCACGAGGAATGTCG	0.443													46	103					0	0	0.000781405	0	0
XIRP1	165904	broad.mit.edu	37	3	39229317	39229317	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:39229317C>T	uc003cjk.1	-	2	1841	c.1620G>A	c.(1618-1620)CAG>CAA	p.Q540Q	XIRP1_uc003cji.2_Silent_p.Q540Q|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	540	Interaction with CTNNB1 (By similarity).						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCACCACTTCCTGCCGGGTGA	0.612													20	20					0	0	0.00229938	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307342	39307342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:39307342G>A	uc003cjl.2	-	2	751	c.659C>T	c.(658-660)TCC>TTC	p.S220F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	220	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		GTTCTTGCAGGAAAACAGCGT	0.453													39	74					0	0	0.000680045	0	0
ZNF621	285268	broad.mit.edu	37	3	40574105	40574105	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:40574105C>T	uc003ckm.2	+	5	1060	c.844C>T	c.(844-846)CAG>TAG	p.Q282*	ZNF621_uc003ckn.2_Nonsense_Mutation_p.Q282*|ZNF621_uc003cko.2_Nonsense_Mutation_p.Q247*|ZNF621_uc011aze.1_Nonsense_Mutation_p.Q274*	NM_001098414	NP_001091884	Q6ZSS3	ZN621_HUMAN	zinc finger protein 621	282	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0515)|Kidney(284;0.0648)		TATTGTCCATCAGAGAATTCA	0.433													14	32					0	0	0.00185496	0	0
CTNNB1	1499	broad.mit.edu	37	3	41275738	41275738	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:41275738C>T	uc010hia.1	+	11	1789	c.1633C>T	c.(1633-1635)CAG>TAG	p.Q545*	CTNNB1_uc003ckp.2_Nonsense_Mutation_p.Q545*|CTNNB1_uc003ckq.2_Nonsense_Mutation_p.Q545*|CTNNB1_uc003ckr.2_Nonsense_Mutation_p.Q545*|CTNNB1_uc011azf.1_Nonsense_Mutation_p.Q538*|CTNNB1_uc011azg.1_Nonsense_Mutation_p.Q473*|CTNNB1_uc003cks.2_3'UTR|CTNNB1_uc003ckt.1_5'Flank	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	545	ARM 10.				adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	TCGTGCACATCAGGATACCCA	0.478		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				18	25					0	0	0.000566183	0	0
ZNF501	115560	broad.mit.edu	37	3	44776471	44776471	+	Silent	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:44776471A>T	uc003cnu.1	+	3	959	c.558A>T	c.(556-558)GGA>GGT	p.G186G	ZNF501_uc003cnv.1_Intron	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		TTCATTCAGGAGAGAAGCCCT	0.408													19	27					0	0	0.000958276	0	0
CCR1	1230	broad.mit.edu	37	3	46245543	46245543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:46245543G>A	uc003cph.1	-	2	333	c.262C>T	c.(262-264)CCC>TCC	p.P88S	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	88	Helical; Name=2; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		ATCCAGAAGGGAAGCGTGAAC	0.478													51	46					0	0	0.000781405	0	0
LTF	4057	broad.mit.edu	37	3	46479494	46479494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:46479494C>T	uc003cpq.2	-	16	2073	c.2035G>A	c.(2035-2037)GAA>AAA	p.E679K	LTF_uc003fzr.2_Missense_Mutation_p.E635K|LTF_uc010hjh.2_Missense_Mutation_p.E677K|LTF_uc003cpr.2_Missense_Mutation_p.E666K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	679	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	AAATATTTTTCATATGTTGTT	0.453													60	117					0	0	0.000781405	0	0
PTH1R	5745	broad.mit.edu	37	3	46944973	46944973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:46944973C>T	uc003cqm.2	+	16	1812	c.1609C>T	c.(1609-1611)CAT>TAT	p.H537Y	PTH1R_uc003cqn.2_Missense_Mutation_p.H537Y	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	537	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GCTGCCTGGCCATGCCAAGCC	0.677									Ollier_disease_/_Maffuci_syndrome				32	33					0	0	0.0024448	0	0
NBEAL2	23218	broad.mit.edu	37	3	47045731	47045731	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:47045731C>T	uc003cqp.2	+	37	6225	c.6046C>T	c.(6046-6048)CAG>TAG	p.Q2016*	NBEAL2_uc010hjm.1_Nonsense_Mutation_p.Q1393*|NBEAL2_uc010hjn.1_Nonsense_Mutation_p.Q412*|NBEAL2_uc010hjo.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	2016							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		ATCTCCTAGCCAGACTCCCAG	0.607													42	103					0	0	0.000781405	0	0
SETD2	29072	broad.mit.edu	37	3	47163851	47163851	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:47163851T>C	uc003cqs.2	-	3	2328	c.2275A>G	c.(2275-2277)AAA>GAA	p.K759E	SETD2_uc003cqv.2_Missense_Mutation_p.K748E	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	759					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		GACATGAGTTTATCTTGGTGT	0.403			N|F|S|Mis		clear cell renal carcinoma								63	101					0	0	0.000781405	0	0
CDC25A	993	broad.mit.edu	37	3	48200940	48200940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:48200940C>T	uc003csh.1	-	14	1692	c.1328G>A	c.(1327-1329)CGG>CAG	p.R443Q	CDC25A_uc003csi.1_Missense_Mutation_p.R403Q	NM_001789	NP_001780	P30304	MPIP1_HUMAN	cell division cycle 25A isoform a	443	Rhodanese.				cell cycle checkpoint|cell division|cell proliferation|cellular response to UV|DNA replication|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|kidney(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000685)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		TCTCACATACCGGCACCTAGT	0.512													16	22					0	0	0.000422831	0	0
PLXNB1	5364	broad.mit.edu	37	3	48462730	48462730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:48462730C>T	uc003csw.2	-	8	1987	c.1717G>A	c.(1717-1719)GGG>AGG	p.G573R	PLXNB1_uc003csu.2_Missense_Mutation_p.G573R|PLXNB1_uc003csx.2_Missense_Mutation_p.G573R|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	573	Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGATGTTCCCCAAAGTGGCAG	0.612													32	33					0	0	0.00128727	0	0
USP19	10869	broad.mit.edu	37	3	49154907	49154907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:49154907G>A	uc003cwd.1	-	5	730	c.569C>T	c.(568-570)CCC>CTC	p.P190L	USP19_uc003cwa.2_5'UTR|USP19_uc003cvz.3_Missense_Mutation_p.P190L|USP19_uc011bcg.1_Missense_Mutation_p.P190L|USP19_uc003cwb.2_Missense_Mutation_p.P175L|USP19_uc003cwc.1_5'Flank|USP19_uc011bch.1_Missense_Mutation_p.P190L|USP19_uc011bci.1_Missense_Mutation_p.P175L	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	190	Cytoplasmic (Potential).|CS 1.				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CACCTTTTTGGGCAGTGTCAG	0.552													20	33					0	0	0.00229938	0	0
C3orf62	375341	broad.mit.edu	37	3	49314045	49314045	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:49314045C>T	uc003cwn.2	-	1	464	c.261G>A	c.(259-261)GAG>GAA	p.E87E	C3orf62_uc003cwm.2_5'Flank	NM_198562	NP_940964	Q6ZUJ4	CC062_HUMAN	hypothetical protein LOC375341	87											0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GGTTCTCATTCTCAGGAGCAC	0.532													38	43					0	0	0.000953801	0	0
SEMA3F	6405	broad.mit.edu	37	3	50211368	50211368	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:50211368C>T	uc003cyj.2	+	3	453	c.255C>T	c.(253-255)ATC>ATT	p.I85I	SEMA3F_uc003cyk.2_Silent_p.I85I	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	85	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		TGCACGACATCAACCGCGAGC	0.617													19	16					0	0	0.00047179	0	0
SLC38A3	10991	broad.mit.edu	37	3	50254688	50254688	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:50254688G>A	uc003cyn.3	+	8	708	c.567G>A	c.(565-567)GGG>GGA	p.G189G	SLC38A3_uc011bdl.1_Silent_p.G164G|SLC38A3_uc011bdm.1_Silent_p.G120G	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	189	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	ACATGAACGGGAACTACCTGG	0.368													10	10					0	0	0.000978159	0	0
IQCF2	389123	broad.mit.edu	37	3	51897327	51897327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:51897327G>A	uc003dbt.1	+	3	474	c.436G>A	c.(436-438)GGC>AGC	p.G146S	IQCF1_uc003dbq.3_Intron|IQCF2_uc003dbu.1_RNA	NM_203424	NP_982248	Q8IXL9	IQCF2_HUMAN	IQ motif containing F2	146											0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TCTCCTCCAGGGCCACTGTGT	0.562													37	68					0	0	0.00111076	0	0
PHF7	51533	broad.mit.edu	37	3	52456886	52456886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:52456886C>T	uc003ddy.2	+	10	1714	c.908C>T	c.(907-909)GCT>GTT	p.A303V	PHF7_uc003ddz.2_Missense_Mutation_p.A264V	NM_016483	NP_057567	Q9BWX1	PHF7_HUMAN	PHD finger protein 7 isoform 1	303						nucleus	zinc ion binding			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;1.71e-05)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)|OV - Ovarian serous cystadenocarcinoma(275;0.0275)		TGTTCACCTGCTGCAGCCACA	0.577													40	67					0	0	0.00170553	0	0
CACNA1D	776	broad.mit.edu	37	3	53736685	53736685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:53736685G>A	uc003dgv.3	+	9	1401	c.1238G>A	c.(1237-1239)AGA>AAA	p.R413K	CACNA1D_uc003dgu.3_Missense_Mutation_p.R413K|CACNA1D_uc003dgy.3_Missense_Mutation_p.R413K|CACNA1D_uc003dgw.3_Missense_Mutation_p.R60K	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	413	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TCAAAGGAAAGAGAGAAGGCA	0.522													16	24					0	0	0.000958276	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604048	54604048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:54604048G>A	uc003dhf.2	+	8	853	c.805G>A	c.(805-807)GGA>AGA	p.G269R	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.G175R|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.G3R	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	269	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CAGCATGAAAGGACTCCGTCT	0.433													39	69					0	0	0.00111076	0	0
TMF1	7110	broad.mit.edu	37	3	69092986	69092986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:69092986G>A	uc003dnn.2	-	4	1740	c.1493C>T	c.(1492-1494)TCC>TTC	p.S498F	TMF1_uc011bfx.1_Missense_Mutation_p.S501F	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	498	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		ATCTTTCAAGGAAGAAATGCT	0.323													13	35					0	0	0.00136819	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433158	73433158	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:73433158C>T	uc003dpl.1	-	10	2655	c.2559G>A	c.(2557-2559)CAG>CAA	p.Q853Q	PDZRN3_uc011bgh.1_Silent_p.Q510Q|PDZRN3_uc010hoe.1_Silent_p.Q551Q|PDZRN3_uc011bgf.1_Silent_p.Q570Q|PDZRN3_uc011bgg.1_Silent_p.Q573Q	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	853							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TGCCCAGCTTCTGGCTGGGCG	0.652													27	33					0	0	0.000720815	0	0
EPHA6	285220	broad.mit.edu	37	3	96706675	96706675	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:96706675G>C	uc010how.1	+	3	995	c.952G>C	c.(952-954)GTT>CTT	p.V318L	EPHA6_uc003drp.1_Missense_Mutation_p.V318L	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	223	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CATTCCAAGGGTTGATTCCTC	0.483													43	71					0	0	0.000680045	0	0
EPHA6	285220	broad.mit.edu	37	3	96706808	96706808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:96706808G>A	uc010how.1	+	3	1128	c.1085G>A	c.(1084-1086)GGA>GAA	p.G362E	EPHA6_uc003drp.1_Missense_Mutation_p.G362E	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	267	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGCAGTACAGGATATGAAGAA	0.348													14	18					0	0	0.00185496	0	0
EPHA6	285220	broad.mit.edu	37	3	96962891	96962891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:96962891G>A	uc010how.1	+	5	1409	c.1366G>A	c.(1366-1368)GAT>AAT	p.D456N	EPHA6_uc003drp.1_Missense_Mutation_p.D456N	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	361	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AGGGAGAAAAGATCTCACATA	0.478													9	6					0	0	0.000442599	0	0
EPHA6	285220	broad.mit.edu	37	3	97454904	97454904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:97454904C>T	uc010how.1	+	16	3113	c.3070C>T	c.(3070-3072)CTT>TTT	p.L1024F	EPHA6_uc003drt.2_Missense_Mutation_p.L416F|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	929	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGTCAGCTTCCTTGACAAACT	0.463													5	11					0	0	0.00116845	0	0
OR5K1	26339	broad.mit.edu	37	3	98189267	98189267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:98189267C>T	uc003dsm.2	+	1	847	c.847C>T	c.(847-849)CCC>TCC	p.P283S		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						AATAGTAGTTCCCTTACTAAA	0.308													15	19					0	0	0.00074312	0	0
FILIP1L	11259	broad.mit.edu	37	3	99568538	99568538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:99568538C>T	uc003dtm.2	-	5	2445	c.1982G>A	c.(1981-1983)CGA>CAA	p.R661Q	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.R661Q|FILIP1L_uc010hpf.2_Missense_Mutation_p.R237Q|FILIP1L_uc010hpg.2_Missense_Mutation_p.R421Q|FILIP1L_uc003dtn.2_Missense_Mutation_p.R421Q|FILIP1L_uc003dtp.1_Missense_Mutation_p.R421Q	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	661	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						AGCATACCTTCGTTCTAGAGT	0.373													40	90					0	0	0.00222228	0	0
ZPLD1	131368	broad.mit.edu	37	3	102196369	102196369	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:102196369C>T	uc003dvs.1	+	18	2037	c.1155C>T	c.(1153-1155)AGC>AGT	p.S385S	ZPLD1_uc003dvt.1_Silent_p.S401S|ZPLD1_uc011bhg.1_Silent_p.S385S	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	385	Helical; (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GAGTTACGAGCTTTTCTCTTC	0.468													44	73					0	0	0.000781405	0	0
MORC1	27136	broad.mit.edu	37	3	108682428	108682428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:108682428C>T	uc003dxl.2	-	27	2719	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	MORC1_uc011bhn.1_Missense_Mutation_p.E857K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	878					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATTTTTTTTTCATATTGGACC	0.279													10	30					0	0	0.00185496	0	0
CCDC80	151887	broad.mit.edu	37	3	112358629	112358629	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:112358629A>T	uc003dzf.2	-	2	342	c.124T>A	c.(124-126)TCT>ACT	p.S42T	CCDC80_uc011bhv.1_Missense_Mutation_p.S42T|CCDC80_uc003dzg.2_Missense_Mutation_p.S42T|CCDC80_uc003dzh.1_Missense_Mutation_p.S42T	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	42										ovary(2)	2						CTGTCCGGAGAAACCAAAGGC	0.557													23	40					0	0	0.00229938	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113652386	113652386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:113652386G>A	uc003eaq.3	+	12	1314	c.1238G>A	c.(1237-1239)CGA>CAA	p.R413Q	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.R246Q|GRAMD1C_uc003eas.2_Missense_Mutation_p.R208Q|GRAMD1C_uc003eat.2_Missense_Mutation_p.R72Q	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	413						integral to membrane				ovary(2)|skin(1)	3						CGGGAAGCACGATTTTATTTG	0.343													34	52					0	0	0.00148497	0	0
PLA1A	51365	broad.mit.edu	37	3	119336910	119336910	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:119336910T>C	uc003ecu.2	+	7	838	c.799T>C	c.(799-801)TAC>CAC	p.Y267H	PLA1A_uc003ecv.2_Missense_Mutation_p.Y251H|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Missense_Mutation_p.Y94H	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	267					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TGTGCACCTCTACATCAGCGC	0.473													69	121					0	0	0.000781405	0	0
RABL3	285282	broad.mit.edu	37	3	120424951	120424951	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:120424951G>A	uc003edx.2	-	4	309	c.279C>T	c.(277-279)TTC>TTT	p.F93F		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	93	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		AGTCGTGTACGAAAATAATAC	0.378													22	33					0	0	0.00188189	0	0
CASR	846	broad.mit.edu	37	3	122003187	122003187	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:122003187A>T	uc003eev.3	+	7	2758	c.2386A>T	c.(2386-2388)AAG>TAG	p.K796*	CASR_uc003eew.3_Nonsense_Mutation_p.K806*	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	796	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CAAGTCCCGGAAGCTGCCGGA	0.552													11	30					0	0	0.000978159	0	0
CASR	846	broad.mit.edu	37	3	122003521	122003521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:122003521G>A	uc003eev.3	+	7	3092	c.2720G>A	c.(2719-2721)GGA>GAA	p.G907E	CASR_uc003eew.3_Missense_Mutation_p.G917E	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	907	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGCTCCACGGGATCCACCCCC	0.667													9	14					0	0	0.000442599	0	0
KALRN	8997	broad.mit.edu	37	3	124153173	124153173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:124153173C>T	uc003ehg.2	+	17	2970	c.2843C>T	c.(2842-2844)TCC>TTC	p.S948F	KALRN_uc010hrv.1_Intron|KALRN_uc003ehf.1_Missense_Mutation_p.S948F|KALRN_uc011bjy.1_Intron|KALRN_uc003ehh.1_Missense_Mutation_p.S294F	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	948	Spectrin 4.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CATGCCACTTCCTTGCAGAAG	0.607													17	16					0	0	0.00188189	0	0
PLXND1	23129	broad.mit.edu	37	3	129278531	129278531	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:129278531G>A	uc003emx.2	-	32	5329	c.5229C>T	c.(5227-5229)TTC>TTT	p.F1743F	PLXND1_uc003emw.2_5'Flank|PLXND1_uc011blb.1_Silent_p.F411F	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1743	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						GCTCCTCCAGGAAGTCGAAAA	0.572													44	46					0	0	0.000781405	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133654723	133654723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:133654723G>A	uc003eqa.3	-	13	1983	c.1709C>T	c.(1708-1710)GCC>GTC	p.A570V	SLCO2A1_uc003eqb.3_Missense_Mutation_p.A494V	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	570	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GCCATAGAGGGCTGGAGATGG	0.622													4	8					0	0	0.00024832	0	0
PRR23A	729627	broad.mit.edu	37	3	138724463	138724463	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:138724463G>A	uc011bms.1	-	1	648	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	216	Pro-rich.										0						ATTCCGGGTCGAAGAAGGGGC	0.662													6	11					0	0	0.000157383	0	0
ATR	545	broad.mit.edu	37	3	142281766	142281767	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:142281766_142281767GG>AA	uc003eux.3	-	4	599_600	c.477_478CC>TT	c.(475-480)CTCCAT>CTTTAT	p.H160Y		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	160					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TTTCTTCTATGGAGGTAAACCA	0.361								Other_conserved_DNA_damage_response_genes					42	72					0	0	6.4e-05	0	0
HLTF	6596	broad.mit.edu	37	3	148792076	148792076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:148792076C>T	uc003ewq.1	-	4	673	c.455G>A	c.(454-456)GGA>GAA	p.G152E	HLTF_uc003ewr.1_Missense_Mutation_p.G152E|HLTF_uc003ews.1_Missense_Mutation_p.G152E|HLTF_uc010hve.1_Missense_Mutation_p.G152E	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	152					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TTCTTCTTTTCCCCAAAAAGT	0.353													31	45					0	0	0.00209593	0	0
FAM194A	131831	broad.mit.edu	37	3	150377804	150377804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:150377804C>T	uc003eyg.2	-	14	1924	c.1867G>A	c.(1867-1869)GAA>AAA	p.E623K	FAM194A_uc003eyh.2_Missense_Mutation_p.E477K	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	623										skin(2)|ovary(1)	3						TTTAATTTTTCCCAAACCTGG	0.383													37	58					0	0	0.00111076	0	0
RSRC1	51319	broad.mit.edu	37	3	158261214	158261214	+	Missense_Mutation	SNP	G	A	A	rs144776555		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:158261214G>A	uc003fbt.2	+	9	961	c.850G>A	c.(850-852)GAT>AAT	p.D284N	RSRC1_uc003fbv.2_Missense_Mutation_p.D226N	NM_016625	NP_057709	Q96IZ7	RSRC1_HUMAN	arginine/serine-rich coiled-coil 1	284					nucleocytoplasmic transport	cytoplasm|nuclear speck	protein binding				0			Lung(72;0.00416)|LUSC - Lung squamous cell carcinoma(72;0.00575)			AAAAGAAATAGATCCTACCAG	0.418													32	32					0	0	0.0024448	0	0
IQCJ	654502	broad.mit.edu	37	3	158983150	158983150	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:158983150G>A	uc003fcp.1	+	5	543	c.438G>A	c.(436-438)AAG>AAA	p.K146K	SCHIP1_uc003fcq.1_Intron|SCHIP1_uc003fcr.1_Intron|IQCJ_uc010hvy.1_Silent_p.K119K	NM_001042705	NP_001036170	Q1A5X6	IQCJ_HUMAN	IQ motif containing J isoform CaMBPv1	146											0			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			ATACTCTCAAGGAGCCCCAGA	0.507													20	22					0	0	0.00229938	0	0
SCHIP1	29970	broad.mit.edu	37	3	159605541	159605541	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:159605541G>A	uc003fcs.1	+	5	1107	c.1041G>A	c.(1039-1041)GAG>GAA	p.E347E	SCHIP1_uc003fcq.1_Silent_p.E423E|SCHIP1_uc003fcr.1_Silent_p.E336E|SCHIP1_uc003fct.1_Silent_p.E334E|SCHIP1_uc010hvz.1_Silent_p.E307E|SCHIP1_uc003fcu.1_Silent_p.E104E|SCHIP1_uc003fcv.1_Silent_p.E120E	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	347						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			CTACTGAAGAGGAGTCTGAAT	0.468													89	114					0	0	0.000781405	0	0
IL12A	3592	broad.mit.edu	37	3	159708099	159708099	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:159708099G>A	uc003fcx.2	+	2	479	c.264G>A	c.(262-264)AAG>AAA	p.K88K	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	54					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TGCTCCAGAAGGTGAGCCTTT	0.587													20	21					0	0	0.00047179	0	0
OTOL1	131149	broad.mit.edu	37	3	161214704	161214704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:161214704G>A	uc011bpb.1	+	1	109	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	37						collagen					0						GAAATCTGAGGAAAGAGAGAT	0.413													6	18					0	0	0.00116845	0	0
ZBBX	79740	broad.mit.edu	37	3	167023676	167023676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:167023676C>T	uc003fep.2	-	17	1803	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	ZBBX_uc011bpc.1_Missense_Mutation_p.E494K|ZBBX_uc003feq.2_Missense_Mutation_p.E465K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	494						intracellular	zinc ion binding			ovary(2)	2						TCAATTTTTTCAATGTCAGAA	0.318													12	11					0	0	0.000308642	0	0
MECOM	2122	broad.mit.edu	37	3	168806893	168806893	+	Silent	SNP	C	T	T	rs66665001		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:168806893C>T	uc003ffi.3	-	15	3185	c.2916G>A	c.(2914-2916)AGG>AGA	p.R972R	MECOM_uc010hwk.1_Silent_p.R986R|MECOM_uc003ffj.3_Silent_p.R1037R|MECOM_uc011bpi.1_Silent_p.R964R|MECOM_uc003ffn.3_Silent_p.R972R|MECOM_uc003ffk.2_Silent_p.R963R|MECOM_uc003ffl.2_Silent_p.R1123R|MECOM_uc011bpj.1_Silent_p.R1160R|MECOM_uc011bpk.1_Silent_p.R962R	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	972					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CTTCCATTTTCCTCATTTTGA	0.373													17	28					0	0	0.00152264	0	0
MECOM	2122	broad.mit.edu	37	3	168838981	168838981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:168838981C>T	uc003ffi.3	-	6	700	c.431G>A	c.(430-432)AGC>AAC	p.S144N	MECOM_uc010hwk.1_Missense_Mutation_p.S167N|MECOM_uc003ffj.3_Missense_Mutation_p.S209N|MECOM_uc011bpi.1_Missense_Mutation_p.S145N|MECOM_uc003ffn.3_Missense_Mutation_p.S144N|MECOM_uc003ffk.2_Missense_Mutation_p.S144N|MECOM_uc003ffl.2_Missense_Mutation_p.S304N|MECOM_uc011bpj.1_Missense_Mutation_p.S332N|MECOM_uc011bpk.1_Missense_Mutation_p.S134N|MECOM_uc010hwn.2_Missense_Mutation_p.S332N	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	144	Interaction with MAPK9, SMAD3 and probably SUV39H1.|C2H2-type 4.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CTGAAGGTTGCTAGGGTCCGT	0.502													10	17					0	0	0.000442599	0	0
CLDN11	5010	broad.mit.edu	37	3	170150514	170150514	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:170150514C>T	uc003fgx.2	+	3	796	c.594C>T	c.(592-594)TCC>TCT	p.S198S	CLDN11_uc011bpt.1_Intron|CLDN11_uc003fgy.2_Silent_p.S114S	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	198	Cytoplasmic (Potential).			RFYYTAGSSSPTHAKSAHV -> VSTTLRALAPRLMRRVPT YKRAARLPTEVL (in Ref. 1; AAC25187).	calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GCTCTAGCTCCCCGACTCATG	0.612													28	42					0	0	0.001512	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198506	170198506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:170198506G>A	uc003fgz.2	-	7	1881	c.1565C>T	c.(1564-1566)GCT>GTT	p.A522V	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	522						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			GGATTCATCAGCTTCTATGCC	0.458													67	114					0	0	0.000781405	0	0
PLD1	5337	broad.mit.edu	37	3	171395396	171395396	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:171395396G>A	uc003fhs.2	-	17	2072	c.1956C>T	c.(1954-1956)TTC>TTT	p.F652F	PLD1_uc003fht.2_Silent_p.F614F|PLD1_uc003fhu.3_5'Flank|PLD1_uc003fhv.1_5'UTR	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	652	Catalytic.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CTTTGAAGACGAAATTGCAGT	0.448													29	45					0	0	0.00209593	0	0
NAALADL2	254827	broad.mit.edu	37	3	174974280	174974280	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:174974280C>T	uc003fit.2	+	4	987	c.900C>T	c.(898-900)ATC>ATT	p.I300I	NAALADL2_uc003fiu.1_Silent_p.I293I|NAALADL2_uc010hwy.1_Silent_p.I122I|NAALADL2_uc010hwz.1_5'UTR	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	300	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CAAATCAGATCGCACTCCTGA	0.353													26	58					0	0	0.00127121	0	0
FXR1	8087	broad.mit.edu	37	3	180685959	180685959	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:180685959G>T	uc003fkq.2	+	14	1341	c.1319G>T	c.(1318-1320)AGA>ATA	p.R440I	FXR1_uc003fkp.2_Missense_Mutation_p.R355I|FXR1_uc003fkr.2_Missense_Mutation_p.R440I|FXR1_uc011bqj.1_Missense_Mutation_p.R354I|FXR1_uc003fks.2_Missense_Mutation_p.R383I|FXR1_uc011bqk.1_Missense_Mutation_p.R391I|FXR1_uc011bql.1_Missense_Mutation_p.R427I	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	440					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			GACAGCAGGAGACGCCCAGGA	0.532													13	35					3.27435e-08	1.34848e-07	0.00244969	1	0
YEATS2	55689	broad.mit.edu	37	3	183515738	183515738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:183515738C>T	uc003fly.2	+	22	3320	c.3125C>T	c.(3124-3126)TCC>TTC	p.S1042F		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	1042					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TCCAGTCAGTCCAGTCCGCAG	0.498													13	24					0	0	0.00185496	0	0
AP2M1	1173	broad.mit.edu	37	3	183899730	183899730	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:183899730C>T	uc011bqx.1	+	9	1015	c.858C>T	c.(856-858)CCC>CCT	p.P286P	AP2M1_uc003fmw.2_Silent_p.P284P|AP2M1_uc003fmx.2_Silent_p.P214P|AP2M1_uc003fmy.2_Silent_p.P284P|AP2M1_uc011bqy.1_Silent_p.P156P|AP2M1_uc011bqz.1_Silent_p.P102P	NM_004068	NP_004059	Q96CW1	AP2M1_HUMAN	adaptor-related protein complex 2, mu 1 subunit	286	MHD.				axon guidance|cellular membrane organization|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|clathrin coat of coated pit|cytosol|endocytic vesicle membrane|peroxisomal membrane	lipid binding|protein binding|transporter activity				0	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.92e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TCATCCTTCCCTTCCGGGTGA	0.537													12	20					0	0	0.00185496	0	0
BCL6	604	broad.mit.edu	37	3	187447572	187447572	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:187447572G>A	uc003frp.3	-	5	1078	c.621C>T	c.(619-621)CTC>CTT	p.L207L	BCL6_uc011bsf.1_Silent_p.L207L|BCL6_uc010hza.2_Silent_p.L105L|BCL6_uc003frq.1_Silent_p.L207L	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	207					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		CATCGGAGAAGAGGAGGCTGC	0.617			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								13	18					0	0	0.00136819	0	0
TPRG1	285386	broad.mit.edu	37	3	188925302	188925302	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:188925302G>A	uc003frv.1	+	7	1356	c.129G>A	c.(127-129)AGG>AGA	p.R43R	TPRG1_uc003frw.1_Silent_p.R43R	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	43											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		AGATTTCAAGGCAGTCAAGTG	0.473													20	39					0	0	0.00229938	0	0
ATP13A3	79572	broad.mit.edu	37	3	194134539	194134539	+	Silent	SNP	T	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:194134539T>A	uc003fty.3	-	31	3834	c.3432A>T	c.(3430-3432)GTA>GTT	p.V1144V	ATP13A3_uc003ftx.3_Silent_p.V23V	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	1144	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		TGAGCATAGTTACACGCCACT	0.348													94	127					0	0	0.000781405	0	0
PIGG	54872	broad.mit.edu	37	4	517605	517605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:517605C>T	uc003gak.3	+	9	2108	c.1972C>T	c.(1972-1974)CCG>TCG	p.P658S	PIGG_uc003gaj.3_Missense_Mutation_p.P650S|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.P525S|PIGG_uc003gal.3_Missense_Mutation_p.P569S	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	658					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						GCTGGCCAGTCCGTGGCTAAT	0.652													7	6					0	0	0.00198382	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6377625	6377625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:6377625C>T	uc003gjc.2	-	4	738	c.368G>A	c.(367-369)CGA>CAA	p.R123Q	PPP2R2C_uc003gjb.2_Missense_Mutation_p.R106Q|PPP2R2C_uc011bwd.1_Missense_Mutation_p.R116Q|PPP2R2C_uc011bwe.1_Missense_Mutation_p.R116Q|PPP2R2C_uc003gja.2_Missense_Mutation_p.R123Q|PPP2R2C_uc003gjd.1_Missense_Mutation_p.R211Q	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	123	WD 2.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						CCTTTTATCTCGTTCGGTAAT	0.443													49	61					0	0	0.000781405	0	0
SH3TC1	54436	broad.mit.edu	37	4	8242471	8242471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:8242471C>T	uc003gkv.3	+	18	3901	c.3800C>T	c.(3799-3801)GCC>GTC	p.A1267V	SH3TC1_uc003gkw.3_Missense_Mutation_p.A1191V|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	1267							binding			large_intestine(2)|pancreas(1)	3						CTGGCAGCCGCCGTGGACCTG	0.612													31	32					0	0	0.00209593	0	0
C4orf23	152992	broad.mit.edu	37	4	8477615	8477615	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:8477615T>C	uc003glg.1	+	11	1662	c.1474T>C	c.(1474-1476)TTC>CTC	p.F492L	C4orf23_uc003glh.1_Missense_Mutation_p.F329L|C4orf23_uc003gli.1_RNA	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	721					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						CCTCTGCTGGTTCTTCATGCA	0.617													57	77					0	0	0.000781405	0	0
CPZ	8532	broad.mit.edu	37	4	8603046	8603046	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:8603046C>T	uc003glm.2	+	3	444	c.318C>T	c.(316-318)GCC>GCT	p.A106A	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_5'UTR|CPZ_uc003glo.2_Silent_p.A95A|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	106	FZ.				proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						CTGTGCTGGCCCCCCGGTGTG	0.687													9	8					0	0	0.000274275	0	0
GBA3	57733	broad.mit.edu	37	4	22820518	22820518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:22820518G>A	uc003gqp.3	+	6	1473	c.1382G>A	c.(1381-1383)CGA>CAA	p.R461Q	GBA3_uc010iep.2_Missense_Mutation_p.R154Q|GBA3_uc011bxo.1_3'UTR	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	461					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						AAGATCATCCGAAACAATGGC	0.483													10	2					0	0	0.000978159	0	0
LGI2	55203	broad.mit.edu	37	4	25005339	25005339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:25005339C>T	uc003grf.2	-	8	1471	c.1372G>A	c.(1372-1374)GCT>ACT	p.A458T		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	458	EAR 6.					extracellular region					0		Breast(46;0.173)				GATGGAAGAGCTTGGATCTCC	0.512													44	65					0	0	0.000680045	0	0
PTTG2	10744	broad.mit.edu	37	4	37962083	37962083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:37962083G>A	uc011bye.1	+	1	28	c.28G>A	c.(28-30)GAA>AAA	p.E10K	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	10					chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						CGTTGATAAGGAAATTGGAGA	0.438													10	28					0	0	0.000673444	0	0
TLR1	7096	broad.mit.edu	37	4	38799295	38799295	+	Silent	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:38799295T>C	uc003gtl.2	-	4	1432	c.1158A>G	c.(1156-1158)GAA>GAG	p.E386E		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	386	Extracellular (Potential).|LRR 7.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TTTTTGAAAGTTCTTTTAATT	0.333													13	21					0	0	0.00136819	0	0
CWH43	80157	broad.mit.edu	37	4	49032922	49032922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:49032922G>A	uc003gyv.2	+	11	1635	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	CWH43_uc011bzl.1_Missense_Mutation_p.E458K	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	485					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GTGGCTAGGGGAAAAGTTGGG	0.418													40	68					0	0	0.0025221	0	0
KDR	3791	broad.mit.edu	37	4	55956205	55956205	+	Missense_Mutation	SNP	G	A	A	rs148668147		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:55956205G>A	uc003has.2	-	23	3412	c.3110C>T	c.(3109-3111)TCG>TTG	p.S1037L	KDR_uc003hat.1_Missense_Mutation_p.S1037L	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1037	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GTTCTTCTCCGATAAGAGGAT	0.423			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			23	42					0	0	0.000586117	0	0
KDR	3791	broad.mit.edu	37	4	55972108	55972108	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:55972108C>T	uc003has.2	-	12	1839	c.1537_splice	c.e12-1	p.T513_splice	KDR_uc003hat.1_Splice_Site_p.T513_splice|KDR_uc011bzx.1_Splice_Site_p.T513_splice	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor						angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TACTTACAGTCTGTGCGGGGA	0.502			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			26	44					0	0	0.000720815	0	0
UBA6	55236	broad.mit.edu	37	4	68543347	68543347	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:68543347G>A	uc003hdg.3	-	6	499	c.447C>T	c.(445-447)TCC>TCT	p.S149S	UBA6_uc003hdi.2_Silent_p.S149S|UBA6_uc003hdj.2_Silent_p.S149S	NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	149					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						TATCTAAAAAGGAGAGATCTG	0.313													19	30					0	0	0.000958276	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68725321	68725321	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:68725321C>T	uc003hdq.2	-	2	149	c.84G>A	c.(82-84)GTG>GTA	p.V28V	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_Intron	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	28	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CTGCCAGGATCACTACCCCTG	0.383													18	16					0	0	0.000958276	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68797744	68797744	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:68797744T>A	uc003hdr.1	-	4	417	c.296A>T	c.(295-297)AAA>ATA	p.K99I	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.K96I	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	99	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						GATATAATTTTTCTTCCAGGC	0.353													21	37					0	0	0.000720815	0	0
Unknown	0	broad.mit.edu	37	4	69343147	69343147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:69343147G>A	uc003hdz.3	+	8	832	c.768G>A	c.(766-768)ATG>ATA	p.M256I		NM_014058	NP_054777			transmembrane protease, serine 11E																		CTTCGAAAATGAAACGGGGTC	0.383													53	77					0	0	0.000781405	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519884	69519884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:69519884G>A	uc011cal.1	-	5	1222	c.1184C>T	c.(1183-1185)CCC>CTC	p.P395L		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	395					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CGCAAACAAGGGAATGCCCAC	0.463													16	74					0	0	0.00188189	0	0
SMR3B	10879	broad.mit.edu	37	4	71255434	71255434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:71255434C>T	uc011cas.1	+	3	190	c.109C>T	c.(109-111)CCT>TCT	p.P37S	SMR3B_uc003hfh.2_Missense_Mutation_p.P37S	NM_006685	NP_006676	P02814	SMR3B_HUMAN	submaxillary gland androgen regulated protein 3	37	Pro-rich.					extracellular space				skin(1)	1		all_hematologic(202;0.196)				ACCGCTGGCTCCTCCTCAACC	0.532													13	20					0	0	0.000422831	0	0
PPEF2	5470	broad.mit.edu	37	4	76793176	76793176	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:76793176G>A	uc003hix.2	-	13	2006	c.1649_splice	c.e13+1	p.R550_splice	PPEF2_uc003hiy.2_Splice_Site|PPEF2_uc003hiz.1_Splice_Site_p.R550_splice	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with						detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GAAAAGTCTTGCCTTTGCCTC	0.403													19	57					0	0	0.00229938	0	0
PPEF2	5470	broad.mit.edu	37	4	76804222	76804222	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:76804222C>G	uc003hix.2	-	10	1147	c.790G>C	c.(790-792)GGG>CGG	p.G264R	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.G264R	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	264	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ATTTCCTTCCCGTGTACCTGG	0.388													3	61					0	0	6.4e-05	0	0
CCDC158	339965	broad.mit.edu	37	4	77317607	77317607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:77317607G>A	uc003hkb.3	-	3	256	c.103C>T	c.(103-105)CGT>TGT	p.R35C	CCDC158_uc003hkd.2_Missense_Mutation_p.R35C	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	35										skin(3)|ovary(2)|pancreas(1)	6						ATTGTACCACGAATAGATGAC	0.249													28	44					0	0	0.00283554	0	0
FRAS1	80144	broad.mit.edu	37	4	79366741	79366741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:79366741G>A	uc003hlb.2	+	42	6171	c.5731G>A	c.(5731-5733)GAA>AAA	p.E1911K	FRAS1_uc003hkw.2_Missense_Mutation_p.E1911K|FRAS1_uc010ijj.1_Missense_Mutation_p.E331K	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1910	CSPG 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AGACGTCCTGGAAAACTACAT	0.398													32	61					0	0	0.00209593	0	0
FRAS1	80144	broad.mit.edu	37	4	79396646	79396646	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:79396646G>A	uc003hlb.2	+	54	8177	c.7737G>A	c.(7735-7737)GGG>GGA	p.G2579G		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2578	Calx-beta 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AGAGGACTGGGAACCTGAACC	0.547													22	40					0	0	0.00152264	0	0
FGF5	2250	broad.mit.edu	37	4	81207508	81207508	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:81207508G>A	uc003hmd.2	+	3	726	c.489G>A	c.(487-489)AGG>AGA	p.R163R	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	163					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						GCAAGTTCAGGGAGCGTTTTC	0.393													61	83					0	0	0.000781405	0	0
WDFY3	23001	broad.mit.edu	37	4	85731436	85731436	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:85731436C>A	uc003hpd.2	-	14	2357	c.1949G>T	c.(1948-1950)GGA>GTA	p.G650V	WDFY3_uc003hpf.2_Missense_Mutation_p.G650V	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	650						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GTACACAAATCCTCCAACTTT	0.418													9	14					1.12685e-05	4.63419e-05	0.000274275	1	0
C4orf36	132989	broad.mit.edu	37	4	87809342	87809342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:87809342G>A	uc003hqe.3	-	3	465	c.152C>T	c.(151-153)TCA>TTA	p.S51L		NM_144645	NP_653246	Q96KX1	CD036_HUMAN	hypothetical protein LOC132989	51											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00141)		ACCACCAAATGAAATTTCTTC	0.408													29	49					0	0	0.00127121	0	0
Unknown	0	broad.mit.edu	37	4	88813033	88813033	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:88813033G>A	uc010iko.1	+	1	39	c.39G>A	c.(37-39)GAG>GAA	p.E13E						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		AGGAGGTGGAGACTTTTGCCT	0.458													12	27					0	0	0.00244969	0	0
FAM13A	10144	broad.mit.edu	37	4	89688742	89688742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:89688742C>T	uc003hse.1	-	13	1748	c.1540G>A	c.(1540-1542)GGA>AGA	p.G514R	FAM13A_uc003hsb.1_Missense_Mutation_p.G188R|FAM13A_uc003hsd.1_Missense_Mutation_p.G188R|FAM13A_uc003hsc.1_Missense_Mutation_p.G174R|FAM13A_uc011cdq.1_Missense_Mutation_p.G160R|FAM13A_uc003hsf.1_Missense_Mutation_p.G100R|FAM13A_uc003hsg.1_5'UTR|FAM13A_uc010ikr.1_Missense_Mutation_p.G10R	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	514					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TTTTCATTTCCTTTCCTATAA	0.333													10	27					0	0	0.00136819	0	0
TMSL3	7117	broad.mit.edu	37	4	91760101	91760101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:91760101G>A	uc003hsy.2	-	1	169	c.88C>T	c.(88-90)CCT>TCT	p.P30S	FAM190A_uc003hsv.3_Intron|FAM190A_uc010ikv.2_Intron|FAM190A_uc003hsx.2_Intron	NM_183049	NP_898870			thymosin-like 3												0		all_cancers(2;6.48e-24)|all_epithelial(2;3.86e-25)|Colorectal(2;8.52e-12)|all_lung(2;3.73e-07)|Lung NSC(2;7.99e-07)|Renal(2;0.0243)|Hepatocellular(203;0.0411)		Epithelial(2;5.28e-11)|OV - Ovarian serous cystadenocarcinoma(123;8.9e-10)|all cancers(2;3.21e-09)|STAD - Stomach adenocarcinoma(1;0.0201)		TCTTTGGAAGGCAGTGGATTT	0.473													66	110					0	0	0.000781405	0	0
GRID2	2895	broad.mit.edu	37	4	94547532	94547532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:94547532G>A	uc011cdt.1	+	14	2564	c.2306G>A	c.(2305-2307)GGA>GAA	p.G769E	GRID2_uc011cdu.1_Missense_Mutation_p.G674E	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	769	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GCTGATCGGGGATATGGAATT	0.388													39	57					0	0	0.00222228	0	0
MTTP	4547	broad.mit.edu	37	4	100528101	100528101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:100528101C>T	uc003hvc.3	+	12	1797	c.1541C>T	c.(1540-1542)CCT>CTT	p.P514L	MTTP_uc011cej.1_Missense_Mutation_p.P541L	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	514	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TATGATCTCCCTTTCATAACT	0.433													14	16					0	0	0.00244969	0	0
MTTP	4547	broad.mit.edu	37	4	100532325	100532325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:100532325G>A	uc003hvc.3	+	14	2051	c.1795G>A	c.(1795-1797)GAA>AAA	p.E599K	MTTP_uc011cej.1_Missense_Mutation_p.E626K	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	599	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AGTTCTGAAGGAAATGGTCGC	0.398													37	32					0	0	0.00285205	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406484	106406484	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:106406484G>A	uc003hxt.1	+	1	622	c.492G>A	c.(490-492)AAG>AAA	p.K164K		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						CTTGGTTCAAGGGATGGAAAG	0.517													5	6					0	0	0.000602214	0	0
CFI	3426	broad.mit.edu	37	4	110662205	110662205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:110662205C>T	uc003hzr.3	-	13	1804	c.1596G>A	c.(1594-1596)ATG>ATA	p.M532I	CFI_uc003hzq.2_Missense_Mutation_p.M329I|CFI_uc011cft.1_Missense_Mutation_p.M540I|CFI_uc003hzs.3_Missense_Mutation_p.M525I	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	532	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TGTTGGCATCCATACAGACTA	0.443													64	113					0	0	0.000781405	0	0
ANK2	287	broad.mit.edu	37	4	114208794	114208794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:114208794G>A	uc003ibe.3	+	19	2213	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K	ANK2_uc003ibd.3_Missense_Mutation_p.E684K|ANK2_uc003ibf.3_Missense_Mutation_p.E705K|ANK2_uc003ibc.2_Missense_Mutation_p.E681K|ANK2_uc011cgb.1_Missense_Mutation_p.E720K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	705	ANK 21.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGCAGCCCAGGAAGATAAAGT	0.398													7	19					0	0	0.000157383	0	0
ANK2	287	broad.mit.edu	37	4	114277126	114277126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:114277126C>T	uc003ibe.3	+	38	7452	c.7352C>T	c.(7351-7353)ACC>ATC	p.T2451I	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.T2466I	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2418					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TCACACAAAACCCCTGATTCT	0.502													18	22					0	0	0.00074312	0	0
SEC24D	9871	broad.mit.edu	37	4	119727032	119727032	+	Silent	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:119727032G>T	uc003ici.3	-	7	1151	c.879C>A	c.(877-879)CCC>CCA	p.P293P	SEC24D_uc003icj.3_Silent_p.P294P|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	293	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TAGTGACCAGGGGAGGGATCT	0.393													6	84					0.00198382	0.00805091	0.00198382	1	0
PDE5A	8654	broad.mit.edu	37	4	120419758	120419758	+	Nonstop_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:120419758A>G	uc003idh.2	-	21	2781	c.2626T>C	c.(2626-2628)TGA>CGA	p.*876R	uc003ide.3_Intron|PDE5A_uc003idf.2_Nonstop_Mutation_p.*834R|PDE5A_uc003idg.2_Nonstop_Mutation_p.*824R	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	876					platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	TAGGCCACTCAGTTCCGCTTG	0.473													9	18					0	0	0.000673444	0	0
FAT4	79633	broad.mit.edu	37	4	126238442	126238442	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:126238442G>A	uc003ifj.3	+	1	876	c.876G>A	c.(874-876)GAG>GAA	p.E292E		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	292	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCAGGACGAGGGGACCCCCT	0.667											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	19					0	0	0.000566183	0	0
PGRMC2	10424	broad.mit.edu	37	4	129193638	129193638	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:129193638G>A	uc003igg.2	-	2	458	c.453C>T	c.(451-453)GCC>GCT	p.A151A		NM_006320	NP_006311			progesterone receptor membrane component 2												0						GTCCTCTGGAGGCATCCCTAC	0.358													9	22					0	0	0.000442599	0	0
FGA	2243	broad.mit.edu	37	4	155505343	155505343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:155505343G>A	uc003iod.1	-	6	2592	c.2534C>T	c.(2533-2535)TCC>TTC	p.S845F		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	845	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCCTCTAAAGGAAACCCAGAC	0.493													26	46					0	0	0.000878237	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156643314	156643314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:156643314G>A	uc003iov.2	+	10	2377	c.1841G>A	c.(1840-1842)CGA>CAA	p.R614Q	GUCY1A3_uc010iqc.2_Missense_Mutation_p.R614Q|GUCY1A3_uc003iow.2_Missense_Mutation_p.R614Q|GUCY1A3_uc010iqd.2_Missense_Mutation_p.R613Q|GUCY1A3_uc003iox.2_Missense_Mutation_p.R614Q|GUCY1A3_uc003ioz.2_Missense_Mutation_p.R379Q|GUCY1A3_uc003ioy.2_Missense_Mutation_p.R614Q|GUCY1A3_uc010iqe.2_Missense_Mutation_p.R379Q|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.R614Q	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	614					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AGTGTACCACGAAAAATCAAT	0.378													11	26					0	0	0.000978159	0	0
NPY5R	4889	broad.mit.edu	37	4	164272452	164272452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:164272452G>A	uc003iqn.2	+	4	1209	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	343	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				AAAACCTGAAGAAAATTCAGA	0.373													19	26					0	0	0.00074312	0	0
KIAA1712	80817	broad.mit.edu	37	4	175237393	175237393	+	Silent	SNP	T	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:175237393T>A	uc003itr.2	+	10	1452	c.1038T>A	c.(1036-1038)ACT>ACA	p.T346T	KIAA1712_uc010iro.2_Silent_p.T346T|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	346						centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		CAGATTCAACTCCCAGAGCCT	0.378													50	75					0	0	0.000781405	0	0
NEIL3	55247	broad.mit.edu	37	4	178257437	178257437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:178257437G>A	uc003iut.2	+	4	706	c.589G>A	c.(589-591)GAA>AAA	p.E197K	NEIL3_uc010irs.2_Missense_Mutation_p.E100K	NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	197					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		CATCAAAAATGAAGCTCTCTT	0.393								BER_DNA_glycosylases					47	59					0	0	0.000781405	0	0
RWDD4A	201965	broad.mit.edu	37	4	184572437	184572437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:184572437G>A	uc003ivt.1	-	3	375	c.149C>T	c.(148-150)TCC>TTC	p.S50F	RWDD4A_uc003ivu.1_RNA|RWDD4A_uc003ivv.1_5'UTR|RWDD4A_uc011ckl.1_Intron	NM_152682	NP_689895	Q6NW29	RWDD4_HUMAN	RWD domain containing 4A	50	RWD.										0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;7.35e-27)|Epithelial(43;1.49e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.76e-10)|GBM - Glioblastoma multiforme(59;5.54e-06)|Colorectal(24;7.92e-06)|STAD - Stomach adenocarcinoma(60;2.35e-05)|COAD - Colon adenocarcinoma(29;6.26e-05)|LUSC - Lung squamous cell carcinoma(40;0.00935)|READ - Rectum adenocarcinoma(43;0.166)		TTCTGTCCAGGAAATCTCTAT	0.358													37	79					0	0	0.000680045	0	0
C4orf41	60684	broad.mit.edu	37	4	184585175	184585175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:184585175C>T	uc003ivx.2	+	2	331	c.155C>T	c.(154-156)TCT>TTT	p.S52F	C4orf41_uc003ivw.2_Missense_Mutation_p.S52F|C4orf41_uc010isc.2_5'UTR	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	52											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		GTACCAATTTCTTTCAAGGTG	0.468													29	44					0	0	0.00209593	0	0
TLR3	7098	broad.mit.edu	37	4	187005261	187005261	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:187005261C>T	uc003iyq.2	+	4	2522	c.2421C>T	c.(2419-2421)ATC>ATT	p.I807I	TLR3_uc011ckz.1_Silent_p.I530I|TLR3_uc003iyr.2_Silent_p.I530I	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	807	Cytoplasmic (Potential).|TIR.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TTAACAGCATCAAAAGAAGCA	0.333													28	61					0	0	0.000878237	0	0
F11	2160	broad.mit.edu	37	4	187209625	187209625	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr4:187209625C>T	uc003iza.1	+	15	2068	c.1735C>T	c.(1735-1737)CTG>TTG	p.L579L	uc003izb.1_RNA	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	579	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GGGAGGCCCTCTGTCCTGCAA	0.547													56	72					0	0	0.000781405	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	154998	154998	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:154998C>T	uc003jak.2	+	6	983	c.933C>T	c.(931-933)GTC>GTT	p.V311V		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	311					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		AGTGTGAGGTCGTGAGCTCCC	0.557													24	36					0	0	0.000878237	0	0
TRIP13	9319	broad.mit.edu	37	5	896822	896822	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:896822C>T	uc003jbr.2	+	3	411	c.301C>T	c.(301-303)CAG>TAG	p.Q101*	TRIP13_uc010ite.1_Nonsense_Mutation_p.Q101*	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	101					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			TCACATTTTCCAGCTGAATGA	0.448													31	42					0	0	0.00058488	0	0
SLC6A18	348932	broad.mit.edu	37	5	1239618	1239618	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:1239618C>T	uc003jby.1	+	6	909	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	262	Helical; Name=6; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCCAGATATTCTTCTCTCTGT	0.577													38	68					0	0	0.00285205	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629337	9629337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:9629337G>A	uc003jem.1	-	1	1127	c.808C>T	c.(808-810)CCT>TCT	p.P270S		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	270	Helical; Name=7; (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TGTCCAGAAGGGTATATACCA	0.373													38	63					0	0	0.0025221	0	0
DNAH5	1767	broad.mit.edu	37	5	13769624	13769624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:13769624C>T	uc003jfd.2	-	57	9748	c.9706G>A	c.(9706-9708)GAT>AAT	p.D3236N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3236	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGCTTTATCGTTGGCCACT	0.418									Kartagener_syndrome				36	56					0	0	0.000953801	0	0
DNAH5	1767	broad.mit.edu	37	5	13793641	13793641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:13793641G>A	uc003jfd.2	-	49	8249	c.8207C>T	c.(8206-8208)TCT>TTT	p.S2736F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2736	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTGTCCACAGAAGCTTCAGA	0.483									Kartagener_syndrome				28	34					0	0	0.00209593	0	0
DNAH5	1767	broad.mit.edu	37	5	13830179	13830179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:13830179C>T	uc003jfd.2	-	37	6247	c.6205G>A	c.(6205-6207)GAT>AAT	p.D2069N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2069	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCACATTATCTCCATCAGTA	0.383									Kartagener_syndrome				22	32					0	0	0.000586117	0	0
DNAH5	1767	broad.mit.edu	37	5	13894774	13894774	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:13894774T>A	uc003jfd.2	-	16	2458	c.2416A>T	c.(2416-2418)ACT>TCT	p.T806S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	806	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTGCAAAAGTGTTTTCTAAA	0.388									Kartagener_syndrome				17	26					0	0	0.00152264	0	0
DNAH5	1767	broad.mit.edu	37	5	13901544	13901544	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:13901544G>A	uc003jfd.2	-	14	1911	c.1869C>T	c.(1867-1869)ATC>ATT	p.I623I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	623	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTTTCCAGCGATGGGAGGCT	0.502									Kartagener_syndrome				10	22					0	0	0.000442599	0	0
FBXL7	23194	broad.mit.edu	37	5	15928140	15928140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:15928140C>T	uc003jfn.1	+	3	750	c.269C>T	c.(268-270)TCC>TTC	p.S90F		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	90					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						ATGGTGCACTCCCCGCCCCCG	0.657													4	11					0	0	0.000602214	0	0
PRDM9	56979	broad.mit.edu	37	5	23518019	23518019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:23518019G>A	uc003jgo.2	+	5	513	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	111					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTTAAGAGTGGAACAGCGTAA	0.408										HNSCC(3;0.000094)			57	73					0	0	0.000781405	0	0
RAI14	26064	broad.mit.edu	37	5	34823975	34823975	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:34823975C>T	uc003jir.2	+	15	2224	c.2028C>T	c.(2026-2028)ATC>ATT	p.I676I	RAI14_uc010iur.2_Silent_p.I647I|RAI14_uc011coj.1_Silent_p.I676I|RAI14_uc003jis.2_Silent_p.I679I|RAI14_uc003jit.2_Silent_p.I676I|RAI14_uc011cok.1_Silent_p.I668I	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	676	Potential.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					CTGAATATATCCATAAAGCAG	0.448													23	37					0	0	0.000720815	0	0
SPEF2	79925	broad.mit.edu	37	5	35771755	35771755	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:35771755A>G	uc003jjo.2	+	27	3957	c.3846A>G	c.(3844-3846)GAA>GAG	p.E1282E	SPEF2_uc003jjp.1_Silent_p.E768E|SPEF2_uc003jjr.2_5'Flank	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1282					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAGAAAAAGAAAACCAGCCAG	0.398													13	13					0	0	0.00244969	0	0
IL7R	3575	broad.mit.edu	37	5	35876084	35876084	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:35876084G>A	uc003jjs.2	+	8	966	c.877_splice	c.e8-1	p.N293_splice	IL7R_uc011cop.1_Splice_Site	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor						immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TTTCTGTGCAGAATTTAAATG	0.413													18	27					0	0	0.00074312	0	0
C9	735	broad.mit.edu	37	5	39315879	39315879	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:39315879T>G	uc003jlv.3	-	6	957	c.868A>C	c.(868-870)AAG>CAG	p.K290Q		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	290	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			TGTCTTACCTTCTTTGAAGAA	0.313													6	12					0	0	0.00116845	0	0
GHR	2690	broad.mit.edu	37	5	42700087	42700087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:42700087G>A	uc003jmt.2	+	6	644	c.601G>A	c.(601-603)GAA>AAA	p.E201K	GHR_uc011cpq.1_Missense_Mutation_p.E14K	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	201	Extracellular (Potential).|Fibronectin type-III.				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AGAAGTAAATGAAACTAAATG	0.358													6	12					0	0	0.00198382	0	0
EMB	133418	broad.mit.edu	37	5	49699072	49699072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:49699072G>A	uc003jom.2	-	6	1066	c.817C>T	c.(817-819)CTT>TTT	p.L273F	EMB_uc010ivq.2_Missense_Mutation_p.L67F|EMB_uc003jol.2_Missense_Mutation_p.L204F|EMB_uc011cpy.1_Missense_Mutation_p.L223F|EMB_uc010ivr.2_Missense_Mutation_p.L219F	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	273	Helical; (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				GCCACTAAAAGAATCACCTCA	0.383													12	13					0	0	0.000422831	0	0
IL31RA	133396	broad.mit.edu	37	5	55212722	55212722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:55212722C>T	uc003jql.2	+	15	2134	c.2069C>T	c.(2068-2070)CCA>CTA	p.P690L	IL31RA_uc003jqm.2_Intron|IL31RA_uc003jqn.2_Intron|IL31RA_uc003jqo.2_Missense_Mutation_p.P548L	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	658	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GAGGAGCTCCCAGTTTCACCT	0.522													22	33					0	0	0.00229938	0	0
HTR1A	3350	broad.mit.edu	37	5	63256578	63256578	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:63256578C>T	uc011cqt.1	-	1	969	c.969G>A	c.(967-969)AGG>AGA	p.R323R		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	323	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCTCATTTTTCCTCTCGAAAG	0.607													20	36					0	0	0.00152264	0	0
F2RL1	2150	broad.mit.edu	37	5	76128570	76128571	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:76128570_76128571CC>AA	uc003keo.2	+	2	313_314	c.138_139CC>AA	c.(136-141)TCCCAC>TCAAAC	p.H47N		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	47	Extracellular (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		ATGGCACATCCCACGTCACTGG	0.416													11	400					0	0	6.4e-05	0	0
CMYA5	202333	broad.mit.edu	37	5	79029566	79029566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:79029566C>T	uc003kgc.2	+	2	5050	c.4978C>T	c.(4978-4980)CCC>TCC	p.P1660S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1660						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGCAAAGTCTCCCATAACTGA	0.413													12	18					0	0	0.00136819	0	0
MCTP1	79772	broad.mit.edu	37	5	94259726	94259726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:94259726C>T	uc003kkx.2	-	7	1213	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K	MCTP1_uc003kkv.2_Missense_Mutation_p.E184K|MCTP1_uc003kkw.2_Intron|MCTP1_uc003kkz.2_Missense_Mutation_p.E66K|MCTP1_uc003kku.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	405					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TCTGAAAGTTCCTAGAAACAA	0.264													23	33					0	0	0.00047179	0	0
LNPEP	4012	broad.mit.edu	37	5	96315499	96315499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:96315499C>T	uc003kmv.1	+	2	1191	c.677C>T	c.(676-678)TCA>TTA	p.S226L	LNPEP_uc003kmw.1_Missense_Mutation_p.S212L	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	226	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TCAGCAGTTTCAAGCCAAGAA	0.428													10	9					0	0	0.00185496	0	0
LNPEP	4012	broad.mit.edu	37	5	96315503	96315504	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:96315503_96315504CC>TT	uc003kmv.1	+	2	1195_1196	c.681_682CC>TT	c.(679-684)AGCCAA>AGTTAA	p.Q228*	LNPEP_uc003kmw.1_Nonsense_Mutation_p.Q214*	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	228	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		CAGTTTCAAGCCAAGAAAAACA	0.421													9	9					0	0	6.4e-05	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147758	100147758	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:100147758G>A	uc003knk.2	-	5	1201	c.873C>T	c.(871-873)TTC>TTT	p.F291F		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	291	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		TTTCATCACAGAATCTTGTGG	0.363													36	48					0	0	0.00111076	0	0
CAMK4	814	broad.mit.edu	37	5	110782473	110782473	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:110782473C>T	uc011cvj.1	+	7	648	c.549C>T	c.(547-549)ATC>ATT	p.I183I	CAMK4_uc003kpf.2_Silent_p.I183I|CAMK4_uc010jbv.2_5'UTR	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	183	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		CACTCAAAATCGGTGAGAACA	0.383													22	34					0	0	0.00047179	0	0
MCC	4163	broad.mit.edu	37	5	112720758	112720758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:112720758C>T	uc003kql.3	-	2	738	c.322G>A	c.(322-324)GAA>AAA	p.E108K	MCC_uc003kqk.3_RNA	NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:Variant_position_missing_in_P23508_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		AGATCTACTTCCTCCTTCCTA	0.453													33	62					0	0	0.00111076	0	0
YTHDC2	64848	broad.mit.edu	37	5	112920076	112920076	+	Missense_Mutation	SNP	G	A	A	rs149701893		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:112920076G>A	uc003kqn.2	+	26	3908	c.3725G>A	c.(3724-3726)CGA>CAA	p.R1242Q		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	1242							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		CATCCTAAACGAGGTACTGAG	0.448													28	35					0	0	0.000878237	0	0
DTWD2	285605	broad.mit.edu	37	5	118176690	118176690	+	Silent	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:118176690T>G	uc003ksa.2	-	6	853	c.819A>C	c.(817-819)GGA>GGC	p.G273G		NM_173666	NP_775937	Q8NBA8	DTWD2_HUMAN	DTW domain containing 2	273											0		all_epithelial(76;0.0982)|Prostate(80;0.121)		OV - Ovarian serous cystadenocarcinoma(64;0.000228)|Epithelial(69;0.000941)|all cancers(49;0.00939)		TAGGATATAATCCATTTTTCA	0.383													20	23					0	0	0.00121646	0	0
ZNF608	57507	broad.mit.edu	37	5	123983901	123983901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:123983901C>T	uc003ktq.1	-	4	2299	c.2176G>A	c.(2176-2178)GAC>AAC	p.D726N	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Missense_Mutation_p.D726N|ZNF608_uc003ktt.1_Missense_Mutation_p.D726N	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	726						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		AGGTTTTTGTCCGTTTTGCAG	0.473													21	24					0	0	0.00121646	0	0
HARS	3035	broad.mit.edu	37	5	140056669	140056670	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140056669_140056670CC>TT	uc003lgv.2	-	9	937_938	c.855_856GG>AA	c.(853-858)CAGGAT>CAAAAT	p.D286N	HARS_uc003lgu.2_Missense_Mutation_p.D217N|HARS_uc011czm.1_Missense_Mutation_p.D246N|HARS_uc003lgw.2_Missense_Mutation_p.D266N|HARS_uc011czn.1_Missense_Mutation_p.D226N|HARS_uc010jfu.2_Missense_Mutation_p.D286N|HARS_uc011czo.1_Missense_Mutation_p.D212N|HARS_uc011czp.1_Missense_Mutation_p.D172N|HARS_uc011czq.1_Missense_Mutation_p.D176N	NM_002109	NP_002100	P12081	SYHC_HUMAN	histidyl-tRNA synthetase	286					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	AGTTTAGGATCCTGGAGCAGCT	0.51													85	142					0	0	6.4e-05	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176162	140176163	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140176162_140176163GG>AA	uc003lhd.2	+	1	1719_1720	c.1613_1614GG>AA	c.(1612-1614)CGG>CAA	p.R538Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.R538Q|PCDHA2_uc011czy.1_Missense_Mutation_p.R538Q	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	538	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGAGCGCGCGGGATGCGGGCG	0.673													37	50					0	0	6.4e-05	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188067	140188067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140188067C>T	uc003lhi.2	+	1	1396	c.1295C>T	c.(1294-1296)TCG>TTG	p.S432L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S432L|PCDHA4_uc011daa.1_Missense_Mutation_p.S432L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	432	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGGGGGCTCGCCTTCGCTG	0.617													37	66					0	0	0.00128727	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188815	140188815	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140188815G>A	uc003lhi.2	+	1	2144	c.2043G>A	c.(2041-2043)CGG>CGA	p.R681R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.R681R|PCDHA4_uc011daa.1_Silent_p.R681R	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	681	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCCTCACGGGCGTTGGTGG	0.637													29	16					0	0	0.00127121	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209885	140209885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140209885C>T	uc003lho.2	+	1	2236	c.2209C>T	c.(2209-2211)CCC>TCC	p.P737S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.P737S	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	737	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGGACAAGCCCACGCTGGT	0.682													12	24					0	0	0.00136819	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248955	140248955	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140248955G>A	uc003lia.2	+	1	1125	c.267G>A	c.(265-267)CGG>CGA	p.R89R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.R89R	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	89	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAATTCTCGGATCGACCGCG	0.592													95	148					0	0	0.000781405	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348166	140348166	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140348166C>T	uc003lii.2	+	1	2055	c.1815C>T	c.(1813-1815)ACC>ACT	p.T605T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.T605T	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	605	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGGTCACCAAAGTCATAG	0.517													18	40					0	0	0.00152264	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432252	140432252	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140432252G>A	uc003lik.1	+	1	1274	c.1197G>A	c.(1195-1197)GGG>GGA	p.G399G		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	399	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTACATTTGGGAATTCTTACT	0.473													24	60					0	0	0.000586117	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476702	140476702	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140476702C>T	uc003lil.2	+	1	2466	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	PCDHB2_uc003lim.1_Silent_p.F437F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	776	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCAACTTCGTTGCTCAGG	0.507													35	49					0	0	0.000781405	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501624	140501624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140501624C>T	uc003lip.1	+	1	44	c.44C>T	c.(43-45)GCC>GTC	p.A15V		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	15					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAAGTGTTGGCCTTTATTTTG	0.498													23	41					0	0	0.000878237	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559641	140559641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140559641G>A	uc011dai.1	+	1	2212	c.2026G>A	c.(2026-2028)GAG>AAG	p.E676K	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	676	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGCTTCCGGAGGCTGCCCC	0.667													38	45					0	0	0.00148497	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711004	140711005	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140711004_140711005CC>TT	uc003lji.1	+	1	753_754	c.753_754CC>TT	c.(751-756)GTCCCC>GTTTCC	p.P252S	PCDHGA1_uc011dan.1_Missense_Mutation_p.P252S	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	252	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATATAAATGTCCCCGAAAACGT	0.485													22	35					0	0	6.4e-05	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731332	140731332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140731332C>T	uc003ljo.1	+	1	1505	c.1505C>T	c.(1504-1506)TCC>TTC	p.S502F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.S502F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	502	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTACGTGTCCGTGAGCCCG	0.662													14	30					0	0	0.000308642	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740020	140740020	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140740020C>T	uc003ljs.1	+	1	318	c.318C>T	c.(316-318)TTC>TTT	p.F106F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Silent_p.F106F	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	106	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGGATTTCGATACTGTCG	0.383													39	71					0	0	0.00148497	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740377	140740377	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140740377G>A	uc003ljs.1	+	1	675	c.675G>A	c.(673-675)ACG>ACA	p.T225T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Silent_p.T225T	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	225	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAGTGGCACGACCCAAATCC	0.542													45	31					0	0	0.000781405	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745801	140745801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140745801G>A	uc003lju.1	+	1	1904	c.1904G>A	c.(1903-1905)AGA>AAA	p.R635K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.R635K	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	635	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCTGGACAGAGACGCGCTC	0.672													45	52					0	0	0.000781405	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140746222	140746222	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140746222C>T	uc003lju.1	+	1	2325	c.2325C>T	c.(2323-2325)TAC>TAT	p.Y775Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.Y775Y	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	775	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCCAACTACGCAGACACGC	0.537													55	99					0	0	0.000781405	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754857	140754857	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140754857C>T	uc003ljy.1	+	1	1207	c.1207C>T	c.(1207-1209)CGA>TGA	p.R403*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Nonsense_Mutation_p.R403*	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	403	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATTATTATCGATTAGTGAC	0.458													28	53					0	0	0.001512	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140773672	140773672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140773672C>T	uc003lkd.1	+	1	2190	c.1292C>T	c.(1291-1293)CCT>CTT	p.P431L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.P431L	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	431	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAACACCACCTCTGTCCACT	0.428													11	18					0	0	0.00136819	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140793665	140793665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:140793665C>T	uc003lkl.1	+	1	923	c.923C>T	c.(922-924)TCA>TTA	p.S308L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.S308L	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	308	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATAAAAATATCAGAAAATCTA	0.343													7	18					0	0	0.000157383	0	0
FCHSD1	89848	broad.mit.edu	37	5	141028539	141028539	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:141028539C>T	uc003llk.2	-	7	612	c.561G>A	c.(559-561)CAG>CAA	p.Q187Q	FCHSD1_uc010jgg.2_5'Flank|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	187									FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTCAGTTTCTGGAGACTGG	0.423													48	60					0	0	0.000781405	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246220	145246220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:145246220C>T	uc003lns.1	-	2	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	136											0						CTCTCTTGTCCATTGGGGTTC	0.418													23	37					0	0	0.00278032	0	0
PPP2R2B	5521	broad.mit.edu	37	5	145969630	145969630	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:145969630G>A	uc003loe.2	-	9	1737	c.1212C>T	c.(1210-1212)ATC>ATT	p.I404I	PPP2R2B_uc010jgm.2_Silent_p.I393I|PPP2R2B_uc003log.3_Silent_p.I404I|PPP2R2B_uc003lof.3_Silent_p.I404I|PPP2R2B_uc003loi.3_Silent_p.I407I|PPP2R2B_uc003loh.3_Silent_p.I404I|PPP2R2B_uc003loj.3_Silent_p.I384I|PPP2R2B_uc003lok.3_Silent_p.I393I|PPP2R2B_uc011dbu.1_Silent_p.I410I|PPP2R2B_uc011dbv.1_Silent_p.I462I	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	404					apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGTCGACACTGATCTCGTCTT	0.473													56	67					0	0	0.000781405	0	0
PDGFRB	5159	broad.mit.edu	37	5	149509527	149509527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:149509527G>A	uc003lro.2	-	10	1841	c.1372C>T	c.(1372-1374)CCA>TCA	p.P458S	PDGFRB_uc010jhd.2_Missense_Mutation_p.P297S	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	458	Extracellular (Potential).|Ig-like C2-type 5.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	AGCTCACGTGGACACCTGCCA	0.617			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML						OREG0016927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	37					0	0	0.00229938	0	0
CDX1	1044	broad.mit.edu	37	5	149563195	149563195	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:149563195C>T	uc003lrq.2	+	3	846	c.750C>T	c.(748-750)CTC>CTT	p.L250L		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	250						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACACCAGCCTCCTGGCCACCT	0.682													6	13					0	0	0.000157383	0	0
TNIP1	10318	broad.mit.edu	37	5	150413312	150413312	+	Missense_Mutation	SNP	C	G	G	rs144751861		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:150413312C>G	uc003ltf.2	-	16	2225	c.1636G>C	c.(1636-1638)GGG>CGG	p.G546R	TNIP1_uc011dcn.1_Missense_Mutation_p.G64R|TNIP1_uc010jhl.2_Intron|TNIP1_uc010jhm.2_Intron|TNIP1_uc010jhn.2_Intron|TNIP1_uc011dco.1_Missense_Mutation_p.G546R|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Missense_Mutation_p.G546R|TNIP1_uc003ltg.2_Missense_Mutation_p.G493R|TNIP1_uc003ltj.2_Missense_Mutation_p.G546R|TNIP1_uc010jho.1_Intron|TNIP1_uc010jhq.1_Intron|TNIP1_uc010jhp.1_Intron|TNIP1_uc010jhr.1_Missense_Mutation_p.G546R|TNIP1_uc003ltk.2_Missense_Mutation_p.G546R	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	546	Pro-rich.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGTAGGCCCCGCAGAGATGT	0.632													5	70					0	0	0.000602214	0	0
GEMIN5	25929	broad.mit.edu	37	5	154316593	154316593	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:154316593G>C	uc003lvx.3	-	2	402	c.319C>G	c.(319-321)CTC>GTC	p.L107V	GEMIN5_uc011ddk.1_Missense_Mutation_p.L107V	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	107	WD 2.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACCTGATGGAGTGCATGTTCT	0.463													39	85					0	0	0.00195071	0	0
DOCK2	1794	broad.mit.edu	37	5	169186717	169186717	+	Silent	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:169186717T>C	uc003maf.2	+	24	2465	c.2385T>C	c.(2383-2385)GCT>GCC	p.A795A	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.A287A	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	795					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGTGGCGGCTTTGAAATACA	0.453													28	38					0	0	0.00178596	0	0
DOCK2	1794	broad.mit.edu	37	5	169508871	169508871	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:169508871C>T	uc003maf.2	+	51	5393	c.5313C>T	c.(5311-5313)ATC>ATT	p.I1771I	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.I1263I|DOCK2_uc003mah.2_Silent_p.I327I	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1771					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGCAGGCATCCCTGGGTTGG	0.602													14	26					0	0	0.000308642	0	0
UBTD2	92181	broad.mit.edu	37	5	171639158	171639158	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:171639158G>A	uc003mbp.1	-	3	507	c.381C>T	c.(379-381)ATC>ATT	p.I127I		NM_152277	NP_689490	Q8WUN7	UBTD2_HUMAN	dendritic cell-derived ubiquitin-like protein	127						cytoplasm					0	Renal(175;0.000159)|Lung NSC(126;0.00976)|all_lung(126;0.0156)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTATCATGTTGATTGGCGGTG	0.453													33	53					0	0	0.00058488	0	0
HRH2	3274	broad.mit.edu	37	5	175110262	175110262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:175110262C>T	uc003mdd.2	+	1	1799	c.26C>T	c.(25-27)TCC>TTC	p.S9F	HRH2_uc003mdc.3_Missense_Mutation_p.S9F	NM_022304	NP_071640	P25021	HRH2_HUMAN	histamine receptor H2 isoform 2	9	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|immune response	integral to plasma membrane	histamine receptor activity			ovary(1)	1	all_cancers(89;0.00805)|Renal(175;0.000269)|Lung NSC(126;0.00419)|all_lung(126;0.00711)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Colorectal(1;0.0154)|COAD - Colon adenocarcinoma(1;0.149)	Betazole(DB00272)|Cimetidine(DB00501)|Doxepin(DB01142)|Epinastine(DB00751)|Famotidine(DB00927)|Histamine Phosphate(DB00667)|Nizatidine(DB00585)|Ranitidine(DB00863)	ACAGCCTCTTCCTTTTGCCTG	0.572													61	106					0	0	0.000781405	0	0
C5orf25	375484	broad.mit.edu	37	5	175772292	175772292	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:175772292G>A	uc003mds.3	+	12	2870	c.2463G>A	c.(2461-2463)CAG>CAA	p.Q821Q	C5orf25_uc003mdt.3_Silent_p.Q406Q|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Silent_p.Q282Q			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	821											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TAGAGAAGCAGATTGAGGCCT	0.507													21	42					0	0	0.00152264	0	0
FAF2	23197	broad.mit.edu	37	5	175919263	175919263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:175919263C>T	uc003mej.3	+	5	466	c.413C>T	c.(412-414)TCA>TTA	p.S138L		NM_014613	NP_055428	Q96CS3	FAF2_HUMAN	UBX domain containing 8	138					response to unfolded protein	endoplasmic reticulum|lipid particle	protein binding			ovary(1)	1						GACATTGTTTCATTTATGCAC	0.488													29	42					0	0	0.001512	0	0
FGFR4	2264	broad.mit.edu	37	5	176522441	176522441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:176522441G>A	uc003mfl.2	+	12	1797	c.1630G>A	c.(1630-1632)GGG>AGG	p.G544R	FGFR4_uc003mfm.2_Missense_Mutation_p.G544R|FGFR4_uc011dfu.1_Missense_Mutation_p.G476R|FGFR4_uc003mfo.2_Missense_Mutation_p.G504R	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	544	Protein kinase.|Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	CACCCAGGAAGGTGGGGCCGA	0.637										TSP Lung(9;0.080)			22	30					0	0	0.00047179	0	0
C6orf201	404220	broad.mit.edu	37	6	4099236	4099236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:4099236G>A	uc003mwa.3	+	3	856	c.88G>A	c.(88-90)GAG>AAG	p.E30K	C6orf201_uc003mvz.3_RNA|C6orf201_uc011dhw.1_Missense_Mutation_p.E30K|C6orf201_uc003mwb.3_RNA	NM_001085401	NP_001078870	Q7Z4U5	CF201_HUMAN	hypothetical protein LOC404220	30											0	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				ATTACCAGGTGAGAATCCTGA	0.403													14	18					0	0	0.00244969	0	0
DSP	1832	broad.mit.edu	37	6	7580074	7580074	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:7580074G>A	uc003mxp.1	+	23	3930	c.3651G>A	c.(3649-3651)ACG>ACA	p.T1217T	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1217	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TTAACATTACGAAGACCACCA	0.368													21	33					0	0	0.00229938	0	0
DSP	1832	broad.mit.edu	37	6	7585335	7585335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:7585335G>A	uc003mxp.1	+	24	8119	c.7840G>A	c.(7840-7842)GAA>AAA	p.E2614K	DSP_uc003mxq.1_Missense_Mutation_p.E2015K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2614	Plectin 14.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGACACCCTGGAAGAATCGAG	0.463													26	50					0	0	0.00178596	0	0
TFAP2A	7020	broad.mit.edu	37	6	10410440	10410440	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:10410440G>A	uc003myr.2	-	2	426	c.174C>T	c.(172-174)TTC>TTT	p.F58F	TFAP2A_uc003myq.2_Silent_p.F52F|TFAP2A_uc003mys.2_Intron|TFAP2A_uc011dih.1_Silent_p.F58F|TFAP2A_uc003myt.2_Silent_p.F54F|TFAP2A_uc003myu.1_Silent_p.F58F|TFAP2A_uc003myv.1_Silent_p.F44F|TFAP2A_uc011dii.1_Silent_p.F54F|uc003myw.2_5'Flank	NM_003220	NP_003211	P05549	AP2A_HUMAN	transcription factor AP-2 alpha isoform a	58	WW-binding.|Gln/Pro-rich (transactivation domain).				ectoderm development|positive regulation of bone mineralization|positive regulation of tooth mineralization|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	centrosome|Golgi apparatus|nucleus	chromatin binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.107)				AGGGTGGGGGGAAGTATGGGG	0.662													20	14					0	0	0.00278032	0	0
ELOVL2	54898	broad.mit.edu	37	6	10995337	10995338	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:10995337_10995338CC>TT	uc003mzp.3	-	5	568_569	c.407_408GG>AA	c.(406-408)CGG>CAA	p.R136Q		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	136					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			TCGTTTTTTTCCGCAAAACGAA	0.376													34	61					0	0	6.4e-05	0	0
KIF13A	63971	broad.mit.edu	37	6	17817388	17817388	+	Silent	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:17817388C>G	uc003ncg.3	-	17	1968	c.1863G>C	c.(1861-1863)CGG>CGC	p.R621R	KIF13A_uc003ncf.2_Silent_p.R621R|KIF13A_uc003nch.3_Silent_p.R621R|KIF13A_uc003nci.3_Silent_p.R621R|KIF13A_uc003ncj.2_Silent_p.R297R	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	621	Potential.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			CATACATGAGCCGCTGCTCCT	0.567													31	51					0	0	0.00283554	0	0
DCDC2	51473	broad.mit.edu	37	6	24278405	24278405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:24278405G>A	uc003ndx.2	-	7	1096	c.794C>T	c.(793-795)TCC>TTC	p.S265F	DCDC2_uc003ndy.2_Missense_Mutation_p.S265F	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	265					cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				GTTGTCACTGGATCCAACTGT	0.363													21	30					0	0	0.00047179	0	0
KIAA0319	9856	broad.mit.edu	37	6	24576703	24576704	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:24576703_24576704GG>TT	uc011djo.1	-	10	1863_1864	c.1626_1627CC>AA	c.(1624-1629)CCCCAA>CCAAAA	p.Q543K	KIAA0319_uc011djp.1_Missense_Mutation_p.Q498K|KIAA0319_uc003neh.1_Missense_Mutation_p.Q543K|KIAA0319_uc011djq.1_Missense_Mutation_p.Q534K|KIAA0319_uc011djr.1_Missense_Mutation_p.Q543K|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	543	PKD 3.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						ATGGAGTTTTGGGGCAAAGTTA	0.495													12	293					0	0	6.4e-05	0	0
ZNF311	282890	broad.mit.edu	37	6	28962847	28962847	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:28962847C>T	uc003nlu.2	-	7	2445	c.1932G>A	c.(1930-1932)GGG>GGA	p.G644G	ZNF311_uc011dlk.1_Silent_p.G552G|ZNF311_uc003nlv.2_Silent_p.G552G	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	644					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						ATTTCCTACTCCCATCAAGTT	0.383													16	20					0	0	0.00074312	0	0
OR2H1	26716	broad.mit.edu	37	6	29430318	29430318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:29430318C>T	uc003nmi.2	+	3	1215	c.772C>T	c.(772-774)CTC>TTC	p.L258F	OR2H1_uc003nmj.1_Missense_Mutation_p.L258F|OR2H1_uc010jri.1_Missense_Mutation_p.L180F	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCTGTCTACCTCCAGCCCAA	0.527													32	48					0	0	0.00058488	0	0
HLA-A	3105	broad.mit.edu	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	G	G	rs41559716		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:29910693A>G	uc003nol.2	+	2	233	c.233A>G	c.(232-234)CAG>CGG	p.Q78R	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Missense_Mutation_p.Q78R|HLA-A_uc003noo.2_Missense_Mutation_p.Q78R|HLA-A_uc010jrr.2_Missense_Mutation_p.Q78R|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Missense_Mutation_p.Q50R|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	78	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGGATAGAGCAGGAGGGGCCG	0.657									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			3	9					0	0	6.4e-05	0	0
CDSN	1041	broad.mit.edu	37	6	31083847	31083847	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:31083847G>A	uc003nsm.1	-	2	1572	c.1545C>T	c.(1543-1545)GAC>GAT	p.D515D	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	515					cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AAACTTCAGGGTCAGCTAGCT	0.542													15	29					0	0	0.000308642	0	0
CFB	629	broad.mit.edu	37	6	31915831	31915831	+	Silent	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:31915831A>G	uc003nyj.3	+	6	1148	c.870A>G	c.(868-870)AAA>AAG	p.K290K	CFB_uc011dor.1_Silent_p.K792K|CFB_uc003nyi.2_Silent_p.K290K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	290	VWFA.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CAGGAGCCAAAAAGTGTCTAG	0.502													73	112					0	0	0.000781405	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928866	31928866	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:31928866C>A	uc003nyn.1	+	7	982	c.593C>A	c.(592-594)CCA>CAA	p.P198Q	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.P40Q|SKIV2L_uc011dov.1_Missense_Mutation_p.P5Q	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	198						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GACTTTGCACCAAAAGGTTAG	0.388													13	541					0.00244969	0.00992093	0.00244969	1	0
AGER	177	broad.mit.edu	37	6	32151127	32151127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:32151127C>T	uc003oal.1	-	4	418	c.394G>A	c.(394-396)GAA>AAA	p.E132K	AGER_uc003oak.1_5'Flank|AGER_uc003oar.2_Missense_Mutation_p.E31K|AGER_uc011dpm.1_Missense_Mutation_p.E31K|AGER_uc011dpn.1_Missense_Mutation_p.E31K|AGER_uc010jtv.1_Missense_Mutation_p.E132K|AGER_uc011dpo.1_Missense_Mutation_p.E45K|AGER_uc003oam.1_Intron|AGER_uc003oan.1_Missense_Mutation_p.E118K|AGER_uc003oap.1_Missense_Mutation_p.E132K|AGER_uc003oat.1_Missense_Mutation_p.E132K|AGER_uc003oao.1_RNA|AGER_uc003oaq.1_Missense_Mutation_p.E118K|AGER_uc010jtw.1_RNA|AGER_uc003oas.1_Missense_Mutation_p.E132K|AGER_uc003oau.1_Missense_Mutation_p.E132K|AGER_uc011dpp.1_Missense_Mutation_p.E132K|AGER_uc011dpq.1_Missense_Mutation_p.E132K|AGER_uc011dpr.1_Missense_Mutation_p.E132K	NM_001136	NP_001127	Q15109	RAGE_HUMAN	advanced glycosylation end product-specific	132	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|inflammatory response|innate immune response|neuron projection development|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	S100 alpha binding|transmembrane receptor activity			breast(1)	1						GCCGTGAGTTCAGAGGCAGAA	0.493													137	197					0	0	0.000781405	0	0
NOTCH4	4855	broad.mit.edu	37	6	32182001	32182001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:32182001C>T	uc003obb.2	-	13	2192	c.2053G>A	c.(2053-2055)GGG>AGG	p.G685R	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	685	EGF-like 17.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CACTCTGGCCCCGTCCAACCC	0.597													77	152					0	0	0.000781405	0	0
BTNL2	56244	broad.mit.edu	37	6	32364160	32364160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:32364160G>A	uc003obg.1	-	5	734	c.734C>T	c.(733-735)TCT>TTT	p.S245F	BTNL2_uc010jty.1_5'UTR|BTNL2_uc010jtz.1_RNA|BTNL2_uc010jua.1_Missense_Mutation_p.S35F	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	245	Extracellular (Potential).|Ig-like V-type 3.					integral to membrane				central_nervous_system(1)	1						CACTTTTAAAGAAGCTGTTAA	0.428													6	17					0	0	0.000157383	0	0
C6orf81	221481	broad.mit.edu	37	6	35704966	35704966	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:35704966G>A	uc003ola.2	+	1	108	c.81G>A	c.(79-81)GCG>GCA	p.A27A	LOC285847_uc010jvy.1_5'Flank|C6orf81_uc003olb.1_Silent_p.A27A	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	27							binding			ovary(1)	1						GCGCCGGGGCGATCTACCTGC	0.597											OREG0017379	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	18					0	0	0.000978159	0	0
SFRS3	6428	broad.mit.edu	37	6	36569554	36569554	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:36569554C>T	uc003omj.2	+	5	621	c.450C>T	c.(448-450)TCC>TCT	p.S150S	SFRS3_uc003omk.2_RNA	NM_003017	NP_003008	P84103	SRSF3_HUMAN	splicing factor, arginine/serine-rich 3	150	2 X approximate repeats, basic.|B-2.|Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CGTCCCGATCCTTCTCTAGGT	0.403			T	BCL6	follicular lymphoma								63	71					0	0	0.000781405	0	0
CPNE5	57699	broad.mit.edu	37	6	36714266	36714266	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:36714266G>A	uc003omr.1	-	16	1174	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	CPNE5_uc003omp.1_Silent_p.I77I|CPNE5_uc010jwn.1_Silent_p.I19I|CPNE5_uc003omq.1_Silent_p.I19I	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	369	VWFA.									skin(1)	1						AGTGCTGGATGATCTCTCCGA	0.617													27	28					0	0	0.001512	0	0
C6orf129	154467	broad.mit.edu	37	6	37451045	37451045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:37451045G>A	uc003ont.2	-	4	272	c.211C>T	c.(211-213)CGG>TGG	p.R71W		NM_138493	NP_612502	Q9P0B6	CF129_HUMAN	hypothetical protein LOC154467	71	Potential.					integral to membrane					0						TTCTCTTGCCGAAGAAACTTC	0.542													24	38					0	0	0.000720815	0	0
DNAH8	1769	broad.mit.edu	37	6	38843419	38843419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:38843419C>T	uc003ooe.1	+	51	7622	c.7022C>T	c.(7021-7023)TCC>TTC	p.S2341F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGCGGTGTTTCCTGTGTCGAA	0.333													20	37					0	0	0.00278032	0	0
KCNK17	89822	broad.mit.edu	37	6	39271779	39271779	+	Silent	SNP	G	A	A	rs140940240	byFrequency	TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:39271779G>A	uc003ooo.2	-	4	782	c.642C>T	c.(640-642)TTC>TTT	p.F214F	KCNK17_uc003oop.2_Silent_p.F214F	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	214						integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						TGATGAAGGCGAAGTAGAAGC	0.632													39	48					0	0	0.00170553	0	0
PRPH2	5961	broad.mit.edu	37	6	42666149	42666149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:42666149C>T	uc003osk.2	-	3	1211	c.925G>A	c.(925-927)GAG>AAG	p.E309K		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	309	Cytoplasmic (Potential).				cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			ACGCTCCTCTCCAGCAGCCAG	0.627													18	32					0	0	0.00229938	0	0
SLC22A7	10864	broad.mit.edu	37	6	43269945	43269945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:43269945G>A	uc003out.2	+	8	1168	c.1069G>A	c.(1069-1071)GTG>ATG	p.V357M	SLC22A7_uc010jyl.1_Missense_Mutation_p.V358M|SLC22A7_uc003ous.2_Missense_Mutation_p.V355M	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	357	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CAGGTTCGGAGTGAACTTCTC	0.552													29	36					0	0	0.000953801	0	0
CAPN11	11131	broad.mit.edu	37	6	44144023	44144023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:44144023C>T	uc003owt.1	+	9	987	c.949C>T	c.(949-951)CGG>TGG	p.R317W	CAPN11_uc011dvn.1_5'Flank	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	317	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AACACTGATTCGGGTCCGGAA	0.587													24	34					0	0	0.00209593	0	0
AARS2	57505	broad.mit.edu	37	6	44274084	44274084	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:44274084G>A	uc010jza.1	-	9	1236	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	411					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CCCGCTCCAGGGAGGCCAGGA	0.597													27	36					0	0	0.00127121	0	0
RCAN2	10231	broad.mit.edu	37	6	46216547	46216547	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:46216547G>A	uc003oyb.1	-	2	489	c.174C>T	c.(172-174)TTC>TTT	p.F58F	RCAN2_uc003oyc.1_Silent_p.F104F|RCAN2_uc003oyd.1_Silent_p.F104F	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	58					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						TAGGATTGCTGAAGTTTATAC	0.393													10	25					0	0	0.000442599	0	0
TDRD6	221400	broad.mit.edu	37	6	46659356	46659356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:46659356G>A	uc003oyj.2	+	1	3491	c.3491G>A	c.(3490-3492)AGA>AAA	p.R1164K	TDRD6_uc010jze.2_Missense_Mutation_p.R1158K	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1164					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TACAAAGATAGAATAAGAAAA	0.303													28	36					0	0	0.00209593	0	0
CRISP2	7180	broad.mit.edu	37	6	49667538	49667538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:49667538C>T	uc003ozq.2	-	6	506	c.250G>A	c.(250-252)GAT>AAT	p.D84N	CRISP2_uc003ozl.2_Missense_Mutation_p.D84N|CRISP2_uc003ozn.2_Missense_Mutation_p.D84N|CRISP2_uc003ozr.2_Missense_Mutation_p.D84N|CRISP2_uc003ozo.2_Missense_Mutation_p.D84N|CRISP2_uc003ozm.2_Missense_Mutation_p.D84N|CRISP2_uc003ozp.2_Missense_Mutation_p.D84N	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	84						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			tcctctgGATCACTATGTTGT	0.259													10	21					0	0	0.000442599	0	0
CRISP1	167	broad.mit.edu	37	6	49806193	49806193	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:49806193G>A	uc003ozw.2	-	7	658	c.579C>T	c.(577-579)GTC>GTT	p.V193V	CRISP1_uc003ozx.2_Intron	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	193					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					CTTCACATGGGACGCCTGTCT	0.363													23	59					0	0	0.000878237	0	0
PKHD1	5314	broad.mit.edu	37	6	51910917	51910917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:51910917G>A	uc003pah.1	-	24	2753	c.2477C>T	c.(2476-2478)TCC>TTC	p.S826F	PKHD1_uc003pai.2_Missense_Mutation_p.S826F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	826	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAGGTACCTGGATGTGAAGTC	0.458													26	34					0	0	0.00127121	0	0
ICK	22858	broad.mit.edu	37	6	52897349	52897349	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:52897349T>C	uc003pbh.2	-	5	750	c.260A>G	c.(259-261)TAC>TGC	p.Y87C	ICK_uc003pbi.2_Missense_Mutation_p.Y87C|ICK_uc003pbj.2_Missense_Mutation_p.Y87C	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	87	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					AATGAGCTGGTAAAGATTTTC	0.274													30	33					0	0	0.000692331	0	0
GCM1	8521	broad.mit.edu	37	6	52993656	52993656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:52993656C>T	uc003pbp.2	-	6	868	c.659G>A	c.(658-660)GGA>GAA	p.G220E		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	220						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					TATTAAATGTCCACTGTAACT	0.443													38	49					0	0	0.00148497	0	0
BAI3	577	broad.mit.edu	37	6	70037717	70037717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:70037717C>T	uc003pev.3	+	22	3419	c.2971C>T	c.(2971-2973)CCA>TCA	p.P991S	BAI3_uc010kak.2_Missense_Mutation_p.P991S|BAI3_uc011dxx.1_Missense_Mutation_p.P197S|BAI3_uc003pex.1_Missense_Mutation_p.P121S	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	991	Helical; Name=4; (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TGCAGGTTTACCAGCATTAGT	0.393													13	2					0	0	0.00185496	0	0
LCA5	167691	broad.mit.edu	37	6	80223146	80223146	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:80223146A>T	uc003pix.2	-	3	938	c.503T>A	c.(502-504)ATT>AAT	p.I168N	LCA5_uc003piy.2_Missense_Mutation_p.I168N|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.I168N	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	168	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		GAGTGCTGTAATCTCATTGTT	0.353													37	13					0	0	0.00111076	0	0
CYB5R4	51167	broad.mit.edu	37	6	84573933	84573933	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:84573933C>T	uc003pkf.2	+	2	247	c.115C>T	c.(115-117)CGA>TGA	p.R39*		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	39					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		GGATTGGATTCGACTGACCAA	0.328													29	14					0	0	0.00127121	0	0
HTR1E	3354	broad.mit.edu	37	6	87725508	87725508	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:87725508C>T	uc003pli.2	+	2	1159	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	152	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TCTCCATTTTCATCTCCATGC	0.552													26	11					0	0	0.00106085	0	0
MDN1	23195	broad.mit.edu	37	6	90409393	90409393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:90409393G>A	uc003pnn.1	-	58	9040	c.8924C>T	c.(8923-8925)TCA>TTA	p.S2975L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2975					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AAGACAAAATGAGATGAGGTG	0.413													35	11					0	0	0.000692331	0	0
EPHA7	2045	broad.mit.edu	37	6	93968003	93968003	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:93968003C>T	uc003poe.2	-	11	2166	c.1925_splice	c.e11-1	p.G642_splice	EPHA7_uc003pof.2_Splice_Site_p.G637_splice|EPHA7_uc011eac.1_Splice_Site_p.G638_splice	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor							integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCGAATTCTCCTGAAGTAACA	0.333													34	21					0	0	0.00195071	0	0
ENPP3	5169	broad.mit.edu	37	6	131973708	131973708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:131973708C>T	uc003qcu.3	+	5	651	c.304C>T	c.(304-306)CGT>TGT	p.R102C	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Missense_Mutation_p.R68C|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.R102C	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	102	Extracellular (Potential).|SMB 2.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		CAATAAATTTCGTTGTGGAGA	0.378													30	20					0	0	0.000692331	0	0
ENPP1	5167	broad.mit.edu	37	6	132168966	132168966	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:132168966G>A	uc011ecf.1	+	2	311	c.291G>A	c.(289-291)TTG>TTA	p.L97L		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	97	Helical; Signal-anchor for type II membrane protein; (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TATTTGGGTTGAAACCAAGCT	0.244													16	6					0	0	0.000958276	0	0
IFNGR1	3459	broad.mit.edu	37	6	137519694	137519694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:137519694G>A	uc003qho.2	-	7	1047	c.944C>T	c.(943-945)TCC>TTC	p.S315F	IFNGR1_uc011edm.1_Missense_Mutation_p.S287F	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	315	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	CTTTTCTAAGGAAAATGGCTG	0.423													8	6					0	0	0.000157383	0	0
PLAGL1	5325	broad.mit.edu	37	6	144269140	144269140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:144269140G>A	uc003qjv.2	-	2	1400	c.134C>T	c.(133-135)TCC>TTC	p.S45F	PLAGL1_uc003qjx.2_Missense_Mutation_p.S45F|PLAGL1_uc003qjy.2_Missense_Mutation_p.S45F|PLAGL1_uc010khl.2_Missense_Mutation_p.S45F|PLAGL1_uc010khm.2_Missense_Mutation_p.S45F|PLAGL1_uc003qjz.2_Missense_Mutation_p.S45F|PLAGL1_uc003qka.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkb.2_Intron|PLAGL1_uc003qkc.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkd.2_Intron|PLAGL1_uc003qke.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkf.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkg.2_Intron|PLAGL1_uc003qkh.2_Missense_Mutation_p.S45F|PLAGL1_uc003qki.2_Intron|PLAGL1_uc003qkj.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkk.2_Intron|PLAGL1_uc003qkl.2_Intron|PLAGL1_uc003qkm.2_Missense_Mutation_p.S45F|PLAGL1_uc010khn.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkn.2_Intron|PLAGL1_uc003qko.2_Missense_Mutation_p.S45F|PLAGL1_uc003qkp.2_Intron|PLAGL1_uc003qjw.2_Intron	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	45	C2H2-type 2.				cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		TTTATATCTGGAAACAAAGGC	0.478													113	53					0	0	0.000781405	0	0
GRM1	2911	broad.mit.edu	37	6	146351187	146351187	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:146351187C>T	uc010khw.1	+	2	1004	c.534C>T	c.(532-534)TTC>TTT	p.F178F	GRM1_uc010khu.1_Silent_p.F178F|GRM1_uc010khv.1_Silent_p.F178F|GRM1_uc003qll.2_Silent_p.F178F|GRM1_uc011edz.1_Silent_p.F178F|GRM1_uc011eea.1_Silent_p.F178F	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	178	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TCCAGCTCTTCGACATCCCCC	0.542													24	15					0	0	0.000586117	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151152181	151152182	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:151152181_151152182CC>TT	uc003qny.1	+	16	2246_2247	c.1934_1935CC>TT	c.(1933-1935)CCC>CTT	p.P645L	PLEKHG1_uc011eel.1_Missense_Mutation_p.P685L|PLEKHG1_uc011eem.1_Missense_Mutation_p.P704L|PLEKHG1_uc003qnz.2_Missense_Mutation_p.P645L	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	645					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		GAGATGACTCCCTTTGGGTCAT	0.46													6	2					0	0	6.4e-05	0	0
C6orf97	80129	broad.mit.edu	37	6	151894487	151894487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:151894487C>T	uc003qol.2	+	6	1042	c.953C>T	c.(952-954)ACC>ATC	p.T318I		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	318											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GCAGTCACAACCTCACAAAGC	0.507													29	15					0	0	0.000692331	0	0
SLC22A2	6582	broad.mit.edu	37	6	160664693	160664693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:160664693G>A	uc003qtf.2	-	7	1360	c.1190C>T	c.(1189-1191)ACC>ATC	p.T397I	SLC22A2_uc003qte.1_Missense_Mutation_p.T397I	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	397	Cytoplasmic (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GCGGTCGATGGTGAGGATGAT	0.522													31	21					0	0	0.00178596	0	0
SLC22A3	6581	broad.mit.edu	37	6	160868816	160868816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:160868816C>T	uc003qti.2	+	10	1603	c.1576C>T	c.(1576-1578)CCA>TCA	p.P526S	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	526						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		TATTGCCTTGCCAGAGACAGT	0.438													31	19					0	0	0.00148497	0	0
AGPAT4	56895	broad.mit.edu	37	6	161587366	161587366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr6:161587366C>T	uc003qtr.1	-	3	489	c.262G>A	c.(262-264)GAA>AAA	p.E88K	AGPAT4_uc003qts.1_Intron|AGPAT4_uc011egb.1_Intron|AGPAT4_uc003qtt.1_RNA|AGPAT4_uc011egc.1_Missense_Mutation_p.E88K|AGPAT4_uc011egd.1_Missense_Mutation_p.E26K|AGPAT4_uc011ege.1_Intron	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	88					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		ATGGCATTTTCCTTCCCATAC	0.537													20	9					0	0	0.00152264	0	0
SUN1	23353	broad.mit.edu	37	7	881721	881721	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:881721G>A	uc011jvp.1	+	4	484	c.405G>A	c.(403-405)TTG>TTA	p.L135L	SUN1_uc010ksa.1_Silent_p.L156L|SUN1_uc003sje.1_Silent_p.L135L|SUN1_uc003sjf.2_Silent_p.L85L|SUN1_uc011jvq.1_Silent_p.L135L|SUN1_uc003sjg.2_5'Flank	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	135	Nuclear.|LMNA-binding.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						CTCCTGTATTGGACGAGTCTT	0.572													20	33					0	0	0.00152264	0	0
FERD3L	222894	broad.mit.edu	37	7	19184901	19184901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:19184901G>A	uc003suo.1	-	1	144	c.85C>T	c.(85-87)CTC>TTC	p.L29F	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	29					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						TCGCAGAGGAGAGGGCGTCTC	0.632													11	25					0	0	0.00185496	0	0
MACC1	346389	broad.mit.edu	37	7	20199263	20199263	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:20199263C>G	uc003sus.3	-	5	1030	c.721G>C	c.(721-723)GTG>CTG	p.V241L	MACC1_uc010kug.2_Missense_Mutation_p.V241L	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	241					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						CCCACAGCCACATGACCTTGG	0.488													14	40					0	0	0.000422831	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23391197	23391198	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:23391197_23391198TC>GT	uc003swg.2	-	6	675_676	c.409_410GA>AC	c.(409-411)GAC>ACC	p.D137T		NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	137	RRM 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						ATTCAGTTTGTCTAGTGCTCTG	0.46													14	38					0	0	6.4e-05	0	0
PDE1C	5137	broad.mit.edu	37	7	31887694	31887694	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:31887694G>A	uc003tcm.1	-	9	1337	c.868C>T	c.(868-870)CTG>TTG	p.L290L	PDE1C_uc003tcn.1_Silent_p.L290L|PDE1C_uc003tco.1_Silent_p.L350L|PDE1C_uc003tcr.2_Silent_p.L290L|PDE1C_uc003tcs.2_Silent_p.L290L	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	290	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TCATTATACAGAATAGCTGGA	0.388													19	21					0	0	0.00152264	0	0
DPY19L1	23333	broad.mit.edu	37	7	35013200	35013200	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:35013200C>T	uc003tem.3	-	8	766	c.621G>A	c.(619-621)TGG>TGA	p.W207*		NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	207	Helical; (Potential).					integral to membrane					0						GAGGTGGTGTCCACATTACAC	0.313													10	14					0	0	0.00185496	0	0
C7orf69	80099	broad.mit.edu	37	7	47859110	47859110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:47859110C>T	uc003tnz.3	+	3	329	c.284C>T	c.(283-285)ACC>ATC	p.T95I	PKD1L1_uc003tny.1_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Intron	NM_025031	NP_079307	Q9H7B7	CG069_HUMAN	hypothetical protein LOC80099 precursor	95						extracellular region					0						CACAGCACCACCTACTGGCAC	0.418													23	35					0	0	0.000586117	0	0
IKZF1	10320	broad.mit.edu	37	7	50468178	50468178	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:50468178C>T	uc003tow.3	+	9	1581	c.1413C>T	c.(1411-1413)TTC>TTT	p.F471F	IKZF1_uc003tox.3_Silent_p.F429F|IKZF1_uc003toy.3_Silent_p.F429F|IKZF1_uc011kck.1_Silent_p.F384F|IKZF1_uc003toz.3_Silent_p.F441F|IKZF1_uc010kyx.2_Silent_p.F211F|IKZF1_uc003tpa.3_Silent_p.F213F	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	471	C2H2-type 5.|Required for binding PP1CC (By similarity).				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GGGTGCTCTTCCTGGATCACG	0.617			D		ALL								6	10					0	0	0.00198382	0	0
ZNF735	730291	broad.mit.edu	37	7	63674484	63674484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:63674484C>T	uc011kdn.1	+	3	260	c.260C>T	c.(259-261)CCA>CTA	p.P87L		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	87	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCAAACACCCAGGTAGGTGA	0.453													13	24					0	0	0.00185496	0	0
POM121	9883	broad.mit.edu	37	7	72412766	72412766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:72412766C>T	uc003twk.2	+	11	2234	c.2234C>T	c.(2233-2235)CCG>CTG	p.P745L	POM121_uc003twj.2_Missense_Mutation_p.P480L|POM121_uc010lam.1_Missense_Mutation_p.P480L	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	745	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				GGCCCCACACCGCCTGGCCCT	0.632													5	17					0	0	0.000978159	0	0
LIMK1	3984	broad.mit.edu	37	7	73513455	73513455	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:73513455G>A	uc003uaa.1	+	5	660	c.495G>A	c.(493-495)CTG>CTA	p.L165L	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Silent_p.L131L|LIMK1_uc003uac.1_5'UTR	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	165	PDZ.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				CCGTCACCCTGGTGTCCATCC	0.647													40	60					0	0	0.00285205	0	0
LIMK1	3984	broad.mit.edu	37	7	73513457	73513457	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:73513457T>G	uc003uaa.1	+	5	662	c.497T>G	c.(496-498)GTG>GGG	p.V166G	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Missense_Mutation_p.V132G|LIMK1_uc003uac.1_5'UTR	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	166	PDZ.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				GTCACCCTGGTGTCCATCCCA	0.647													40	59					0	0	0.00285205	0	0
HIP1	3092	broad.mit.edu	37	7	75183801	75183801	+	Missense_Mutation	SNP	G	A	A	rs141102143		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:75183801G>A	uc003uds.1	-	20	2029	c.1988C>T	c.(1987-1989)TCC>TTC	p.S663F	HIP1_uc011kfz.1_Missense_Mutation_p.S540F	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	663					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GCTGGAAATGGATGTGACCGT	0.512			T	PDGFRB	CMML								24	26					0	0	0.00127121	0	0
MAGI2	9863	broad.mit.edu	37	7	77708331	77708331	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:77708331G>A	uc003ugx.2	-	21	3893	c.3639C>T	c.(3637-3639)CTC>CTT	p.L1213L	MAGI2_uc003ugy.2_Silent_p.L1199L|MAGI2_uc010ldx.1_Silent_p.L806L	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1213	PDZ 6.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CAGATTTGATGAGTTCTATTG	0.443													55	90					0	0	0.000781405	0	0
PCLO	27445	broad.mit.edu	37	7	82544628	82544628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:82544628G>A	uc003uhx.2	-	7	12963	c.12674C>T	c.(12673-12675)TCA>TTA	p.S4225L	PCLO_uc003uhv.2_Missense_Mutation_p.S4225L|PCLO_uc010lec.2_Missense_Mutation_p.S1190L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4156					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACCAATAGATGAAGTGCTAGA	0.363													11	13					0	0	0.000978159	0	0
PCLO	27445	broad.mit.edu	37	7	82545358	82545358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:82545358G>A	uc003uhx.2	-	7	12233	c.11944C>T	c.(11944-11946)CGC>TGC	p.R3982C	PCLO_uc003uhv.2_Missense_Mutation_p.R3982C|PCLO_uc010lec.2_Missense_Mutation_p.R947C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3913					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTTGGTTGCGAATCACTTCA	0.388													62	78					0	0	0.000781405	0	0
PCLO	27445	broad.mit.edu	37	7	82764818	82764818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:82764818G>A	uc003uhx.2	-	3	2337	c.2048C>T	c.(2047-2049)TCC>TTC	p.S683F	PCLO_uc003uhv.2_Missense_Mutation_p.S683F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	629	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTCTTTGGGGAAGTCTGCTG	0.527													23	33					0	0	0.000586117	0	0
GRM3	2913	broad.mit.edu	37	7	86468384	86468384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:86468384G>A	uc003uid.2	+	4	2653	c.1554G>A	c.(1552-1554)ATG>ATA	p.M518I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.M390I|GRM3_uc010leh.2_Missense_Mutation_p.M110I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	518	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CCAATGAAATGAAGAATATGC	0.522													19	20					0	0	0.00121646	0	0
AKAP9	10142	broad.mit.edu	37	7	91712547	91712547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:91712547G>A	uc003ulg.2	+	33	8449	c.8224G>A	c.(8224-8226)GAG>AAG	p.E2742K	AKAP9_uc003ulf.2_Missense_Mutation_p.E2734K|AKAP9_uc003uli.2_Missense_Mutation_p.E2365K|AKAP9_uc003ulj.2_Missense_Mutation_p.E512K|AKAP9_uc003ulk.2_Missense_Mutation_p.E17K	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2754	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TCACCTCGCAGAGGCAAAAGA	0.378			T	BRAF	papillary thyroid								23	28					0	0	0.000720815	0	0
CYP3A7	1551	broad.mit.edu	37	7	99308459	99308459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:99308459C>T	uc003uru.2	-	10	1027	c.922G>A	c.(922-924)GAA>AAA	p.E308K	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	308					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CTCGTGGTTTCATAGCCAGCA	0.408													16	15					0	0	0.00074312	0	0
TAF6	6878	broad.mit.edu	37	7	99707825	99707825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:99707825C>T	uc003uti.2	-	11	1237	c.1156G>A	c.(1156-1158)GAT>AAT	p.D386N	AP4M1_uc003utd.2_3'UTR|TAF6_uc003utg.2_Missense_Mutation_p.D308N|TAF6_uc003uth.2_Missense_Mutation_p.D443N|TAF6_uc003utk.2_Missense_Mutation_p.D386N|TAF6_uc011kji.1_Missense_Mutation_p.D423N|TAF6_uc003utj.2_Missense_Mutation_p.D376N|TAF6_uc003utl.2_Missense_Mutation_p.D386N|TAF6_uc003utm.2_Missense_Mutation_p.D386N|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	386					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCCTAACATCGTGTCCCAGC	0.572													77	158					0	0	0.000781405	0	0
MUC17	140453	broad.mit.edu	37	7	100678106	100678106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:100678106G>A	uc003uxp.1	+	3	3462	c.3409G>A	c.(3409-3411)GAA>AAA	p.E1137K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1137	Extracellular (Potential).|59 X approximate tandem repeats.|17.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACTTCTACTGAAGCCAGTTC	0.532													110	177					0	0	0.000781405	0	0
MUC17	140453	broad.mit.edu	37	7	100691326	100691326	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:100691326G>A	uc003uxp.1	+	4	12518	c.12465G>A	c.(12463-12465)GGG>GGA	p.G4155G	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4155	Extracellular (Potential).|EGF-like.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTGGGATGGGCTCAAGTGCC	0.547													26	36					0	0	0.00127121	0	0
ARMC10	83787	broad.mit.edu	37	7	102716232	102716232	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:102716232G>T	uc003vaw.1	+	2	540	c.148G>T	c.(148-150)GAA>TAA	p.E50*	FBXL13_uc003vaq.2_5'Flank|FBXL13_uc010lir.1_5'Flank|FBXL13_uc003var.2_5'Flank|FBXL13_uc003vas.2_5'Flank|FBXL13_uc003vav.2_5'Flank|ARMC10_uc003vay.1_Nonsense_Mutation_p.E50*|ARMC10_uc003vax.1_Intron|ARMC10_uc003vbb.1_Intron|ARMC10_uc011kli.1_Intron|ARMC10_uc010lis.1_Intron|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_Intron	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	50					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			ovary(1)	1						AGGTGCCCTGGAAGAAGGGAC	0.607													9	11					2.17888e-05	8.94809e-05	0.000442599	1	0
RELN	5649	broad.mit.edu	37	7	103130325	103130325	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:103130325G>A	uc003vca.2	-	60	9787	c.9627C>T	c.(9625-9627)ATC>ATT	p.I3209I	RELN_uc010liz.2_Silent_p.I3209I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3209					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTCCCTTCTGGATCCAGCGGA	0.542													23	26					0	0	0.000878237	0	0
RELN	5649	broad.mit.edu	37	7	103294589	103294589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:103294589C>T	uc003vca.2	-	13	1665	c.1505G>A	c.(1504-1506)GGA>GAA	p.G502E	RELN_uc010liz.2_Missense_Mutation_p.G502E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	502					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTCTTTTCTTCCTTCAATTTT	0.398													9	26					0	0	0.000978159	0	0
DOCK4	9732	broad.mit.edu	37	7	111517237	111517237	+	Silent	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:111517237T>C	uc003vfx.2	-	17	1862	c.1593A>G	c.(1591-1593)GAA>GAG	p.E531E	DOCK4_uc003vfw.2_5'UTR|DOCK4_uc003vfy.2_Silent_p.E531E|DOCK4_uc003vga.1_Silent_p.E136E	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	531	DHR-1.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TTGTGTTTTCTTCACACTGTT	0.343													2	6					0	0	6.4e-05	0	0
CFTR	1080	broad.mit.edu	37	7	117174389	117174389	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:117174389C>T	uc003vjd.2	+	5	681	c.549C>T	c.(547-549)CTC>CTT	p.L183L	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	183	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTGTTAGTCTCCTTTCCAACA	0.303									Cystic_Fibrosis				16	30					0	0	0.000958276	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117365238	117365238	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:117365238T>C	uc003vjf.2	-	18	4221	c.4129A>G	c.(4129-4131)AAA>GAA	p.K1377E		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1377										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GGTTGTCTTTTCACAGAGGCT	0.502													76	127					0	0	0.000781405	0	0
GRM8	2918	broad.mit.edu	37	7	126173045	126173045	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:126173045G>A	uc003vlr.2	-	8	2702	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.F797F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	797	Helical; Name=6; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGATGGGGATGAAAGCTAACC	0.393										HNSCC(24;0.065)			15	22					0	0	0.000566183	0	0
CPA5	93979	broad.mit.edu	37	7	130008271	130008271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:130008271G>A	uc010lmd.1	+	14	1764	c.1144G>A	c.(1144-1146)GTC>ATC	p.V382I	CPA5_uc003vps.2_Missense_Mutation_p.V382I|CPA5_uc003vpt.2_Silent_p.P353P|CPA5_uc010lme.1_Missense_Mutation_p.V382I|CPA5_uc003vpu.1_Missense_Mutation_p.V382I|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	382					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					TGGGATCACCGTCGACTGGGC	0.557													36	75					0	0	0.00148497	0	0
PLXNA4	91584	broad.mit.edu	37	7	131830012	131830012	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:131830012C>T	uc003vra.3	-	29	5320	c.5091G>A	c.(5089-5091)GAG>GAA	p.E1697E	PLXNA4_uc003vqz.3_5'UTR	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1697	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGAAGATGGTCTCAAAGAGGT	0.522													11	26					0	0	0.00244969	0	0
PLXNA4	91584	broad.mit.edu	37	7	131883357	131883357	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:131883357C>T	uc003vra.3	-	13	2854	c.2625G>A	c.(2623-2625)AAG>AAA	p.K875K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	875	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGATAGTGACCTTGGTGCCCC	0.547													24	28					0	0	0.00178596	0	0
RAB19	401409	broad.mit.edu	37	7	140125885	140125885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:140125885C>T	uc010lni.2	+	4	787	c.589C>T	c.(589-591)CCC>TCC	p.P197S	RAB19_uc011krc.1_Missense_Mutation_p.P197S	NM_001008749	NP_001008749	A4D1S5	RAB19_HUMAN	RAB19, member RAS oncogene family	197					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0	Melanoma(164;0.0142)					GAACGGCCTCCCCCTGGACTC	0.557													22	40					0	0	0.000586117	0	0
MGAM	8972	broad.mit.edu	37	7	141730237	141730237	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:141730237T>C	uc003vwy.2	+	11	1351	c.1297T>C	c.(1297-1299)TTC>CTC	p.F433L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	433	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTTTAAAGGCTTCCCTGAATT	0.388													6	17					0	0	0.000157383	0	0
MGAM	8972	broad.mit.edu	37	7	141759659	141759659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:141759659C>T	uc003vwy.2	+	33	4006	c.3952C>T	c.(3952-3954)CCA>TCA	p.P1318S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1318	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATTTCAGGATCCAGCCATTTC	0.478													7	8					0	0	0.000274275	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919714	142919714	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:142919714G>A	uc011ksx.1	+	1	543	c.543G>A	c.(541-543)ACG>ACA	p.T181T		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	181	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity	p.T181T(1)		ovary(1)	1	Melanoma(164;0.059)					CCAACTCCACGGAGAAGAAGT	0.458													35	49					0	0	0.000953801	0	0
CLCN1	1180	broad.mit.edu	37	7	143013372	143013372	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:143013372C>T	uc003wcr.1	+	1	154	c.67C>T	c.(67-69)CAG>TAG	p.Q23*	CLCN1_uc011ktc.1_5'UTR	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	23	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CCCCCAGTACCAGTATATGCC	0.637													16	31					0	0	0.000308642	0	0
FAM131B	9715	broad.mit.edu	37	7	143054034	143054034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:143054034G>A	uc003wct.2	-	6	2314	c.608C>T	c.(607-609)GCC>GTC	p.A203V	FAM131B_uc010loz.2_Missense_Mutation_p.A171V|FAM131B_uc003wcu.3_Missense_Mutation_p.A203V|FAM131B_uc010lpa.2_Missense_Mutation_p.A231V	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	203											0	Melanoma(164;0.205)					GGCTTCCCAGGCATCTGACGA	0.542													13	25					0	0	0.00136819	0	0
SSPO	23145	broad.mit.edu	37	7	149519198	149519198	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:149519198C>T	uc010lpk.2	+	91	13002	c.13002C>T	c.(13000-13002)TGC>TGT	p.C4334C	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_RNA|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4334	TSP type-1 21.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGGGTCCTGCCCCTGCCTGA	0.711													17	32					0	0	0.00074312	0	0
KCNH2	3757	broad.mit.edu	37	7	150648062	150648062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:150648062C>T	uc003wic.2	-	8	2105	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K	KCNH2_uc003wib.2_Missense_Mutation_p.E358K|KCNH2_uc011kux.1_Missense_Mutation_p.E602K|KCNH2_uc003wid.2_Missense_Mutation_p.E358K|KCNH2_uc003wie.2_Missense_Mutation_p.E698K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	698	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	AAGTACTCCTCGAGGCGCTGG	0.652													12	20					0	0	0.00244969	0	0
NOS3	4846	broad.mit.edu	37	7	150698429	150698429	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:150698429C>T	uc003wif.2	+	11	1640	c.1344C>T	c.(1342-1344)ATC>ATT	p.I448I	NOS3_uc011kuy.1_Silent_p.I242I|NOS3_uc011kuz.1_Silent_p.I448I|NOS3_uc011kva.1_Silent_p.I448I|NOS3_uc011kvb.1_Silent_p.I448I	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	448	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	GGGCCTGGATCGTGCCCCCCA	0.622													24	40					0	0	0.00278032	0	0
GALNTL5	168391	broad.mit.edu	37	7	151716746	151716746	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:151716746C>T	uc003wkp.2	+	9	1415	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*	GALNTL5_uc003wkq.2_Nonsense_Mutation_p.R149*|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Nonsense_Mutation_p.R287*	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	398	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		GTTTTTTCTTCGAAAGCCTGG	0.378													34	48					0	0	0.00222228	0	0
GALNT11	63917	broad.mit.edu	37	7	151818699	151818699	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:151818699G>A	uc010lqg.1	+	12	1994	c.1764G>A	c.(1762-1764)AAG>AAA	p.K588K	GALNT11_uc011kvm.1_Silent_p.K507K|GALNT11_uc003wku.2_Silent_p.K588K	NM_022087	NP_071370	Q8NCW6	GLT11_HUMAN	N-acetylgalactosaminyltransferase 11	588	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.214)	OV - Ovarian serous cystadenocarcinoma(82;0.00168)	UCEC - Uterine corpus endometrioid carcinoma (81;0.177)|BRCA - Breast invasive adenocarcinoma(188;0.0932)		TGGGTCAGAAGGGCTCTGTCG	0.517													24	38					0	0	0.000720815	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959842	157959842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:157959842G>A	uc003wno.2	-	6	812	c.691C>T	c.(691-693)CCT>TCT	p.P231S	PTPRN2_uc003wnp.2_Missense_Mutation_p.P214S|PTPRN2_uc003wnq.2_Missense_Mutation_p.P231S|PTPRN2_uc003wnr.2_Missense_Mutation_p.P193S|PTPRN2_uc011kwa.1_Missense_Mutation_p.P254S	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	231	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TCCACCTTAGGGCTGAGCTCA	0.697													14	29					0	0	0.000422831	0	0
MYOM2	9172	broad.mit.edu	37	8	2021490	2021490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:2021490C>T	uc003wpx.3	+	10	1168	c.1030C>T	c.(1030-1032)CAC>TAC	p.H344Y	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	344	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GTCCTTCAGCCACCTGCACAA	0.592													26	13					0	0	0.000878237	0	0
CSMD1	64478	broad.mit.edu	37	8	2800022	2800022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:2800022C>T	uc011kwk.1	-	69	10900	c.10510G>A	c.(10510-10512)GGG>AGG	p.G3504R	CSMD1_uc011kwj.1_Missense_Mutation_p.G2818R|CSMD1_uc010lrg.2_Missense_Mutation_p.G1395R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3504	Helical; (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AATGCAAACCCTGATAAAATT	0.438													7	6					0	0	0.000157383	0	0
SOX7	83595	broad.mit.edu	37	8	10583712	10583712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:10583712G>A	uc003wtf.2	-	2	782	c.703C>T	c.(703-705)CCC>TCC	p.P235S	SOX7_uc011kwz.1_Missense_Mutation_p.P287S	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	235					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		GGCAGGTGGGGGATGCGGCGG	0.692													18	12					0	0	0.000720815	0	0
DLC1	10395	broad.mit.edu	37	8	12957202	12957202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:12957202C>T	uc003wwm.2	-	9	3088	c.2644G>A	c.(2644-2646)GTG>ATG	p.V882M	DLC1_uc003wwk.1_Missense_Mutation_p.V445M|DLC1_uc003wwl.1_Missense_Mutation_p.V479M|DLC1_uc011kxx.1_Missense_Mutation_p.V371M	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	882					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GAGCCCGGCACGTTGTCGTAG	0.582													8	5					0	0	0.000274275	0	0
CNOT7	29883	broad.mit.edu	37	8	17102580	17102580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:17102580G>A	uc003wxf.1	-	2	250	c.82C>T	c.(82-84)CGT>TGT	p.R28C	CNOT7_uc003wxg.1_Missense_Mutation_p.R28C|CNOT7_uc003wxh.1_Missense_Mutation_p.R28C|CNOT7_uc003wxi.1_Missense_Mutation_p.R28C|VPS37A_uc003wxj.2_5'Flank|VPS37A_uc003wxk.2_5'Flank	NM_013354	NP_037486	Q9UIV1	CNOT7_HUMAN	CCR4-NOT transcription complex, subunit 7	28					carbohydrate metabolic process|nuclear-transcribed mRNA poly(A) tail shortening	CCR4-NOT complex|cytoplasmic mRNA processing body|cytosol	nucleic acid binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1				Colorectal(111;0.0523)|COAD - Colon adenocarcinoma(73;0.209)		ATAACTTGACGAATTTTCTTC	0.388													38	20					0	0	0.00128727	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20077788	20077788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:20077788C>T	uc003wzp.2	+	14	1625	c.1411C>T	c.(1411-1413)CGC>TGC	p.R471C	ATP6V1B2_uc003wzq.1_RNA	NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	471					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		TTACGAAAATCGCACTGTCTT	0.393													16	5					0	0	0.00152264	0	0
GPR124	25960	broad.mit.edu	37	8	37693275	37693275	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:37693275C>T	uc003xkj.2	+	13	2400	c.2037C>T	c.(2035-2037)ATC>ATT	p.I679I	GPR124_uc010lvy.2_Intron	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	679	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			CCCCCGTCATCTTCGCAGGAA	0.657													8	5					0	0	0.000274275	0	0
ADAM32	203102	broad.mit.edu	37	8	39080726	39080726	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:39080726C>T	uc003xmt.3	+	14	1739	c.1494C>T	c.(1492-1494)CTC>CTT	p.L498L	ADAM32_uc011lch.1_Silent_p.L399L|ADAM32_uc003xmu.3_Silent_p.L392L|ADAM32_uc003xmv.2_Missense_Mutation_p.S20L	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	498	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			GCCATGATCTCGATGCACGTT	0.353													10	9					0	0	0.000978159	0	0
ADAM18	8749	broad.mit.edu	37	8	39587459	39587459	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:39587459A>T	uc003xni.2	+	20	2220	c.2220A>T	c.(2218-2220)TAA>TAT	p.*740Y	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Nonstop_Mutation_p.*716Y	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	740					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TGGGACATTAATATTGCACAG	0.328													43	79					0	0	0.000781405	0	0
ADAM2	2515	broad.mit.edu	37	8	39618716	39618716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:39618716C>T	uc003xnj.2	-	15	1667	c.1592G>A	c.(1591-1593)GGA>GAA	p.G531E	ADAM2_uc003xnk.2_Missense_Mutation_p.G512E|ADAM2_uc011lck.1_Missense_Mutation_p.G531E|ADAM2_uc003xnl.2_Missense_Mutation_p.G405E	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	531	Extracellular (Potential).|Cys-rich.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTGTGTGTATCCTGAATCACT	0.323													38	52					0	0	0.000680045	0	0
ADAM2	2515	broad.mit.edu	37	8	39644506	39644506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:39644506C>T	uc003xnj.2	-	10	953	c.878G>A	c.(877-879)GGA>GAA	p.G293E	ADAM2_uc003xnk.2_Missense_Mutation_p.G274E|ADAM2_uc011lck.1_Missense_Mutation_p.G293E|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	293	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		AACAACACCTCCTGCATAGTT	0.294													14	25					0	0	0.000422831	0	0
ADAM2	2515	broad.mit.edu	37	8	39645728	39645728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:39645728C>T	uc003xnj.2	-	9	760	c.685G>A	c.(685-687)GAG>AAG	p.E229K	ADAM2_uc003xnk.2_Missense_Mutation_p.E210K|ADAM2_uc011lck.1_Missense_Mutation_p.E229K|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	229	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		ATCCAAAGCTCCAATGAAGAC	0.274													9	38					0	0	0.000673444	0	0
MYST3	7994	broad.mit.edu	37	8	41792157	41792157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:41792157G>A	uc010lxb.2	-	18	4125	c.3581C>T	c.(3580-3582)TCC>TTC	p.S1194F	MYST3_uc010lxc.2_Missense_Mutation_p.S1194F|MYST3_uc003xon.3_Missense_Mutation_p.S1194F	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1194					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TTTAGGAATGGAAACGATGGG	0.418													47	87					0	0	0.000781405	0	0
FNTA	2339	broad.mit.edu	37	8	42940407	42940407	+	Silent	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:42940407A>T	uc003xps.2	+	9	1170	c.1122A>T	c.(1120-1122)CCA>CCT	p.P374P	FNTA_uc003xpt.2_Silent_p.P283P|FNTA_uc003xpu.2_Silent_p.P307P|FNTA_uc003xpv.2_RNA	NM_002027	NP_002018	P49354	FNTA_HUMAN	farnesyltransferase, CAAX box, alpha isoform a	374					cellular component disassembly involved in apoptosis|positive regulation of deacetylase activity|positive regulation of tubulin deacetylation|protein farnesylation|protein geranylgeranylation|transforming growth factor beta receptor signaling pathway	cytosol|microtubule associated complex	alpha-tubulin binding|CAAX-protein geranylgeranyltransferase activity|microtubule binding|protein farnesyltransferase activity			ovary(1)	1	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			ATGACTCACCAACAAATGTAC	0.393													12	31					0	0	0.000978159	0	0
ATP6V1H	51606	broad.mit.edu	37	8	54684653	54684653	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:54684653C>T	uc003xrl.2	-	10	1097	c.945G>A	c.(943-945)CTG>CTA	p.L315L	ATP6V1H_uc003xrk.2_Silent_p.L275L|ATP6V1H_uc003xrm.2_Silent_p.L315L|ATP6V1H_uc003xrn.2_Silent_p.L297L|ATP6V1H_uc011ldv.1_Silent_p.L235L|ATP6V1H_uc010lyd.2_Silent_p.L251L	NM_213620	NP_998785	Q9UI12	VATH_HUMAN	ATPase, H+ transporting, lysosomal 50/57kDa, V1	315					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|endocytosis|insulin receptor signaling pathway|interspecies interaction between organisms|regulation of defense response to virus by virus|transferrin transport|vacuolar acidification|viral reproduction	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase, V1 domain	enzyme regulator activity|protein binding|proton-transporting ATPase activity, rotational mechanism				0		all_epithelial(80;0.0487)|Lung NSC(129;0.109)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;2.79e-06)|Epithelial(17;0.000629)|all cancers(17;0.00359)			CCAACTGTTTCAGAACTTTGC	0.393													22	30					0	0	0.00152264	0	0
TRIM55	84675	broad.mit.edu	37	8	67066387	67066387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:67066387G>A	uc003xvv.2	+	9	1568	c.1342G>A	c.(1342-1344)GGC>AGC	p.G448S	TRIM55_uc003xvu.2_Missense_Mutation_p.G448S|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	448						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			TTGGTATAAAGGCCAAACCCG	0.552													16	30					0	0	0.000422831	0	0
SULF1	23213	broad.mit.edu	37	8	70488375	70488375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:70488375C>T	uc010lza.1	+	6	1060	c.343C>T	c.(343-345)CCC>TCC	p.P115S	SULF1_uc003xyd.2_Missense_Mutation_p.P115S|SULF1_uc003xye.2_Missense_Mutation_p.P115S|SULF1_uc003xyf.2_Missense_Mutation_p.P115S|SULF1_uc003xyg.2_Missense_Mutation_p.P115S	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	115					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CTGCTCTTCCCCCTCGTGGCA	0.517													25	33					0	0	0.00047179	0	0
STMN2	11075	broad.mit.edu	37	8	80567234	80567234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:80567234G>A	uc003ybj.2	+	4	468	c.417G>A	c.(415-417)ATG>ATA	p.M139I	STMN2_uc010lzp.2_RNA|STMN2_uc011lfn.1_Intron	NM_007029	NP_008960	Q93045	STMN2_HUMAN	superiorcervical ganglia, neural specific 10	139	Potential.				intracellular signal transduction|negative regulation of microtubule depolymerization|negative regulation of microtubule polymerization|negative regulation of neuron projection development|neuron differentiation|positive regulation of microtubule depolymerization|positive regulation of neuron projection development	axon|growth cone|membrane|membrane fraction|perinuclear region of cytoplasm|soluble fraction	protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(9;8.34e-05)		Epithelial(68;0.0229)|all cancers(69;0.0874)			TCCTGAAAATGGAACAAATTA	0.453													17	6					0	0	0.000422831	0	0
PMP2	5375	broad.mit.edu	37	8	82357094	82357094	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:82357094G>A	uc003ycb.1	-	2	302	c.204C>T	c.(202-204)GGC>GGT	p.G68G	PMP2_uc010lzv.1_Intron	NM_002677	NP_002668	P02689	MYP2_HUMAN	peripheral myelin protein 2	68						cytoplasm	cholesterol binding|fatty acid binding|transporter activity				0			Epithelial(68;0.186)			CAAATTCCTGGCCTAGCTTGA	0.393													31	48					0	0	0.00058488	0	0
CA13	377677	broad.mit.edu	37	8	86163020	86163020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:86163020C>T	uc003ydg.2	+	2	431	c.89C>T	c.(88-90)TCT>TTT	p.S30F	CA13_uc003ydf.1_RNA	NM_198584	NP_940986	Q8N1Q1	CAH13_HUMAN	carbonic anhydrase XIII	30					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0						GATCAGCAATCTCCAATTGAG	0.353													35	72					0	0	0.000953801	0	0
VPS13B	157680	broad.mit.edu	37	8	100844872	100844872	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:100844872C>T	uc003yiv.2	+	52	9792	c.9681C>T	c.(9679-9681)TTC>TTT	p.F3227F	VPS13B_uc003yiw.2_Silent_p.F3202F	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3227					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AAAATGGATTCTGTACCAGGT	0.463													17	27					0	0	0.000958276	0	0
VPS13B	157680	broad.mit.edu	37	8	100865925	100865925	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:100865925G>A	uc003yiv.2	+	56	10494	c.10383G>A	c.(10381-10383)AAG>AAA	p.K3461K	VPS13B_uc003yiw.2_Silent_p.K3436K	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3461					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTTATAACAAGTCCAATTTCC	0.488													25	40					0	0	0.000720815	0	0
RIMS2	9699	broad.mit.edu	37	8	104924360	104924360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:104924360G>A	uc003yls.2	+	4	1347	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	RIMS2_uc003ylp.2_Missense_Mutation_p.G591E|RIMS2_uc003ylw.2_Missense_Mutation_p.G399E|RIMS2_uc003ylq.2_Missense_Mutation_p.G399E|RIMS2_uc003ylr.2_Missense_Mutation_p.G446E|RIMS2_uc003ylt.2_5'UTR	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	669	PDZ.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CTAAAAGATGGAAGTGTACCT	0.373										HNSCC(12;0.0054)			32	40					0	0	0.000692331	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367173	105367173	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:105367173C>T	uc003ylx.1	+	3	1147	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	366					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCAACTGTATCCCAAAACCAA	0.348													21	30					0	0	0.00152264	0	0
LRP12	29967	broad.mit.edu	37	8	105509290	105509290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:105509290G>A	uc003yma.2	-	5	1585	c.1490C>T	c.(1489-1491)GCC>GTC	p.A497V	LRP12_uc003ymb.2_Missense_Mutation_p.A478V|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	497	Helical; (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCCTATGACGGCAGCAGTGAT	0.448													24	39					0	0	0.00106085	0	0
TMEM74	157753	broad.mit.edu	37	8	109797193	109797193	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:109797193C>T	uc003ymy.1	-	2	240	c.135G>A	c.(133-135)CAG>CAA	p.Q45Q	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	45					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			TGGATGCACACTGTTTCTGAC	0.547													30	53					0	0	0.00209593	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110397851	110397851	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:110397851G>A	uc003yne.2	+	6	665	c.561G>A	c.(559-561)AGG>AGA	p.R187R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	187	Extracellular (Potential).|IPT/TIG 2.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AAAATGTTAGGATTTTGAGGT	0.289										HNSCC(38;0.096)			21	26					0	0	0.00188189	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457572	110457572	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:110457572A>T	uc003yne.2	+	38	5578	c.5474A>T	c.(5473-5475)AAC>ATC	p.N1825I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1825	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCTCTGGGAAACCTGACTGTC	0.483										HNSCC(38;0.096)			19	27					0	0	0.00074312	0	0
CSMD3	114788	broad.mit.edu	37	8	113662482	113662482	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:113662482A>T	uc003ynu.2	-	19	3260	c.3101T>A	c.(3100-3102)TTT>TAT	p.F1034Y	CSMD3_uc003yns.2_Missense_Mutation_p.F306Y|CSMD3_uc003ynt.2_Missense_Mutation_p.F994Y|CSMD3_uc011lhx.1_Missense_Mutation_p.F930Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1034	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATCACAACTAAATGAAACAGT	0.453										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			46	53					0	0	0.000781405	0	0
CSMD3	114788	broad.mit.edu	37	8	113697928	113697928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:113697928C>T	uc003ynu.2	-	15	2348	c.2189G>A	c.(2188-2190)GGA>GAA	p.G730E	CSMD3_uc003yns.2_Missense_Mutation_p.G2E|CSMD3_uc003ynt.2_Missense_Mutation_p.G690E|CSMD3_uc011lhx.1_Missense_Mutation_p.G626E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	730	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAGAACTGTTCCCATTGGTGC	0.358										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			24	52					0	0	0.000878237	0	0
COL14A1	7373	broad.mit.edu	37	8	121295969	121295969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:121295969G>A	uc003yox.2	+	32	4184	c.3919G>A	c.(3919-3921)GAG>AAG	p.E1307K	COL14A1_uc003yoz.2_Missense_Mutation_p.E272K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1307	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TGCTCTTTGGGAGATTTTAAA	0.383													35	35					0	0	0.00058488	0	0
FER1L6	654463	broad.mit.edu	37	8	125072930	125072930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:125072930C>T	uc003yqw.2	+	24	3333	c.3127C>T	c.(3127-3129)CAG>TAG	p.Q1043*	uc003yqy.1_RNA	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1043	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTTCAGCATCCAGGCAGACGC	0.527													17	49					0	0	0.000958276	0	0
FAM135B	51059	broad.mit.edu	37	8	139165277	139165277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:139165277C>T	uc003yuy.2	-	13	1612	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	FAM135B_uc003yux.2_Missense_Mutation_p.E382K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E43K|FAM135B_uc003yvb.2_Missense_Mutation_p.E43K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	481										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCACCTGGCTCTGGACACCTT	0.393										HNSCC(54;0.14)			20	36					0	0	0.001512	0	0
COL22A1	169044	broad.mit.edu	37	8	139642954	139642954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:139642954C>T	uc003yvd.2	-	50	4094	c.3647G>A	c.(3646-3648)GGA>GAA	p.G1216E	COL22A1_uc011ljo.1_Missense_Mutation_p.G496E	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1216	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCCTTGGATTCCTGGTGGTCC	0.473										HNSCC(7;0.00092)			27	49					0	0	0.001512	0	0
COL22A1	169044	broad.mit.edu	37	8	139788214	139788214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:139788214C>T	uc003yvd.2	-	16	2245	c.1798G>A	c.(1798-1800)GAA>AAA	p.E600K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	600	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			AATACCTTTTCTCCTCGAGTT	0.433										HNSCC(7;0.00092)			25	44					0	0	0.001512	0	0
KCNK9	51305	broad.mit.edu	37	8	140631018	140631018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:140631018C>T	uc003yvf.1	-	2	672	c.608G>A	c.(607-609)GGG>GAG	p.G203E	KCNK9_uc003yvg.1_Missense_Mutation_p.G203E|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	203						integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CACGTAGTCCCCGAACCCAAT	0.587													9	27					0	0	0.000274275	0	0
TRAPPC9	83696	broad.mit.edu	37	8	140922496	140922496	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:140922496G>A	uc003yvj.2	-	20	2993	c.2859C>T	c.(2857-2859)TCC>TCT	p.S953S	TRAPPC9_uc003yvh.2_Silent_p.S1051S|TRAPPC9_uc010mel.1_Silent_p.S374S|TRAPPC9_uc003yvi.1_Silent_p.S944S	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	953					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						TCTCCCCAGGGGACTCCGGGA	0.537													20	34					0	0	0.00188189	0	0
ZC3H3	23144	broad.mit.edu	37	8	144550575	144550575	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:144550575G>A	uc003yyd.2	-	7	2111	c.2082C>T	c.(2080-2082)CCC>CCT	p.P694P		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	694	C3H1-type 1.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CCACCTTCTCGGGATCGTGGA	0.672													6	5					0	0	0.00116845	0	0
FAM83H	286077	broad.mit.edu	37	8	144810762	144810762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr8:144810762G>A	uc003yzk.2	-	5	938	c.869C>T	c.(868-870)GCC>GTC	p.A290V	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	290					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GCGGGCCAGGGCCGCGGCCGA	0.706													5	5					0	0	0.00116845	0	0
SMARCA2	6595	broad.mit.edu	37	9	2039544	2039544	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:2039544C>A	uc003zhc.2	+	4	533	c.434C>A	c.(433-435)CCA>CAA	p.P145Q	SMARCA2_uc003zhd.2_Missense_Mutation_p.P145Q|SMARCA2_uc010mha.2_Missense_Mutation_p.P136Q	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	145					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		GGCCCAACTCCACCTCAGATG	0.567													28	54					2.4375e-19	1.01096e-18	0.00127121	1	0
SLC1A1	6505	broad.mit.edu	37	9	4585316	4585316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:4585316C>T	uc003zij.1	+	12	1569	c.1333C>T	c.(1333-1335)CGG>TGG	p.R445W	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	445					D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	CCCCAGGGACCGGTTCAGGAC	0.507													30	37					0	0	0.00283554	0	0
JAK2	3717	broad.mit.edu	37	9	5064921	5064921	+	Silent	SNP	C	T	T	rs140973912		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:5064921C>T	uc010mhm.2	+	8	1208	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	JAK2_uc003ziw.2_Silent_p.F365F	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	365	FERM.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		CTTTGTCTTTCGTGTCATTAA	0.348		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				31	65					0	0	0.00111076	0	0
GLDC	2731	broad.mit.edu	37	9	6534758	6534758	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:6534758A>G	uc003zkc.2	-	24	3062	c.2869T>C	c.(2869-2871)TCT>CCT	p.S957P		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	957					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CAGTGGGAAGATGTAACGCAG	0.557													12	22					0	0	0.00244969	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18889697	18889697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:18889697C>T	uc003zne.3	+	25	4721	c.4594C>T	c.(4594-4596)CGC>TGC	p.R1532C	ADAMTSL1_uc003znf.3_Missense_Mutation_p.R233C	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1532						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AGGGAAGGTTCGCCCTGCGGT	0.667													5	8					0	0	0.00116845	0	0
IFNW1	3467	broad.mit.edu	37	9	21141139	21141139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:21141139C>T	uc003zol.1	-	1	1006	c.431G>A	c.(430-432)AGG>AAG	p.R144K		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	144					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GAAGTACCTCCTCAAGGTCAG	0.498													14	27					0	0	0.00244969	0	0
ELAVL2	1993	broad.mit.edu	37	9	23762229	23762229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:23762229C>T	uc003zpu.2	-	2	279	c.4G>A	c.(4-6)GAA>AAA	p.E2K	ELAVL2_uc003zps.2_Missense_Mutation_p.E2K|ELAVL2_uc003zpt.2_Missense_Mutation_p.E2K|ELAVL2_uc003zpv.2_Missense_Mutation_p.E2K|ELAVL2_uc003zpw.2_Missense_Mutation_p.E2K	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	2					regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		AGTTGTGTTTCCATGGCAGCA	0.398													25	10					0	0	0.000720815	0	0
LINGO2	158038	broad.mit.edu	37	9	27949564	27949564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:27949564C>T	uc003zqu.1	-	2	1300	c.1106G>A	c.(1105-1107)CGA>CAA	p.R369Q	LINGO2_uc010mjf.1_Missense_Mutation_p.R369Q|LINGO2_uc003zqv.1_Missense_Mutation_p.R369Q	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	369	LRRCT.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GGTGGGCTGTCGCTGCAAGAT	0.547													8	14					0	0	0.000157383	0	0
LINGO2	158038	broad.mit.edu	37	9	27949714	27949715	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:27949714_27949715CC>TT	uc003zqu.1	-	2	1149_1150	c.955_956GG>AA	c.(955-957)GGG>AAG	p.G319K	LINGO2_uc010mjf.1_Missense_Mutation_p.G319K|LINGO2_uc003zqv.1_Missense_Mutation_p.G319K	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	319	LRR 11.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GAAGCGGAGCCCTTGGAAGGAG	0.54													21	51					0	0	6.4e-05	0	0
C9orf131	138724	broad.mit.edu	37	9	35044877	35044877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:35044877G>A	uc003zvw.2	+	2	2280	c.2251G>A	c.(2251-2253)GGA>AGA	p.G751R	C9orf131_uc003zvu.2_Missense_Mutation_p.G703R|C9orf131_uc003zvv.2_Missense_Mutation_p.G678R|C9orf131_uc003zvx.2_Missense_Mutation_p.G716R	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	751											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			TCTACCCAAGGGAGTAACGTG	0.607													23	37					0	0	0.00278032	0	0
CCIN	881	broad.mit.edu	37	9	36170567	36170567	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:36170567C>T	uc003zzb.3	+	1	1179	c.1068C>T	c.(1066-1068)ACC>ACT	p.T356T		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	356	Kelch 2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			ACTCCTGGACCAAGTTGCCTG	0.582													23	47					0	0	0.00278032	0	0
SHB	6461	broad.mit.edu	37	9	38068610	38068610	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:38068610C>G	uc004aax.2	-	1	601	c.33G>C	c.(31-33)TTG>TTC	p.L11F		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	11	Mediates interaction with LAT, FAK1, JAK1 and JAK3.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		TGCTGTTGCCCAAGCTGAAGT	0.517													3	16					0	0	0.00024832	0	0
PRKACG	5568	broad.mit.edu	37	9	71628039	71628039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:71628039C>T	uc004agy.2	-	1	1001	c.970G>A	c.(970-972)GAT>AAT	p.D324N		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	324	AGC-kinase C-terminal.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TTACTGGCATCCCCAGGGCCT	0.522													27	47					0	0	0.00209593	0	0
TJP2	9414	broad.mit.edu	37	9	71852825	71852826	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:71852825_71852826CC>TT	uc004ahe.2	+	15	2411_2412	c.2211_2212CC>TT	c.(2209-2214)GGCCCC>GGTTCC	p.P738S	TJP2_uc011lrs.1_Missense_Mutation_p.P715S|TJP2_uc011lrt.1_Missense_Mutation_p.P715S|TJP2_uc004ahd.2_Missense_Mutation_p.P738S|TJP2_uc004ahf.2_Missense_Mutation_p.P738S|TJP2_uc011lru.1_Missense_Mutation_p.P742S|TJP2_uc011lrv.1_Missense_Mutation_p.P760S	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	738	Guanylate kinase-like.				cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						TCTTATTCGGCCCCATAGCTGA	0.361													13	32					0	0	6.4e-05	0	0
TRPM3	80036	broad.mit.edu	37	9	73151427	73151427	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:73151427G>A	uc004aid.2	-	25	4810	c.4566C>T	c.(4564-4566)AGC>AGT	p.S1522S	TRPM3_uc004ahu.2_Silent_p.S1364S|TRPM3_uc004ahv.2_Silent_p.S1324S|TRPM3_uc004ahw.2_Silent_p.S1394S|TRPM3_uc004ahx.2_Silent_p.S1381S|TRPM3_uc004ahy.2_Silent_p.S1384S|TRPM3_uc004ahz.2_Silent_p.S1371S|TRPM3_uc004aia.2_Silent_p.S1369S|TRPM3_uc004aib.2_Silent_p.S1359S|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1547	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						AAAACATAAAGCTATGAGATT	0.458													40	55					0	0	0.00222228	0	0
ALDH1A1	216	broad.mit.edu	37	9	75531867	75531868	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:75531867_75531868GG>AA	uc004ajd.2	-	9	1056_1057	c.1003_1004CC>TT	c.(1003-1005)CCT>TTT	p.P335F	ALDH1A1_uc011lsh.1_Missense_Mutation_p.P256F|ALDH1A1_uc011lsg.1_Missense_Mutation_p.P161F	NM_000689	NP_000680	P00352	AL1A1_HUMAN	aldehyde dehydrogenase 1A1	335					cellular aldehyde metabolic process|ethanol oxidation|xenobiotic metabolic process	cytosol	aldehyde dehydrogenase (NAD) activity|androgen binding|Ras GTPase activator activity|retinal dehydrogenase activity			ovary(3)|lung(1)	4					NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	TGGGGTCAGAGGATTTCCAAGG	0.416													20	30					0	0	6.4e-05	0	0
PCSK5	5125	broad.mit.edu	37	9	78682918	78682918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:78682918C>T	uc004ajz.2	+	6	1218	c.680C>T	c.(679-681)TCG>TTG	p.S227L	PCSK5_uc004ajy.2_Missense_Mutation_p.S227L|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	227	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GCAAACAATTCGCACTGCACA	0.512													54	70					0	0	0.000781405	0	0
VPS13A	23230	broad.mit.edu	37	9	79946995	79946995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:79946995G>A	uc004akr.2	+	46	6321	c.6061G>A	c.(6061-6063)GAA>AAA	p.E2021K	VPS13A_uc004akp.3_Missense_Mutation_p.E2021K|VPS13A_uc004akq.3_Missense_Mutation_p.E2021K|VPS13A_uc004aks.2_Missense_Mutation_p.E1982K|VPS13A_uc004akt.2_Missense_Mutation_p.E361K	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2021	TPR 6.				Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TGCCTCACCTGAAAATGAATT	0.313													43	69					0	0	0.000781405	0	0
WNK2	65268	broad.mit.edu	37	9	96024118	96024118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:96024118C>T	uc004ati.1	+	12	3089	c.3089C>T	c.(3088-3090)CCC>CTC	p.P1030L	WNK2_uc011lud.1_Missense_Mutation_p.P1030L|WNK2_uc004atj.2_Missense_Mutation_p.P1030L|WNK2_uc004atk.2_Missense_Mutation_p.P667L	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1030					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CACCCAGCTCCCTATGCTGTG	0.701													31	39					0	0	0.00128727	0	0
ZNF169	169841	broad.mit.edu	37	9	97062188	97062188	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:97062188C>T	uc004aum.1	+	5	453	c.348C>T	c.(346-348)CCC>CCT	p.P116P		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	116						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				GTGGCCATCCCACACAGATCT	0.517													32	39					0	0	0.00283554	0	0
HSD17B3	3293	broad.mit.edu	37	9	99013708	99013708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:99013708C>T	uc004awa.1	-	5	493	c.445G>A	c.(445-447)GAA>AAA	p.E149K	HSD17B3_uc010msc.1_Missense_Mutation_p.E149K	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	149					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	ACCTGGATTTCATCCGGTGCG	0.488													25	31					0	0	0.000878237	0	0
KIAA1529	57653	broad.mit.edu	37	9	100139087	100139087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:100139087G>A	uc011lut.1	+	49	6207	c.5434G>A	c.(5434-5436)GAT>AAT	p.D1812N	KIAA1529_uc004axe.1_Missense_Mutation_p.D1618N|KIAA1529_uc004axg.1_Missense_Mutation_p.D1673N|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.D766N	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				GAGGATCCAGGATGACTGTAC	0.532													26	44					0	0	0.000878237	0	0
OR13F1	138805	broad.mit.edu	37	9	107267348	107267348	+	Missense_Mutation	SNP	G	A	A	rs140352060		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:107267348G>A	uc011lvm.1	+	1	805	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						AGATTCACAGGAAATAGACAA	0.468													15	34					0	0	0.000308642	0	0
ABCA1	19	broad.mit.edu	37	9	107581899	107581899	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:107581899C>A	uc004bcl.2	-	22	3522	c.3209G>T	c.(3208-3210)GGA>GTA	p.G1070V		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1070	ABC transporter 1.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CTCCCATATTCCCCTGCGGGA	0.517													45	53					1.21353e-23	5.0403e-23	0.000781405	1	0
ACTL7B	10880	broad.mit.edu	37	9	111617648	111617648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:111617648G>A	uc004bdi.2	-	1	628	c.563C>T	c.(562-564)TCC>TTC	p.S188F		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	188						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						CTTGCCGTAGGAGTAGATGGA	0.657													16	22					0	0	0.000566183	0	0
IKBKAP	8518	broad.mit.edu	37	9	111658840	111658840	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:111658840T>G	uc004bdm.3	-	25	3192	c.2672A>C	c.(2671-2673)TAT>TCT	p.Y891S	IKBKAP_uc004bdl.2_Missense_Mutation_p.Y542S|IKBKAP_uc011lwc.1_Missense_Mutation_p.Y777S|IKBKAP_uc010mtq.2_Missense_Mutation_p.Y542S	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	891					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						AGAATGATCATATAATTCATT	0.403													12	26					0	0	0.000978159	0	0
C9orf5	23731	broad.mit.edu	37	9	111812631	111812631	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:111812631G>A	uc004bdt.3	-	14	2087	c.2055C>T	c.(2053-2055)AGC>AGT	p.S685S	C9orf5_uc004bds.3_RNA|C9orf5_uc004bdr.3_Silent_p.S677S	NM_032012	NP_114401	Q9H330	CI005_HUMAN	hypothetical protein LOC23731	685						integral to membrane				central_nervous_system(1)	1		Myeloproliferative disorder(63;0.204)		OV - Ovarian serous cystadenocarcinoma(323;3.08e-05)|STAD - Stomach adenocarcinoma(157;0.0823)		GTGGAGTCAGGCTTATCACCC	0.393													17	28					0	0	0.00152264	0	0
TLR4	7099	broad.mit.edu	37	9	120475571	120475571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:120475571G>A	uc004bjz.2	+	3	1456	c.1165G>A	c.(1165-1167)GGT>AGT	p.G389S	TLR4_uc004bka.2_Missense_Mutation_p.G349S|TLR4_uc004bkb.2_Missense_Mutation_p.G189S	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	389	LRR 11.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GAGTTTCAAAGGTTGCTGTTC	0.393													6	13					0	0	0.00116845	0	0
DBC1	1620	broad.mit.edu	37	9	121930245	121930245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:121930245G>A	uc004bkc.2	-	8	1859	c.1403C>T	c.(1402-1404)TCG>TTG	p.S468L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	468					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTCCGCTCCGAGTCCACGTT	0.587													18	17					0	0	0.00152264	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123330627	123330627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:123330627C>T	uc004bkf.2	-	3	348	c.167G>A	c.(166-168)AGA>AAA	p.R56K	CDK5RAP2_uc004bkg.2_Missense_Mutation_p.R56K|CDK5RAP2_uc011lxw.1_5'UTR|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_5'UTR|CDK5RAP2_uc011lya.1_5'UTR|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.R56K	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	56					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						GTTCCGTGCTCTGGTGGGAGA	0.453													67	83					0	0	0.000781405	0	0
PHF19	26147	broad.mit.edu	37	9	123624282	123624282	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:123624282A>C	uc004bks.1	-	12	1385	c.1132T>G	c.(1132-1134)TTG>GTG	p.L378V	PHF19_uc011lyf.1_Missense_Mutation_p.L169V|PHF19_uc004bkr.2_Intron	NM_015651	NP_056466	Q5T6S3	PHF19_HUMAN	PHD finger protein 19 isoform a	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|breast(1)	2						TGAGGCAACAAACTGTGGAGA	0.542													29	40					0	0	0.00178596	0	0
TRAF1	7185	broad.mit.edu	37	9	123676003	123676003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:123676003G>A	uc004bku.1	-	5	880	c.308C>T	c.(307-309)TCT>TTT	p.S103F	TRAF1_uc011lyg.1_5'UTR|TRAF1_uc010mvl.1_Missense_Mutation_p.S103F	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	103					apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						CTCTTGCACAGACTGTGGGCT	0.577													20	28					0	0	0.00229938	0	0
OR1J4	26219	broad.mit.edu	37	9	125281758	125281758	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:125281758C>T	uc011lyw.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TAGACAATTTCCTTCTCACTT	0.408													42	42					0	0	0.00195071	0	0
OR1B1	347169	broad.mit.edu	37	9	125391722	125391722	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:125391722G>A	uc011lyz.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCAGGAACAGGAAGAAGAGGA	0.498													16	32					0	0	0.000422831	0	0
OR1L1	26737	broad.mit.edu	37	9	125423999	125423999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:125423999G>A	uc011lza.1	+	1	155	c.155G>A	c.(154-156)GGA>GAA	p.G52E		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	52	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ACAACTATGGGAAGAAATAAC	0.418													29	39					0	0	0.0024448	0	0
DENND1A	57706	broad.mit.edu	37	9	126520093	126520093	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:126520093A>G	uc004bnz.1	-	5	424	c.191T>C	c.(190-192)GTT>GCT	p.V64A	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Missense_Mutation_p.V32A|DENND1A_uc004boa.1_Missense_Mutation_p.V64A|DENND1A_uc004bob.1_Missense_Mutation_p.V34A|DENND1A_uc004boc.2_Missense_Mutation_p.V32A	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	64	UDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						AACTTGGCTAACTGTGAGGCT	0.438													6	25					0	0	0.000274275	0	0
FPGS	2356	broad.mit.edu	37	9	130575600	130575601	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:130575600_130575601CC>TT	uc004bsg.1	+	15	1531_1532	c.1481_1482CC>TT	c.(1480-1482)CCC>CTT	p.P494L	FPGS_uc004bsh.1_Missense_Mutation_p.P311L|FPGS_uc011mal.1_Missense_Mutation_p.P468L|FPGS_uc004bsi.1_Missense_Mutation_p.P444L|uc004bsl.1_5'Flank	NM_004957	NP_004948	Q05932	FOLC_HUMAN	folylpolyglutamate synthase isoform a precursor	494					folic acid metabolic process|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|one-carbon metabolic process	cytosol|mitochondrial matrix	ATP binding|tetrahydrofolylpolyglutamate synthase activity				0					L-Glutamic Acid(DB00142)	AGCCCAGAGCCCGGTGGGTCCG	0.653													12	15					0	0	6.4e-05	0	0
ENG	2022	broad.mit.edu	37	9	130588123	130588123	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:130588123G>A	uc004bsj.3	-	5	953	c.540C>T	c.(538-540)TCC>TCT	p.S180S	ENG_uc011mam.1_5'UTR|ENG_uc004bsk.3_Silent_p.S180S	NM_001114753	NP_001108225	P17813	EGLN_HUMAN	endoglin isoform 1 precursor	180	Extracellular (Potential).				artery morphogenesis|BMP signaling pathway|cell adhesion|cell chemotaxis|central nervous system vasculogenesis|chronological cell aging|detection of hypoxia|extracellular matrix disassembly|heart looping|negative regulation of endothelial cell proliferation|negative regulation of nitric-oxide synthase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of protein autophosphorylation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|patterning of blood vessels|positive regulation of BMP signaling pathway|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of systemic arterial blood pressure|positive regulation of transcription from RNA polymerase II promoter|regulation of cell adhesion|regulation of cell proliferation|regulation of transcription, DNA-dependent|regulation of transforming growth factor beta receptor signaling pathway|smooth muscle tissue development|transforming growth factor beta receptor signaling pathway|venous blood vessel morphogenesis|wound healing	cell surface|external side of plasma membrane|extracellular space|membrane fraction	activin binding|galactose binding|glycosaminoglycan binding|protein homodimerization activity|transforming growth factor beta binding|transforming growth factor beta receptor activity|transforming growth factor beta receptor, cytoplasmic mediator activity|transmembrane receptor activity|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding				0						GCATGCAGAAGGACAGTGACC	0.667									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				3	3					0	0	0.000602214	0	0
NUP188	23511	broad.mit.edu	37	9	131752415	131752415	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:131752415C>T	uc004bws.1	+	25	2572	c.2550C>T	c.(2548-2550)AAC>AAT	p.N850N	NUP188_uc004bwu.2_Silent_p.N193N	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	850					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						ATGGAAACAACCTCATTGCTG	0.458													144	240					0	0	0.000781405	0	0
NUP214	8021	broad.mit.edu	37	9	134072702	134072702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:134072702C>T	uc004cag.2	+	29	3932	c.3821C>T	c.(3820-3822)CCC>CTC	p.P1274L	NUP214_uc004cah.2_Missense_Mutation_p.P1264L|NUP214_uc004cai.2_Missense_Mutation_p.P704L|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.P100L|NUP214_uc011mcf.1_Missense_Mutation_p.P51L|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1274	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AGCTCACCTCCCTCAGGAATC	0.557			T	DEK|SET|ABL1	AML|T-ALL								25	34					0	0	0.000586117	0	0
WDR5	11091	broad.mit.edu	37	9	137007825	137007825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:137007825C>T	uc004cey.2	+	7	683	c.512C>T	c.(511-513)TCG>TTG	p.S171L	WDR5_uc004cez.2_Missense_Mutation_p.S171L	NM_017588	NP_060058	P61964	WDR5_HUMAN	WD repeat domain 5	171	WD 4.				histone H3 acetylation|histone H3-K4 methylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|MLL1 complex|Set1C/COMPASS complex	protein binding				0		Myeloproliferative disorder(178;0.0255)|Medulloblastoma(224;0.123)		Epithelial(140;6.61e-13)|all cancers(34;5.66e-12)|OV - Ovarian serous cystadenocarcinoma(145;3.93e-08)|GBM - Glioblastoma multiforme(294;0.00326)|READ - Rectum adenocarcinoma(205;0.154)		CCAGCTCACTCGGATCCAGTC	0.527													46	60					0	0	0.000781405	0	0
FCN1	2219	broad.mit.edu	37	9	137801805	137801805	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:137801805A>G	uc004cfi.2	-	9	912	c.820T>C	c.(820-822)TTC>CTC	p.F274L		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	274	Fibrinogen C-terminal.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		GCTCCTTGGAACTTCTCAGCA	0.478													63	99					0	0	0.000781405	0	0
NACC2	138151	broad.mit.edu	37	9	138905067	138905067	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:138905067G>A	uc004cgw.2	-	5	1389	c.1233C>T	c.(1231-1233)AGC>AGT	p.S411S	NACC2_uc010nbh.2_Silent_p.S50S	NM_144653	NP_653254	Q96BF6	NACC2_HUMAN	BTB (POZ) domain containing 14A	411	BEN.				negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization	nuclear body					0						TCAGGACCCGGCTGTCCAGCG	0.682													27	65					0	0	0.0024448	0	0
LHX3	8022	broad.mit.edu	37	9	139089572	139089572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:139089572C>T	uc004cha.2	-	6	890	c.793G>A	c.(793-795)GAA>AAA	p.E265K	LHX3_uc004cgz.2_Missense_Mutation_p.E270K	NM_178138	NP_835258	Q9UBR4	LHX3_HUMAN	LIM homeobox protein 3 isoform a	265					inner ear development|organ morphogenesis|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;8.43e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.26e-07)		GGGCCCATTTCCGCCAAGGAA	0.682													5	10					0	0	0.00198382	0	0
PNPLA7	375775	broad.mit.edu	37	9	140409837	140409837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:140409837G>A	uc004cnf.2	-	11	1481	c.1144C>T	c.(1144-1146)CCA>TCA	p.P382S	PNPLA7_uc011mfa.1_Missense_Mutation_p.P114S|PNPLA7_uc010ncj.1_Missense_Mutation_p.P407S	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	382					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TTACCTTGTGGGGCCGAAGGG	0.647													5	7					0	0	0.000602214	0	0
CACNA1B	774	broad.mit.edu	37	9	141016315	141016315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:141016315C>T	uc004cog.2	+	46	7029	c.6884C>T	c.(6883-6885)TCC>TTC	p.S2295F	CACNA1B_uc004coi.2_Missense_Mutation_p.S1507F	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2295	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCCAGGACTTCCTACGTGTCC	0.662													20	38					0	0	0.00229938	0	0
ASMTL	8623	broad.mit.edu	37	X	1540610	1540611	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:1540610_1540611GG>AA	uc004cpx.1	-	9	1296_1297	c.1185_1186CC>TT	c.(1183-1188)ATCCGA>ATTTGA	p.R396*	ASMTL_uc011mhe.1_Nonsense_Mutation_p.R320*|ASMTL_uc004cpy.1_Nonsense_Mutation_p.R380*|ASMTL_uc011mhf.1_Nonsense_Mutation_p.R338*	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	396	ASMT-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GTTCCCTCTCGGATGGCAAACT	0.54													68	114					0	0	6.4e-05	0	0
DHRSX	207063	broad.mit.edu	37	X	2184888	2184888	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:2184888C>A	uc004cqf.3	-	5	538	c.489G>T	c.(487-489)TTG>TTT	p.L163F		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	163							binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TCAGCGTATCCAAGAGAAGGT	0.552													10	201					0.000442599	0.00181382	0.000442599	1	0
ZBED1	9189	broad.mit.edu	37	X	2406784	2406784	+	Silent	SNP	G	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:2406784G>T	uc004cqg.2	-	2	2178	c.1977C>A	c.(1975-1977)CCC>CCA	p.P659P	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.P659P	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	659						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTGGTCCTCGGGTTCCGCCT	0.652													5	90					0.00198382	0.00805091	0.00198382	1	0
MXRA5	25878	broad.mit.edu	37	X	3228200	3228200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:3228200G>A	uc004crg.3	-	7	8201	c.8044C>T	c.(8044-8046)CCC>TCC	p.P2682S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2682	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AGGGTTTGGGGGCCCTCCAGA	0.607													17	6					0	0	0.00152264	0	0
MXRA5	25878	broad.mit.edu	37	X	3239556	3239556	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:3239556C>G	uc004crg.3	-	5	4327	c.4170G>C	c.(4168-4170)AGG>AGC	p.R1390S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1390						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTGTCTGTAGCCTCCCAGGCT	0.498													5	4					0	0	0.000602214	0	0
FIGF	2277	broad.mit.edu	37	X	15364352	15364352	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:15364352C>A	uc004cwt.1	-	7	1477	c.968G>T	c.(967-969)AGA>ATA	p.R323I		NM_004469	NP_004460	O43915	VEGFD_HUMAN	vascular endothelial growth factor D	323					angiogenesis|cell differentiation|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of mast cell chemotaxis|vascular endothelial growth factor receptor signaling pathway	extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|platelet-derived growth factor receptor binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					TGCACATGGTCTGGTATGAAA	0.458													35	7					3.2961e-07	1.35648e-06	0.000953801	1	0
DDX53	168400	broad.mit.edu	37	X	23018584	23018584	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:23018584A>T	uc004daj.2	+	1	498	c.410A>T	c.(409-411)AAT>ATT	p.N137I		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	137						nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						ATTGGAAGAAATCTAGGCAGA	0.438													52	11					0	0	0.000781405	0	0
FTHL17	53940	broad.mit.edu	37	X	31089887	31089887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:31089887C>T	uc004dcl.1	-	1	287	c.184G>A	c.(184-186)GAC>AAC	p.D62N		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	62	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						TCCATTTTGTCGTCCGACAGG	0.577													39	7					0	0	0.00148497	0	0
FAM47B	170062	broad.mit.edu	37	X	34961468	34961468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:34961468G>A	uc004ddi.1	+	1	538	c.520G>A	c.(520-522)GAG>AAG	p.E174K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	174										ovary(3)|breast(1)	4						GAAGACAACCGAGGTACCCAC	0.607													15	3					0	0	0.00244969	0	0
FAM47C	442444	broad.mit.edu	37	X	37029039	37029039	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:37029039C>T	uc004ddl.1	+	1	2570	c.2556C>T	c.(2554-2556)CTC>CTT	p.L852L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	852										ovary(3)	3						CGAGAAAACTCCGTGACTTCA	0.463													55	14					0	0	0.000781405	0	0
ZNF41	7592	broad.mit.edu	37	X	47307898	47307898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:47307898G>A	uc004dhs.3	-	4	1464	c.1397C>T	c.(1396-1398)TCA>TTA	p.S466L	ZNF41_uc004dhu.3_Missense_Mutation_p.S458L|ZNF41_uc004dht.3_Missense_Mutation_p.S338L|ZNF41_uc004dhv.3_Missense_Mutation_p.S434L|ZNF41_uc004dhw.3_Missense_Mutation_p.S426L|ZNF41_uc004dhy.3_Missense_Mutation_p.S424L|ZNF41_uc004dhx.3_Missense_Mutation_p.S424L|ZNF41_uc011mlm.1_Missense_Mutation_p.S338L	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	466	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				CCTGAGTGCTGATTTTCTTGT	0.448													53	11					0	0	0.000781405	0	0
AKAP4	8852	broad.mit.edu	37	X	49958662	49958662	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:49958662C>T	uc004dow.1	-	5	826	c.702G>A	c.(700-702)AAG>AAA	p.K234K	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Silent_p.K56K|AKAP4_uc004dou.1_Silent_p.K225K	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	234					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					CCTTGATTTCCTTATGGGCCA	0.458													22	8					0	0	0.00278032	0	0
MAGED1	9500	broad.mit.edu	37	X	51641714	51641714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:51641714C>T	uc004dpm.2	+	10	1914	c.1819C>T	c.(1819-1821)CTC>TTC	p.L607F	MAGED1_uc004dpn.2_Missense_Mutation_p.L663F|MAGED1_uc004dpo.2_Missense_Mutation_p.L607F	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	607	MAGE.				apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					AAGGAAACTTCTCACCTATGA	0.453										Multiple Myeloma(10;0.10)			13	3					0	0	0.000422831	0	0
SPANXN5	494197	broad.mit.edu	37	X	52826350	52826350	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:52826350C>T	uc004drc.1	-	1	39	c.39G>A	c.(37-39)AGG>AGA	p.R13R		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	13											0	Ovarian(276;0.236)					AGGGGCTCTTCCTCTTCTCCC	0.333													65	10					0	0	0.000781405	0	0
TRO	7216	broad.mit.edu	37	X	54955515	54955515	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:54955515C>T	uc004dtq.2	+	12	2465	c.2358C>T	c.(2356-2358)AGC>AGT	p.S786S	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Silent_p.S317S|TRO_uc004dtw.2_Silent_p.S389S|TRO_uc004dtx.2_Silent_p.S169S	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	786	3; approximate.|62 X 10 AA approximate tandem repeats.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						CTAGCTCCAGCTTCAGCAGCG	0.532													27	9					0	0	0.00106085	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64721966	64721966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:64721966C>T	uc010nko.2	+	5	1364	c.1355C>T	c.(1354-1356)CCC>CTC	p.P452L		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	452							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						AGTTCTGTCCCCTCGCTTGTG	0.607													15	2					0	0	0.000308642	0	0
NLGN3	54413	broad.mit.edu	37	X	70389876	70389876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:70389876C>T	uc004dzb.2	+	7	2720	c.2416C>T	c.(2416-2418)CCC>TCC	p.P806S	NLGN3_uc004dzc.2_Missense_Mutation_p.P689S|NLGN3_uc011mps.1_Missense_Mutation_p.P786S|NLGN3_uc004dze.2_Missense_Mutation_p.P624S	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	826	Cytoplasmic (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					GACATTGCACCCCTATAACAC	0.592													6	1					0	0	0.00116845	0	0
TAF1	6872	broad.mit.edu	37	X	70683700	70683700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:70683700C>T	uc004dzu.3	+	38	5474	c.5423C>T	c.(5422-5424)CCC>CTC	p.P1808L	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.P1829L|TAF1_uc004dzv.3_Missense_Mutation_p.P1016L|TAF1_uc010nle.1_Intron|TAF1_uc010nlf.1_Intron|TAF1_uc004dzx.2_Intron|TAF1_uc004dzy.2_Intron|TAF1_uc004dzw.1_Intron|TAF1_uc010nlg.1_Intron	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	1808	Asp/Glu-rich (acidic tail).|Protein kinase 2.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				GAGCCTGATCCCAAGTCGAAC	0.443													8	1					0	0	0.000442599	0	0
XIST	7503	broad.mit.edu	37	X	73070714	73070714	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:73070714G>A	uc004ebm.1	-	1		c.1875C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGACAGGAGGGGACAAATAAG	0.527													6	2					0	0	0.00116845	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962555	73962555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:73962555C>T	uc004eby.2	-	3	2454	c.1837G>A	c.(1837-1839)GAA>AAA	p.E613K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	613					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTACCTGGTTCAAAGCTTTGC	0.453													8	2					0	0	0.000157383	0	0
P2RY10	27334	broad.mit.edu	37	X	78216491	78216491	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:78216491C>T	uc004ede.2	+	4	843	c.474C>T	c.(472-474)ATC>ATT	p.I158I	P2RY10_uc004edf.2_Silent_p.I158I	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	158	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						CCATCTGGATCGTTGTGGGGA	0.493													18	9					0	0	0.00121646	0	0
POF1B	79983	broad.mit.edu	37	X	84560875	84560875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:84560875C>T	uc004eer.2	-	13	1505	c.1359G>A	c.(1357-1359)ATG>ATA	p.M453I	POF1B_uc004ees.2_Missense_Mutation_p.M453I	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	453							actin binding				0						CAATCTCATCCATTTTAGCCT	0.393													13	2					0	0	0.00185496	0	0
KLHL4	56062	broad.mit.edu	37	X	86890673	86890673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:86890673G>A	uc004efb.2	+	9	2005	c.1823G>A	c.(1822-1824)GGA>GAA	p.G608E	KLHL4_uc004efa.2_Missense_Mutation_p.G608E	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	608	Kelch 4.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						AAAAGACGTGGAGGTGTGGGA	0.478													21	5					0	0	0.00152264	0	0
TGIF2LX	90316	broad.mit.edu	37	X	89177475	89177475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:89177475C>T	uc004efe.2	+	2	440	c.391C>T	c.(391-393)CAT>TAT	p.H131Y		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	131						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						CAAAGATGCCCATGCCACCCA	0.562													19	5					0	0	0.001512	0	0
NXF4	55999	broad.mit.edu	37	X	101805040	101805040	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:101805040G>A	uc004ejf.1	+	1		c.148G>A				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						GGTTAAGGGGGATCCTGAGCA	0.537													31	4					0	0	0.000953801	0	0
NXF4	55999	broad.mit.edu	37	X	101818438	101818438	+	RNA	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:101818438G>A	uc004ejf.1	+	7		c.1028G>A				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						TCATTGAAAGGAATTTCCCTG	0.443													17	5					0	0	0.00074312	0	0
SERPINA7	6906	broad.mit.edu	37	X	105279279	105279279	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:105279279C>T	uc004eme.1	-	2	736	c.720G>A	c.(718-720)CAG>CAA	p.Q240Q	SERPINA7_uc010npd.2_Silent_p.Q240Q|SERPINA7_uc010npe.1_Silent_p.Q240Q	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	240					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	ATTGTTCCATCTGGTGCATCA	0.453													19	7					0	0	0.00152264	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280593	105280593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:105280593G>A	uc004eme.1	-	1	473	c.457C>T	c.(457-459)CTC>TTC	p.L153F	SERPINA7_uc010npd.2_Missense_Mutation_p.L153F|SERPINA7_uc010npe.1_Missense_Mutation_p.L153F	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	153					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GTCTCATAGAGGGTCTTGACA	0.428													35	8					0	0	0.000953801	0	0
COL4A5	1287	broad.mit.edu	37	X	107935983	107935983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:107935983G>A	uc004enz.1	+	49	4736	c.4534G>A	c.(4534-4536)GCT>ACT	p.A1512T	COL4A5_uc011mso.1_Missense_Mutation_p.A1509T|COL4A5_uc011msp.1_Missense_Mutation_p.A188T	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1506	Collagen IV NC1.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TCTAGGGACGGCTGGCAGCTG	0.398									Alport_syndrome_with_Diffuse_Leiomyomatosis				25	8					0	0	0.00283554	0	0
TRPC5	7224	broad.mit.edu	37	X	111095551	111095551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:111095551G>A	uc004epl.1	-	5	2271	c.1352C>T	c.(1351-1353)TCC>TTC	p.S451F	TRPC5_uc004epm.1_Missense_Mutation_p.S451F	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	451	Helical; (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AATCTTCAGGGAAATAGTTGC	0.418													26	3					0	0	0.00047179	0	0
HTR2C	3358	broad.mit.edu	37	X	114141204	114141204	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:114141204C>T	uc004epu.1	+	6	1331	c.603C>T	c.(601-603)TTC>TTT	p.F201F	HTR2C_uc010nqc.1_Silent_p.F201F|HTR2C_uc004epv.1_Missense_Mutation_p.R170C	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	201	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	AAAAGGTGTTCGTGAACAACA	0.448													43	8					0	0	0.00285205	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223315	118223315	+	Silent	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:118223315G>A	uc004era.3	-	11	1878	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	626										ovary(4)|skin(1)	5						TTCTGGATCCGAAATCTATGC	0.468													19	5					0	0	0.00229938	0	0
THOC2	57187	broad.mit.edu	37	X	122753266	122753266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:122753266C>T	uc004etu.2	-	33	4329	c.4297G>A	c.(4297-4299)GAA>AAA	p.E1433K	THOC2_uc010nqt.1_RNA|THOC2_uc004etw.1_Missense_Mutation_p.E254K	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1433	Lys-rich.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GCTGAAGATTCCTTGAGTTCG	0.388													16	5					0	0	0.00152264	0	0
SLC25A14	9016	broad.mit.edu	37	X	129506907	129506907	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:129506907A>T	uc004evn.1	+	11	1174	c.961A>T	c.(961-963)AAG>TAG	p.K321*	SLC25A14_uc004evo.1_Nonsense_Mutation_p.K142*|SLC25A14_uc004evp.1_Nonsense_Mutation_p.K321*|SLC25A14_uc004evq.1_Nonsense_Mutation_p.K318*|SLC25A14_uc004evr.1_Nonsense_Mutation_p.K349*	NM_003951	NP_003942	O95258	UCP5_HUMAN	solute carrier family 25, member 14 isoform	321	Solcar 3.				aerobic respiration|mitochondrial transport	integral to plasma membrane|mitochondrial inner membrane	binding			ovary(1)	1						CGAGCAGCTAAAGAGGCTTCA	0.403													114	36					0	0	0.000781405	0	0
USP26	83844	broad.mit.edu	37	X	132160351	132160351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:132160351G>A	uc010nrm.1	-	6	2368	c.1898C>T	c.(1897-1899)TCT>TTT	p.S633F	USP26_uc011mvf.1_Missense_Mutation_p.S633F	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	633					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ATTTGGTTTAGAATTTTTTCC	0.398													12	2					0	0	0.00185496	0	0
USP26	83844	broad.mit.edu	37	X	132161704	132161704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:132161704C>T	uc010nrm.1	-	6	1015	c.545G>A	c.(544-546)AGA>AAA	p.R182K	USP26_uc011mvf.1_Missense_Mutation_p.R182K	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	182					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TGAGAGCATTCTTTTCCTCTT	0.403													22	3					0	0	0.000720815	0	0
PHF6	84295	broad.mit.edu	37	X	133551252	133551252	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:133551252C>T	uc004exj.2	+	9	1090	c.888C>T	c.(886-888)GCC>GCT	p.A296A	PHF6_uc004exk.2_Silent_p.A296A|PHF6_uc011mvk.1_Silent_p.A262A|PHF6_uc004exi.2_Silent_p.A297A	NM_001015877	NP_001015877	Q8IWS0	PHF6_HUMAN	PHD finger protein 6 isoform 1	296	PHD-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AAATAAAAGCCTGTGTTAAGA	0.353													37	10					0	0	0.00128727	0	0
GABRE	2564	broad.mit.edu	37	X	151124195	151124195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:151124195C>T	uc004ffi.2	-	7	976	c.922G>A	c.(922-924)GCC>ACC	p.A308T	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	308					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GAGGTCCGGGCTGGAGCAGAC	0.527													43	9					0	0	0.000680045	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303157	151303157	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:151303157C>T	uc004ffk.2	-	5	1344	c.936G>A	c.(934-936)CTG>CTA	p.L312L	MAGEA10_uc004ffl.2_Silent_p.L312L	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	312	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAAAATTTCAGGAGACTCA	0.502													60	7					0	0	0.000781405	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303172	151303172	+	Silent	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:151303172C>T	uc004ffk.2	-	5	1329	c.921G>A	c.(919-921)AGG>AGA	p.R307R	MAGEA10_uc004ffl.2_Silent_p.R307R	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	307	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GACTCATCTTCCTAATTTCAG	0.498													57	8					0	0	0.000781405	0	0
ZNF275	10838	broad.mit.edu	37	X	152612510	152612510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:152612510C>T	uc004fhg.1	+	4	544	c.367C>T	c.(367-369)CAC>TAC	p.H123Y	ZNF275_uc011mym.1_Missense_Mutation_p.H123Y|ZNF275_uc011myn.1_Missense_Mutation_p.H60Y			A6NFS0	A6NFS0_HUMAN	SubName: Full=cDNA FLJ16723 fis, clone UTERU3004418, highly similar to Zinc finger protein 275; SubName: Full=Putative uncharacterized protein ZNF275;	123						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCAGAGAGTCCACAGTGAGGA	0.547													10	2					0	0	0.000978159	0	0
PLXNB3	5365	broad.mit.edu	37	X	153033717	153033717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrX:153033717C>T	uc004fii.2	+	4	1274	c.1100C>T	c.(1099-1101)TCG>TTG	p.S367L	PLXNB3_uc011mzb.1_Intron|PLXNB3_uc011mzc.1_Missense_Mutation_p.S49L|PLXNB3_uc010nuk.2_Missense_Mutation_p.S390L|PLXNB3_uc011mzd.1_Missense_Mutation_p.S6L	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	367	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					TCCCCCGAGTCGTACCCCTGT	0.687													19	5					0	0	0.00278032	0	0
USP9Y	8287	broad.mit.edu	37	Y	14848359	14848359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chrY:14848359C>T	uc004fst.1	+	10	1985	c.1040C>T	c.(1039-1041)TCC>TTC	p.S347F	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	347					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						TTGCAAATTTCCTCTTTTAAT	0.294													16	1					0	0	0.000566183	0	0
THAP3	90326	broad.mit.edu	37	1	6693007	6693008	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr1:6693007_6693008delAG	uc001aoc.2	+	6	749_750	c.590_591delAG	c.(589-591)AAGfs	p.K197fs	THAP3_uc001aod.2_Frame_Shift_Del_p.K196fs|THAP3_uc001aoe.1_Intron			Q8WTV1	THAP3_HUMAN	RecName: Full=THAP domain-containing protein 3;	197							DNA binding|metal ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CTCACTCTGAAGGAAAATGAAA	0.554													16	32	---	---	---	---					
MALAT1	378938	broad.mit.edu	37	11	65269783	65269784	+	RNA	INS	-	T	T			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr11:65269783_65269784insT	uc010roh.1	+	1		c.4551_4552insT			uc001ody.2_RNA|MALAT1_uc001odz.2_RNA	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TAATTTAAAACTACTATAGAAA	0.312													13	28	---	---	---	---					
ZC3H4	23211	broad.mit.edu	37	19	47589699	47589713	+	In_Frame_Del	DEL	CCTCTGCCCCTGCCT	-	-	rs653615		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr19:47589699_47589713delCCTCTGCCCCTGCCT	uc002pga.3	-	6	836_850	c.798_812delAGGCAGGGGCAGAGG	c.(796-813)CGAGGCAGGGGCAGAGGC>CGC	p.GRGRG267del	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	267_271	Gly-rich.						nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		TCCCATAGAGCCTCTGCCCCTGCCTCGGCTGCCCC	0.665													21	41	---	---	---	---					
MYT1L	23040	broad.mit.edu	37	2	1947053	1947053	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:1947053delT	uc002qxe.2	-	9	1033	c.206delA	c.(205-207)CAGfs	p.Q69fs	MYT1L_uc002qxd.2_Frame_Shift_Del_p.Q69fs	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	69					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		AGCAGGTTCCTGGGGCTGTTT	0.388													2	4	---	---	---	---					
ARHGAP15	55843	broad.mit.edu	37	2	144461039	144461040	+	Frame_Shift_Ins	INS	-	ACTC	ACTC			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr2:144461039_144461040insACTC	uc002tvm.3	+	13	1341_1342	c.1190_1191insACTC	c.(1189-1191)AAAfs	p.K397fs	ARHGAP15_uc002tvn.2_Frame_Shift_Ins_p.K163fs	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	397	Rho-GAP.				regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		CTTGTACAAAAACTCCCTCCGC	0.342													10	20	---	---	---	---					
MITF	4286	broad.mit.edu	37	3	69986995	69986997	+	In_Frame_Del	DEL	CCA	-	-			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr3:69986995_69986997delCCA	uc003dnz.2	+	3	493_495	c.377_379delCCA	c.(376-381)CCCACC>CCC	p.T127del	MITF_uc011bgb.1_In_Frame_Del_p.T75del|MITF_uc003doa.2_In_Frame_Del_p.T126del|MITF_uc003dob.2_In_Frame_Del_p.T111del|MITF_uc003dod.2_In_Frame_Del_p.T102del|MITF_uc003doe.2_In_Frame_Del_p.T20del|MITF_uc003dof.2_In_Frame_Del_p.T20del	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	127					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		CTCGAAAACCCCACCAAGTACCA	0.488			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						11	32	---	---	---	---					
PCDH1	5097	broad.mit.edu	37	5	141233797	141233797	+	Frame_Shift_Del	DEL	G	-	-	rs145557825		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr5:141233797delG	uc003llp.2	-	5	3641	c.3524delC	c.(3523-3525)CCGfs	p.P1175fs		NM_032420	NP_115796	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 2 precursor	Error:Variant_position_missing_in_Q08174_after_alignment					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		CCGGTCTTCCGGGGGGCTGGG	0.672													7	20	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149476670	149476671	+	Frame_Shift_Ins	INS	-	A	A	rs57553723		TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr7:149476670_149476671insA	uc010lpk.2	+	10	1120_1121	c.1120_1121insA	c.(1120-1122)CTGfs	p.L374fs	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	374	VWFD 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGACAGCCCCTGGGGCTCATA	0.619													3	4	---	---	---	---					
CEP110	11064	broad.mit.edu	37	9	123860722	123860722	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AC-06A-11D-A196-08	TCGA-EE-A3AC-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	883d623b-c427-4444-9ee3-66d18648130f	f8f00311-8db5-4187-bcb8-5054d9fbdac3	g.chr9:123860722delA	uc004bkx.1	+	5	711	c.680delA	c.(679-681)GAAfs	p.E227fs	CEP110_uc004bkw.2_Frame_Shift_Del_p.E227fs	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	227					cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						ATCCTAGTTGAAAATCCAGTT	0.368													22	72	---	---	---	---					
