Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CSMD2	114784	broad.mit.edu	37	1	34276407	34276407	+	Silent	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:34276407G>A	uc001bxn.1	-	10	1292	c.1263C>T	c.(1261-1263)TTC>TTT	p.F421F	CSMD2_uc001bxm.1_Silent_p.F461F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	421	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTGAATGGGGAAATTGGGGG	0.547000													25	71					0	0	0.000147802	0	0
RSPO1	284654	broad.mit.edu	37	1	38082349	38082349	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:38082349T>C	uc001cbl.1	-	5	883	c.95_splice	c.e5-1	p.I32_splice	RSPO1_uc001cbm.1_Splice_Site_p.I32_splice|RSPO1_uc009vvf.1_Splice_Site_p.V5_splice|RSPO1_uc009vvg.1_Splice_Site_p.I32_splice	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor						positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CGGCACTGACTGCAAAGGTGG	0.557000													4	62					0	0	0.00024832	0	0
AMPD1	270	broad.mit.edu	37	1	115221134	115221134	+	Silent	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:115221134G>A	uc001efe.1	-	8	996	c.912C>T	c.(910-912)ATC>ATT	p.I304I	AMPD1_uc001eff.1_Silent_p.I300I	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	304					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CGGCTGCATGGATATGGGTGT	0.398000													6	30					0	0	0.000442599	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458492	120458493	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:120458492_120458493GG>TT	uc001eik.2	-	34	7108_7109	c.6852_6853CC>AA	c.(6850-6855)CCCCAG>CCAAAG	p.Q2285K		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2285	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGCCTGCTCTGGGGAGCTATGC	0.564000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				10	395					0	0	6.4e-05	0	0
C1orf116	79098	broad.mit.edu	37	1	207195689	207195689	+	Silent	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:207195689G>A	uc001hfd.2	-	4	1679	c.1420C>T	c.(1420-1422)CTG>TTG	p.L474L	C1orf116_uc009xcb.1_Silent_p.L228L	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	474						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					ATCTGTCTCAGGCCAGGGGTG	0.557000													5	32					0	0	3.59834e-05	0	0
C1orf116	79098	broad.mit.edu	37	1	207195703	207195703	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:207195703C>T	uc001hfd.2	-	4	1665	c.1406G>A	c.(1405-1407)AGC>AAC	p.S469N	C1orf116_uc009xcb.1_Missense_Mutation_p.S223N	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	469						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					AGGGGTGTTGCTCTCCTGGAG	0.552000													4	33					0	0	3.59834e-05	0	0
TAF1A	9015	broad.mit.edu	37	1	222750876	222750877	+	Missense_Mutation	DNP	CG	AT	AT	rs145721552	by1000genomes	TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:222750876_222750877CG>AT	uc009xdz.1	-	5	703_704	c.514_515CG>AT	c.(514-516)CGG>ATG	p.R172M	TAF1A_uc001hni.1_Missense_Mutation_p.R58M|TAF1A_uc001hnj.2_Missense_Mutation_p.R172M|TAF1A_uc001hnk.2_Missense_Mutation_p.R58M|TAF1A_uc010pur.1_Missense_Mutation_p.R172M	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	172					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		TAATATTTCCCGGGAAGACGTA	0.381000													12	626					0	0	6.4e-05	0	0
ANK3	288	broad.mit.edu	37	10	61836092	61836092	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr10:61836092G>A	uc001jky.2	-	37	4739	c.4547C>T	c.(4546-4548)CCA>CTA	p.P1516L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron|ANK3_uc009xpc.1_RNA	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1516					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGACTTGGCTGGCCCAGGCAC	0.473000													6	25					0	0	8.12818e-05	0	0
OR51M1	390059	broad.mit.edu	37	11	5410654	5410654	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr11:5410654C>T	uc010qzc.1	+	1	26	c.26C>T	c.(25-27)CCT>CTT	p.P9L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	9						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCGCTCAGTCCTCAATTCATG	0.403000													7	133					0	0	0.000157383	0	0
KRT5	3852	broad.mit.edu	37	12	52914008	52914008	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr12:52914008G>A	uc001san.2	-	1	236	c.73C>T	c.(73-75)CCG>TCG	p.P25S	KRT5_uc009zmh.2_Missense_Mutation_p.P25S	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	25	Head.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GAGACAGACGGGGTGATGGCA	0.657000													5	16					0	0	1.23904e-05	0	0
C12orf10	60314	broad.mit.edu	37	12	53696978	53696978	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr12:53696978G>A	uc001scp.3	+	3	541	c.489_splice	c.e3+1	p.K163_splice	C12orf10_uc010sof.1_Missense_Mutation_p.V164M|C12orf10_uc009zmx.2_Splice_Site_p.K163_splice|C12orf10_uc001scq.3_Splice_Site_p.K48_splice	NM_021640	NP_067653	Q86UA3	Q86UA3_HUMAN	MYG1 protein precursor											ovary(2)	2						CTATGACAAGGTGGGGACCTG	0.612000													5	25					0	0	3.59834e-05	0	0
SBNO1	55206	broad.mit.edu	37	12	123782672	123782672	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr12:123782672C>T	uc010tap.1	-	30	3892	c.3892G>A	c.(3892-3894)GGT>AGT	p.G1298S	SBNO1_uc009zxv.2_RNA|SBNO1_uc010tao.1_Missense_Mutation_p.G1297S|SBNO1_uc010taq.1_Missense_Mutation_p.G249S	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1298							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		CAACGAAGACCTATTTCACAA	0.418000													10	50					0	0	3.86212e-05	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	A	A	rs12366766		TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr12:132547087G>A	uc001ujn.2	+	46	8210	c.8175G>A	c.(8173-8175)CAG>CAA	p.Q2725Q	EP400_uc001ujl.2_Silent_p.Q2724Q|EP400_uc001ujm.2_Silent_p.Q2644Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.289000													6	38					0	0	0.000274275	0	0
KBTBD6	89890	broad.mit.edu	37	13	41706580	41706580	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr13:41706580T>C	uc001uxu.1	-	1	357	c.68A>G	c.(67-69)AAG>AGG	p.K23R	KBTBD6_uc010ace.1_Intron|KBTBD6_uc010tfe.1_Missense_Mutation_p.K23R|uc001uxv.1_5'Flank	NM_152903	NP_690867	Q86V97	KBTB6_HUMAN	kelch repeat and BTB (POZ) domain-containing 6	23							protein binding			ovary(1)|skin(1)	2		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;4.08e-09)|Epithelial(112;4.74e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000131)|GBM - Glioblastoma multiforme(144;0.000876)|BRCA - Breast invasive adenocarcinoma(63;0.0673)		GTGAATCTTCTTGGGCCGCTT	0.617000													27	109					0	0	0.000147802	0	0
NEK5	341676	broad.mit.edu	37	13	52639739	52639739	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr13:52639739G>A	uc001vge.2	-	22	2071	c.1931C>T	c.(1930-1932)TCC>TTC	p.S644F		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	644							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		AGTCTGCGTGGAAAACCCTGG	0.502000													9	36					0	0	0.000442599	0	0
GRTP1	79774	broad.mit.edu	37	13	114009759	114009759	+	Silent	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr13:114009759G>A	uc001vtn.2	-	3	316	c.219C>T	c.(217-219)CAC>CAT	p.H73H	GRTP1_uc010tkb.1_5'UTR|GRTP1_uc010tkc.1_Silent_p.H73H|GRTP1_uc010agv.1_RNA	NM_024719	NP_078995	Q5TC63	GRTP1_HUMAN	growth hormone regulated TBC protein 1	73	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0314)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0978)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			CGCGGGCACGGTGCTCCAGCG	0.667000													4	34					0	0	0.00024832	0	0
CHD8	57680	broad.mit.edu	37	14	21870235	21870235	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr14:21870235T>A	uc001was.1	-	20	3200	c.3106A>T	c.(3106-3108)ATC>TTC	p.I1036F	CHD8_uc001war.1_Missense_Mutation_p.I932F|CHD8_uc001wav.1_Missense_Mutation_p.I478F	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1315					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TCCTCCATGATGGCTGCATAT	0.378000													7	54					0	0	8.12818e-05	0	0
C14orf101	54916	broad.mit.edu	37	14	57075882	57075882	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr14:57075882C>T	uc001xcm.2	+	6	817	c.695C>T	c.(694-696)CCC>CTC	p.P232L	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xck.2_Missense_Mutation_p.P232L|C14orf101_uc010aot.1_Missense_Mutation_p.P232L|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_5'UTR	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	232	Helical; (Potential).					integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		GGTTTGCTGCCCTATGTCCAC	0.473000													16	302					0	0	0.000422831	0	0
KCNH5	27133	broad.mit.edu	37	14	63174914	63174914	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr14:63174914G>A	uc001xfx.2	-	11	2330	c.2279C>T	c.(2278-2280)CCC>CTC	p.P760L	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	760	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CGTCTGAATGGGAGTAATCTG	0.532000													5	37					0	0	1.23904e-05	0	0
MAP1A	4130	broad.mit.edu	37	15	43817052	43817052	+	Silent	SNP	A	G	G			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr15:43817052A>G	uc001zrt.2	+	4	3848	c.3381A>G	c.(3379-3381)CAA>CAG	p.Q1127Q		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1127						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CTTTACCCCAAGAACCTGGCA	0.532000													16	38					0	0	0.000422831	0	0
PDIA2	64714	broad.mit.edu	37	16	336416	336416	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr16:336416G>A	uc002cgn.1	+	13	2291	c.1183G>A	c.(1183-1185)GGC>AGC	p.G395S	PDIA2_uc010bqt.1_Missense_Mutation_p.G240S|PDIA2_uc002cgo.1_Missense_Mutation_p.G395S	NM_006849	NP_006840	Q13087	PDIA2_HUMAN	protein disulfide isomerase A2 precursor	395	Thioredoxin 2.				apoptosis|cell redox homeostasis|glycerol ether metabolic process|protein folding|protein retention in ER lumen|response to hypoxia	endoplasmic reticulum lumen	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity|steroid binding			central_nervous_system(1)|skin(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				GACCCTCGTGGGCAAGAATTT	0.577000													5	36					0	0	1.23904e-05	0	0
EIF4A1	1973	broad.mit.edu	37	17	7480012	7480012	+	Splice_Site	SNP	T	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr17:7480012T>A	uc002gho.1	+	13	1839	c.514_splice	c.e13+2	p.S172_splice	EIF4A1_uc002ghr.1_Splice_Site_p.S172_splice|EIF4A1_uc002ghq.1_Splice_Site_p.S172_splice|EIF4A1_uc002ghp.1_Splice_Site_p.S172_splice|SNORD10_uc002ght.2_5'Flank|SNORA67_uc010cml.1_5'Flank|CD68_uc002ghv.2_5'Flank|CD68_uc002ghu.2_5'Flank	NM_001416	NP_001407	P60842	IF4A1_HUMAN	eukaryotic translation initiation factor 4A						nuclear-transcribed mRNA poly(A) tail shortening	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA cap binding|translation initiation factor activity			ovary(1)	1						GATACCTGTGTGAGTAATTCG	0.522000													11	33					0	0	3.86212e-05	0	0
RGL3	57139	broad.mit.edu	37	19	11508131	11508131	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr19:11508131C>T	uc002mrp.2	-	17	1953	c.1889G>A	c.(1888-1890)CGA>CAA	p.R630Q	RGL3_uc002mrn.2_Missense_Mutation_p.R394Q|RGL3_uc002mrm.2_Missense_Mutation_p.R394Q|RGL3_uc002mro.2_Missense_Mutation_p.R636Q	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	630	Interaction with HRAS, MRAS and RIT1 (By similarity).|Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						CAAGATGCTTCGATACAGGTT	0.677000													10	73					0	0	0.00010058	0	0
EMR3	84658	broad.mit.edu	37	19	14748943	14748943	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr19:14748943C>T	uc002mzi.3	-	11	1606	c.1458G>A	c.(1456-1458)TGG>TGA	p.W486*	EMR3_uc010dzp.2_Nonsense_Mutation_p.W434*|EMR3_uc010xnv.1_Nonsense_Mutation_p.W360*	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	486	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						AAAGGTGAGGCCAGGAGGCTG	0.498000													14	78					0	0	0.000308642	0	0
SFRS16	11129	broad.mit.edu	37	19	45570681	45570681	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr19:45570681C>T	uc002pak.2	+	14	1594	c.1496C>T	c.(1495-1497)TCC>TTC	p.S499F	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.S437F|SFRS16_uc002pam.2_Missense_Mutation_p.S499F	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	499	Ser-rich.|Arg-rich.				mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		AGCAGCTGGTCCCTCAGCCCG	0.478000													10	40					0	0	3.86212e-05	0	0
NLRP9	338321	broad.mit.edu	37	19	56243679	56243679	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr19:56243679C>A	uc002qly.2	-	2	1546	c.1518G>T	c.(1516-1518)ATG>ATT	p.M506I		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	506						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AGGTCTCCAGCATGCTGACGA	0.443000													17	78					1.67942e-08	6.70967e-07	7.07596e-05	1	0
TTC31	64427	broad.mit.edu	37	2	74719860	74719860	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:74719860C>T	uc002slt.2	+	12	1272	c.1249C>T	c.(1249-1251)CTC>TTC	p.L417F	TTC31_uc010yrv.1_Intron|TTC31_uc002slu.2_Missense_Mutation_p.L271F	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	417							binding				0						CTCTTGCCTTCTCCACCTCAC	0.592000													10	34					0	0	6.40141e-05	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107423245	107423245	+	Silent	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:107423245C>T	uc002tdq.2	-	6	1598	c.1479G>A	c.(1477-1479)CAG>CAA	p.Q493Q	ST6GAL2_uc002tdr.2_Silent_p.Q493Q	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	493	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TGTTCAGGCGCTGCACCAGGA	0.622000													9	65					0	0	6.40141e-05	0	0
IL1F6	27179	broad.mit.edu	37	2	113764230	113764230	+	Silent	SNP	G	A	A	rs148950825		TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:113764230G>A	uc010yxr.1	+	3	180	c.180G>A	c.(178-180)GGG>GGA	p.G60G		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	60					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding	p.G60G(1)			0						AAGACAGAGGGAACCCCATCT	0.522000													38	130					0	0	0.000191422	0	0
POTEE	445582	broad.mit.edu	37	2	132021757	132021757	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:132021757G>A	uc002tsn.2	+	15	2781	c.2729G>A	c.(2728-2730)CGT>CAT	p.R910H	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.R510H|POTEE_uc002tsl.2_Missense_Mutation_p.R492H|POTEE_uc010fmy.1_Missense_Mutation_p.R374H	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	910	Actin-like.						ATP binding				0						GAAATCGTGCGTGACATCAAA	0.602000													9	146					0	0	0.000151284	0	0
LRP1B	53353	broad.mit.edu	37	2	141773459	141773459	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:141773459C>T	uc002tvj.1	-	13	2968	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	666	Extracellular (Potential).|LDL-receptor class B 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTTCATCTTCCTCCCAGTCT	0.413000										TSP Lung(27;0.18)			12	60					0	0	0.000151284	0	0
MBD5	55777	broad.mit.edu	37	2	149248079	149248079	+	Silent	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:149248079C>T	uc002twm.3	+	12	5167	c.4179C>T	c.(4177-4179)ATC>ATT	p.I1393I	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Silent_p.I1393I|MBD5_uc002two.2_Silent_p.I651I|MBD5_uc002twp.2_Silent_p.I443I	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1393	PWWP.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GGGGCCAAATCAAAGGACTGA	0.448000													14	66					0	0	0.000219431	0	0
NEB	4703	broad.mit.edu	37	2	152382515	152382516	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:152382515_152382516CG>AT	uc010fnx.2	-	122	17205_17206	c.17014_17015CG>AT	c.(17014-17016)CGG>ATG	p.R5672M	NEB_uc002txr.2_Missense_Mutation_p.R2095M|NEB_uc002txt.3_Missense_Mutation_p.R177M	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5672	Nebulin 155.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle	p.R5672Q(1)		ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AACAGTGTCCCGGGTCTCTGGT	0.490000													8	269					0	0	6.4e-05	0	0
SDPR	8436	broad.mit.edu	37	2	192701266	192701266	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:192701266C>T	uc002utb.2	-	2	991	c.661G>A	c.(661-663)GAA>AAA	p.E221K		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	221	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TCCACCTTTTCCTCGGCACTG	0.483000													14	89					0	0	0.000151284	0	0
DNAH7	56171	broad.mit.edu	37	2	196851910	196851910	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:196851910C>T	uc002utj.3	-	14	1735	c.1634G>A	c.(1633-1635)CGT>CAT	p.R545H		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	545	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATTCCTAAACGAATAGTCTG	0.294000													8	35					0	0	0.000274275	0	0
SCLY	51540	broad.mit.edu	37	2	238940897	238940897	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr2:238940897T>C	uc002vxm.3	+	6	396	c.-166_splice	c.e6+2		UBE2F_uc010znn.1_Splice_Site_p.T116_splice|UBE2F_uc002vxk.2_Splice_Site_p.T148_splice|UBE2F_uc002vxl.2_Splice_Site|UBE2F_uc010zno.1_Splice_Site|UBE2F_uc010znp.1_Intron	NM_016510	NP_057594	Q96I15	SCLY_HUMAN	selenocysteine lyase						cellular amino acid metabolic process	cytosol	pyridoxal phosphate binding|selenocysteine lyase activity|transferase activity			ovary(2)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;1.37e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.6e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.25e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000128)|Lung(119;0.0118)|LUSC - Lung squamous cell carcinoma(224;0.0285)		TTGTTTACTGTAAGTACAGTG	0.328000													4	19					0	0	3.59834e-05	0	0
PLCB1	23236	broad.mit.edu	37	20	8698351	8698351	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr20:8698351G>A	uc002wnb.2	+	14	1372	c.1369G>A	c.(1369-1371)GAT>AAT	p.D457N	PLCB1_uc010zrb.1_Missense_Mutation_p.D356N|PLCB1_uc002wna.2_Missense_Mutation_p.D457N|PLCB1_uc002wnc.1_Missense_Mutation_p.D356N|PLCB1_uc002wnd.1_Missense_Mutation_p.D34N	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	457	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						AAGCCCTATGGATTTAATGTA	0.403000													12	81					0	0	0.000308642	0	0
CASS4	57091	broad.mit.edu	37	20	55012445	55012445	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr20:55012445G>A	uc002xxp.2	+	3	487	c.262G>A	c.(262-264)GAA>AAA	p.E88K	CASS4_uc002xxq.3_Missense_Mutation_p.E88K|CASS4_uc002xxr.2_Missense_Mutation_p.E88K|CASS4_uc010zze.1_Missense_Mutation_p.E88K|CASS4_uc010gio.2_Missense_Mutation_p.E88K	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	88					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						GAGAGGCCTGGAAGAAGCTCC	0.637000													8	22					0	0	0.000157383	0	0
SLC5A3	6526	broad.mit.edu	37	21	35468710	35468711	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr21:35468710_35468711CG>AT	uc002yto.2	+	2	1725_1726	c.1213_1214CG>AT	c.(1213-1215)CGG>ATG	p.R405M	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	405	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						CGCAAGCTCCCGGGAGTTAATG	0.475000													11	493					0	0	6.4e-05	0	0
DSCAM	1826	broad.mit.edu	37	21	41719726	41719726	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr21:41719726T>C	uc002yyq.1	-	6	1533	c.1081A>G	c.(1081-1083)AGG>GGG	p.R361G	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	361	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCTGTGATCCTCACATTTTTT	0.517000													3	188					0	0	0.00024832	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46067153	46067153	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr21:46067153A>C	uc002zfr.3	+	1	823	c.778A>C	c.(778-780)ACC>CCC	p.T260P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	260	25 X 5 AA repeats of C-C-X(3).|24.					keratin filament				ovary(1)	1						CTGTGCCCCCACCTCCTCCTG	0.701000													8	44					0	0	9.7654e-05	0	0
KBTBD5	131377	broad.mit.edu	37	3	42728022	42728022	+	Silent	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr3:42728022G>A	uc003clv.1	+	1	1012	c.912G>A	c.(910-912)GGG>GGA	p.G304G		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	304										ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		TCCTTCCTGGGATCCTCAATG	0.567000													15	69					0	0	0.000308642	0	0
RBM6	10180	broad.mit.edu	37	3	50005048	50005048	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr3:50005048C>T	uc003cyc.2	+	3	323	c.190C>T	c.(190-192)CCT>TCT	p.P64S	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	64					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		TTCGGGGCCTCCTTTTGCAAA	0.527000													6	81					0	0	8.12818e-05	0	0
ERC2	26059	broad.mit.edu	37	3	56207504	56207504	+	Silent	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr3:56207504C>T	uc003dhr.1	-	4	1375	c.1119G>A	c.(1117-1119)ACG>ACA	p.T373T		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	373	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GGAGAGCCTTCGTCTTGGCTG	0.488000													6	38					0	0	8.12818e-05	0	0
FAM116A	201627	broad.mit.edu	37	3	57651848	57651848	+	Splice_Site	SNP	A	G	G			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr3:57651848A>G	uc003dja.2	-	4	503	c.432_splice	c.e4+1	p.K144_splice		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627											pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		TACTTTTCCAACCTTTAAGTA	0.378000													9	54					0	0	0.000274275	0	0
QTRTD1	79691	broad.mit.edu	37	3	113784231	113784231	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr3:113784231C>G	uc003eay.2	+	3	357	c.127C>G	c.(127-129)CCA>GCA	p.P43A	QTRTD1_uc003eaz.2_Missense_Mutation_p.P55A|QTRTD1_uc011biq.1_Intron|QTRTD1_uc011bir.1_Intron|QTRTD1_uc003eba.2_5'Flank	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	43					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						TGGCTCCGCCCCACACCTCAC	0.502000													3	27					0	0	6.4e-05	0	0
DCUN1D4	23142	broad.mit.edu	37	4	52779501	52779501	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr4:52779501C>A	uc003gze.2	+	10	899	c.766C>A	c.(766-768)CTA>ATA	p.L256I	DCUN1D4_uc003gzf.2_Missense_Mutation_p.L221I|DCUN1D4_uc011bzn.1_Missense_Mutation_p.L196I|DCUN1D4_uc003gzg.2_RNA|DCUN1D4_uc003gzh.2_RNA|DCUN1D4_uc011bzo.1_Missense_Mutation_p.L300I	NM_001040402	NP_001035492	Q92564	DCNL4_HUMAN	DCN1, defective in cullin neddylation 1, domain	256	DCUN1.									ovary(2)	2			GBM - Glioblastoma multiforme(4;1.93e-11)|LUSC - Lung squamous cell carcinoma(32;0.00654)			GTGCAATGTCCTAGAGTTTAG	0.368000													5	27					3.59834e-05	0.00141516	3.59834e-05	1	0
DNAH5	1767	broad.mit.edu	37	5	13864596	13864596	+	Silent	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr5:13864596G>A	uc003jfd.2	-	28	4548	c.4506C>T	c.(4504-4506)CTC>CTT	p.L1502L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1502	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTGCCCGGTGAGGGTGGTTA	0.458000									Kartagener_syndrome				7	44					0	0	0.000157383	0	0
OSMR	9180	broad.mit.edu	37	5	38881844	38881844	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr5:38881844G>A	uc003jln.1	+	4	763	c.396G>A	c.(394-396)TGG>TGA	p.W132*	OSMR_uc003jlm.1_Nonsense_Mutation_p.W132*	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	132	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GGAGCAACTGGAGTTCCTGGG	0.423000													12	74					0	0	0.000422831	0	0
HMGCR	3156	broad.mit.edu	37	5	74645866	74645867	+	Splice_Site	DNP	GG	TT	TT			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr5:74645866_74645867GG>TT	uc003kdp.2	+	7	713	c.557_splice	c.e7-1	p.G186_splice	HMGCR_uc011cst.1_Splice_Site_p.G206_splice|HMGCR_uc003kdq.2_Splice_Site_p.G186_splice|HMGCR_uc010izn.1_Splice_Site_p.G26_splice	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase						cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	TCTCTAACCAGGGGTACGTCAG	0.391000													10	406					0	0	6.4e-05	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148695801	148695801	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr5:148695801C>T	uc003lqh.2	+	11	1333	c.1202C>T	c.(1201-1203)TCC>TTC	p.S401F	AFAP1L1_uc010jgy.2_Missense_Mutation_p.S401F|AFAP1L1_uc003lqi.1_Missense_Mutation_p.S16F	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	401							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTGGCTTCTCCAAGAAGAAG	0.602000													9	71					0	0	0.000274275	0	0
FOXF2	2295	broad.mit.edu	37	6	1394974	1394974	+	Silent	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr6:1394974C>T	uc003mtm.2	+	2	1329	c.1215C>T	c.(1213-1215)GAC>GAT	p.D405D	FOXF2_uc003mtn.2_Intron	NM_001452	NP_001443	Q12947	FOXF2_HUMAN	forkhead box F2	405					epithelial to mesenchymal transition|genitalia development|palate development|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0	Ovarian(93;0.0733)	all_lung(73;0.0713)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.095)		CAGTGTGTGACAGAAAAGATT	0.458000													8	82					0	0	0.000442599	0	0
ZDHHC14	79683	broad.mit.edu	37	6	158068315	158068315	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr6:158068315A>G	uc003qqt.2	+	7	1377	c.880A>G	c.(880-882)AGA>GGA	p.R294G	ZDHHC14_uc003qqs.2_Missense_Mutation_p.R294G|ZDHHC14_uc010kjn.2_5'UTR	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	294						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		GTCAAATAAAAGAGGTAAAGA	0.438000													3	85					0	0	6.4e-05	0	0
PI15	51050	broad.mit.edu	37	8	75756325	75756325	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr8:75756325G>A	uc003yal.2	+	3	562	c.383G>A	c.(382-384)CGC>CAC	p.R128H	uc003yak.1_Intron|PI15_uc003yam.2_Missense_Mutation_p.R128H	NM_015886	NP_056970	O43692	PI15_HUMAN	protease inhibitor 15 preproprotein	128						extracellular region	peptidase inhibitor activity			central_nervous_system(2)|ovary(1)	3	Breast(64;0.137)		BRCA - Breast invasive adenocarcinoma(89;0.104)|Epithelial(68;0.118)			CTATCTGTACGCACTGGAAGG	0.403000													18	113					0	0	9.7654e-05	0	0
LPAR4	2846	broad.mit.edu	37	X	78010399	78010399	+	Silent	SNP	C	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chrX:78010399C>T	uc010nme.2	+	2	438	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	11	Extracellular (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						ACTTCCAATTCCAAGATTCAA	0.453000													15	27					0	0	0.000308642	0	0
MAGEC3	139081	broad.mit.edu	37	X	140984915	140984915	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chrX:140984915T>G	uc011mwp.1	+	7	1371	c.1371T>G	c.(1369-1371)GAT>GAG	p.D457E	MAGEC3_uc004fbs.2_Missense_Mutation_p.D159E|MAGEC3_uc010nsj.2_Missense_Mutation_p.D159E	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	457	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATGCCCTGGATGAAAAGGTGG	0.483000													8	26					0	0	0.000274275	0	0
PRDX1	5052	broad.mit.edu	37	1	45977053	45977054	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr1:45977053_45977054insT	uc001cnz.2	-	5	579_580	c.547_548insA	c.(547-549)ACCfs	p.T183fs	PRDX1_uc001coa.2_Frame_Shift_Ins_p.T183fs|PRDX1_uc001cob.2_Frame_Shift_Ins_p.T183fs|PRDX1_uc001coc.2_Frame_Shift_Ins_p.T183fs	NM_181697	NP_859048	Q06830	PRDX1_HUMAN	peroxiredoxin 1	183					cell proliferation|cell redox homeostasis|hydrogen peroxide catabolic process|skeletal system development	melanosome|mitochondrion|nucleus	protein binding|thioredoxin peroxidase activity				0	Acute lymphoblastic leukemia(166;0.155)					AGGCTTGATGGTATCACTGCCA	0.495													33	195	---	---	---	---					
DGKZ	8525	broad.mit.edu	37	11	46387931	46387933	+	In_Frame_Del	DEL	CCT	-	-			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr11:46387931_46387933delCCT	uc001ncn.1	+	2	250_252	c.125_127delCCT	c.(124-129)GCCTCC>GCC	p.S45del	DGKZ_uc001nch.1_Intron|DGKZ_uc010rgq.1_Intron|DGKZ_uc001ncj.1_Intron|DGKZ_uc010rgr.1_Intron|DGKZ_uc001nck.1_Intron|DGKZ_uc001ncl.2_Intron|DGKZ_uc001ncm.2_Intron|DGKZ_uc009yky.1_Intron|DGKZ_uc010rgs.1_Intron|DGKZ_uc001nci.1_Intron	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	45					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		GCTGGGCAGGCCTCCTCCTCACT	0.759													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	98850722	98850722	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr12:98850722delC	uc009ztm.1	-	1	202	c.13delG	c.(13-15)GTCfs	p.V5fs						Homo sapiens cDNA FLJ35312 fis, clone PROST2010545, highly similar to Sodium/hydrogen exchanger 7.																		TTCTCAGTGACGAGCTCCTCC	0.587													2	4	---	---	---	---					
TP53	7157	broad.mit.edu	37	17	7579399	7579399	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr17:7579399delA	uc002gim.2	-	4	482	c.288delT	c.(286-288)TCTfs	p.S96fs	TP53_uc002gig.1_Frame_Shift_Del_p.S96fs|TP53_uc002gih.2_Frame_Shift_Del_p.S96fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.S96fs|TP53_uc010cni.1_Frame_Shift_Del_p.S96fs|TP53_uc002gij.2_Frame_Shift_Del_p.S96fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.S57fs|TP53_uc010cnk.1_Frame_Shift_Del_p.S111fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	96	Interaction with WWOX.		S -> C (in a sporadic cancer; somatic mutation).|S -> P (in a sporadic cancer; somatic mutation).|S -> F (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.S96F(3)|p.G59fs*23(3)|p.V73fs*9(1)|p.S96fs*52(1)|p.S96fs*53(1)|p.S96P(1)|p.W91fs*13(1)|p.S96C(1)|p.P13fs*18(1)|p.S33fs*23(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGGAAGGGACAGAAGATGACA	0.637		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			7	41	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684390	26684391	+	Splice_Site	INS	-	C	C	rs148075904	by1000genomes	TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr17:26684390_26684391insC	uc002haz.2	-	3	211	c.79_splice	c.e3+0	p.P27_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GCACAGAGCGGCTTTGCCACCG	0.762													7	10	---	---	---	---					
PABPC1	26986	broad.mit.edu	37	8	101721933	101721933	+	Frame_Shift_Del	DEL	T	-	-	rs112966887		TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr8:101721933delT	uc003yjs.1	-	8	1503	c.999delA	c.(997-999)AAAfs	p.K333fs	PABPC1_uc011lhc.1_Frame_Shift_Del_p.K301fs|PABPC1_uc011lhd.1_Frame_Shift_Del_p.K288fs|PABPC1_uc003yjt.1_Frame_Shift_Del_p.K330fs|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	333	RRM 4.				mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			AACCAAACCCTTTGCTGCGAC	0.383													9	74	---	---	---	---					
SMC2	10592	broad.mit.edu	37	9	106862421	106862422	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FS-A1Z4-06A-11D-A197-08	TCGA-FS-A1Z4-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b80a0277-7426-44ec-871f-363e9db7af50	ea52816d-f4fd-4a43-b004-20dc0f4cb59d	g.chr9:106862421_106862422insA	uc004bbv.2	+	6	816_817	c.528_529insA	c.(526-531)TACAAAfs	p.Y176fs	SMC2_uc004bbu.1_Frame_Shift_Ins_p.Y176fs|SMC2_uc004bbw.2_Frame_Shift_Ins_p.Y176fs|SMC2_uc011lvl.1_Frame_Shift_Ins_p.Y176fs|SMC2_uc010mtg.1_Frame_Shift_Ins_p.Y31fs|SMC2_uc010mth.1_Frame_Shift_Ins_p.Y126fs|SMC2_uc004bbx.2_Frame_Shift_Ins_p.Y176fs	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	176_177	Potential.				cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity			ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						TGTATGAATACAAAAAAATAGC	0.317													9	87	---	---	---	---					
