Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MIIP	60672	broad.mit.edu	37	1	12091449	12091449	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:12091449C>T	uc001ato.1	+	9	1249	c.1069C>T	c.(1069-1071)CCT>TCT	p.P357S		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	357										ovary(1)	1						CACCAGCAGCCCTTTTCACCC	0.647000													43	4					0	0	0.003610	0	0
FNDC5	252995	broad.mit.edu	37	1	33333430	33333430	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:33333430C>G	uc001bwg.2	-	4	413	c.198G>C	c.(196-198)ATG>ATC	p.M66I	FNDC5_uc001bwf.1_Missense_Mutation_p.M66I	NM_153756	NP_715637	Q8NAU1	FNDC5_HUMAN	fibronectin type III domain containing 5	125	Extracellular (Potential).					integral to membrane|peroxisomal membrane		p.M66L(1)		ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CCATCTCTTTCATGGTTACCT	0.562000													14	27					0	0	0.002450	0	0
EPHA10	284656	broad.mit.edu	37	1	38227533	38227533	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:38227533C>T	uc009vvi.2	-	3	480	c.394G>A	c.(394-396)GAA>AAA	p.E132K	EPHA10_uc001cbw.3_Missense_Mutation_p.E132K	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	132	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GCCTCAGTTTCCAGGTAGTAG	0.657000													53	65					0	0	0.003610	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049071	42049071	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:42049071C>T	uc001cgz.3	-	4	2611	c.1398G>A	c.(1396-1398)ACG>ACA	p.T466T	HIVEP3_uc001cha.3_Silent_p.T466T|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	466	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGATGAGCTTCGTGATGTGCT	0.637000													29	37					0	0	0.001512	0	0
C1orf168	199920	broad.mit.edu	37	1	57189292	57189292	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:57189292C>G	uc001cym.3	-	17	2349	c.1943G>C	c.(1942-1944)AGA>ACA	p.R648T	C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	648										ovary(3)|skin(2)	5						TTTTTCTTCTCTTTTCATTCT	0.308000													13	11					0	0	0.001368	0	0
DEPDC1	55635	broad.mit.edu	37	1	68943575	68943575	+	Silent	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:68943575A>G	uc001dem.3	-	11	2310	c.2193T>C	c.(2191-2193)GAT>GAC	p.D731D	DEPDC1_uc001dej.3_Silent_p.D99D|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Silent_p.D447D	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	731					intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		CTTTTTGCTCATCAAACTCCT	0.338000													5	208					0	0	0.001168	0	0
C1orf173	127254	broad.mit.edu	37	1	75038347	75038347	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:75038347C>T	uc001dgg.2	-	14	3266	c.3047G>A	c.(3046-3048)GGA>GAA	p.G1016E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1016	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGCAAGGCTTCCTTCCTCAGG	0.507000													39	43					0	0	0.004878	0	0
GBP2	2634	broad.mit.edu	37	1	89586829	89586829	+	Silent	SNP	C	T	T	rs147250118	byFrequency	TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:89586829C>T	uc001dmz.1	-	3	586	c.315G>A	c.(313-315)GAG>GAA	p.E105E	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	105					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		TTTTTACCTTCTCTATATCTC	0.413000													24	34					0	0	0.002299	0	0
C1orf103	55791	broad.mit.edu	37	1	111494240	111494240	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:111494240G>A	uc001eaa.2	-	2	1522	c.1266C>T	c.(1264-1266)TCC>TCT	p.S422S	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	422					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		TCTCCATCTGGGAAGATTTAC	0.408000													90	96					0	0	0.003610	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			57	77					2.40265e-35	4.96714e-35	0.003610	1	0
C1orf61	10485	broad.mit.edu	37	1	156386582	156386582	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:156386582A>T	uc001fou.1	-	3	167	c.50T>A	c.(49-51)CTT>CAT	p.L17H	C1orf61_uc001fov.1_Intron|C1orf61_uc001fow.1_Intron|C1orf61_uc001fox.1_Intron|C1orf61_uc001foy.1_Intron	NM_006365	NP_006356	Q13536	CROC4_HUMAN	transcriptional activator of the c-fos promoter	17						nucleus				skin(1)	1	Hepatocellular(266;0.158)					AAGCTGGAAAAGGAGGAAGTT	0.463000													61	82					0	0	0.003610	0	0
PEAR1	375033	broad.mit.edu	37	1	156873748	156873748	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:156873748C>T	uc001fqj.1	+	2	146	c.30C>T	c.(28-30)CTC>CTT	p.L10L	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	10						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCTCCTTCTCCTGGCTGTGG	0.647000													55	78					0	0	0.003610	0	0
FCRL3	115352	broad.mit.edu	37	1	157660321	157660321	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:157660321G>A	uc001frb.2	-	9	1706	c.1414C>T	c.(1414-1416)CCG>TCG	p.P472S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P472S|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.P198S|FCRL3_uc001frc.1_Missense_Mutation_p.P472S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	472	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CGAGACACCGGAACTGAGGGA	0.473000													30	36					0	0	0.001786	0	0
SLAMF8	56833	broad.mit.edu	37	1	159804974	159804974	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:159804974G>A	uc001fue.3	+	5	992	c.782G>A	c.(781-783)GGG>GAG	p.G261E	C1orf204_uc001fuf.1_RNA|C1orf204_uc001fug.1_3'UTR	NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	261	Cytoplasmic (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					TCCTTACCAGGGAAAAAGAAA	0.498000													18	33					0	0	0.007413	0	0
LRRC52	440699	broad.mit.edu	37	1	165513978	165513978	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:165513978A>C	uc001gde.2	+	1	501	c.445A>C	c.(445-447)ACC>CCC	p.T149P	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	149	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					CTTTGCCAACACCACCTCTTT	0.522000													83	94					0	0	0.003610	0	0
ADCY10	55811	broad.mit.edu	37	1	167874300	167874300	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:167874300C>T	uc001ger.2	-	2	377	c.79G>A	c.(79-81)GGA>AGA	p.G27R	ADCY10_uc009wvk.2_5'UTR|ADCY10_uc010plj.1_Intron|ADCY10_uc009wvl.2_Missense_Mutation_p.G27R|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	27					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						GAGAAATGTCCATAGACAATG	0.413000													38	54					0	0	0.004289	0	0
SLC19A2	10560	broad.mit.edu	37	1	169435090	169435090	+	Silent	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:169435090T>C	uc001gge.3	-	6	1695	c.1491A>G	c.(1489-1491)TCA>TCG	p.S497S	SLC19A2_uc001ggf.3_Silent_p.S296S	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	497	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					CAGTATATTATGAAGTGGTTA	0.403000													4	86					0	0	0.000602	0	0
ASTN1	460	broad.mit.edu	37	1	176915229	176915229	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:176915229C>T	uc001glc.2	-	13	2294	c.2082G>A	c.(2080-2082)GTG>GTA	p.V694V	ASTN1_uc001glb.1_Silent_p.V694V|ASTN1_uc001gld.1_Silent_p.V694V|ASTN1_uc009wwx.1_Silent_p.V694V	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	702	EGF-like 3.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AGCGTCCATCCACACCAAGCT	0.517000													38	10					0	0	0.001951	0	0
CFHR2	3080	broad.mit.edu	37	1	196928177	196928177	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:196928177G>A	uc001gtq.1	+	5	857	c.780G>A	c.(778-780)GGG>GGA	p.G260G	CFHR2_uc001gtr.1_Silent_p.G136G	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	260	Sushi 4.					extracellular region				skin(2)|ovary(1)	3						GTCAGAATGGGAAACTGGTAT	0.303000													35	11					0	0	0.004878	0	0
KCNK1	3775	broad.mit.edu	37	1	233807194	233807194	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr1:233807194G>A	uc010pxo.1	+	3	1097	c.929G>A	c.(928-930)GGC>GAC	p.G310D	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	310	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	CAGGCAGCTGGCATGAAAGAG	0.498000													28	33					0	0	0.007291	0	0
PTEN	5728	broad.mit.edu	37	10	89711916	89711916	+	Nonsense_Mutation	SNP	T	A	A	rs104894184		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr10:89711916T>A	uc001kfb.2	+	7	1565	c.534T>A	c.(532-534)TAT>TAA	p.Y178*		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	178	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.V166fs*17(3)|p.?(3)|p.G165fs*9(3)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.Y178*(1)|p.G165_K342del(1)|p.Y177fs*1(1)|p.G165_*404del(1)|p.V175fs*3(1)|p.Y178fs*5(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		TGTATTATTATAGCTACCTGT	0.368000		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			6	57					0	0	0.001168	0	0
GBF1	8729	broad.mit.edu	37	10	104120095	104120095	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr10:104120095C>T	uc001kux.1	+	12	1572	c.1332C>T	c.(1330-1332)GCC>GCT	p.A444A	GBF1_uc001kuw.2_3'UTR|GBF1_uc001kuy.1_Silent_p.A444A|GBF1_uc001kuz.1_Silent_p.A445A	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	444					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CCCCTGTAGCCCAGTGCCAGA	0.527000													70	13					0	0	0.003610	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													7	55					0	0	0.001984	0	0
OR51L1	119682	broad.mit.edu	37	11	5021013	5021013	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:5021013G>A	uc010qyu.1	+	1	801	c.801G>A	c.(799-801)GGG>GGA	p.G267G		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCGCTTTGGGAAGCATCTGT	0.463000													14	39					0	0	0.001855	0	0
ASCL3	56676	broad.mit.edu	37	11	8959256	8959256	+	Silent	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:8959256A>G	uc001mhd.1	-	2	513	c.453T>C	c.(451-453)CCT>CCC	p.P151P		NM_020646	NP_065697	Q9NQ33	ASCL3_HUMAN	ASCL3	150					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleolus	DNA binding				0				Epithelial(150;1.48e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0228)		CAGCTTTATCAGGGTACAGAA	0.463000													4	114					0	0	0.000602	0	0
OR4A5	81318	broad.mit.edu	37	11	51411646	51411646	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:51411646G>A	uc001nhi.1	-	1	750	c.750C>T	c.(748-750)CCC>CCT	p.P250P		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TGAAAATACAGGGTACAAAAA	0.393000													18	30					0	0	0.006122	0	0
OR4S2	219431	broad.mit.edu	37	11	55419000	55419000	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:55419000G>A	uc001nhs.1	+	1	621	c.621G>A	c.(619-621)GGG>GGA	p.G207G		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TTGCTCTGGGGAGTTTTGTTA	0.483000													64	11					0	0	0.003610	0	0
NOX4	50507	broad.mit.edu	37	11	89069079	89069079	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:89069079G>A	uc001pct.2	-	17	1789	c.1550C>T	c.(1549-1551)TCA>TTA	p.S517L	NOX4_uc009yvr.2_Missense_Mutation_p.S492L|NOX4_uc001pcu.2_Missense_Mutation_p.S443L|NOX4_uc001pcw.2_Missense_Mutation_p.S210L|NOX4_uc001pcx.2_Missense_Mutation_p.S170L|NOX4_uc001pcv.2_Missense_Mutation_p.S477L|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Missense_Mutation_p.S330L|NOX4_uc009yvp.2_Missense_Mutation_p.S281L|NOX4_uc010rtv.1_Missense_Mutation_p.S453L|NOX4_uc009yvq.2_Missense_Mutation_p.S493L	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	517	Cytoplasmic (Potential).|Mediates interaction with TLR4.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AAACAGTCTTGAATTCAGTGC	0.323000													30	4					0	0	0.003755	0	0
ROBO3	64221	broad.mit.edu	37	11	124745065	124745065	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:124745065C>T	uc001qbc.2	+	14	2324	c.2132C>T	c.(2131-2133)CCT>CTT	p.P711L	ROBO3_uc010saq.1_5'Flank|ROBO3_uc001qbd.2_5'Flank|ROBO3_uc010sar.1_5'Flank|ROBO3_uc001qbe.2_5'Flank|ROBO3_uc001qbf.1_5'Flank	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	711	Fibronectin type-III 2.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		GTAGCAGGCCCTGAGGGAGGA	0.592000													18	3					0	0	0.006122	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662562	662562	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:662562C>T	uc001qii.1	+	14	1473	c.1473C>T	c.(1471-1473)TCC>TCT	p.S491S	B4GALNT3_uc001qij.1_Silent_p.S394S|B4GALNT3_uc001qik.1_Silent_p.S40S	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	491	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CCCCCTTCTCCAAGCGGAACT	0.642000													38	54					0	0	0.004289	0	0
C12orf5	57103	broad.mit.edu	37	12	4430444	4430444	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:4430444C>T	uc001qmp.2	+	1	86	c.7C>T	c.(7-9)CGC>TGC	p.R3C		NM_020375	NP_065108	Q9NQ88	TIGAR_HUMAN	TP53-induced glycolysis and apoptosis regulator	3						intracellular	fructose-2,6-bisphosphate 2-phosphatase activity			skin(1)	1			all cancers(3;1.15e-07)|Colorectal(7;0.00165)|OV - Ovarian serous cystadenocarcinoma(31;0.00596)|COAD - Colon adenocarcinoma(12;0.0229)|GBM - Glioblastoma multiforme(3;0.0266)|STAD - Stomach adenocarcinoma(119;0.206)			GAACATGGCTCGCTTCGCTCT	0.657000													41	35					0	0	0.003610	0	0
KIAA1467	57613	broad.mit.edu	37	12	13220169	13220169	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:13220169G>A	uc001rbi.2	+	7	1104	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	361						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		TCTGCAGATAGAAGAGCCAGA	0.483000													40	61					0	0	0.006230	0	0
ART4	420	broad.mit.edu	37	12	14994061	14994061	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:14994061G>A	uc001rcl.1	-	2	537	c.171C>T	c.(169-171)TTC>TTT	p.F57F	ART4_uc009zid.1_RNA|ART4_uc009zie.1_Intron|ART4_uc001rcm.1_Silent_p.F57F	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	57					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						AACCTGGTGCGAAGTCGAAGT	0.373000													26	48					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	12	31298405	31298405	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:31298405G>A	uc010sjy.1	-	12	1580	c.1580C>T	c.(1579-1581)CCC>CTC	p.P527L						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		TTCCCCACTGGGGTGAAGGGT	0.493000													13	13					0	0	0.004007	0	0
MLL2	8085	broad.mit.edu	37	12	49435296	49435296	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:49435296T>C	uc001rta.3	-	31	6257	c.6257A>G	c.(6256-6258)AAG>AGG	p.K2086R		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2086					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTTGGTCTGCTTGTTGATCTG	0.667000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			29	82					0	0	0.001786	0	0
AGAP2	116986	broad.mit.edu	37	12	58121793	58121793	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:58121793C>A	uc001spq.2	-	15	2693	c.2693G>T	c.(2692-2694)CGG>CTG	p.R898L	AGAP2_uc001spo.1_5'Flank|AGAP2_uc001spp.2_Missense_Mutation_p.R897L|AGAP2_uc001spr.2_Missense_Mutation_p.R542L|LOC100130776_uc001sps.3_3'UTR	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	898	PH.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						CCAGGCATCCCGCTCCTCAAA	0.562000													8	321					0.00448238	0.0088102	0.004482	1	0
C12orf63	374467	broad.mit.edu	37	12	97137677	97137677	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:97137677C>T	uc001tet.1	+	21	2899	c.2821C>T	c.(2821-2823)CTA>TTA	p.L941L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	941										skin(6)|ovary(1)	7						TCATAGCATTCTAACTGAACA	0.383000													28	9					0	0	0.001786	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895678	24895678	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr13:24895678C>T	uc001upj.2	+	4	835	c.774C>T	c.(772-774)TTC>TTT	p.F258F	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	258	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		TCACTGTTTTCTCCAGAAATG	0.448000													56	32					0	0	0.003610	0	0
LOC374491	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	G	G	rs3874227	by1000genomes	TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr13:25161397C>G	uc001upm.2	+	8		c.921C>G			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TGAAACATCTCTACAACTGGA	0.343000													3	23					0	0	0.004672	0	0
RNF17	56163	broad.mit.edu	37	13	25453355	25453355	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr13:25453355T>C	uc001upr.2	+	35	4845	c.4804T>C	c.(4804-4806)TAT>CAT	p.Y1602H	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.Y1598H|RNF17_uc001ups.2_Missense_Mutation_p.Y1541H|RNF17_uc010aac.2_Missense_Mutation_p.Y794H|RNF17_uc010aad.2_Missense_Mutation_p.Y612H	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1602					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AGTGACATTATATGACGATGA	0.393000													3	22					0	0	0.004672	0	0
TRPC4	7223	broad.mit.edu	37	13	38266172	38266172	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr13:38266172T>C	uc001uws.2	-	4	1433	c.1198A>G	c.(1198-1200)ACC>GCC	p.T400A	TRPC4_uc010abv.2_Intron|TRPC4_uc001uwt.2_Missense_Mutation_p.T400A|TRPC4_uc010tey.1_Missense_Mutation_p.T400A|TRPC4_uc010abw.2_Missense_Mutation_p.T227A|TRPC4_uc010abx.2_Missense_Mutation_p.T400A|TRPC4_uc010aby.2_Missense_Mutation_p.T400A	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	400	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCGACGATGGTTGGTGGTGGA	0.453000													36	34					0	0	0.006230	0	0
NDFIP2	54602	broad.mit.edu	37	13	80125153	80125153	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr13:80125153C>T	uc001vlf.2	+	7	989	c.909C>T	c.(907-909)GGC>GGT	p.G303G	NDFIP2_uc010tib.1_Silent_p.G283G|NDFIP2_uc001vlg.2_RNA	NM_019080	NP_061953	Q9NV92	NFIP2_HUMAN	Nedd4 family interacting protein 2 isoform 1	303	Helical; (Potential).				negative regulation of gene expression|negative regulation of protein transport|negative regulation of transporter activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein ubiquitination	endoplasmic reticulum|Golgi membrane|integral to membrane|mitochondrion|multivesicular body membrane|perinuclear region of cytoplasm	signal transducer activity|WW domain binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.205)		GBM - Glioblastoma multiforme(99;0.0196)		CCTTCTCAGGCCTGCTCCTTT	0.323000													67	118					0	0	0.003610	0	0
OR4N2	390429	broad.mit.edu	37	14	20295728	20295728	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:20295728G>A	uc010tkv.1	+	1	121	c.121G>A	c.(121-123)GGA>AGA	p.G41R		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CATCCTCCCTGGAAATTTTCT	0.443000													111	254					0	0	0.003610	0	0
OR4K2	390431	broad.mit.edu	37	14	20345295	20345295	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:20345295G>T	uc001vwh.1	+	1	869	c.869G>T	c.(868-870)AGG>ATG	p.R290M		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TATACTTTGAGGAATCAAGAA	0.358000													26	74					1.2476e-16	2.53975e-16	0.006320	1	0
MYH7	4625	broad.mit.edu	37	14	23891495	23891495	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:23891495C>T	uc001wjx.2	-	25	3245	c.3139G>A	c.(3139-3141)GAC>AAC	p.D1047N		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1047	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CGCTCCAGGTCCATGCGCACC	0.577000													15	30					0	0	0.004007	0	0
AKAP6	9472	broad.mit.edu	37	14	33015958	33015958	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:33015958C>T	uc001wrq.2	+	4	2269	c.2099C>T	c.(2098-2100)TCA>TTA	p.S700L	AKAP6_uc010aml.2_Missense_Mutation_p.S697L	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	700					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TCTCCAAGCTCATCTAGTGAC	0.468000													28	34					0	0	0.006320	0	0
ACTN1	87	broad.mit.edu	37	14	69369277	69369277	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:69369277T>C	uc001xkl.2	-	8	989	c.679A>G	c.(679-681)ATC>GTC	p.I227V	ACTN1_uc010ttb.1_Missense_Mutation_p.I162V|ACTN1_uc001xkm.2_Missense_Mutation_p.I227V|ACTN1_uc001xkn.2_Missense_Mutation_p.I227V|ACTN1_uc001xko.1_Missense_Mutation_p.I162V|ACTN1_uc010ttd.1_Missense_Mutation_p.I206V	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	227	CH 2.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		GTTCCAACGATGTCTGTCAAG	0.498000													5	101					0	0	0.000602	0	0
NRXN3	9369	broad.mit.edu	37	14	79181157	79181157	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:79181157C>T	uc001xun.2	+	5	1091	c.600C>T	c.(598-600)ATC>ATT	p.I200I	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.I334I	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	573	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AGAGCGAGATCCTGGACCTGG	0.587000													64	68					0	0	0.003610	0	0
FLRT2	23768	broad.mit.edu	37	14	86089781	86089781	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:86089781C>T	uc001xvr.2	+	2	2690	c.1923C>T	c.(1921-1923)ATC>ATT	p.I641I	FLRT2_uc010atd.2_Silent_p.I641I	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	641	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		ACTGCCATATCCCCAACAACA	0.493000													140	191					0	0	0.003610	0	0
SERPINA13	388007	broad.mit.edu	37	14	95111300	95111300	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr14:95111300C>T	uc001ydt.2	+	4	1120	c.1032C>T	c.(1030-1032)CTC>CTT	p.L344L		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						GCAGAGAACTCGATTTCCACT	0.557000													13	4					0	0	0.003163	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30936875	30936875	+	RNA	SNP	C	G	G	rs2648148	by1000genomes	TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:30936875C>G	uc010azv.1	+	10		c.1096C>G			ARHGAP11B_uc001zeu.2_RNA			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		TAAATTTGATCCAAAAATATT	0.318000													3	63					0	0	0.004672	0	0
OTUD7A	161725	broad.mit.edu	37	15	31851373	31851373	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:31851373C>T	uc001zfq.2	-	3	442	c.349G>A	c.(349-351)GGG>AGG	p.G117R	OTUD7A_uc001zfr.2_Missense_Mutation_p.G117R|OTUD7A_uc001zfs.1_RNA|OTUD7A_uc010baa.1_Missense_Mutation_p.G117R	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	117						cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		TGGGAAATCCCCCGGGAAAGC	0.532000													3	28					0	0	0.000248	0	0
RHOV	171177	broad.mit.edu	37	15	41165519	41165519	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:41165519C>T	uc001znd.2	-	3	598	c.448G>A	c.(448-450)GAT>AAT	p.D150N		NM_133639	NP_598378	Q96L33	RHOV_HUMAN	ras homolog gene family, member V	150					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome membrane|plasma membrane	GTP binding|metal ion binding				0		all_cancers(109;1.42e-13)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.58e-05)|COAD - Colon adenocarcinoma(120;0.149)|BRCA - Breast invasive adenocarcinoma(123;0.163)		ACGTTGACATCGTCCCTCAGG	0.642000													60	47					0	0	0.003610	0	0
ZFP106	64397	broad.mit.edu	37	15	42742856	42742856	+	Silent	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:42742856T>C	uc001zpw.2	-	2	1880	c.1545A>G	c.(1543-1545)AAA>AAG	p.K515K	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Silent_p.K298K|ZFP106_uc001zpy.1_Silent_p.K538K	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	515						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TTTTATTCCCTTTTAAAACAT	0.413000													3	132					0	0	0.004672	0	0
HIGD2B	123346	broad.mit.edu	37	15	72972411	72972411	+	RNA	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:72972411C>T	uc002ava.2	-	2		c.456G>A				NR_002780				Homo sapiens HIG1 domain family, member 2B pseudogene, mRNA (cDNA clone IMAGE:5742106).												0						TCATATTCCTCATAGATTCCC	0.453000													5	9					0	0	0.000602	0	0
MESDC2	23184	broad.mit.edu	37	15	81271781	81271781	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:81271781G>A	uc002bfy.1	-	3	557	c.484C>T	c.(484-486)CGC>TGC	p.R162C	MESDC2_uc002bfx.2_RNA|MESDC2_uc010uno.1_Intron	NM_015154	NP_055969	Q14696	MESD_HUMAN	mesoderm development candidate 2	162	Chaperone domain (By similarity).				mesoderm development|protein folding|Wnt receptor signaling pathway	endoplasmic reticulum					0						CTCCCATCGCGAAGCATGAAG	0.547000													17	28					0	0	0.006122	0	0
MFGE8	4240	broad.mit.edu	37	15	89449881	89449881	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:89449881G>A	uc002bng.3	-	4	629	c.516C>T	c.(514-516)ATC>ATT	p.I172I	MFGE8_uc002bnf.3_Silent_p.I60I|MFGE8_uc002bnh.3_Silent_p.I172I|MFGE8_uc010bnn.2_Silent_p.I164I|MFGE8_uc010upq.1_Silent_p.I128I|MFGE8_uc010upr.1_Silent_p.I172I|MFGE8_uc010bno.2_Silent_p.I128I	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	172	F5/8 type C 1.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					TAACATCATGGATGAAATCGA	0.522000													45	56					0	0	0.003610	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92977491	92977491	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:92977491T>G	uc002bra.2	+	3	331	c.176T>G	c.(175-177)ATA>AGA	p.I59R	ST8SIA2_uc002brb.2_Missense_Mutation_p.I38R	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	59	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			GAAGTTGTAATAAACGGCTCC	0.448000													6	119					0	0	0.003080	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1798293	1798294	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:1798293_1798294CC>AA	uc002cmk.2	+	7	1160_1161	c.1040_1041CC>AA	c.(1039-1041)TCC>TAA	p.S347*	MAPK8IP3_uc002cml.2_Nonsense_Mutation_p.S347*|MAPK8IP3_uc010uvl.1_Nonsense_Mutation_p.S348*	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	347					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						ATTATTGACTCCACGCCAGAGC	0.609000													8	38					0	0	0.004672	0	0
CPPED1	55313	broad.mit.edu	37	16	12758963	12758963	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:12758963A>G	uc002dca.3	-	4	836	c.725T>C	c.(724-726)GTC>GCC	p.V242A	CPPED1_uc002dcb.3_Missense_Mutation_p.V100A|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	242							hydrolase activity|metal ion binding				0						TGAGAACACGACTTTGACACC	0.517000													6	22					0	0	0.006214	0	0
ABCC1	4363	broad.mit.edu	37	16	16205272	16205272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:16205272G>A	uc010bvi.2	+	22	3087	c.2912G>A	c.(2911-2913)GGA>GAA	p.G971E	ABCC1_uc010bvj.2_Missense_Mutation_p.G912E|ABCC1_uc010bvk.2_Missense_Mutation_p.G915E|ABCC1_uc010bvl.2_Missense_Mutation_p.G971E|ABCC1_uc010bvm.2_Missense_Mutation_p.G856E|ABCC1_uc002del.3_Missense_Mutation_p.G865E	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	971	Helical; Name=12.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AAGGCCATCGGACTCTTCATC	0.473000													82	109					0	0	0.003610	0	0
GP2	2813	broad.mit.edu	37	16	20329728	20329728	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:20329728C>T	uc002dgv.2	-	8	1124	c.1041G>A	c.(1039-1041)GGG>GGA	p.G347G	GP2_uc002dgw.2_Silent_p.G344G|GP2_uc002dgx.2_Silent_p.G200G|GP2_uc002dgy.2_Silent_p.G197G	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	347	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						ACTCTCCATTCCCGTCCACAC	0.473000													91	101					0	0	0.003610	0	0
MIR1826	100302162	broad.mit.edu	37	16	33965518	33965518	+	RNA	SNP	G	A	A	rs483066		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:33965518G>A	hsa-mir-1826|MI0008194	+			c.11G>A																				0						ATTGATCATCGACACTTCGAA	0.557000													12	16					0	0	0.001855	0	0
CES1	1066	broad.mit.edu	37	16	55857517	55857517	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:55857517C>T	uc002eim.2	-	4	589	c.481G>A	c.(481-483)GAA>AAA	p.E161K	CES1_uc002eil.2_Missense_Mutation_p.E162K|CES1_uc002ein.2_Missense_Mutation_p.E161K	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	161					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	ACCACGTTTTCATGGGCAGCA	0.567000													16	68					0	0	0.007413	0	0
SNTB2	6645	broad.mit.edu	37	16	69294068	69294068	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:69294068C>T	uc002ewu.2	+	3	930	c.910C>T	c.(910-912)CCA>TCA	p.P304S		NM_006750	NP_006741	Q13425	SNTB2_HUMAN	basic beta 2 syntrophin	304						cell junction|dystrophin-associated glycoprotein complex|membrane fraction|microtubule|transport vesicle membrane	actin binding|calmodulin binding|protein binding				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.208)		GGCTCTCCTCCCACAGGTGTT	0.527000													40	56					0	0	0.006230	0	0
PMFBP1	83449	broad.mit.edu	37	16	72173222	72173222	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:72173222G>A	uc002fcc.3	-	7	1056	c.884C>T	c.(883-885)CCT>CTT	p.P295L	PMFBP1_uc002fcd.2_Missense_Mutation_p.P295L|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.P150L	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	295										ovary(2)	2		Ovarian(137;0.179)				TGAGGAGCTAGGAGGGTATCT	0.468000													32	38					0	0	0.004289	0	0
CDH15	1013	broad.mit.edu	37	16	89260307	89260307	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:89260307G>A	uc002fmt.2	+	13	2214	c.2137G>A	c.(2137-2139)GAC>AAC	p.D713N		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	713	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GGACATCGCCGACTTCATCAA	0.483000													14	20					0	0	0.002450	0	0
ANKRD11	29123	broad.mit.edu	37	16	89357183	89357183	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr16:89357183G>A	uc002fmx.1	-	6	912	c.451C>T	c.(451-453)CCC>TCC	p.P151S	ANKRD11_uc002fmy.1_Missense_Mutation_p.P151S|ANKRD11_uc002fnc.1_Missense_Mutation_p.P151S|ANKRD11_uc002fnd.2_Missense_Mutation_p.P117S|ANKRD11_uc002fne.2_Missense_Mutation_p.P117S|ANKRD11_uc002fnb.1_Missense_Mutation_p.P108S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	151						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GCAGAGTTGGGCGTTCCCTTC	0.592000													47	53					0	0	0.003610	0	0
CCDC144A	9720	broad.mit.edu	37	17	16665012	16665012	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr17:16665012G>A	uc002gqk.1	+	13	3722	c.3646G>A	c.(3646-3648)GAA>AAA	p.E1216K	CCDC144A_uc002gql.1_Missense_Mutation_p.E732K|LOC162632_uc010cpj.1_RNA	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	1216	Potential.										0						AAAATTAAACGAAGCCATTCT	0.323000													17	3					0	0	0.005443	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373000													5	171					0	0	0.001168	0	0
SDK2	54549	broad.mit.edu	37	17	71348681	71348681	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr17:71348681C>T	uc010dfm.2	-	41	5689	c.5689G>A	c.(5689-5691)GAC>AAC	p.D1897N	SDK2_uc002jjt.3_Missense_Mutation_p.D1037N|SDK2_uc002jjv.1_RNA	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1897	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						ACCCGGAAGTCATAGCTCACG	0.612000													33	12					0	0	0.003271	0	0
NPC1	4864	broad.mit.edu	37	18	21140301	21140301	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr18:21140301G>A	uc002kum.3	-	6	1049	c.775C>T	c.(775-777)CCC>TCC	p.P259S	NPC1_uc010xaz.1_Missense_Mutation_p.P43S|NPC1_uc010xba.1_Missense_Mutation_p.P104S	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	259	Poly-Pro.				autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ATCGTCCAGGGAGCAGGAGGA	0.537000													26	44					0	0	0.003954	0	0
DSC1	1823	broad.mit.edu	37	18	28714632	28714632	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr18:28714632C>T	uc002kwn.2	-	12	2041	c.1779G>A	c.(1777-1779)CTG>CTA	p.L593L	DSC1_uc002kwm.2_Silent_p.L593L	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	593	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CTACAGGTTTCAGAACAGCAA	0.378000													14	20					0	0	0.003163	0	0
TICAM1	148022	broad.mit.edu	37	19	4817600	4817600	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:4817600G>A	uc002mbi.2	-	2	1041	c.790C>T	c.(790-792)CCA>TCA	p.P264S		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	264	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		AGCTCTGGTGGGCTGGCAATC	0.677000													16	35					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9089213	9089213	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:9089213C>T	uc002mkp.2	-	1	2806	c.2602G>A	c.(2602-2604)GAA>AAA	p.E868K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	868	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCGAAGTTTCCTCTGTTTCT	0.478000													23	32					0	0	0.002299	0	0
EMR3	84658	broad.mit.edu	37	19	14779619	14779619	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:14779619G>A	uc002mzi.3	-	2	219	c.71C>T	c.(70-72)ACC>ATC	p.T24I	EMR3_uc010dzp.2_Missense_Mutation_p.T24I|EMR3_uc010xnv.1_Missense_Mutation_p.T24I	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	24	Extracellular (Potential).|EGF-like 1.				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CTCACTTTTGGTTTTCTGAGT	0.512000													21	44					0	0	0.001882	0	0
SF4	57794	broad.mit.edu	37	19	19427294	19427294	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:19427294G>A	uc002nmh.2	-	2	145	c.143C>T	c.(142-144)GCC>GTC	p.A48V	SF4_uc002nmi.2_5'UTR|SF4_uc002nmj.2_5'UTR|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_RNA	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	48					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						TTCCATTTTGGCTTCAATTTC	0.537000													29	42					0	0	0.001786	0	0
ZNF714	148206	broad.mit.edu	37	19	21300550	21300550	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:21300550G>A	uc002npo.3	+	6	1443	c.1083G>A	c.(1081-1083)ATG>ATA	p.M361I	ZNF714_uc002npl.2_Missense_Mutation_p.M206I|ZNF714_uc010ecp.1_Missense_Mutation_p.M312I|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	361	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACATAAGATGATTCATACTG	0.353000													14	15					0	0	0.001855	0	0
ZNF714	148206	broad.mit.edu	37	19	21300565	21300565	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:21300565G>A	uc002npo.3	+	6	1458	c.1098G>A	c.(1096-1098)GAG>GAA	p.E366E	ZNF714_uc002npl.2_Silent_p.E211E|ZNF714_uc010ecp.1_Silent_p.E317E|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	366					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATACTGGAGAGAAACCCTACA	0.368000													13	15					0	0	0.001855	0	0
ZNF714	148206	broad.mit.edu	37	19	21300715	21300715	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:21300715G>C	uc002npo.3	+	6	1608	c.1248G>C	c.(1246-1248)AAG>AAC	p.K416N	ZNF714_uc002npl.2_Missense_Mutation_p.K261N|ZNF714_uc010ecp.1_Missense_Mutation_p.K367N|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	416	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCAAACATAAGATAATTCATA	0.348000													22	13					0	0	0.001882	0	0
ZNF99	7652	broad.mit.edu	37	19	22939400	22939400	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:22939400G>A	uc010xrh.1	-	7	2771	c.2771C>T	c.(2770-2772)GCT>GTT	p.A924V		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTGCTTAAAAGCTTTGCCACA	0.368000													17	20					0	0	0.006122	0	0
LIPE	3991	broad.mit.edu	37	19	42930801	42930801	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:42930801C>T	uc002otr.2	-	1	778	c.501G>A	c.(499-501)AGG>AGA	p.R167R	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	167					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				CAGATGGCTCCCTTTTGGCTC	0.572000													43	53					0	0	0.003610	0	0
NLRP7	199713	broad.mit.edu	37	19	55451265	55451265	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:55451265C>T	uc002qih.3	-	4	998	c.922G>A	c.(922-924)GAC>AAC	p.D308N	NLRP7_uc002qig.3_Missense_Mutation_p.D308N|NLRP7_uc002qii.3_Missense_Mutation_p.D308N|NLRP7_uc010esk.2_Missense_Mutation_p.D308N|NLRP7_uc010esl.2_Missense_Mutation_p.D336N	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	308	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGCTGGAGGTCCCTCAGTGCC	0.617000													29	22					0	0	0.006320	0	0
NLRP11	204801	broad.mit.edu	37	19	56313004	56313004	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:56313004G>A	uc010ygf.1	-	7	2816	c.2105C>T	c.(2104-2106)TCC>TTC	p.S702F	NLRP11_uc002qlz.2_Missense_Mutation_p.S549F|NLRP11_uc002qmb.2_Missense_Mutation_p.S603F|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	702							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CATATTTAGGGAAATGGACGT	0.463000													44	69					0	0	0.002522	0	0
ZNF544	27300	broad.mit.edu	37	19	58773811	58773811	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:58773811C>T	uc010euo.2	+	7	2313	c.1839C>T	c.(1837-1839)TTC>TTT	p.F613F	ZNF544_uc010yhw.1_RNA|ZNF544_uc010yhx.1_Silent_p.F585F|ZNF544_uc010yhy.1_Silent_p.F585F|ZNF544_uc002qrt.3_Silent_p.F471F|ZNF544_uc002qru.3_Silent_p.F471F|uc002qrx.1_Intron	NM_014480	NP_055295	Q6NX49	ZN544_HUMAN	zinc finger protein 544	613	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		all_cancers(17;4.17e-12)|all_epithelial(17;1.25e-08)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.17)|GBM - Glioblastoma multiforme(193;0.018)		GAAAAGCCTTCAATCGAAGCA	0.453000													45	54					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	2	905366	905366	+	RNA	SNP	A	G	G	rs35926857	by1000genomes	TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:905366A>G	uc010ewg.2	-	1		c.217T>C			uc010ewh.1_Missense_Mutation_p.W194R					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		ATTTCCTCCCAGCCTCCTCGC	0.547000													4	80					0	0	0.004482	0	0
KIF3C	3797	broad.mit.edu	37	2	26178485	26178485	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:26178485C>T	uc002rgu.2	-	3	2352	c.1695G>A	c.(1693-1695)GAG>GAA	p.E565E	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Silent_p.E565E	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	565	Potential.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCATAGTCTCCTCGTCCCGGA	0.592000													7	87					0	0	0.003080	0	0
SLC5A6	8884	broad.mit.edu	37	2	27427751	27427751	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:27427751G>A	uc002rjd.2	-	8	1174	c.783C>T	c.(781-783)TTC>TTT	p.F261F	SLC5A6_uc010eyv.1_Silent_p.F261F	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	261	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	AGACACCCCCGAAGGCCAAGG	0.582000													37	30					0	0	0.006999	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656313	40656313	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:40656313G>A	uc002rrx.2	-	1	1132	c.1108C>T	c.(1108-1110)CGC>TGC	p.R370C	SLC8A1_uc002rry.2_Missense_Mutation_p.R370C|SLC8A1_uc002rrz.2_Missense_Mutation_p.R370C|SLC8A1_uc002rsa.2_Missense_Mutation_p.R370C|SLC8A1_uc002rsd.3_Missense_Mutation_p.R370C|SLC8A1_uc002rsb.1_Missense_Mutation_p.R370C|SLC8A1_uc010fan.1_Missense_Mutation_p.R370C|SLC8A1_uc002rsc.1_Missense_Mutation_p.R370C	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	370	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GTCATGAGGCGAGTAGCTTGA	0.428000													46	63					0	0	0.003610	0	0
BMP10	27302	broad.mit.edu	37	2	69093611	69093611	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:69093611C>T	uc002sez.1	-	2	586	c.427G>A	c.(427-429)GCT>ACT	p.A143T		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	143				A -> T (in Ref. 3; AAH69080).	activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						CTAAGTTCAGCCATGATGACC	0.453000													21	28					0	0	0.001523	0	0
SLC9A4	389015	broad.mit.edu	37	2	103148791	103148791	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:103148791G>A	uc002tbz.3	+	12	2498	c.2041G>A	c.(2041-2043)GAT>AAT	p.D681N		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	681	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TTTCCTAGATGATGACAGCAG	0.443000													42	57					0	0	0.003610	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459952	107459952	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:107459952C>T	uc002tdq.2	-	2	601	c.482G>A	c.(481-483)GGG>GAG	p.G161E	ST6GAL2_uc002tdr.2_Missense_Mutation_p.G161E|ST6GAL2_uc002tds.3_Missense_Mutation_p.G161E	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	161	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGGAAAAGCCCCCTCCCGTGG	0.647000													94	79					0	0	0.003610	0	0
PCDP1	200373	broad.mit.edu	37	2	120388367	120388367	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:120388367C>T	uc002tmb.2	+	20	2098	c.1006C>T	c.(1006-1008)CTT>TTT	p.L336F	PCDP1_uc010yyq.1_Missense_Mutation_p.L466F	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	622						cilium	calmodulin binding				0	Colorectal(110;0.196)					CATCACAGCCCTTCCGAAACA	0.468000													49	46					0	0	0.003610	0	0
GLI2	2736	broad.mit.edu	37	2	121726377	121726377	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:121726377A>G	uc010flp.2	+	5	761	c.731A>G	c.(730-732)GAC>GGC	p.D244G	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Silent_p.G114G|GLI2_uc010flo.1_Missense_Mutation_p.D119G|GLI2_uc002tmw.1_Missense_Mutation_p.D244G	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	244					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCCAGCCTGGACCTGCAGCGG	0.652000													10	76					0	0	0.001368	0	0
XIRP2	129446	broad.mit.edu	37	2	167760325	167760325	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:167760325C>T	uc002udx.2	+	1	351	c.333C>T	c.(331-333)TCC>TCT	p.S111S	XIRP2_uc010fpn.2_Silent_p.S111S|XIRP2_uc010fpo.2_Silent_p.S111S|XIRP2_uc010fpp.2_Silent_p.S111S	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACGCTTTTCCATTGCCCTTG	0.502000													46	37					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179437711	179437711	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:179437711G>A	uc010zfg.1	-	275	65668	c.65444C>T	c.(65443-65445)TCG>TTG	p.S21815L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S15510L|TTN_uc010zfi.1_Missense_Mutation_p.S15443L|TTN_uc010zfj.1_Missense_Mutation_p.S15318L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22742							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATAGTATACGAAGTTGCCTT	0.483000													14	13					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179472337	179472337	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:179472337G>A	uc010zfg.1	-	226	45598	c.45374C>T	c.(45373-45375)CCA>CTA	p.P15125L	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P8820L|TTN_uc010zfi.1_Missense_Mutation_p.P8753L|TTN_uc010zfj.1_Missense_Mutation_p.P8628L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16052							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACCACAGCTGGAATTCTAAG	0.458000													112	145					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179474673	179474673	+	Silent	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:179474673A>G	uc010zfg.1	-	221	43997	c.43773T>C	c.(43771-43773)CCT>CCC	p.P14591P	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.P8286P|TTN_uc010zfi.1_Silent_p.P8219P|TTN_uc010zfj.1_Silent_p.P8094P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15518							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCCGCTGTAGGATTATGAA	0.403000													11	168					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179611213	179611213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:179611213G>A	uc002unb.2	-	46	16138	c.15914C>T	c.(15913-15915)CCT>CTT	p.P5305L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	8823							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGAGGAGAAGGTGTTCTTGA	0.413000													24	30					0	0	0.003330	0	0
TTN	7273	broad.mit.edu	37	2	179628974	179628974	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:179628974G>A	uc010zfg.1	-	43	10268	c.10044C>T	c.(10042-10044)ATC>ATT	p.I3348I	TTN_uc010zfh.1_Silent_p.I3302I|TTN_uc010zfi.1_Silent_p.I3302I|TTN_uc010zfj.1_Silent_p.I3302I|TTN_uc002umz.1_Silent_p.I9I|TTN_uc002unb.2_Silent_p.I3348I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGCGGGGTGATGATGGCAG	0.463000													37	30					0	0	0.003755	0	0
USP37	57695	broad.mit.edu	37	2	219394755	219394755	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:219394755G>A	uc002vie.2	-	10	1240	c.787C>T	c.(787-789)CCT>TCT	p.P263S	USP37_uc010fvs.1_Missense_Mutation_p.P263S|USP37_uc010zkf.1_Missense_Mutation_p.P263S|USP37_uc002vif.2_Missense_Mutation_p.P263S|USP37_uc002vig.2_Missense_Mutation_p.P191S|USP37_uc010zkg.1_Missense_Mutation_p.P263S	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	263					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		GACTGTAAAGGTAAAAGCCCT	0.328000													24	26					0	0	0.007291	0	0
EPHA4	2043	broad.mit.edu	37	2	222308250	222308250	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:222308250G>C	uc002vmq.2	-	10	1893	c.1851C>G	c.(1849-1851)GAC>GAG	p.D617E	EPHA4_uc002vmr.2_Missense_Mutation_p.D617E|EPHA4_uc010zlm.1_Missense_Mutation_p.D558E|EPHA4_uc010zln.1_Missense_Mutation_p.D617E	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	617	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TGCAGGATGCGTCAATTTCTT	0.408000													19	35					0	0	0.001523	0	0
PSMD1	5707	broad.mit.edu	37	2	232035369	232035369	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr2:232035369C>T	uc002vrn.1	+	24	2936	c.2805C>T	c.(2803-2805)ATC>ATT	p.I935I		NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	935					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	GCCCAAAAATCGAGGAGGAGG	0.473000													26	34					0	0	0.003954	0	0
KIF3B	9371	broad.mit.edu	37	20	30918011	30918011	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr20:30918011C>T	uc002wxq.2	+	8	2203	c.2036C>T	c.(2035-2037)GCC>GTC	p.A679V	KIF3B_uc010ztw.1_Missense_Mutation_p.A617V	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	679	Globular.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GAGGGTCCAGCCATTGCCCCC	0.517000													18	23					0	0	0.004990	0	0
PTPRT	11122	broad.mit.edu	37	20	40770637	40770637	+	Silent	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr20:40770637T>C	uc002xkg.2	-	18	2872	c.2688A>G	c.(2686-2688)TTA>TTG	p.L896L	PTPRT_uc010ggj.2_Silent_p.L915L|PTPRT_uc010ggi.2_Silent_p.L99L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	896	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCCCCTCTGGTAAGGCCTAAA	0.498000													3	142					0	0	0.000602	0	0
PTPRT	11122	broad.mit.edu	37	20	41420038	41420038	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr20:41420038G>T	uc002xkg.2	-	3	467	c.283C>A	c.(283-285)CTG>ATG	p.L95M	PTPRT_uc010ggj.2_Missense_Mutation_p.L95M	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	95	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TTCTCCTTCAGGGTTGGCAGG	0.557000													6	29					3.59834e-05	7.14297e-05	0.001168	1	0
CDH26	60437	broad.mit.edu	37	20	58567484	58567484	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr20:58567484C>T	uc002ybe.2	+	10	1635	c.1335C>T	c.(1333-1335)TCC>TCT	p.S445S	CDH26_uc002ybf.1_Silent_p.S25S|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_5'Flank	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	445	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.S445S(1)		ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			ACAAAAACTCCGGAGTGGTCA	0.398000													16	21					0	0	0.006122	0	0
TPTE	7179	broad.mit.edu	37	21	10916393	10916393	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr21:10916393T>C	uc002yip.1	-	20	1621	c.1253A>G	c.(1252-1254)CAC>CGC	p.H418R	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Missense_Mutation_p.H400R|TPTE_uc002yir.1_Missense_Mutation_p.H380R|TPTE_uc010gkv.1_Missense_Mutation_p.H280R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	418	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AATAATGAAGTGTTTTATAAA	0.388000													4	105					0	0	0.001168	0	0
RIPK4	54101	broad.mit.edu	37	21	43162114	43162114	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr21:43162114G>A	uc002yzn.1	-	8	1287	c.1239C>T	c.(1237-1239)GCC>GCT	p.A413A		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	413						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						CGGACACGATGGCATCCACAA	0.627000													97	104					0	0	0.003610	0	0
PI4KA	5297	broad.mit.edu	37	22	21174114	21174114	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:21174114C>G	uc002zsz.3	-	6	661	c.430G>C	c.(430-432)GAG>CAG	p.E144Q	PI4KA_uc010gsq.1_Missense_Mutation_p.E202Q	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	144					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			AGGAGAGACTCTTCCATGTTG	0.468000													63	102					0	0	0.003610	0	0
PI4KA	5297	broad.mit.edu	37	22	21174134	21174134	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:21174134C>G	uc002zsz.3	-	6	641	c.410G>C	c.(409-411)GGG>GCG	p.G137A	PI4KA_uc010gsq.1_Missense_Mutation_p.G195A	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	137					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			GCTGTAACGCCCAAATGCTCG	0.448000													60	97					0	0	0.003610	0	0
TCN2	6948	broad.mit.edu	37	22	31010335	31010335	+	Splice_Site	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:31010335G>A	uc003aip.1	+	4	586	c.428_splice	c.e4-1	p.G143_splice	TCN2_uc003aiq.1_Splice_Site_p.G139_splice|TCN2_uc003air.1_Splice_Site_p.W116_splice	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor						cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTCCCTCTCAGGGCATGATCA	0.612000													15	17					0	0	0.003163	0	0
SFI1	9814	broad.mit.edu	37	22	31942914	31942914	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:31942914C>T	uc003ale.2	+	5	799	c.406C>T	c.(406-408)CAG>TAG	p.Q136*	SFI1_uc003ald.1_Nonsense_Mutation_p.Q112*|SFI1_uc003alf.2_Nonsense_Mutation_p.Q136*|SFI1_uc003alg.2_Nonsense_Mutation_p.Q54*|SFI1_uc011alp.1_Nonsense_Mutation_p.Q54*|SFI1_uc011alq.1_Nonsense_Mutation_p.Q112*|SFI1_uc003alh.2_RNA	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	136					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						GTGGGTTTTCCAGCACGAGTG	0.393000													51	67					0	0	0.003610	0	0
EIF3D	8664	broad.mit.edu	37	22	36922104	36922104	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:36922104G>A	uc003apq.2	-	2	181	c.65C>T	c.(64-66)CCC>CTC	p.P22L	EIF3D_uc003apr.2_Missense_Mutation_p.P22L|EIF3D_uc011ams.1_5'UTR|EIF3D_uc011amt.1_Missense_Mutation_p.P22L	NM_003753	NP_003744	O15371	EIF3D_HUMAN	eukaryotic translation initiation factor 3	22						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			pancreas(1)	1						AAACTGCTCGGGAACCGCACA	0.512000													37	52					0	0	0.004289	0	0
TRIOBP	11078	broad.mit.edu	37	22	38130518	38130518	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:38130518C>T	uc003atr.2	+	9	4446	c.4175C>T	c.(4174-4176)TCC>TTC	p.S1392F	TRIOBP_uc003atu.2_Missense_Mutation_p.S1220F	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1392					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CTCCAGGGGTCCCCGCTGCCC	0.657000													8	19					0	0	0.004482	0	0
SGSM3	27352	broad.mit.edu	37	22	40803207	40803207	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:40803207G>T	uc003ayu.1	+	12	1452	c.1243G>T	c.(1243-1245)GAG>TAG	p.E415*	SGSM3_uc011aos.1_Nonsense_Mutation_p.E348*|SGSM3_uc011aot.1_Nonsense_Mutation_p.E352*|SGSM3_uc010gyd.1_Nonsense_Mutation_p.E458*	NM_015705	NP_056520	Q96HU1	SGSM3_HUMAN	small G protein signaling modulator 3	415	Potential.				cell cycle arrest|Rap protein signal transduction	cytoplasm	Rab GTPase activator activity|Rab GTPase binding			ovary(2)	2						CCTCCTAGGGGAGGATGACCT	0.632000													22	29					9.95505e-16	2.01628e-15	0.002299	1	0
MKL1	57591	broad.mit.edu	37	22	40820310	40820310	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr22:40820310T>C	uc003ayv.1	-	5	584	c.377A>G	c.(376-378)GAG>GGG	p.E126G	MKL1_uc003ayw.1_Missense_Mutation_p.E126G|MKL1_uc010gye.1_Missense_Mutation_p.E126G|MKL1_uc010gyf.1_Missense_Mutation_p.E126G	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	126	Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGCAGGCTGCTCGGGGGATAA	0.602000			T	RBM15	acute megakaryocytic leukemia								4	74					0	0	0.000602	0	0
GRM7	2917	broad.mit.edu	37	3	7456736	7456736	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:7456736A>G	uc003bqm.2	+	5	1334	c.1060A>G	c.(1060-1062)ACA>GCA	p.T354A	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.T354A|GRM7_uc003bql.2_Missense_Mutation_p.T354A|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	354	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TACGTCCCGTACACTTGAAAA	0.398000													3	36					0	0	0.004672	0	0
SCN5A	6331	broad.mit.edu	37	3	38592632	38592632	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:38592632C>T	uc003cio.2	-	28	5425	c.5231G>A	c.(5230-5232)AGC>AAC	p.S1744N	SCN5A_uc003cin.2_Missense_Mutation_p.S1743N|SCN5A_uc003cil.3_Missense_Mutation_p.S1744N|SCN5A_uc010hhi.2_Missense_Mutation_p.S1726N|SCN5A_uc010hhk.2_Missense_Mutation_p.S1711N|SCN5A_uc011ayr.1_Missense_Mutation_p.S1690N	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1744					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CACGGCTGGGCTCCCGCAGTC	0.607000													38	32					0	0	0.004878	0	0
CYP8B1	1582	broad.mit.edu	37	3	42917193	42917193	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:42917193G>A	uc003cmh.2	-	1	441	c.116C>T	c.(115-117)ACC>ATC	p.T39I	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.T39I	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	39					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CCAGGGCACGGTACCCTTGTC	0.577000													36	33					0	0	0.006230	0	0
SCAP	22937	broad.mit.edu	37	3	47462218	47462218	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:47462218G>A	uc003crh.1	-	12	1644	c.1389C>T	c.(1387-1389)CCC>CCT	p.P463P	SCAP_uc011baz.1_Silent_p.P208P|SCAP_uc003crg.2_Silent_p.P71P	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	463	Cytoplasmic (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		GCTTGGCTGAGGGCAGGCAGG	0.647000											OREG0015548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	45					0	0	0.003954	0	0
CDHR4	389118	broad.mit.edu	37	3	49836822	49836822	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:49836822G>A	uc010hkz.2	-	2	107	c.98C>T	c.(97-99)CCT>CTT	p.P33L	CDHR4_uc003cxp.2_Missense_Mutation_p.P33L|CDHR4_uc011bcw.1_Missense_Mutation_p.P33L	NM_001007540	NP_001007541	A6H8M9	CDHR4_HUMAN	cadherin-like 29 precursor	33	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GACTGTGCCAGGGCCCTGGCT	0.557000													11	9					0	0	0.000978	0	0
LRTM1	57408	broad.mit.edu	37	3	54959002	54959002	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:54959002T>C	uc003dhl.2	-	2	382	c.248A>G	c.(247-249)AAC>AGC	p.N83S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	83	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AAGGGAATTGTTGGACAAGTT	0.453000													15	30					0	0	0.002450	0	0
SLC15A2	6565	broad.mit.edu	37	3	121613329	121613329	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:121613329T>A	uc003eep.2	+	1	159	c.6T>A	c.(4-6)AAT>AAA	p.N2K	SLC15A2_uc011bjn.1_Missense_Mutation_p.N2K	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	2					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CAGCCATGAATCCTTTCCAGA	0.498000													8	125					0	0	0.003080	0	0
PIK3R4	30849	broad.mit.edu	37	3	130422672	130422672	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:130422672C>T	uc003enj.2	-	13	3574	c.2993G>A	c.(2992-2994)CGA>CAA	p.R998Q		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	998	WD 1.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						GACTCTAATTCGATTCACAGC	0.413000													53	59					0	0	0.003610	0	0
TMEM108	66000	broad.mit.edu	37	3	133098779	133098779	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:133098779C>T	uc003eph.2	+	4	498	c.224C>T	c.(223-225)TCA>TTA	p.S75L	TMEM108_uc003epi.2_Missense_Mutation_p.S75L|TMEM108_uc003epj.1_Missense_Mutation_p.S75L|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Missense_Mutation_p.S26L	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	75	Pro-rich.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						GGACCCCCCTCACAGGCTGCA	0.632000													46	44					0	0	0.003610	0	0
HPS3	84343	broad.mit.edu	37	3	148889998	148889998	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:148889998C>T	uc003ewu.1	+	17	3144	c.3004C>T	c.(3004-3006)CCA>TCA	p.P1002S	CP_uc011bnr.1_Intron|HPS3_uc011bnq.1_Missense_Mutation_p.P837S|HPS3_uc003ewv.1_RNA	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	1002						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TCGAAAGAAACCATTGACTTA	0.338000									Hermansky-Pudlak_syndrome				7	17					0	0	0.003080	0	0
EPHB3	2049	broad.mit.edu	37	3	184293659	184293659	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:184293659C>T	uc003foz.2	+	4	1335	c.898C>T	c.(898-900)CCC>TCC	p.P300S		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	300	Cys-rich.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GGGAGAGGGGCCCTGCCTCCC	0.632000													40	36					0	0	0.004878	0	0
ATP13A5	344905	broad.mit.edu	37	3	192992869	192992869	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:192992869C>T	uc011bsq.1	-	30	3619	c.3619G>A	c.(3619-3621)GGC>AGC	p.G1207S		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	1207					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GTGGGTTGGCCTCCCAATTTG	0.418000													68	75					0	0	0.003610	0	0
KIAA0226	9711	broad.mit.edu	37	3	197427607	197427607	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr3:197427607G>A	uc003fyc.2	-	7	1321	c.1138C>T	c.(1138-1140)CTG>TTG	p.L380L	KIAA0226_uc003fyd.3_Silent_p.L320L|KIAA0226_uc003fye.1_Silent_p.L87L|KIAA0226_uc003fyf.2_Silent_p.L213L|KIAA0226_uc003fyg.2_Silent_p.L373L	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	380	Ser-rich.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		ACACTGGACAGCTGGCTCTCC	0.577000													18	34					0	0	0.001216	0	0
CPZ	8532	broad.mit.edu	37	4	8621281	8621281	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:8621281C>T	uc003glm.2	+	11	2022	c.1896C>T	c.(1894-1896)CCC>CCT	p.P632P	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Silent_p.P495P|CPZ_uc003glo.2_Silent_p.P621P|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	632					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GGAGTAAGCCCTGGTGGTGGT	0.706000													26	27					0	0	0.001512	0	0
GBA3	57733	broad.mit.edu	37	4	22749054	22749054	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:22749054C>T	uc003gqp.3	+	3	513	c.422C>T	c.(421-423)TCC>TTC	p.S141F	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.S142F	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	141					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						ATCATTGAATCCTTTGACAAA	0.408000													51	64					0	0	0.003610	0	0
APBB2	323	broad.mit.edu	37	4	40947069	40947069	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:40947069G>T	uc003gvl.2	-	7	1484	c.854C>A	c.(853-855)TCA>TAA	p.S285*	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Nonsense_Mutation_p.S285*|APBB2_uc003gvn.2_Nonsense_Mutation_p.S286*|APBB2_uc011byt.1_Nonsense_Mutation_p.S268*	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	285					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						AGTCTGAAATGAGTGATCACT	0.478000													36	43					6.02846e-25	1.23351e-24	0.003271	1	0
Unknown	0	broad.mit.edu	37	4	69344581	69344581	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:69344581C>T	uc003hdz.3	+	9	1046	c.982C>T	c.(982-984)CAT>TAT	p.H328Y		NM_014058	NP_054777			transmembrane protease, serine 11E																		CAGTCAAAATCATCTTCGACA	0.343000													60	73					0	0	0.003610	0	0
C4orf40	401137	broad.mit.edu	37	4	71024155	71024155	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:71024155C>T	uc003hfa.3	+	4	259	c.186C>T	c.(184-186)TAC>TAT	p.Y62Y	C4orf40_uc003hfb.3_Silent_p.Y62Y	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	62						extracellular region					0						TCCCCAGTTACCCTGGGAATA	0.458000													76	91					0	0	0.003610	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013454	73013454	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:73013454G>A	uc003hgg.2	+	4	1592	c.1494G>A	c.(1492-1494)AGG>AGA	p.R498R	NPFFR2_uc010iig.1_Silent_p.R280R|NPFFR2_uc003hgi.2_Silent_p.R399R|NPFFR2_uc003hgh.2_Silent_p.R396R|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	498	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TGCTTTATAGGAAAAGTGCTG	0.373000													33	59					0	0	0.003755	0	0
CDS1	1040	broad.mit.edu	37	4	85540562	85540562	+	Silent	SNP	T	C	C			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:85540562T>C	uc011ccv.1	+	5	954	c.456T>C	c.(454-456)TGT>TGC	p.C152C		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	152	Helical; (Potential).				signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		TTCTATTGTGTGTAAACTACT	0.308000													3	34					0	0	0.000248	0	0
HSD17B11	51170	broad.mit.edu	37	4	88258515	88258515	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:88258515G>A	uc003hqp.2	-	7	1049	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_016245	NP_057329	Q8NBQ5	DHB11_HUMAN	estradiol 17-beta-dehydrogenase 11	272					androgen catabolic process|steroid biosynthetic process	cytoplasm|extracellular region	binding|estradiol 17-beta-dehydrogenase activity			ovary(2)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000339)		GCTCAGGAAGGATCCTAAAAG	0.294000													32	43					0	0	0.002096	0	0
BANK1	55024	broad.mit.edu	37	4	102750985	102750985	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:102750985A>T	uc003hvy.3	+	2	365	c.91A>T	c.(91-93)ATG>TTG	p.M31L	BANK1_uc003hvx.3_Missense_Mutation_p.M16L|BANK1_uc010ill.2_Intron|BANK1_uc003hvz.3_Missense_Mutation_p.M1L	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	31	Interaction with ITPR2.				B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AGATATAATAATGATATATGA	0.294000													10	14					0	0	0.000673	0	0
MLF1IP	79682	broad.mit.edu	37	4	185621975	185621975	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:185621975G>A	uc003iwq.2	-	11	1055	c.985C>T	c.(985-987)CGG>TGG	p.R329W	MLF1IP_uc003iwp.2_Intron|MLF1IP_uc003iwr.1_Intron	NM_024629	NP_078905	Q71F23	CENPU_HUMAN	MLF1 interacting protein	329	Potential.				CenH3-containing nucleosome assembly at centromere|interspecies interaction between organisms|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|condensed chromosome kinetochore|cytosol|nucleoplasm					0		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Hepatocellular(41;0.000519)|Colorectal(36;0.00172)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.0299)|all_hematologic(60;0.0592)|Medulloblastoma(177;0.146)		all cancers(43;7.83e-28)|Epithelial(43;2.56e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-11)|Colorectal(24;3.27e-06)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.16e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000252)|COAD - Colon adenocarcinoma(29;0.000512)|LUSC - Lung squamous cell carcinoma(40;0.01)|READ - Rectum adenocarcinoma(43;0.0419)		GTATCTTACCGAAGCAGTTCA	0.363000													39	65					0	0	0.002522	0	0
UGT3A1	133688	broad.mit.edu	37	5	35954319	35954319	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr5:35954319C>A	uc003jjv.1	-	7	1714	c.1557G>T	c.(1555-1557)AAG>AAT	p.K519N	UGT3A1_uc003jjw.1_RNA	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	519	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCTTCTTCACCTTCCTGGCCC	0.597000													16	3					5.01169e-05	9.89934e-05	0.004990	1	0
GHR	2690	broad.mit.edu	37	5	42695075	42695075	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr5:42695075G>A	uc003jmt.2	+	5	366	c.323G>A	c.(322-324)GGG>GAG	p.G108E	GHR_uc011cpq.1_5'UTR	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	108	Extracellular (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GTTTCTGCTGGGGAAAACAGC	0.308000													15	2					0	0	0.003163	0	0
PCDHA4	56144	broad.mit.edu	37	5	140189147	140189147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr5:140189147C>T	uc003lhi.2	+	1	2476	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S792F|PCDHA4_uc011daa.1_Missense_Mutation_p.S792F	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	792	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGAGGAATCCTTTGCAAAG	0.423000													39	8					0	0	0.002522	0	0
F13A1	2162	broad.mit.edu	37	6	6248600	6248600	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr6:6248600A>G	uc003mwv.2	-	6	866	c.743T>C	c.(742-744)ATG>ACG	p.M248T	F13A1_uc011dib.1_Missense_Mutation_p.M185T	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	248					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	AGAGAGGTCCATTTGTGCTCT	0.438000													20	32					0	0	0.002299	0	0
C4A	720	broad.mit.edu	37	6	31997061	31997061	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr6:31997061G>A	uc011dpd.1	+	28	3673	c.3622G>A	c.(3622-3624)GAC>AAC	p.D1208N	C4A_uc011dpe.1_Missense_Mutation_p.D1208N	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1208					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						GGCCCCTGCGGACCTGCGGGG	0.647000													30	36					0	0	0.001786	0	0
COL11A2	1302	broad.mit.edu	37	6	33141174	33141174	+	Missense_Mutation	SNP	G	A	A	rs150065075		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr6:33141174G>A	uc003ocx.1	-	37	2915	c.2687C>T	c.(2686-2688)CCC>CTC	p.P896L	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.P810L|COL11A2_uc003ocz.1_Missense_Mutation_p.P789L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	896	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CTTCCCAGGGGGGCCCTGGAA	0.597000													33	46					0	0	0.003755	0	0
RAET1K	646024	broad.mit.edu	37	6	150322321	150322321	+	RNA	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr6:150322321C>T	uc003qnq.2	-	2		c.556G>A				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						CCCCACCCTGCTTCCTTTCCT	0.512000													6	2					0	0	0.001168	0	0
HEATR2	54919	broad.mit.edu	37	7	803575	803575	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:803575G>A	uc010krz.1	+	8	1767	c.1747G>A	c.(1747-1749)GAG>AAG	p.E583K	HEATR2_uc003siz.2_Missense_Mutation_p.E451K|HEATR2_uc003sja.2_Missense_Mutation_p.E41K	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	583							protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		ACACTCGCCGGAGCTCCTGCA	0.667000													45	65					0	0	0.003214	0	0
ABCA13	154664	broad.mit.edu	37	7	48317732	48317732	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:48317732A>G	uc003toq.2	+	18	6966	c.6941A>G	c.(6940-6942)GAT>GGT	p.D2314G		NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2314					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTGAAACTGGATCAATTTCTT	0.234000													8	9					0	0	0.003080	0	0
TFPI2	7980	broad.mit.edu	37	7	93516204	93516204	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:93516204C>T	uc003umy.1	-	5	711	c.636G>A	c.(634-636)TTG>TTA	p.L212L	GNGT1_uc003umx.1_Intron|TFPI2_uc003umz.1_Silent_p.*187*|TFPI2_uc003una.1_Silent_p.L201L|TFPI2_uc003unb.1_Silent_p.L218L|TFPI2_uc010lfg.1_Silent_p.L88L	NM_006528	NP_006519	P48307	TFPI2_HUMAN	tissue factor pathway inhibitor 2 precursor	212					blood coagulation	proteinaceous extracellular matrix	extracellular matrix structural constituent|serine-type endopeptidase inhibitor activity			pancreas(1)	1	all_cancers(62;4.45e-10)|all_epithelial(64;2.92e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			TTTTCTTTTTCAAAGCTAAAA	0.333000													61	78					0	0	0.003610	0	0
SND1	27044	broad.mit.edu	37	7	127343259	127343259	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:127343259C>T	uc003vmi.2	+	7	948	c.722C>T	c.(721-723)CCA>CTA	p.P241L		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	241	TNase-like 2.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						AGTGAAACTCCAGAGCCTTTT	0.488000													36	55					0	0	0.003755	0	0
FLNC	2318	broad.mit.edu	37	7	128490916	128490916	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:128490916G>A	uc003vnz.3	+	33	5667	c.5458G>A	c.(5458-5460)GGC>AGC	p.G1820S	FLNC_uc003voa.3_Missense_Mutation_p.G1787S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1820	Filamin 16.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CAACAAGGACGGCACCATCAC	0.607000													44	61					0	0	0.003214	0	0
LOC407835	407835	broad.mit.edu	37	7	128767045	128767045	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:128767045G>A	uc003voo.2	+	1	721	c.474G>A	c.(472-474)CTG>CTA	p.L158L		NR_002144				SubName: Full=cDNA FLJ35806 fis, clone TESTI2005987, highly similar to Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2); SubName: Full=Mitogen-activated protein kinase kinase 2, isoform CRA_d;												0						ACCAGGGGCTGAAAGAGGCCA	0.592000													7	10					0	0	0.003080	0	0
SLC13A4	26266	broad.mit.edu	37	7	135369006	135369006	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:135369006C>T	uc003vta.2	-	15	2298	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	SLC13A4_uc003vtb.2_Missense_Mutation_p.E538K|PL-5283_uc003vsz.3_Intron	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	537						integral to plasma membrane	sodium:sulfate symporter activity				0						TGCAGCGTTTCAGACTAGAAG	0.483000													33	37					0	0	0.004289	0	0
AKR1D1	6718	broad.mit.edu	37	7	137773460	137773460	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:137773460G>A	uc003vtz.2	+	2	276	c.207G>A	c.(205-207)AGG>AGA	p.R69R	AKR1D1_uc011kqb.1_Silent_p.R69R|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Silent_p.R69R|AKR1D1_uc011kqf.1_Silent_p.R69R	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	69					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						AGGCCATCAGGGAGAAGATAG	0.502000													12	12					0	0	0.000978	0	0
CLCN1	1180	broad.mit.edu	37	7	143028644	143028644	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:143028644G>A	uc003wcr.1	+	10	1152	c.1065G>A	c.(1063-1065)GGG>GGA	p.G355G	CLCN1_uc011ktc.1_Silent_p.G17G	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	355	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					ACACCCTCAGGATTTGCTGTG	0.473000													30	36					0	0	0.001512	0	0
NOBOX	135935	broad.mit.edu	37	7	144097383	144097383	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:144097383C>T	uc011kue.1	-	5	867	c.867G>A	c.(865-867)AAG>AAA	p.K289K		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	289	Homeobox.				cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					CTTGGAATATCTTCTCTAGCT	0.522000													31	47					0	0	0.002445	0	0
ACTR3C	653857	broad.mit.edu	37	7	149990406	149990406	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:149990406G>A	uc003wgu.1	-	3	338	c.148C>T	c.(148-150)CCA>TCA	p.P50S		NM_001040135	NP_001035225	Q9C0K3	ARP3C_HUMAN	actin-related protein 3-beta isoform 2	50					regulation of actin filament polymerization	cytoskeleton	actin binding|ATP binding				0						CTTACCACTGGGATAACATGG	0.423000													5	7					0	0	0.003080	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490296	150490296	+	Silent	SNP	G	A	A	rs148000953		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr7:150490296G>A	uc003wht.3	-	5	646	c.480C>T	c.(478-480)ATC>ATT	p.I160I	TMEM176B_uc003whu.3_Silent_p.I160I|TMEM176B_uc003whv.3_Silent_p.I123I|TMEM176B_uc003whw.3_Silent_p.I160I	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	160					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACACAGTGTCGATGTATAAAA	0.517000													35	50					0	0	0.003755	0	0
RP1L1	94137	broad.mit.edu	37	8	10470689	10470689	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:10470689C>T	uc003wtc.2	-	4	1148	c.919G>A	c.(919-921)GAT>AAT	p.D307N		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	307					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTCATGTCATCGCCAGCCACC	0.647000													75	8					0	0	0.003610	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24253266	24253266	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:24253266G>A	uc003xdz.2	+	5	617	c.397G>A	c.(397-399)GAA>AAA	p.E133K	ADAMDEC1_uc010lub.2_Missense_Mutation_p.E54K|ADAMDEC1_uc011lab.1_Missense_Mutation_p.E54K	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	133					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CATCCTAAATGAAAAGAATTC	0.289000													16	8					0	0	0.001216	0	0
KIF13B	23303	broad.mit.edu	37	8	29033614	29033614	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:29033614G>A	uc003xhh.3	-	10	975	c.916C>T	c.(916-918)CGT>TGT	p.R306C	KIF13B_uc003xhj.2_Missense_Mutation_p.R203C|KIF13B_uc010lvf.1_Missense_Mutation_p.R242C	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	306					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		ACTGAGTCACGATATGGAACA	0.433000													12	2					0	0	0.000978	0	0
LYN	4067	broad.mit.edu	37	8	56863053	56863053	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:56863053C>A	uc003xsk.3	+	5	602	c.320C>A	c.(319-321)ACA>AAA	p.T107K	LYN_uc003xsl.3_Missense_Mutation_p.T86K	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	107	SH3.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			TCCCTTTTAACAAAAAAAGAA	0.338000													89	107					5.29478e-28	1.08898e-27	0.003610	1	0
ZFHX4	79776	broad.mit.edu	37	8	77767673	77767673	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:77767673C>T	uc003yav.2	+	10	8768	c.8381C>T	c.(8380-8382)CCC>CTC	p.P2794L	ZFHX4_uc003yau.1_Missense_Mutation_p.P2839L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2794L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2794						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCTTTGTCTCCCAAAGAGCCA	0.498000										HNSCC(33;0.089)			21	29					0	0	0.001882	0	0
PMP2	5375	broad.mit.edu	37	8	82356831	82356831	+	Silent	SNP	G	A	A	rs149339630		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:82356831G>A	uc003ycb.1	-	3	350	c.252C>T	c.(250-252)ATC>ATT	p.I84I	PMP2_uc010lzv.1_RNA	NM_002677	NP_002668	P02689	MYP2_HUMAN	peripheral myelin protein 2	84						cytoplasm	cholesterol binding|fatty acid binding|transporter activity				0			Epithelial(68;0.186)			GCAGGGTTACGATGCTCTGCA	0.403000													34	20					0	0	0.004289	0	0
RUNX1T1	862	broad.mit.edu	37	8	92988200	92988200	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:92988200G>A	uc003yfd.2	-	9	1365	c.1281C>T	c.(1279-1281)GAC>GAT	p.D427D	RUNX1T1_uc003yfc.1_Silent_p.D400D|RUNX1T1_uc003yfe.1_Silent_p.D390D|RUNX1T1_uc010mao.2_Silent_p.D400D|RUNX1T1_uc011lgi.1_Silent_p.D438D|RUNX1T1_uc010man.1_Silent_p.H52H|RUNX1T1_uc003yfb.1_Silent_p.D390D	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	427				D -> G (in Ref. 2; AAC26143).	generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CCCGATGCGCGTCTATGAAAA	0.483000													7	173					0	0	0.003080	0	0
TG	7038	broad.mit.edu	37	8	133923733	133923733	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr8:133923733C>G	uc003ytw.2	+	19	4155	c.4114C>G	c.(4114-4116)CTT>GTT	p.L1372V	TG_uc010mdw.2_Missense_Mutation_p.L131V	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1372					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GAAATCACGGCTTGAGGACAT	0.403000													4	148					0	0	0.000248	0	0
FAM75A6	389730	broad.mit.edu	37	9	43630609	43630609	+	Silent	SNP	G	A	A	rs2261047		TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:43630609G>A	uc011lrb.1	-	1	122	c.93C>T	c.(91-93)ACC>ACT	p.T31T		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	31	Helical; (Potential).					integral to membrane					0						CAAACACCAAGGTGAGGAAGA	0.473000													3	8					0	0	0.000602	0	0
LOC442421	442421	broad.mit.edu	37	9	66499680	66499680	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:66499680C>A	uc004aee.1	+	1	490	c.490C>A	c.(490-492)CCC>ACC	p.P164T	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TCATGTTAACCCCTTCCCAGG	0.582000													7	29					5.18039e-06	1.03349e-05	0.003080	1	0
GDA	9615	broad.mit.edu	37	9	74817548	74817548	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:74817548G>A	uc004aiq.2	+	3	457	c.274G>A	c.(274-276)GGA>AGA	p.G92R	GDA_uc011lse.1_Missense_Mutation_p.G18R|GDA_uc011lsf.1_Missense_Mutation_p.G18R|GDA_uc004air.2_Missense_Mutation_p.G92R|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.G50R|GDA_uc004ait.1_Missense_Mutation_p.G18R	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	92					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		TTCCTTTGCTGGAAGTAGCAT	0.413000													47	56					0	0	0.003610	0	0
TRPM6	140803	broad.mit.edu	37	9	77416982	77416982	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:77416982C>A	uc004ajl.1	-	16	2079	c.1841G>T	c.(1840-1842)TGG>TTG	p.W614L	TRPM6_uc004ajk.1_Missense_Mutation_p.W609L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_5'UTR	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	614	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CAGCACAGCCCAAACCAGCAG	0.463000													14	24					3.27435e-08	6.56516e-08	0.002450	1	0
UBQLN1	29979	broad.mit.edu	37	9	86281333	86281333	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:86281333G>A	uc004amv.2	-	8	1838	c.1264C>T	c.(1264-1266)CCC>TCC	p.P422S	UBQLN1_uc004amw.2_Intron	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1	422					apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						GCAAATAGGGGATTATTCAGC	0.388000													24	37					0	0	0.005443	0	0
ROR2	4920	broad.mit.edu	37	9	94493274	94493274	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:94493274G>A	uc004arj.1	-	7	1300	c.1101C>T	c.(1099-1101)AAC>AAT	p.N367N	ROR2_uc004ari.1_Silent_p.N227N|ROR2_uc004ark.2_Silent_p.N367N	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	367	Extracellular (Potential).|Kringle.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GGCCTCCGGGGTTCCGGCAGT	0.612000													18	27					0	0	0.007413	0	0
ECM2	1842	broad.mit.edu	37	9	95277159	95277159	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:95277159C>T	uc004ash.2	-	4	873	c.808G>A	c.(808-810)GAG>AAG	p.E270K	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.E248K|ECM2_uc011lty.1_Missense_Mutation_p.E270K|ECM2_uc004asg.2_Missense_Mutation_p.E248K	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	270	Poly-Glu.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						tcctcctcctccCTTCCTTGG	0.393000													76	87					0	0	0.003610	0	0
CTSL2	1515	broad.mit.edu	37	9	99797857	99797857	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:99797857G>A	uc004awt.2	-	6	937	c.740C>T	c.(739-741)TCC>TTC	p.S247F	CTSL2_uc010msi.2_Missense_Mutation_p.S247F|CTSL2_uc004awu.2_Missense_Mutation_p.S192F|CTSL2_uc010msj.1_Missense_Mutation_p.S192F	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	247						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				CATAGCAACGGAGATGGGCCC	0.473000													20	24					0	0	0.001523	0	0
OR13C3	138803	broad.mit.edu	37	9	107298467	107298467	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:107298467C>T	uc004bcb.1	-	1	628	c.628G>A	c.(628-630)GAA>AAA	p.E210K		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	210	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GCTAATATTTCACATGCGAAA	0.423000													53	65					0	0	0.003610	0	0
SLC2A8	29988	broad.mit.edu	37	9	130167745	130167745	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:130167745G>A	uc004bqu.2	+	9	1242	c.1197G>A	c.(1195-1197)GAG>GAA	p.E399E	SLC2A8_uc010mxj.2_Intron|SLC2A8_uc004bqv.2_Silent_p.E71E	NM_014580	NP_055395	Q9NY64	GTR8_HUMAN	solute carrier family 2 (facilitated glucose	399	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	D-glucose transmembrane transporter activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						TCATGTCAGAGATCTTCCCTC	0.627000													19	31					0	0	0.001523	0	0
ABL1	25	broad.mit.edu	37	9	133759967	133759967	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:133759967C>G	uc004bzw.2	+	11	2293	c.2290C>G	c.(2290-2292)CGG>GGG	p.R764G	ABL1_uc004bzv.2_Missense_Mutation_p.R783G	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	764	Nuclear localization signal 3 (Potential).				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	GGCTCTGCCTCGGAAGAGGGC	0.587000			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								22	44					0	0	0.001523	0	0
GBGT1	26301	broad.mit.edu	37	9	136029198	136029198	+	Silent	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr9:136029198G>A	uc004ccw.2	-	7	1091	c.810C>T	c.(808-810)GCC>GCT	p.A270A	RALGDS_uc011mcw.1_Intron|GBGT1_uc004ccx.2_Silent_p.A223A|GBGT1_uc010nab.2_3'UTR|GBGT1_uc011mcx.1_Silent_p.A253A|GBGT1_uc010nac.1_Silent_p.A134A|GBGT1_uc004ccy.1_3'UTR	NM_021996	NP_068836	Q8N5D6	GBGT1_HUMAN	globoside	270	Lumenal (Potential).				carbohydrate metabolic process|glycolipid biosynthetic process	Golgi membrane|integral to membrane	metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;3.49e-06)|Epithelial(140;2.59e-05)		CATATACCCTGGCCACCTGCC	0.597000													76	55					0	0	0.003610	0	0
FANCB	2187	broad.mit.edu	37	X	14883218	14883218	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chrX:14883218C>A	uc004cwg.1	-	3	683	c.415G>T	c.(415-417)GGC>TGC	p.G139C	FANCB_uc004cwh.1_Missense_Mutation_p.G139C	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	139					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					ATTAAAGGGCCATTAAGGACC	0.353000								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				35	4					7.11191e-15	1.43316e-14	0.002836	1	0
BMX	660	broad.mit.edu	37	X	15540574	15540574	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chrX:15540574C>G	uc004cww.2	+	7	804	c.616C>G	c.(616-618)CCA>GCA	p.P206A	BMX_uc004cwx.3_Missense_Mutation_p.P206A|BMX_uc004cwy.3_Missense_Mutation_p.P206A	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	206					cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					TGGCTCCCAGCCACCATCTTC	0.443000													4	70					0	0	0.000248	0	0
BMX	660	broad.mit.edu	37	X	15555257	15555257	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chrX:15555257G>A	uc004cww.2	+	14	1411	c.1223G>A	c.(1222-1224)GGA>GAA	p.G408E	BMX_uc004cwx.3_Missense_Mutation_p.G408E|BMX_uc004cwy.3_Missense_Mutation_p.G408E	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	408					cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					GCCTTGTTAGGAATCTGGGAA	0.483000													111	11					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	X	48159108	48159108	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chrX:48159108G>T	uc010nib.1	-	6	512	c.425C>A	c.(424-426)CCG>CAG	p.P142Q		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		TGGTTTTCCCGGGGGGCACAG	0.488000													130	6					1.28113e-61	2.66234e-61	0.003610	1	0
BMP15	9210	broad.mit.edu	37	X	50659304	50659304	+	Silent	SNP	C	T	T			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chrX:50659304C>T	uc011mnw.1	+	2	876	c.876C>T	c.(874-876)TCC>TCT	p.S292S		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	292					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					ACCAGTGTTCCCTCCACCCTT	0.512000													47	5					0	0	0.003610	0	0
SF1	7536	broad.mit.edu	37	11	64533440	64533448	+	In_Frame_Del	DEL	AGGCGGTGG	-	-			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:64533440_64533448delAGGCGGTGG	uc001obb.1	-	13	2139_2147	c.1762_1770delCCACCGCCT	c.(1762-1770)CCACCGCCTdel	p.PPP588del	SF1_uc010rnm.1_Intron|SF1_uc010rnn.1_In_Frame_Del_p.PPP562del|SF1_uc001oaz.1_Intron|SF1_uc001oba.1_In_Frame_Del_p.PPP588del|SF1_uc001obc.1_Intron|SF1_uc001obd.1_Intron|SF1_uc001obe.1_Intron|SF1_uc010rno.1_Intron	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	588_590	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						CGGCGGAACCAGGCGGTGGAGGCGGCGGA	0.703													7	0	---	---	---	---					
MALAT1	378938	broad.mit.edu	37	11	65268180	65268180	+	RNA	DEL	A	-	-			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr11:65268180delA	uc010roh.1	+	1		c.2948delA			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTGTGCGTAGAGGATCCTAGA	0.532													44	16	---	---	---	---					
MYO1A	4640	broad.mit.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr12:57422573delT	uc001smw.3	-	28	3341	c.3098delA	c.(3097-3099)AAGfs	p.K1033fs	MYO1A_uc010sqz.1_Frame_Shift_Del_p.K871fs|MYO1A_uc009zpd.2_Frame_Shift_Del_p.K1033fs	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	1033					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						ATGACTCCCCTTTTTTTTGTA	0.557													8	363	---	---	---	---					
GABRB3	2562	broad.mit.edu	37	15	26866484	26866485	+	Frame_Shift_Ins	INS	-	TC	TC			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:26866484_26866485insTC	uc001zaz.2	-	4	579_580	c.437_438insGA	c.(436-438)GATfs	p.D146fs	GABRB3_uc010uae.1_Frame_Shift_Ins_p.D61fs|GABRB3_uc001zba.2_Frame_Shift_Ins_p.D146fs|GABRB3_uc001zbb.2_Frame_Shift_Ins_p.D202fs|GABRB3_uc001zbc.2_RNA	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	146	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GCACTGTCCCATCAGGGTGAAG	0.460													46	91	---	---	---	---					
DIS3L	115752	broad.mit.edu	37	15	66610870	66610870	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr15:66610870delA	uc010ujm.1	+	8	1093	c.1078delA	c.(1078-1080)AAAfs	p.K360fs	DIS3L_uc010ujl.1_Intron|DIS3L_uc002app.2_Frame_Shift_Del_p.K277fs|DIS3L_uc002apq.2_Frame_Shift_Del_p.K360fs|DIS3L_uc010bho.2_Frame_Shift_Del_p.K226fs	NM_001143688	NP_001137160	Q8TF46	DI3L1_HUMAN	DIS3 mitotic control homolog (S.	360					rRNA catabolic process	cytoplasm|exosome (RNase complex)	exonuclease activity|protein binding|ribonuclease activity|RNA binding			ovary(2)	2						ATCTCAGGGCAAAAATGCTCA	0.453													60	72	---	---	---	---					
PRR12	57479	broad.mit.edu	37	19	50099739	50099739	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr19:50099739delC	uc002poo.3	+	4	2147	c.2147delC	c.(2146-2148)GCGfs	p.A716fs		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GGTGCCACTGCGGCACTGGAG	0.652													11	8	---	---	---	---					
ANAPC4	29945	broad.mit.edu	37	4	25379058	25379058	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NE-06A-21D-A196-08	TCGA-ER-A2NE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ccd02c28-32da-429b-8f82-8c5f210f94fe	a44453e0-abf7-4d0a-a87c-08baba5ac015	g.chr4:25379058delT	uc003gro.2	+	2	138	c.9delT	c.(7-9)CGTfs	p.R3fs		NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	3					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				CCATGTTGCGTTTTCCGACCT	0.632													16	36	---	---	---	---					
