Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TAS1R1	80835	broad.mit.edu	37	1	6636587	6636587	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:6636587G>A	uc001ant.2	+	4	1373	c.1373G>A	c.(1372-1374)GGA>GAA	p.G458E	TAS1R1_uc001anu.2_Missense_Mutation_p.G204E|TAS1R1_uc001anv.2_Missense_Mutation_p.G204E|TAS1R1_uc001anw.2_Intron	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	458	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		GACTGGAATGGACCCAAGTGG	0.483000													21	59					0	0	1	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	17945879	17945879	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:17945879C>T	uc001ban.2	+	10	1040	c.881C>T	c.(880-882)TCG>TTG	p.S294L	ARHGEF10L_uc009vpe.1_Missense_Mutation_p.S255L|ARHGEF10L_uc001bao.2_Missense_Mutation_p.S255L|ARHGEF10L_uc001bap.2_Missense_Mutation_p.S255L|ARHGEF10L_uc010ocr.1_Missense_Mutation_p.S52L|ARHGEF10L_uc001baq.2_Missense_Mutation_p.S60L|ARHGEF10L_uc010ocs.1_Missense_Mutation_p.S72L|ARHGEF10L_uc001bar.2_Missense_Mutation_p.S72L	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	294					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		GTCAGCGTTTCGGACATCAAG	0.657000													5	18					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43778232	43778232	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:43778232C>T	uc001ciu.2	+	12	1966	c.1887C>T	c.(1885-1887)GGC>GGT	p.G629G	TIE1_uc010okd.1_Silent_p.G629G|TIE1_uc010oke.1_Silent_p.G584G|TIE1_uc009vwq.2_Silent_p.G585G|TIE1_uc010okf.1_Silent_p.G274G|TIE1_uc010okg.1_Silent_p.G274G	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	629	Fibronectin type-III 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCCTCCTGGGCCCGGCCTCGC	0.672000													15	45					0	0	1	0	0
MAST2	23139	broad.mit.edu	37	1	46498298	46498298	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:46498298G>A	uc001cov.2	+	26	3728	c.3445G>A	c.(3445-3447)GCA>ACA	p.A1149T	MAST2_uc001cow.2_Missense_Mutation_p.A1149T|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1149	PDZ.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GGCCAGTGAGGCAGGGCTTCG	0.572000													15	25					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47398693	47398693	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:47398693C>T	uc001cqp.3	-	10	1300	c.1249G>A	c.(1249-1251)GGC>AGC	p.G417S	CYP4A11_uc001cqq.2_Missense_Mutation_p.G417S	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	417					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TGGTGAAGGCCATAAATGGAG	0.517000													64	215					0	0	1	0	0
SLC1A7	6512	broad.mit.edu	37	1	53558273	53558273	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:53558273G>A	uc001cuy.2	-	7	1152	c.984C>T	c.(982-984)ATC>ATT	p.I328I	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	328						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GGATGCCACGGATGAAGACGA	0.632000													10	26					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037969	75037969	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:75037969C>T	uc001dgg.2	-	14	3644	c.3425G>A	c.(3424-3426)GGG>GAG	p.G1142E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1142	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCCTAGAAGCCCTGGATTGTC	0.458000													8	44					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89637521	89637521	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:89637521G>A	uc001dna.2	-	2	237	c.98C>T	c.(97-99)GCC>GTC	p.A33V		NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	33	Helical; (Potential).					integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		CTGTGTAATGGCAGACAGGAT	0.512000													30	67					0	0	1	0	0
EPS8L3	79574	broad.mit.edu	37	1	110301984	110301984	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:110301984T>A	uc001dyr.1	-	5	426	c.281A>T	c.(280-282)GAC>GTC	p.D94V	EPS8L3_uc001dys.1_Missense_Mutation_p.D94V|EPS8L3_uc001dyq.1_Missense_Mutation_p.D94V|EPS8L3_uc009wfm.1_Missense_Mutation_p.D60V|EPS8L3_uc009wfn.1_Missense_Mutation_p.D60V|EPS8L3_uc009wfo.1_Missense_Mutation_p.D41V	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	94						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		CTGGATGCTGTCTAGGCGGTA	0.597000													21	79					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151112559	151112559	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:151112559G>A	uc001ewu.2	-	4	426	c.126C>T	c.(124-126)TCC>TCT	p.S42S	SEMA6C_uc001ewv.2_Silent_p.S42S|SEMA6C_uc001eww.2_Silent_p.S42S|SEMA6C_uc010pcq.1_Silent_p.S42S|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	42	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			AGGATAATGGGGAAGTACCTT	0.527000													7	17					0	0	1	0	0
LMNA	4000	broad.mit.edu	37	1	156105739	156105739	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:156105739C>T	uc001fni.2	+	6	1233	c.984C>T	c.(982-984)GCC>GCT	p.A328A	LMNA_uc001fnf.1_Silent_p.A328A|LMNA_uc001fng.2_Silent_p.A328A|LMNA_uc001fnh.2_Silent_p.A328A|LMNA_uc009wro.1_Silent_p.A328A|LMNA_uc010pgz.1_Silent_p.A216A|LMNA_uc001fnj.2_Silent_p.A247A|LMNA_uc001fnk.2_Silent_p.A229A|LMNA_uc009wrp.2_Missense_Mutation_p.P56L|LMNA_uc010pha.1_5'UTR	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	328	Coil 2.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					ACTCACTGGCCCGTGAGCGGG	0.657000									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				7	30					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156510631	156510631	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:156510631C>G	uc001fpf.2	-	23	2683	c.2608G>C	c.(2608-2610)GCT>CCT	p.A870P		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	870					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCTGCCTCAGCCAAGAAGTCT	0.537000													18	38					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158670049	158670049	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:158670049G>A	uc001fsu.1	-	1	394	c.394C>T	c.(394-396)CCC>TCC	p.P132S		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ATGATAGAGGGATAATGAAGA	0.478000													16	37					0	0	1	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799751	159799751	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:159799751C>T	uc001fue.3	+	2	346	c.136C>T	c.(136-138)CGT>TGT	p.R46C		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	46	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					CTTCCAAGTCCGTGAGGCTAT	0.607000													34	107					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179659832	179659832	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:179659832G>A	uc001gnf.1	+	17	2950	c.2700G>A	c.(2698-2700)GTG>GTA	p.V900V	TDRD5_uc010pnp.1_Silent_p.V954V|TDRD5_uc001gnh.1_Silent_p.V455V	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	900					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CTTTTCCAGTGGAAAGCTCAC	0.403000													28	42					0	0	1	0	0
DHX9	1660	broad.mit.edu	37	1	182835669	182835669	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:182835669T>C	uc001gpr.2	+	13	1586	c.1423T>C	c.(1423-1425)TTT>CTT	p.F475L	DHX9_uc001gps.2_Missense_Mutation_p.F261L	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	475	Helicase ATP-binding.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						CAGCGTTCGATTTGAGTCTAT	0.428000													59	132					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207697352	207697352	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:207697352G>A	uc001hfy.2	+	5	1024	c.884G>A	c.(883-885)AGG>AAG	p.R295K	CR1_uc009xcl.1_Missense_Mutation_p.R295K|CR1_uc001hfx.2_Missense_Mutation_p.R295K|CR1_uc009xcj.1_Missense_Mutation_p.R295K|CR1_uc009xck.1_Missense_Mutation_p.R295K	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	295	Sushi 5.|Extracellular (Potential).|Sushi 4.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGCTGCTCCAGGGGTGAGTCT	0.567000													24	57					0	0	1	0	0
KIAA1383	54627	broad.mit.edu	37	1	232943052	232943052	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:232943052G>A	uc001hvh.2	+	1	2415	c.2283G>A	c.(2281-2283)GTG>GTA	p.V761V		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	619										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				AAGAAGTTGTGAGTCCTGCAA	0.348000													22	58					0	0	1	0	0
ACBD7	414149	broad.mit.edu	37	10	15120537	15120537	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:15120537C>T	uc001inv.2	-	4	307	c.259G>A	c.(259-261)GGA>AGA	p.G87R	ACBD7_uc010qby.1_Intron	NM_001039844	NP_001034933	Q8N6N7	ACBD7_HUMAN	acyl-Coenzyme A binding domain containing 7	87	ACB.						fatty-acyl-CoA binding				0						TTCTAAATTCCGTATTTTTCT	0.388000													21	33					0	0	1	0	0
LOC387646	387646	broad.mit.edu	37	10	27538569	27538569	+	Missense_Mutation	SNP	G	A	A	rs11015624	by1000genomes	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:27538569G>A	uc001its.2	-	1	2667	c.824C>T	c.(823-825)CCT>CTT	p.P275L		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						CAGGTCCAAAGGTTGAACTGT	0.478000													5	109					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37506734	37506734	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:37506734G>A	uc001iza.1	+	33	3126	c.3027G>A	c.(3025-3027)GTG>GTA	p.V1009V		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1065	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AGTTAGAAGTGAAACAACAAC	0.313000													3	17					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61828507	61828507	+	Silent	SNP	A	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:61828507A>C	uc001jky.2	-	37	12324	c.12132T>G	c.(12130-12132)GGT>GGG	p.G4044G	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4044					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAGGCTGGCCACCCCGGGAAG	0.488000													44	45					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73567455	73567455	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:73567455G>A	uc001jrx.3	+	57	8868	c.8491G>A	c.(8491-8493)GAG>AAG	p.E2831K	CDH23_uc001jsg.3_Missense_Mutation_p.E591K|CDH23_uc001jsh.3_Missense_Mutation_p.E591K|CDH23_uc001jsi.3_Missense_Mutation_p.E591K	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2831	Cadherin 26.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CACACTGCAGGAGGTGCGCGT	0.612000													6	8					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	96068343	96068343	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:96068343C>T	uc001kjk.2	+	27	6524	c.5890C>T	c.(5890-5892)CGA>TGA	p.R1964*	PLCE1_uc010qnx.1_Nonsense_Mutation_p.R1948*|PLCE1_uc001kjm.2_Nonsense_Mutation_p.R1656*|PLCE1_uc001kjp.2_Nonsense_Mutation_p.R322*	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1964					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TCCAGGATATCGACATCTTCA	0.403000													29	30					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96484232	96484232	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:96484232C>T	uc001kjv.3	+	7	1417	c.1091C>T	c.(1090-1092)ACC>ATC	p.T364I	CYP2C18_uc001kjw.3_Missense_Mutation_p.T305I|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	364					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CTCCTCCCCACCAACCTGCCC	0.507000													39	65					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96748665	96748665	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:96748665C>T	uc001kka.3	+	9	1378	c.1353C>T	c.(1351-1353)TCC>TCT	p.S451S	CYP2C9_uc009xut.2_Silent_p.S449S	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	451					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TCCTGACCTCCATTTTACAGA	0.478000													27	46					0	0	1	0	0
LRRC27	80313	broad.mit.edu	37	10	134161711	134161711	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr10:134161711C>T	uc010quw.1	+	6	972	c.777C>T	c.(775-777)ATC>ATT	p.I259I	LRRC27_uc001llf.2_Silent_p.I259I|LRRC27_uc010quv.1_Silent_p.I259I|LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Silent_p.I259I|LRRC27_uc001llj.2_Silent_p.I197I|LRRC27_uc001llk.3_Silent_p.I132I	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	259										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		AGGAGGAGATCAGGCGCTTTT	0.542000													19	18					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1092136	1092136	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:1092136G>A	uc001lsx.1	+	30	3982	c.3955G>A	c.(3955-3957)GAC>AAC	p.D1319N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1319						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CAGTGGCAGCGACGACGGTGA	0.587000													6	16					0	0	1	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													6	39					0	0	1	0	0
ELF5	2001	broad.mit.edu	37	11	34502410	34502410	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:34502410G>A	uc001mvo.1	-	6	840	c.610C>T	c.(610-612)CGG>TGG	p.R204W	ELF5_uc001mvp.1_Missense_Mutation_p.R194W|ELF5_uc009ykd.1_Missense_Mutation_p.R99W	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	204	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				TTAACCACCCGAAAAATTCCT	0.428000													26	67					0	0	1	0	0
AGBL2	79841	broad.mit.edu	37	11	47712109	47712109	+	Missense_Mutation	SNP	G	A	A	rs113540514	byFrequency	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:47712109G>A	uc001ngg.2	-	9	1250	c.1150C>T	c.(1150-1152)CCA>TCA	p.P384S	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Missense_Mutation_p.P346S|AGBL2_uc001ngh.1_Missense_Mutation_p.P328S	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	384					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						TGGTCATATGGAAACTGAATG	0.458000													23	59					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735333	55735333	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:55735333G>A	uc010rit.1	-	1	607	c.607C>T	c.(607-609)CTG>TTG	p.L203L		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ACAATCAACAGAAATGGCACC	0.423000													6	18					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66191069	66191069	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:66191069C>T	uc001ohx.1	+	6	1005	c.829C>T	c.(829-831)CAG>TAG	p.Q277*	NPAS4_uc010rpc.1_Nonsense_Mutation_p.Q67*	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	277					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TGGAGATATTCAGGCAGAGAT	0.532000													27	29					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66357991	66357991	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:66357991G>A	uc001oiq.3	-	1	2564	c.2496C>T	c.(2494-2496)GCC>GCT	p.A832A	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	832										ovary(1)|skin(1)	2						GATCCTTCAGGGCCGAGACCA	0.582000													45	71					0	0	1	0	0
CAPN5	726	broad.mit.edu	37	11	76796030	76796030	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:76796030C>T	uc001oxx.2	+	2	283	c.98C>T	c.(97-99)CCC>CTC	p.P33L	CAPN5_uc009yup.2_Missense_Mutation_p.P33L|CAPN5_uc009yuq.2_Missense_Mutation_p.P69L|CAPN5_uc001oxy.2_Missense_Mutation_p.P73L	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	33	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						CCCCTCTTCCCCGCCACTGAC	0.632000													13	15					0	0	1	0	0
MMP10	4319	broad.mit.edu	37	11	102643649	102643649	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:102643649C>T	uc001phg.1	-	8	1177	c.1155G>A	c.(1153-1155)AGG>AGA	p.R385R		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	385					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		CATCAATTTTCCTTATGGTTG	0.413000													34	41					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121461713	121461713	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:121461713C>T	uc001pxx.2	+	31	4297	c.4217C>T	c.(4216-4218)TCA>TTA	p.S1406L	SORL1_uc010rzp.1_Missense_Mutation_p.S252L|SORL1_uc010rzq.1_Missense_Mutation_p.S21L	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1406	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TTCTCAGATTCACATATTCTT	0.507000											OREG0021431	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	47	97					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121490524	121490524	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr11:121490524G>A	uc001pxx.2	+	43	5867	c.5787G>A	c.(5785-5787)CCG>CCA	p.P1929P	SORL1_uc010rzp.1_Silent_p.P775P|SORL1_uc010rzq.1_Silent_p.P544P	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1929	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AGATGATCCCGGACAGCAGGC	0.532000													26	31					0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6691339	6691339	+	Silent	SNP	A	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:6691339A>G	uc001qpo.2	-	30	4643	c.4479T>C	c.(4477-4479)CTT>CTC	p.L1493L	CHD4_uc001qpn.2_Silent_p.L1486L|CHD4_uc001qpp.2_Silent_p.L1518L|uc001qpq.1_Intron|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1493					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CAATTCTAGTAAGGACATGCT	0.448000													27	15					0	0	1	0	0
CLEC6A	93978	broad.mit.edu	37	12	8612264	8612264	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:8612264A>C	uc001qum.1	+	3	310	c.193A>C	c.(193-195)ACC>CCC	p.T65P		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	65	Extracellular (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					TTCAAGTCTCACCTGCTTCAG	0.393000													56	33					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9318777	9318777	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:9318777C>T	uc001qvl.2	-	18	2158	c.2129G>A	c.(2128-2130)AGA>AAA	p.R710K	PZP_uc009zgl.2_Missense_Mutation_p.R579K|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Missense_Mutation_p.R42K	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AACATATGGTCTCTCTACTAC	0.388000													28	20					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506690	11506690	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:11506690C>T	uc001qzw.1	-	3	384	c.347G>A	c.(346-348)GGA>GAA	p.G116E	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	177	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGG	0.612000													199	327					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906478	13906478	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:13906478C>T	uc001rbt.2	-	3	962	c.783G>A	c.(781-783)CTG>CTA	p.L261L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	261	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCCCTGCCACCAGACTGGGCA	0.537000													35	10					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21196407	21196407	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:21196407A>T	uc010sin.1	+	6	726	c.726A>T	c.(724-726)GAA>GAT	p.E242D	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.E289D	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	242						membrane	transporter activity				0						CACAGAAAGAAAGGAAAGTTT	0.323000													24	15					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21325643	21325643	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:21325643G>A	uc001req.3	+	3	248	c.144G>A	c.(142-144)ATG>ATA	p.M48I		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	48	Helical; Name=1; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CAATTATTATGAAAAGTTCCA	0.348000													23	17					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48379519	48379519	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:48379519C>T	uc001rqu.2	-	25	1853	c.1672G>A	c.(1672-1674)GGA>AGA	p.G558R	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.G489R	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	558	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	ACCCGGGCTCCAGGAAGGCCA	0.657000													11	11					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49445878	49445878	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:49445878G>A	uc001rta.3	-	10	1588	c.1588C>T	c.(1588-1590)CCT>TCT	p.P530S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	530	15 X 5 AA repeats of S/P-P-P-E/P-E/A.|Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCAAGTGCAGGAGATGGGGGT	0.587000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			30	10					0	0	1	0	0
MDM1	56890	broad.mit.edu	37	12	68709041	68709041	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:68709041G>A	uc001stz.2	-	9	1322	c.1186C>T	c.(1186-1188)CCT>TCT	p.P396S	MDM1_uc010stc.1_Missense_Mutation_p.P361S|MDM1_uc009zqv.1_Missense_Mutation_p.P116S	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	396						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		TGGCTTGTAGGATCTCTGCGT	0.353000													40	26					0	0	1	0	0
HSPB8	26353	broad.mit.edu	37	12	119617332	119617332	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:119617332G>A	uc001txb.2	+	1	738	c.215G>A	c.(214-216)GGC>GAC	p.G72D	HSPB8_uc001txc.2_Missense_Mutation_p.G72D	NM_014365	NP_055180	Q9UJY1	HSPB8_HUMAN	heat shock 22kDa protein 8	72					cell death|response to heat	cytoplasm|nucleus	identical protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GTGCCCCGGGGCCCCACTGCC	0.682000													57	25					0	0	1	0	0
VPS33A	65082	broad.mit.edu	37	12	122748207	122748207	+	Missense_Mutation	SNP	G	A	A	rs150472752		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:122748207G>A	uc001ucd.2	-	3	321	c.208C>T	c.(208-210)CGT>TGT	p.R70C	VPS33A_uc001ucc.2_RNA|VPS33A_uc001uce.2_Missense_Mutation_p.R70C	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	70					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		GCCGGCAAACGATTTCCTTTA	0.373000													23	14					0	0	1	0	0
VPS37B	79720	broad.mit.edu	37	12	123351825	123351825	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr12:123351825G>A	uc001udl.2	-	4	799	c.696C>T	c.(694-696)GCC>GCT	p.A232A		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	232	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		GGTACGGCACGGCCTGTCCCG	0.687000													6	6					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751421	19751421	+	Silent	SNP	G	A	A	rs142245280		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr13:19751421G>A	uc009zzj.2	-	4	751	c.702C>T	c.(700-702)ATC>ATT	p.I234I		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	234					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TGGAGGACACGATCTGCCCAA	0.567000													69	99					0	0	1	0	0
GJB2	2706	broad.mit.edu	37	13	20763301	20763301	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr13:20763301G>A	uc001umy.2	-	2	635	c.420C>T	c.(418-420)ATC>ATT	p.I140I		NM_004004	NP_003995	P29033	CXB2_HUMAN	gap junction protein beta 2	140	Helical; (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|sensory perception of sound|transport	connexon complex|ER-Golgi intermediate compartment|integral to membrane					0		all_cancers(29;3.95e-22)|all_epithelial(30;2.36e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000435)|Epithelial(112;0.000722)|OV - Ovarian serous cystadenocarcinoma(117;0.0096)|Lung(94;0.0236)|LUSC - Lung squamous cell carcinoma(192;0.0738)		CCCGGAAGAAGATGCTGCTTG	0.527000									Keratitis_Ichthyosis_and_Deafness_syndrome		OREG0022282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	68					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43986164	43986164	+	Silent	SNP	C	T	T	rs139717285		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr13:43986164C>T	uc001uza.3	-	5	396	c.96G>A	c.(94-96)GCG>GCA	p.A32A	ENOX1_uc001uzb.3_Silent_p.A32A|ENOX1_uc001uzc.3_Silent_p.A32A	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	32					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TCGTGTCTATCGCTATACTCC	0.493000													12	43					0	0	1	0	0
ABCC4	10257	broad.mit.edu	37	13	95830017	95830017	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr13:95830017G>A	uc001vmd.3	-	13	1790	c.1671C>T	c.(1669-1671)CTC>CTT	p.L557L	ABCC4_uc010afk.2_Silent_p.L557L|ABCC4_uc001vme.2_Silent_p.L557L|ABCC4_uc010tih.1_Silent_p.L482L|ABCC4_uc001vmf.2_Silent_p.L514L|ABCC4_uc010afl.1_Silent_p.L514L|ABCC4_uc010afm.1_Silent_p.L570L	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	557	ABC transporter 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	GATCGTCCAGGAGATAGATGT	0.438000													29	38					0	0	1	0	0
ADPRHL1	113622	broad.mit.edu	37	13	114083350	114083350	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr13:114083350G>A	uc001vtq.1	-	4	650	c.563C>T	c.(562-564)CCC>CTC	p.P188L	ADPRHL1_uc001vtp.1_Missense_Mutation_p.P106L	NM_138430	NP_612439	Q8NDY3	ARHL1_HUMAN	ADP-ribosylhydrolase like 1 isoform 1	188					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.0195)|GBM - Glioblastoma multiforme(44;0.116)			CTGGACCAGGGGCTTTCCTTG	0.672000													16	9					0	0	1	0	0
RNASE9	390443	broad.mit.edu	37	14	21025135	21025135	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr14:21025135C>T	uc010aho.2	-	4	253	c.94G>A	c.(94-96)GAT>AAT	p.D32N	RNASE9_uc001vxq.3_Missense_Mutation_p.D37N|RNASE9_uc010ahp.2_Missense_Mutation_p.D37N|RNASE9_uc010ahq.2_Missense_Mutation_p.D37N|RNASE9_uc010ahr.2_Missense_Mutation_p.D37N|RNASE9_uc010ahs.2_Missense_Mutation_p.D32N|RNASE9_uc010aht.2_Missense_Mutation_p.D32N|RNASE9_uc010ahu.2_Missense_Mutation_p.D32N	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	32						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		AAATCAAAATCTGTATCCACC	0.438000													16	17					0	0	1	0	0
KIAA0317	9870	broad.mit.edu	37	14	75150229	75150229	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr14:75150229T>C	uc001xqb.2	-	5	756	c.251A>G	c.(250-252)TAT>TGT	p.Y84C	KIAA0317_uc010tut.1_5'UTR|KIAA0317_uc001xqc.2_Missense_Mutation_p.Y84C|KIAA0317_uc001xqd.1_RNA	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	84	Filamin.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		CCCGTTCTTATAGAATAACTG	0.502000													5	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20666465	20666465	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:20666465G>A	uc001ytg.2	-	7	873	c.164C>T	c.(163-165)CCT>CTT	p.P55L	uc010tyx.1_RNA|uc001yth.3_Missense_Mutation_p.P55L|uc010tyy.1_Missense_Mutation_p.P55L|uc010tyz.1_Intron					RecName: Full=Putative HERC2-like protein 3;																		AATCTCGACAGGAGACAGCGG	0.428000													4	40					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34021120	34021120	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:34021120G>A	uc001zhi.2	+	47	7166	c.7096G>A	c.(7096-7098)GTG>ATG	p.V2366M	RYR3_uc010bar.2_Missense_Mutation_p.V2366M	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2366	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGCACCTATGGTGCTGTTCTT	0.473000													8	18					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34040399	34040399	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:34040399G>A	uc001zhi.2	+	54	8144	c.8074G>A	c.(8074-8076)GGA>AGA	p.G2692R	RYR3_uc010bar.2_Missense_Mutation_p.G2692R	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2692	3.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GACCAAAGAGGGAGAAGCTTT	0.547000													15	30					0	0	1	0	0
TMCO5A	145942	broad.mit.edu	37	15	38233389	38233389	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:38233389G>A	uc001zjw.2	+	6	530	c.427G>A	c.(427-429)GAG>AAG	p.E143K	TMCO5A_uc001zjv.1_Missense_Mutation_p.E143K|TMCO5A_uc010bbc.1_Missense_Mutation_p.E143K	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	143	Potential.					integral to membrane				central_nervous_system(1)	1						TGCATGCCAAGAGAAGGAGCT	0.433000													12	19					0	0	1	0	0
FSIP1	161835	broad.mit.edu	37	15	39910314	39910314	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:39910314A>T	uc001zki.2	-	11	1539	c.1321T>A	c.(1321-1323)TTC>ATC	p.F441I		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	441										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		AGCTGGGGGAACACAGGTGTT	0.378000													26	52					0	0	1	0	0
FSIP1	161835	broad.mit.edu	37	15	40005658	40005658	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:40005658A>C	uc001zki.2	-	10	1393	c.1175T>G	c.(1174-1176)ATG>AGG	p.M392R		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	392										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		ATTTTCCTTCATCATTTTCAG	0.244000													27	74					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43498698	43498698	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:43498698C>T	uc001zra.3	-	10	1748	c.1448G>A	c.(1447-1449)AGC>AAC	p.S483N	EPB42_uc001zqz.3_Missense_Mutation_p.S150N|EPB42_uc010bde.2_Missense_Mutation_p.S328N|EPB42_uc001zrb.3_Missense_Mutation_p.S513N|EPB42_uc010udm.1_Missense_Mutation_p.S405N	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	483					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GGGTAGGGAGCTGGGTGCTTT	0.552000													20	90					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84373227	84373227	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:84373227G>A	uc002bjz.3	+	3	380	c.156G>A	c.(154-156)GGG>GGA	p.G52G	ADAMTSL3_uc002bjy.1_Silent_p.G52G|ADAMTSL3_uc010bmt.1_Silent_p.G52G|ADAMTSL3_uc010bmu.1_Silent_p.G52G	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	52						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ACACAACAGGGGAGCAGTTCC	0.463000													80	128					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86286780	86286780	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:86286780G>A	uc002blv.1	+	36	8286	c.8116G>A	c.(8116-8118)GAG>AAG	p.E2706K	AKAP13_uc002blu.1_Missense_Mutation_p.E2710K|AKAP13_uc002blw.1_Missense_Mutation_p.E1171K|AKAP13_uc002blx.1_Missense_Mutation_p.E951K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2706	Interaction with ESR1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CAGTCCTGAGGAGCCCCCCTC	0.507000													54	56					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100332406	100332406	+	RNA	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr15:100332406C>T	uc010urx.1	-	5		c.1786G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TCCAGAGTGGCCTTATGGACC	0.542000													31	109					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83704457	83704457	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr16:83704457G>A	uc002fgx.2	+	9	1284	c.1164G>A	c.(1162-1164)AAG>AAA	p.K388K	CDH13_uc010vns.1_Silent_p.K435K|CDH13_uc010vnt.1_Silent_p.K134K|CDH13_uc010vnu.1_Silent_p.K349K	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	388	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TTGAAGATAAGGATGACCCCA	0.483000													22	57					0	0	1	0	0
CBFA2T3	863	broad.mit.edu	37	16	88952473	88952473	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr16:88952473G>A	uc002fmm.1	-	6	975	c.789C>T	c.(787-789)GCC>GCT	p.A263A	CBFA2T3_uc002fml.1_Silent_p.A177A|CBFA2T3_uc010cif.1_Silent_p.A202A|CBFA2T3_uc002fmn.1_Silent_p.A238A	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	263	TAFH.|Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GCTCATGCTGGGCCAAGTACT	0.667000			T	RUNX1	AML								4	4					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347448	89347448	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr16:89347448G>A	uc002fmx.1	-	9	5963	c.5502C>T	c.(5500-5502)CCC>CCT	p.P1834P	ANKRD11_uc002fmy.1_Silent_p.P1834P|ANKRD11_uc002fnc.1_Silent_p.P1834P|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.P1791P	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1834	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CCGGGGGCAGGGGCGCCCTGT	0.622000													16	30					0	0	1	0	0
CDK10	8558	broad.mit.edu	37	16	89761464	89761464	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr16:89761464C>T	uc010cio.2	+	11	961	c.918C>T	c.(916-918)TAC>TAT	p.Y306Y	CDK10_uc002fod.2_Silent_p.Y235Y|CDK10_uc002foe.2_Silent_p.Y235Y|CDK10_uc002fof.2_Intron|CDK10_uc002fog.3_Silent_p.Y235Y|CDK10_uc002foh.3_Silent_p.Y235Y|CDK10_uc002foi.2_RNA	NM_052988	NP_443714	Q15131	CDK10_HUMAN	cyclin-dependent kinase 10 isoform a	306	Protein kinase.				negative regulation of cell proliferation|traversing start control point of mitotic cell cycle		ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(1)	1		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0276)		TGTTCATGTACGACCCTAAGA	0.617000													5	35					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1563755	1563755	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:1563755G>A	uc002fte.2	-	30	4870	c.4756C>T	c.(4756-4758)CAT>TAT	p.H1586Y		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1586						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		ATGCTCTCATGGATCTTCTGC	0.532000													95	237					0	0	1	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4458201	4458201	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:4458201G>A	uc002fyb.3	-	2	311	c.249C>T	c.(247-249)GTC>GTT	p.V83V	MYBBP1A_uc002fxz.3_Silent_p.V83V	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	83	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						TTTCTCGCCCGACCCCGAGTC	0.597000													9	27					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10351246	10351246	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:10351246G>A	uc002gmn.2	-	34	4965	c.4854C>T	c.(4852-4854)ATC>ATT	p.I1618I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1618	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCTTCTTCTTGATCCTCAGAG	0.463000													34	102					0	0	1	0	0
ATPAF2	91647	broad.mit.edu	37	17	17921914	17921914	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:17921914G>A	uc002gse.1	-	8	972	c.819C>T	c.(817-819)ATC>ATT	p.I273I	ATPAF2_uc002gsd.1_Intron|ATPAF2_uc002gsf.1_RNA	NM_145691	NP_663729	Q8N5M1	ATPF2_HUMAN	ATP synthase mitochondrial F1 complex assembly	273					proton-transporting ATP synthase complex assembly	mitochondrion|nuclear speck	protein binding				0	all_neural(463;0.228)					AGCAGAGATGGATGAAGAGGG	0.612000													22	59					0	0	1	0	0
SLC5A10	125206	broad.mit.edu	37	17	18923163	18923163	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:18923163C>T	uc002guu.1	+	13	1589	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F	SLC5A10_uc002gur.1_Silent_p.F486F|SLC5A10_uc002gut.1_Silent_p.F532F|SLC5A10_uc002guv.1_Silent_p.F489F|SLC5A10_uc010vyl.1_Silent_p.F480F	NM_001042450	NP_001035915	A0PJK1	SC5AA_HUMAN	solute carrier family 5 (sodium/glucose	516	Helical; (Potential).				sodium ion transport|transmembrane transport	integral to membrane	transporter activity			ovary(1)	1						ACCTGCACTTCGCTGTCGCCC	0.657000													6	17					0	0	1	0	0
SARM1	23098	broad.mit.edu	37	17	26684704	26684704	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:26684704C>T	uc010wah.1	+	1	18	c.11C>T	c.(10-12)TCT>TTT	p.S4F	POLDIP2_uc002haz.2_5'Flank|POLDIP2_uc010wag.1_5'Flank|TMEM199_uc002hba.2_Missense_Mutation_p.S4F	NM_152464	NP_689677	Q6SZW1	SARM1_HUMAN	transmembrane protein 199	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		ATGGCGTCCTCTTTGCTTGCG	0.687000													16	51					0	0	1	0	0
NLE1	54475	broad.mit.edu	37	17	33466948	33466948	+	Silent	SNP	G	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:33466948G>T	uc002hiy.1	-	3	328	c.300C>A	c.(298-300)GTC>GTA	p.V100V	NLE1_uc010ctn.1_5'UTR|NLE1_uc002hiz.1_5'UTR	NM_018096	NP_060566	Q9NVX2	NLE1_HUMAN	Notchless gene homolog isoform a	100						nucleolus				breast(3)|ovary(1)	4		Ovarian(249;0.17)				TCACAGCCCGGACTCTGAAGA	0.567000													18	22					6.94344e-10	6.99769e-10	1	1	0
DHX40P1	653645	broad.mit.edu	37	17	58064912	58064912	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:58064912G>A	uc002iyf.2	-	10	801	c.566C>T	c.(565-567)CCA>CTA	p.P189L	uc002iye.1_Intron	NR_002924				Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene, mRNA (cDNA clone IMAGE:5170263).												0						TGTCAGATGTGGAGGCAAAGG	0.403000													17	31					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62050058	62050058	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:62050058C>T	uc002jds.1	-	1	221	c.144G>A	c.(142-144)GAG>GAA	p.E48E		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	48					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GTTCGGGCTCCTCAATCTCCA	0.637000													3	11					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73753115	73753115	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:73753115G>A	uc002jpg.2	+	38	5332	c.5145G>A	c.(5143-5145)AAG>AAA	p.K1715K	ITGB4_uc002jph.2_Silent_p.K1645K|ITGB4_uc002jpi.3_Silent_p.K1645K|ITGB4_uc002jpj.2_Silent_p.K1698K|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1715	Fibronectin type-III 4.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACAAGTTCAAGGTGCAGGCCA	0.652000													13	32					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004113	74004113	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:74004113C>T	uc002jqi.2	-	22	5401	c.5173G>A	c.(5173-5175)GAG>AAG	p.E1725K	EVPL_uc010wss.1_Missense_Mutation_p.E1747K|EVPL_uc010wst.1_Missense_Mutation_p.E1195K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1725	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GTGGTGACCTCCTCCCAGTCA	0.652000													11	31					0	0	1	0	0
EXOC7	23265	broad.mit.edu	37	17	74094054	74094054	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:74094054G>A	uc002jqs.2	-	5	558	c.463C>T	c.(463-465)CGC>TGC	p.R155C	EXOC7_uc010dgv.1_Missense_Mutation_p.R102C|EXOC7_uc002jqq.2_Missense_Mutation_p.R155C|EXOC7_uc010wsw.1_Missense_Mutation_p.R155C|EXOC7_uc010wsx.1_Missense_Mutation_p.R155C|EXOC7_uc002jqr.2_Missense_Mutation_p.R155C|EXOC7_uc010wsv.1_Missense_Mutation_p.R114C|EXOC7_uc002jqu.2_Missense_Mutation_p.R155C	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	155					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			ATCAGGCTGCGAAATTCGGAC	0.582000													10	45					0	0	1	0	0
SGSH	6448	broad.mit.edu	37	17	78190938	78190938	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:78190938G>A	uc002jxz.3	-	2	229	c.142C>T	c.(142-144)CCG>TCG	p.P48S	SGSH_uc002jya.3_5'UTR|SGSH_uc002jxy.2_Missense_Mutation_p.P48S|SGSH_uc010wue.1_Silent_p.P59P	NM_000199	NP_000190	P51688	SPHM_HUMAN	N-sulfoglucosamine sulfohydrolase precursor	48					proteoglycan metabolic process	lysosome	metal ion binding|N-sulfoglucosamine sulfohydrolase activity|sulfuric ester hydrolase activity			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			TCCAGGTGCGGGGTGGCGATG	0.667000													5	5					0	0	1	0	0
AZI1	22994	broad.mit.edu	37	17	79166327	79166327	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr17:79166327G>A	uc002jzp.1	-	20	2705	c.2505C>T	c.(2503-2505)GCC>GCT	p.A835A	AZI1_uc002jzm.1_Silent_p.A262A|AZI1_uc002jzn.1_Silent_p.A832A|AZI1_uc002jzo.1_Silent_p.A796A|AZI1_uc010wum.1_Silent_p.A799A|AZI1_uc002jzq.2_5'UTR	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	835					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CAGCCCTCAGGGCTCGGGTCA	0.701000													5	17					0	0	1	0	0
C18orf8	29919	broad.mit.edu	37	18	21083647	21083647	+	Missense_Mutation	SNP	C	T	T	rs112277818	byFrequency	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr18:21083647C>T	uc010xax.1	+	1	186	c.65C>T	c.(64-66)CCT>CTT	p.P22L	C18orf8_uc010xau.1_5'UTR|C18orf8_uc010xav.1_Missense_Mutation_p.P22L|C18orf8_uc010xaw.1_5'UTR|C18orf8_uc002kul.2_RNA	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	22										ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AAGGCGAACCCTGTCAACTGC	0.567000													7	31					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63430210	63430210	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr18:63430210G>A	uc002ljz.2	+	2	457	c.132G>A	c.(130-132)CGG>CGA	p.R44R	CDH7_uc002lka.2_Silent_p.R44R|CDH7_uc002lkb.2_Silent_p.R44R	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	44	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GGAGGTCCCGGACCAAGCGCA	0.483000													10	27					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6897264	6897264	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:6897264C>T	uc002mfw.2	+	4	381	c.343C>T	c.(343-345)CCC>TCC	p.P115S	EMR1_uc010dvc.2_Missense_Mutation_p.P115S|EMR1_uc010dvb.2_Intron|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Missense_Mutation_p.P115S	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	115	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TTTCTCTTCTCCCACTGGAAA	0.507000													17	34					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082412	9082412	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:9082412C>T	uc002mkp.2	-	1	9607	c.9403G>A	c.(9403-9405)GCC>ACC	p.A3135T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3136	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTCTTCTGGCTGTGGGTTCT	0.483000													33	58					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9088132	9088132	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:9088132G>A	uc002mkp.2	-	1	3887	c.3683C>T	c.(3682-3684)TCA>TTA	p.S1228L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1228	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCCTCCAATGATGTGGCTGG	0.507000													77	185					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9090539	9090539	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:9090539C>T	uc002mkp.2	-	1	1480	c.1276G>A	c.(1276-1278)GGA>AGA	p.G426R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	426	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTTCCTTTCCACTCGTGGAG	0.512000													28	46					0	0	1	0	0
ICAM1	3383	broad.mit.edu	37	19	10394278	10394278	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:10394278C>T	uc002mnq.2	+	3	772	c.453C>T	c.(451-453)CTC>CTT	p.L151L	ICAM1_uc010xle.1_Intron	NM_000201	NP_000192	P05362	ICAM1_HUMAN	intercellular adhesion molecule 1 precursor	151	Ig-like C2-type 2.|Extracellular (Potential).				adhesion to symbiont|heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking|positive regulation of cellular extravasation|regulation of immune response|regulation of leukocyte mediated cytotoxicity|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|virion attachment, binding of host cell surface receptor	extracellular space|integral to plasma membrane	integrin binding|transmembrane receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;2.81e-06)|all cancers(31;6.56e-06)		Natalizumab(DB00108)|Simvastatin(DB00641)	TGGTGCTGCTCCGTGGGGAGA	0.652000													7	18					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060702	16060702	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:16060702G>A	uc010xov.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TCAGCCTAAGGAACAAGGAGC	0.438000													48	85					0	0	1	0	0
KCNN1	3780	broad.mit.edu	37	19	18096193	18096193	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:18096193C>T	uc002nht.2	+	6	1300	c.990C>T	c.(988-990)TCC>TCT	p.S330S	KCNN1_uc010xqa.1_Silent_p.S330S	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	330					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						CCTTCCTCTCCATTGGCTACG	0.587000													9	11					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278332	36278332	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:36278332C>T	uc002obs.1	+	21	2467	c.2382C>T	c.(2380-2382)TCC>TCT	p.S794S	ARHGAP33_uc002obt.1_Silent_p.S819S|ARHGAP33_uc010eel.2_Silent_p.S543S|ARHGAP33_uc002obv.1_Silent_p.S543S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	881					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						CTCCCAACTCCCTAGCACACC	0.682000													5	14					0	0	1	0	0
TYROBP	7305	broad.mit.edu	37	19	36399114	36399114	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:36399114G>A	uc002ocm.2	-	1	73	c.17C>T	c.(16-18)CCC>CTC	p.P6L	TYROBP_uc002ocn.2_Missense_Mutation_p.P6L	NM_003332	NP_003323	O43914	TYOBP_HUMAN	TYRO protein tyrosine kinase binding protein	6					axon guidance|cell junction assembly|cellular defense response|intracellular signal transduction|regulation of immune response	integral to plasma membrane|intracellular	identical protein binding|receptor signaling protein activity				0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCTGCTGCAGGGTTCAAGTCC	0.642000													7	15					0	0	1	0	0
LOC400696	400696	broad.mit.edu	37	19	40172147	40172147	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:40172147C>T	uc010xve.1	+	2	136	c.90C>T	c.(88-90)TTC>TTT	p.F30F	LOC400696_uc010xvf.1_RNA	NM_207646	NP_997529			hypothetical protein LOC400696												0						TCATCCCTTTCGTGTGAGTAC	0.517000													12	24					0	0	1	0	0
CYP2S1	29785	broad.mit.edu	37	19	41703702	41703702	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:41703702G>A	uc002opw.2	+	3	417	c.362G>A	c.(361-363)GGG>GAG	p.G121E	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	121					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						TTCTCCAACGGGGAGCGGTGG	0.547000													11	34					0	0	1	0	0
ATP5SL	55101	broad.mit.edu	37	19	41939227	41939227	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:41939227G>A	uc002oqw.1	-	5	552	c.546C>T	c.(544-546)GCC>GCT	p.A182A	CYP2F1_uc010xvw.1_Intron|ATP5SL_uc002oqu.1_RNA|ATP5SL_uc002oqv.2_Silent_p.A188A|ATP5SL_uc010xwa.1_Intron|ATP5SL_uc002oqx.1_Silent_p.A155A|ATP5SL_uc002oqy.1_Intron|ATP5SL_uc002oqz.1_Intron|ATP5SL_uc002ora.1_Silent_p.A169A|ATP5SL_uc010xwb.1_Silent_p.A161A	NM_018035	NP_060505	Q9NW81	AT5SL_HUMAN	ATP5S-like	182										large_intestine(1)|breast(1)	2						GGGGGCAACCGGCCAGCGAGA	0.677000													13	29					0	0	1	0	0
CD79A	973	broad.mit.edu	37	19	42383132	42383132	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:42383132A>C	uc002orv.2	+	2	337	c.152A>C	c.(151-153)CAC>CCC	p.H51P	CD79A_uc002oru.2_Missense_Mutation_p.H51P	NM_001783	NP_001774	P11912	CD79A_HUMAN	CD79A antigen isoform 1 precursor	51	Ig-like C2-type.|Extracellular (Potential).				B cell differentiation|B cell proliferation|B cell receptor signaling pathway	B cell receptor complex|external side of plasma membrane|integral to membrane|membrane raft|multivesicular body	transmembrane receptor activity			ovary(2)|pancreas(1)	3						GAAGACGCCCACTTCCAATGC	0.637000			O|S		DLBCL								12	32					0	0	1	0	0
CYTH2	9266	broad.mit.edu	37	19	48981728	48981728	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:48981728G>A	uc002pjj.3	+	12	1294	c.994G>A	c.(994-996)GGG>AGG	p.G332R	CYTH2_uc002pji.2_RNA	NM_017457	NP_059431	Q99418	CYH2_HUMAN	cytohesin 2 isoform 1	332	PH.				actin cytoskeleton organization|endocytosis|regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|membrane fraction|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						CAACAACAAGGGGCAGCTCAT	0.612000													22	72					0	0	1	0	0
POLD1	5424	broad.mit.edu	37	19	50912809	50912809	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:50912809C>T	uc002psb.3	+	17	2096	c.2040C>T	c.(2038-2040)CCC>CCT	p.P680P	POLD1_uc002psc.3_Silent_p.P680P|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.P706P	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	680					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		AGACAGACCCCCTCCGGCGCC	0.667000								DNA_polymerases_(catalytic_subunits)					36	68					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249733	52249733	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:52249733C>T	uc002pxq.2	-	2	610	c.515G>A	c.(514-516)GGG>GAG	p.G172E		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	172	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity	p.G172G(1)		ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GGCTACTGTCCCCGTTTTACC	0.527000													22	47					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325501	57325501	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:57325501C>T	uc002qnu.2	-	7	4660	c.4309G>A	c.(4309-4311)GGA>AGA	p.G1437R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G1408R|PEG3_uc002qnv.2_Missense_Mutation_p.G1437R|PEG3_uc002qnw.2_Missense_Mutation_p.G1313R|PEG3_uc002qnx.2_Missense_Mutation_p.G1311R|PEG3_uc010etr.2_Missense_Mutation_p.G1437R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1437	Glu-rich.|4 X 5 AA repeat of P-X-G-E-A.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTTGGCTGTCCAGCCTCTCCA	0.587000													17	51					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565318	58565318	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr19:58565318C>T	uc002qrc.1	+	6	1373	c.1126C>T	c.(1126-1128)CCC>TCC	p.P376S		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	376					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCCTCGCAGCCCCAAAAGACC	0.677000													7	14					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11332367	11332367	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:11332367G>A	uc002rbd.1	-	32	4519	c.4070C>T	c.(4069-4071)CCT>CTT	p.P1357L		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	1357					axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		TCGGGCAAAAGGGTCTGGAGC	0.438000													41	115					0	0	1	0	0
AGBL5	60509	broad.mit.edu	37	2	27276415	27276415	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:27276415C>T	uc002rie.2	+	3	578	c.361C>T	c.(361-363)CGC>TGC	p.R121C	AGBL5_uc002ric.2_Missense_Mutation_p.R121C|AGBL5_uc002rid.2_Missense_Mutation_p.R121C|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	121					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACGCTGGGAACGCATTCGAGA	0.502000													18	59					0	0	1	0	0
REG3A	5068	broad.mit.edu	37	2	79385887	79385887	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:79385887G>A	uc002sod.1	-	2	340	c.85C>T	c.(85-87)CCC>TCC	p.P29S	REG3A_uc002soe.1_Missense_Mutation_p.P29S|REG3A_uc002sof.1_Missense_Mutation_p.P29S	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	29					acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						TCCCTCTGGGGTTCTTCACCT	0.557000													5	21					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80808870	80808870	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:80808870G>A	uc010ysh.1	+	13	1938	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K	CTNNA2_uc010yse.1_Missense_Mutation_p.E645K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E645K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E645K|CTNNA2_uc010ysi.1_Missense_Mutation_p.E277K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	645					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CTTTGAGCAGGAAGATTATGA	0.458000													15	19					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95481683	95481683	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:95481683G>A	uc010fhq.1	-	2	697	c.305C>T	c.(304-306)GCC>GTC	p.A102V	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TCTGAGTATGGCAATATCTGC	0.294000													58	108					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95943173	95943173	+	Silent	SNP	C	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:95943173C>A	uc002suh.1	+	7	967	c.834C>A	c.(832-834)GCC>GCA	p.A278A	PROM2_uc002sui.2_Silent_p.A278A|PROM2_uc002suj.2_5'UTR|PROM2_uc002suk.2_Silent_p.A278A|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	278	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						AGCTGCAGGCCGGGCAGCAGG	0.642000													3	22					0.150653	0.150653	1	1	0
IL1B	3553	broad.mit.edu	37	2	113593774	113593774	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:113593774C>T	uc002tii.1	-	2	120	c.33G>A	c.(31-33)ATG>ATA	p.M11I	IL1B_uc002tih.1_5'Flank	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	11					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	AATAAGCCATCATTTCACTGG	0.473000													16	46					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136545942	136545942	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:136545942C>T	uc002tuu.1	-	17	5747	c.5736G>A	c.(5734-5736)GGG>GGA	p.G1912G		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1912	Cytoplasmic (Potential).				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GTTGTGTTTTCCCTTGCTTAG	0.448000													57	138					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566133	136566133	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:136566133C>T	uc002tuu.1	-	8	3795	c.3784G>A	c.(3784-3786)GAA>AAA	p.E1262K		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1262	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCATACTCTTCCTTGATCCAG	0.542000													36	82					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141459298	141459298	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:141459298C>T	uc002tvj.1	-	40	7391	c.6419G>A	c.(6418-6420)AGA>AAA	p.R2140K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2140	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCTTTCTCTCTTACTCGGTT	0.358000										TSP Lung(27;0.18)			6	37					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149226614	149226614	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:149226614C>T	uc002twm.3	+	9	2090	c.1102C>T	c.(1102-1104)CCA>TCA	p.P368S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P368S|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	368	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TCCTAGTAAACCAGTGAATCA	0.448000													44	106					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167133616	167133616	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:167133616G>A	uc010fpl.2	-	16	3059	c.2718C>T	c.(2716-2718)TTC>TTT	p.F906F	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	917	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ACACAATCAGGAAGGAGTGGA	0.493000													55	120					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179439595	179439596	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:179439595_179439596CC>TT	uc010zfg.1	-	275	63783_63784	c.63559_63560GG>AA	c.(63559-63561)GGT>AAT	p.G21187N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G14882N|TTN_uc010zfi.1_Missense_Mutation_p.G14815N|TTN_uc010zfj.1_Missense_Mutation_p.G14690N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22114							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTACACCACCATCGTTCTCA	0.450000													14	20					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179592993	179592993	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:179592993C>T	uc010zfg.1	-	64	16050	c.15826G>A	c.(15826-15828)GAA>AAA	p.E5276K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1937K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6203							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGATATTTCTTTTCCATCC	0.378000													12	27					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179629430	179629430	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:179629430G>A	uc010zfg.1	-	42	10036	c.9812C>T	c.(9811-9813)TCC>TTC	p.S3271F	TTN_uc010zfh.1_Missense_Mutation_p.S3225F|TTN_uc010zfi.1_Missense_Mutation_p.S3225F|TTN_uc010zfj.1_Missense_Mutation_p.S3225F|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Missense_Mutation_p.S3271F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3271							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGTACCAGGAAATTTTGGG	0.527000													19	61					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801846	185801846	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:185801846G>A	uc002uph.2	+	4	2317	c.1723G>A	c.(1723-1725)GAA>AAA	p.E575K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	575						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CACTCTAGATGAAAAATACAA	0.299000													16	33					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802576	185802576	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:185802576G>A	uc002uph.2	+	4	3047	c.2453G>A	c.(2452-2454)AGA>AAA	p.R818K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	818						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAAAGAGGCAGATTCCACCCC	0.388000													12	35					0	0	1	0	0
TMEFF2	23671	broad.mit.edu	37	2	193056684	193056684	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:193056684G>A	uc002utc.2	-	2	598	c.204C>T	c.(202-204)CTC>CTT	p.L68L	TMEFF2_uc002utd.1_Silent_p.L68L	NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	68	Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			TGGTGTCACAGAGGAAGAGAT	0.353000													9	25					0	0	1	0	0
SPAG16	79582	broad.mit.edu	37	2	214794733	214794733	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:214794733G>A	uc002veq.2	+	12	1356	c.1264G>A	c.(1264-1266)GAT>AAT	p.D422N	SPAG16_uc010fuz.1_Missense_Mutation_p.D273N|SPAG16_uc002ver.2_Missense_Mutation_p.D368N|SPAG16_uc010zjk.1_Missense_Mutation_p.D328N	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	422	WD 2.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TAAATTATGGGATCTATGTAA	0.418000													20	83					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215891607	215891607	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:215891607G>A	uc002vew.2	-	10	1337	c.1117C>T	c.(1117-1119)CCT>TCT	p.P373S	ABCA12_uc002vev.2_Missense_Mutation_p.P55S|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	373					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GGAATATAAGGACTATTTGCT	0.358000													33	109					0	0	1	0	0
CRYBA2	1412	broad.mit.edu	37	2	219857884	219857884	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:219857884G>A	uc002vjj.1	-	2	50	c.15C>T	c.(13-15)CCC>CCT	p.P5P	CRYBA2_uc002vjk.1_Silent_p.P5P	NM_057094	NP_476435	P53672	CRBA2_HUMAN	crystallin, beta A2	5	N-terminal arm.						structural constituent of eye lens				0		Renal(207;0.0474)		Epithelial(149;9.77e-07)|all cancers(144;0.000167)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ggcccggcgcgggggcgcTGC	0.562000													4	10					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227896870	227896870	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:227896870G>A	uc010zlt.1	-	39	4354	c.3700C>T	c.(3700-3702)CCC>TCC	p.P1234S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1234	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTACCTGGGGGTCCTGGGGGA	0.507000													22	55					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227906897	227906897	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:227906897C>T	uc010zlt.1	-	37	4126	c.3472G>A	c.(3472-3474)GAT>AAT	p.D1158N		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1158	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ATCCCTGGATCCCCCTGGAGG	0.542000													21	61					0	0	1	0	0
DGKD	8527	broad.mit.edu	37	2	234366951	234366951	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:234366951G>A	uc002vui.1	+	22	2614	c.2602G>A	c.(2602-2604)GAT>AAT	p.D868N	DGKD_uc002vuj.1_Missense_Mutation_p.D824N|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	868					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	TCCATCATTCGATGACAAGAT	0.597000													8	17					0	0	1	0	0
UGT1A9	54600	broad.mit.edu	37	2	234580650	234580650	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:234580650G>A	uc002vus.2	+	1	107	c.70G>A	c.(70-72)GAG>AAG	p.E24K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.E24K	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	24					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	TGGCTTTGCCGAGGCAGGGAA	0.582000													18	42					0	0	1	0	0
NDUFA10	4705	broad.mit.edu	37	2	240960815	240960815	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr2:240960815G>A	uc002vyn.2	-	3	339	c.259C>T	c.(259-261)CCT>TCT	p.P87S	NDUFA10_uc010fzc.1_Missense_Mutation_p.P87S|NDUFA10_uc002vyo.1_Missense_Mutation_p.P87S|NDUFA10_uc002vyp.2_Missense_Mutation_p.P87S	NM_004544	NP_004535	O95299	NDUAA_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	87					mitochondrial electron transport, NADH to ubiquinone|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transport	mitochondrial matrix|mitochondrial respiratory chain complex I	ATP binding|NADH dehydrogenase (ubiquinone) activity|phosphotransferase activity, alcohol group as acceptor			central_nervous_system(1)	1		all_epithelial(40;4.26e-15)|Breast(86;4.4e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(121;7.82e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.5e-13)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.39e-05)|Lung(119;0.00519)|LUSC - Lung squamous cell carcinoma(224;0.0202)	NADH(DB00157)	CCCGCTTCAGGAAAGTGCTTG	0.507000											OREG0015348	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	28					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561218	9561218	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr20:9561218C>T	uc002wnl.2	-	5	1109	c.564G>A	c.(562-564)TTG>TTA	p.L188L	PAK7_uc002wnk.2_Silent_p.L188L|PAK7_uc002wnj.2_Silent_p.L188L|PAK7_uc010gby.1_Silent_p.L188L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	188	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AATCGGATTTCAAAGGCTTCA	0.463000													32	106					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353000													5	78					0	0	1	0	0
REM1	28954	broad.mit.edu	37	20	30064320	30064320	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr20:30064320C>T	uc002wwa.2	+	2	356	c.72C>T	c.(70-72)TCC>TCT	p.S24S		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	24					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TGCCCCTGTCCCCACGGGGCC	0.647000													23	71					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40733211	40733211	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr20:40733211G>A	uc002xkg.2	-	25	3722	c.3538C>T	c.(3538-3540)CAG>TAG	p.Q1180*	PTPRT_uc010ggj.2_Nonsense_Mutation_p.Q1199*|PTPRT_uc010ggi.2_Nonsense_Mutation_p.Q383*	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1180	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCTCATACCTGAAATTCATCT	0.328000													33	51					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836998	43836998	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr20:43836998G>A	uc002xni.2	+	2	1117	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	SEMG1_uc002xnj.2_Missense_Mutation_p.E294K|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Intron	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	354	58 AA repeat 2.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TTCAAGTACGGAAGAAAGACG	0.408000													18	61					0	0	1	0	0
TFAP2C	7022	broad.mit.edu	37	20	55208508	55208508	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr20:55208508G>A	uc002xya.2	+	4	929	c.686G>A	c.(685-687)GGA>GAA	p.G229E	TFAP2C_uc010zzi.1_Missense_Mutation_p.G60E	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	229					cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			TCAGTCCCTGGAAGATTGTCG	0.532000													14	58					0	0	1	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42845326	42845326	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr21:42845326G>A	uc002yzj.2	-	9	959	c.825C>T	c.(823-825)GTC>GTT	p.V275V	TMPRSS2_uc010gor.2_Silent_p.V312V|TMPRSS2_uc010gos.1_Silent_p.V275V	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	275	Peptidase S1.|Extracellular (Potential).				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				GGACGTTCTGGACGTGCAGGC	0.692000			T	ERG|ETV1|ETV4|ETV5	prostate 								3	5					0	0	1	0	0
IQSEC1	9922	broad.mit.edu	37	3	12983362	12983362	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:12983362G>A	uc003bxt.2	-	2	78	c.69C>T	c.(67-69)GTC>GTT	p.V23V	IQSEC1_uc003bxu.3_5'UTR|IQSEC1_uc011auw.1_Silent_p.V9V	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	23					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CCTCGCCCTCGACGCTGCAGA	0.667000													3	5					0	0	1	0	0
WNT7A	7476	broad.mit.edu	37	3	13860502	13860502	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:13860502C>T	uc003bye.1	-	4	1294	c.989G>A	c.(988-990)TGG>TAG	p.W330*		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	330					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						ATAGCAGCACCAGTGGAACTT	0.612000													11	19					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30880536	30880536	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:30880536C>T	uc003cep.2	-	9	903	c.856G>A	c.(856-858)GAA>AAA	p.E286K	GADL1_uc003ceq.1_Missense_Mutation_p.E286K	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	286					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TCTGCTATTTCATCCAGAGGG	0.448000													14	39					0	0	1	0	0
MLH1	4292	broad.mit.edu	37	3	37035069	37035069	+	Silent	SNP	C	T	T	rs63749816		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:37035069C>T	uc003cgl.2	+	1	91	c.31C>T	c.(31-33)CTG>TTG	p.L11L	MLH1_uc011aye.1_5'Flank|EPM2AIP1_uc003cgk.2_5'Flank|MLH1_uc011ayb.1_5'UTR|MLH1_uc010hge.2_Silent_p.L11L|MLH1_uc003cgn.3_5'Flank|MLH1_uc011ayc.1_5'Flank|MLH1_uc011ayd.1_5'Flank|MLH1_uc003cgo.2_5'Flank	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	11					mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding			large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						TATTCGGCGGCTGGACGAGAC	0.557000		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				19	43					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817382	45817383	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:45817382_45817383CC>TT	uc011bai.1	-	4	576_577	c.452_453GG>AA	c.(451-453)AGG>AAA	p.R151K	SLC6A20_uc011baj.1_Missense_Mutation_p.R151K	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	151	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TGAGGGTTTTCCTGTACCAGAA	0.609000													14	71					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48699301	48699302	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:48699301_48699302GG>AA	uc003cul.2	-	1	1047_1048	c.766_767CC>TT	c.(766-768)CCT>TTT	p.P256F	CELSR3_uc003cuf.1_Missense_Mutation_p.P326F	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	256	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACCTGATGCAGGAGCTGTCCTC	0.693000													13	32					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49161487	49161487	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:49161487G>A	uc003cwe.2	-	24	3770	c.3471C>T	c.(3469-3471)CGC>CGT	p.R1157R		NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1157	Laminin EGF-like 13.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GACCTGTGAAGCGGTGACACT	0.577000													6	21					0	0	1	0	0
MST1	4485	broad.mit.edu	37	3	49724853	49724853	+	Silent	SNP	C	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:49724853C>G	uc003cxg.2	-	4	486	c.414G>C	c.(412-414)ACG>ACC	p.T138T	MST1_uc011bcs.1_Silent_p.T138T|MST1_uc010hkx.2_Silent_p.T59T|MST1_uc011bct.1_Silent_p.T138T|MST1_uc011bcu.1_Intron|RNF123_uc003cxh.2_5'Flank	NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	124	Kringle 1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CACCCACGGTCGTGGCCATGG	0.607000													23	32					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51378772	51378772	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:51378772G>A	uc011bds.1	+	38	3894	c.3871G>A	c.(3871-3873)GAG>AAG	p.E1291K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1291	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCAGCGGAAGGAGGGACTGTG	0.542000													8	14					0	0	1	0	0
FOXP1	27086	broad.mit.edu	37	3	71247495	71247495	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:71247495C>T	uc003dol.2	-	2	361	c.38G>A	c.(37-39)GGT>GAT	p.G13D	FOXP1_uc003dom.2_Missense_Mutation_p.G13D|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.G13D|FOXP1_uc003dop.2_Missense_Mutation_p.G13D|FOXP1_uc003doq.1_Missense_Mutation_p.G13D|FOXP1_uc003dos.2_Missense_Mutation_p.G13D	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	13					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GATGGCTGAACCGTTACTTTT	0.552000			T	PAX5	ALL								48	115					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100489719	100489719	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:100489719C>T	uc003dun.2	-	29	2561	c.2476G>A	c.(2476-2478)GAG>AAG	p.E826K	ABI3BP_uc003duj.2_Missense_Mutation_p.E406K|ABI3BP_uc003duk.2_Missense_Mutation_p.E535K|ABI3BP_uc003dul.2_Missense_Mutation_p.E656K|ABI3BP_uc011bhd.1_Missense_Mutation_p.E780K|ABI3BP_uc003dum.2_Missense_Mutation_p.E237K	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	826						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GTGGCCTCCTCTTTGGGGAAC	0.557000													28	58					0	0	1	0	0
BBX	56987	broad.mit.edu	37	3	107491668	107491668	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:107491668C>T	uc010hpr.2	+	11	1427	c.1100C>T	c.(1099-1101)TCT>TTT	p.S367F	BBX_uc003dwk.3_Missense_Mutation_p.S367F|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.S388F|BBX_uc003dwm.3_Missense_Mutation_p.S367F|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	367	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			TTAAGAGATTCTAAGGAATTG	0.313000													18	50					0	0	1	0	0
SLC35A5	55032	broad.mit.edu	37	3	112289504	112289504	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:112289504C>T	uc003dze.2	+	4	592	c.347C>T	c.(346-348)TCC>TTC	p.S116F		NM_017945	NP_060415	Q9BS91	S35A5_HUMAN	solute carrier family 35, member A5	116	Helical; (Potential).					Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1						TATGTCCTGTCCTATCTTCAA	0.318000													13	38					0	0	1	0	0
ILDR1	286676	broad.mit.edu	37	3	121712277	121712277	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:121712277C>T	uc003ees.2	-	7	1425	c.1319G>A	c.(1318-1320)AGG>AAG	p.R440K	ILDR1_uc003eeq.2_Missense_Mutation_p.R408K|ILDR1_uc003eer.2_Missense_Mutation_p.R396K|ILDR1_uc010hrg.2_Missense_Mutation_p.R351K	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	440	Cytoplasmic (Potential).|Arg-rich.					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		ACAGCGGCTCCTGAAAGGAGG	0.667000													5	18					0	0	1	0	0
C3orf22	152065	broad.mit.edu	37	3	126268892	126268892	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:126268892G>A	uc003ejb.2	-	4	574	c.245C>T	c.(244-246)TCT>TTT	p.S82F		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	82											0				GBM - Glioblastoma multiforme(114;0.147)		GCAGGAGCCAGACGGTGATGT	0.612000													15	28					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129233370	129233371	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:129233370_129233371CC>TT	uc003emm.2	+	25	3332_3333	c.3126_3127CC>TT	c.(3124-3129)ATCCGC>ATTTGC	p.R1043C	IFT122_uc003eml.2_Missense_Mutation_p.R1094C|IFT122_uc003emn.2_Missense_Mutation_p.R984C|IFT122_uc003emo.2_Missense_Mutation_p.R933C|IFT122_uc003emp.2_Missense_Mutation_p.R893C|IFT122_uc010htc.2_Missense_Mutation_p.R1036C|IFT122_uc011bky.1_Missense_Mutation_p.R834C|IFT122_uc003emq.2_Missense_Mutation_p.R883C|IFT122_uc003emr.2_Missense_Mutation_p.R796C|IFT122_uc011bla.1_Missense_Mutation_p.R817C|IFT122_uc010hte.2_Missense_Mutation_p.R369C|IFT122_uc003ems.2_Missense_Mutation_p.R425C	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	1043					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						CCCTGACCATCCGCGCCAAGCC	0.609000													16	45					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130292883	130292883	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:130292883G>A	uc010htl.2	+	7	3092	c.3061G>A	c.(3061-3063)GAA>AAA	p.E1021K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1021	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GAAAATGAAGGAATTTCTGGC	0.418000													10	18					0	0	1	0	0
STAG1	10274	broad.mit.edu	37	3	136141811	136141811	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:136141811G>A	uc003era.1	-	17	2018	c.1726C>T	c.(1726-1728)CCT>TCT	p.P576S	STAG1_uc003erb.1_Missense_Mutation_p.P576S|STAG1_uc003erc.1_Missense_Mutation_p.P350S|STAG1_uc010hua.1_Missense_Mutation_p.P439S	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	576					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						AGTAACATAGGAAGTGTAATA	0.308000													8	24					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150883728	150883728	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:150883728C>T	uc003eyp.2	+	10	1491	c.1453C>T	c.(1453-1455)CAT>TAT	p.H485Y	MED12L_uc011bnz.1_Missense_Mutation_p.H345Y|MED12L_uc003eyn.2_Missense_Mutation_p.H485Y|MED12L_uc003eyo.2_Missense_Mutation_p.H485Y	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	485					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GACACTTTATCATAAGATTTT	0.343000													20	70					0	0	1	0	0
NLGN1	22871	broad.mit.edu	37	3	173998845	173998845	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:173998845C>T	uc003fio.1	+	7	2647	c.2224C>T	c.(2224-2226)CAT>TAT	p.H742Y	NLGN1_uc003fip.1_Missense_Mutation_p.H742Y	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	759	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			TGATTTGGATCATGAATGTGA	0.488000													20	38					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189590736	189590736	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:189590736C>T	uc003fry.2	+	10	1390	c.1301C>T	c.(1300-1302)ACG>ATG	p.T434M	TP63_uc003frx.2_Missense_Mutation_p.T434M|TP63_uc003frz.2_Missense_Mutation_p.T434M|TP63_uc010hzc.1_Missense_Mutation_p.T434M|TP63_uc003fsa.2_Missense_Mutation_p.T340M|TP63_uc003fsb.2_Missense_Mutation_p.T340M|TP63_uc003fsc.2_Missense_Mutation_p.T340M|TP63_uc003fsd.2_Missense_Mutation_p.T340M|TP63_uc010hzd.1_Missense_Mutation_p.T255M	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	434	Oligomerization.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACAATTGAAACGTACAGGCAA	0.463000									Hay-Wells_syndrome	HNSCC(45;0.13)			18	70					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195517978	195517978	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:195517978C>T	uc011bto.1	-	2	933	c.473G>A	c.(472-474)GGA>GAA	p.G158E	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.G40E	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	163					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ACTTTCAGTTCCTGCTGTTGA	0.463000													22	55					0	0	1	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701331	195701331	+	Missense_Mutation	SNP	G	A	A	rs78212497	by1000genomes	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr3:195701331G>A	uc011btq.1	-	8	1162	c.533C>T	c.(532-534)TCG>TTG	p.S178L	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GTCCAATAGCGAGTTTGCCCC	0.592000													6	35					0	0	1	0	0
CRIPAK	285464	broad.mit.edu	37	4	1388635	1388635	+	Silent	SNP	T	C	C	rs74518227	byFrequency	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:1388635T>C	uc003gdf.2	+	1	3296	c.336T>C	c.(334-336)TGT>TGC	p.C112C		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	112	2.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CGTGCCCATGTGGAGTGCCCG	0.672000													10	147					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3210517	3210518	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:3210517_3210518CC>TT	uc011bvq.1	+	47	6321_6322	c.6176_6177CC>TT	c.(6175-6177)TCC>TTT	p.S2059F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2057					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGGCTCTATTCCCTGCTGGACA	0.431000													23	17					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351143	40351143	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:40351143G>A	uc003gva.1	+	4	626	c.610G>A	c.(610-612)GAG>AAG	p.E204K		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	204	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	TGTGGAATGGGAGGTCCATGG	0.517000													106	85					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52861712	52861712	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:52861712C>T	uc003gzi.2	-	4	1489	c.1476G>A	c.(1474-1476)GGG>GGA	p.G492G		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	492						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CGGTGTTGTCCCCGCACTGTC	0.562000													39	47					0	0	1	0	0
CENPC1	1060	broad.mit.edu	37	4	68380275	68380275	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:68380275G>A	uc003hdd.1	-	8	1144	c.961C>T	c.(961-963)CCA>TCA	p.P321S	CENPC1_uc010ihj.1_RNA|CENPC1_uc010ihk.1_RNA|CENPC1_uc010ihm.1_Missense_Mutation_p.P321S	NM_001812	NP_001803	Q03188	CENPC_HUMAN	centromere protein C 1	321					mitotic prometaphase	condensed chromosome kinetochore|condensed nuclear chromosome, centromeric region|cytosol	DNA binding			urinary_tract(1)|lung(1)	2						GCCTTTCTTGGTATTGTAATC	0.413000													3	4					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69334599	69334599	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:69334599G>A	uc003hdz.3	+	4	325	c.261G>A	c.(259-261)GTG>GTA	p.V87V		NM_014058	NP_054777			transmembrane protease, serine 11E																		ACAAACAGGTGAAAAATGCAT	0.269000													52	40					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79371306	79371306	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:79371306G>A	uc003hlb.2	+	45	6716	c.6276G>A	c.(6274-6276)GGG>GGA	p.G2092G		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2091	CSPG 9.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCTTCCAAGGGTCTGTAGCAC	0.433000													30	17					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951009	119951009	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:119951009G>A	uc003icm.3	+	4	1275	c.1079G>A	c.(1078-1080)AGG>AAG	p.R360K	SYNPO2_uc010ina.2_Missense_Mutation_p.R360K|SYNPO2_uc010inb.2_Missense_Mutation_p.R360K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.R288K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	360						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GGGCTCAGGAGGAGTGAAAGC	0.438000													54	50					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122824207	122824207	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:122824207C>T	uc003ieg.2	-	9	2337	c.2263G>A	c.(2263-2265)GAT>AAT	p.D755N	TRPC3_uc010inr.2_Missense_Mutation_p.D627N|TRPC3_uc003ief.2_Missense_Mutation_p.D682N|TRPC3_uc011cgl.1_Missense_Mutation_p.D419N	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	670	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CATTCTACATCACTGTCATCC	0.313000													32	19					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122835992	122835992	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:122835992G>A	uc003ieg.2	-	4	1358	c.1284C>T	c.(1282-1284)GTC>GTT	p.V428V	TRPC3_uc010inr.2_Intron|TRPC3_uc003ief.2_Silent_p.V355V|TRPC3_uc011cgl.1_Silent_p.V92V	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	343	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CCAGGGCCACGACCAGCACAA	0.537000													28	13					0	0	1	0	0
IRF2	3660	broad.mit.edu	37	4	185340707	185340707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr4:185340707G>A	uc003iwf.3	-	3	303	c.103C>T	c.(103-105)CAG>TAG	p.Q35*		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	35	IRF tryptophan pentad repeat.				blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		CAGGGGATCTGAAAAATCTTC	0.423000													28	19					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830149	13830149	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:13830149G>A	uc003jfd.2	-	37	6277	c.6235C>T	c.(6235-6237)CTT>TTT	p.L2079F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2079	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTAAGAAAAGCCCAAATTCA	0.373000									Kartagener_syndrome				12	35					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45645616	45645616	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:45645616G>A	uc003jok.2	-	2	545	c.520C>T	c.(520-522)CCA>TCA	p.P174S		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	174	Helical; Name=Segment S2; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						ATAATCCATGGTGTTGTTGTT	0.353000													16	51					0	0	1	0	0
SKIV2L2	23517	broad.mit.edu	37	5	54642858	54642858	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:54642858A>G	uc003jpy.3	+	11	1392	c.1126A>G	c.(1126-1128)AAA>GAA	p.K376E	SKIV2L2_uc011cqi.1_Missense_Mutation_p.K275E	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	376					maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				AAATGTTTTCAAAATTGTGAA	0.204000													13	25					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214425	140214425	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:140214425C>T	uc003lhq.2	+	1	457	c.457C>T	c.(457-459)CCA>TCA	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.P153S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCGGTTTCCACTAGAGGG	0.557000													22	40					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516745	140516745	+	Missense_Mutation	SNP	C	T	T	rs61747444		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:140516745C>T	uc003liq.2	+	1	1946	c.1729C>T	c.(1729-1731)CGG>TGG	p.R577W		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	577	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGGTGCCCCGGGCGGCCGA	0.701000													14	32					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153085289	153085289	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:153085289C>T	uc003lva.3	+	11	1850	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	GRIA1_uc003luy.3_Silent_p.I495I|GRIA1_uc003luz.3_Silent_p.I400I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.I415I|GRIA1_uc011dcx.1_Silent_p.I426I|GRIA1_uc011dcy.1_Silent_p.I505I|GRIA1_uc011dcz.1_Silent_p.I505I|GRIA1_uc010jia.1_Silent_p.I475I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	495	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CCTTAACTATCACTTTGGTCC	0.383000													13	27					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482347	156482347	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:156482347C>T	uc010jij.1	-	3	429	c.244G>A	c.(244-246)GAC>AAC	p.D82N	HAVCR1_uc011ddl.1_5'Flank|HAVCR1_uc003lwi.2_Missense_Mutation_p.D82N|HAVCR1_uc011ddm.1_Missense_Mutation_p.D82N	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	82	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTTGAAAGGTCCCCCAATAGC	0.473000													17	34					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156593105	156593105	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:156593105C>T	uc003lwn.2	-	1	175	c.75G>A	c.(73-75)ATG>ATA	p.M25I		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	25						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCAGGTCCCCCATGGAGGTTT	0.408000													30	83					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	175998270	175998270	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:175998270C>T	uc003mem.1	+	6	438	c.372C>T	c.(370-372)TTC>TTT	p.F124F	CDHR2_uc003men.1_Silent_p.F124F	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	124	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CACCCGTTTTCCAGAACACCG	0.522000													10	16					0	0	1	0	0
ZNF354A	6940	broad.mit.edu	37	5	178139426	178139426	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:178139426G>A	uc003mjj.2	-	5	1651	c.1453C>T	c.(1453-1455)CAG>TAG	p.Q485*		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	485	C2H2-type 9.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		TGCATTCTCTGATGTTGAATG	0.378000													29	85					0	0	1	0	0
GFPT2	9945	broad.mit.edu	37	5	179745858	179745858	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr5:179745858G>A	uc003mlw.1	-	10	991	c.893C>T	c.(892-894)TCG>TTG	p.S298L		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	298					dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	ATCACTGGCCGAGCGCTTGAC	0.577000													12	20					0	0	1	0	0
EHMT2	10919	broad.mit.edu	37	6	31852325	31852325	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:31852325G>A	uc003nxz.1	-	21	2625	c.2615C>T	c.(2614-2616)TCA>TTA	p.S872L	EHMT2_uc003nxv.1_5'UTR|EHMT2_uc003nxw.1_5'UTR|EHMT2_uc003nxx.1_Missense_Mutation_p.S70L|EHMT2_uc003nxy.1_Missense_Mutation_p.S670L|EHMT2_uc011don.1_Missense_Mutation_p.S895L|EHMT2_uc003nya.1_Missense_Mutation_p.S838L	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	872	ANK 7.				DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						GGCCCCACGTGACAGGAATAA	0.627000													35	68					0	0	1	0	0
TJAP1	93643	broad.mit.edu	37	6	43473343	43473343	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:43473343C>T	uc003ovd.2	+	11	1800	c.1424C>T	c.(1423-1425)CCT>CTT	p.P475L	TJAP1_uc003ovf.2_Missense_Mutation_p.P465L|TJAP1_uc003ove.2_Missense_Mutation_p.P465L|TJAP1_uc003ovc.2_Missense_Mutation_p.P465L|TJAP1_uc010jyp.2_Missense_Mutation_p.P434L|TJAP1_uc011dvh.1_Missense_Mutation_p.P465L|TJAP1_uc003ovg.2_Missense_Mutation_p.P341L|TJAP1_uc011dvi.1_Missense_Mutation_p.P475L|TJAP1_uc011dvj.1_Missense_Mutation_p.P275L|TJAP1_uc003ovi.2_Missense_Mutation_p.P341L	NM_001146016	NP_001139488	Q5JTD0	TJAP1_HUMAN	tight junction associated protein 1 isoform a	475						Golgi apparatus|tight junction	protein binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0122)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CCCACAGAACCTGACTCTGGC	0.587000													30	66					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47682860	47682860	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:47682860G>A	uc003oza.1	+	6	2137	c.1879G>A	c.(1879-1881)GAA>AAA	p.E627K	GPR115_uc003oyz.1_Missense_Mutation_p.E684K|GPR115_uc003ozb.1_Missense_Mutation_p.E625K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	627	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CACTCTCATAGAAGGCACTTC	0.458000													31	61					0	0	1	0	0
TRAM2	9697	broad.mit.edu	37	6	52373036	52373036	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:52373036C>T	uc003paq.2	-	6	700	c.551G>A	c.(550-552)CGG>CAG	p.R184Q	EFHC1_uc011dwv.1_Intron|TRAM2_uc003par.1_5'Flank	NM_012288	NP_036420	Q15035	TRAM2_HUMAN	translocation-associated membrane protein 2	184	TLC.				collagen biosynthetic process|protein transport|transmembrane transport	integral to membrane	protein binding				0	Lung NSC(77;0.109)					ACTCACCTTCCGTACCTTCTG	0.537000													3	23					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55929387	55929387	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:55929387G>A	uc003pcs.2	-	24	2393	c.2161C>T	c.(2161-2163)CCA>TCA	p.P721S	COL21A1_uc010jzz.2_Missense_Mutation_p.P106S|COL21A1_uc011dxg.1_Missense_Mutation_p.P94S|COL21A1_uc011dxh.1_Missense_Mutation_p.P106S|COL21A1_uc003pcr.2_Silent_p.F78F	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	721	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGTTGCCCTGGAATTCCCTGT	0.323000													3	7					0	0	1	0	0
ZNF451	26036	broad.mit.edu	37	6	57012155	57012155	+	Silent	SNP	T	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:57012155T>C	uc003pdm.1	+	10	1496	c.1272T>C	c.(1270-1272)TTT>TTC	p.F424F	ZNF451_uc003pdl.2_Silent_p.F424F|ZNF451_uc003pdn.1_Silent_p.F424F|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.F424F	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	424					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AATCAAAATTTTCATCACTTA	0.358000													24	47					0	0	1	0	0
CCNC	892	broad.mit.edu	37	6	99997389	99997389	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:99997389G>A	uc003pqe.2	-	9	880	c.593C>T	c.(592-594)GCT>GTT	p.A198V	uc003pqc.2_Intron|CCNC_uc003pqd.2_Missense_Mutation_p.A113V|CCNC_uc010kcr.2_RNA|CCNC_uc010kcs.2_Missense_Mutation_p.A197V|CCNC_uc011eah.1_Missense_Mutation_p.A113V	NM_005190	NP_005181	P24863	CCNC_HUMAN	cyclin C isoform a	198					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	DNA-directed RNA polymerase II, holoenzyme	protein kinase binding				0		all_cancers(76;8.46e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.064)		CATACCTAAAGCTATCATGAA	0.318000													7	17					0	0	1	0	0
PRDM1	639	broad.mit.edu	37	6	106553562	106553562	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:106553562C>T	uc003prd.2	+	5	1761	c.1527C>T	c.(1525-1527)GCC>GCT	p.A509A	PRDM1_uc003pre.2_Silent_p.A375A	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	509					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		AGGACAAGGCCTGTAGCCCCA	0.672000			D|N|Mis|F|S		DLBCL								11	18					0	0	1	0	0
AKD1	221264	broad.mit.edu	37	6	109867206	109867206	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:109867206A>C	uc003ptn.2	-	26	3166	c.3089T>G	c.(3088-3090)CTA>CGA	p.L1030R	AKD1_uc011eat.1_Missense_Mutation_p.L109R	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1030					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TTTGAGTAGTAGTTTTTCTTG	0.418000													20	56					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599661	136599661	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:136599661C>G	uc003qgx.1	-	4	611	c.358G>C	c.(358-360)GTT>CTT	p.V120L	BCLAF1_uc003qgw.1_Missense_Mutation_p.V120L|BCLAF1_uc003qgy.1_Missense_Mutation_p.V118L|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.V118L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	120					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TGAGAAGAAACGGATCTTCTT	0.453000													24	164					0	0	1	0	0
MAD1L1	8379	broad.mit.edu	37	7	2255796	2255796	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:2255796G>A	uc003slh.1	-	8	1071	c.805C>T	c.(805-807)CTG>TTG	p.L269L	MAD1L1_uc003sle.1_5'Flank|MAD1L1_uc003slf.1_Silent_p.L269L|MAD1L1_uc003slg.1_Silent_p.L269L|MAD1L1_uc010ksh.1_Silent_p.L269L|MAD1L1_uc003sli.1_Silent_p.L177L|MAD1L1_uc010ksi.1_Silent_p.L222L|MAD1L1_uc010ksj.2_Silent_p.L269L	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	269	Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		CCTCACCGCAGGTGCGCGCTC	0.642000													53	45					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20691167	20691167	+	Missense_Mutation	SNP	G	A	A	rs151326874	byFrequency	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:20691167G>A	uc003suw.3	+	4	668	c.122G>A	c.(121-123)CGA>CAA	p.R41Q	ABCB5_uc010kuh.2_Missense_Mutation_p.R486Q|ABCB5_uc003suv.3_Missense_Mutation_p.R41Q|ABCB5_uc011jyi.1_Missense_Mutation_p.R41Q	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	41	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						AAGTATGGACGAGATGATGTG	0.438000													89	89					0	0	1	0	0
C7orf65	401335	broad.mit.edu	37	7	47698748	47698748	+	Nonsense_Mutation	SNP	G	A	A	rs35314142		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:47698748G>A	uc010kyp.1	+	3	413	c.378G>A	c.(376-378)TGG>TGA	p.W126*		NM_001123065	NP_001116537	Q6ZTY9	CG065_HUMAN	hypothetical protein LOC401335	126											0						CTGACCCCTGGAAGGATGCTC	0.547000													17	88					0	0	1	0	0
GTPBP10	85865	broad.mit.edu	37	7	89982131	89982131	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:89982131A>G	uc003ukm.1	+	2	101	c.35A>G	c.(34-36)TAT>TGT	p.Y12C	GTPBP10_uc003uki.1_Missense_Mutation_p.Y29C|GTPBP10_uc003ukj.1_Missense_Mutation_p.Y3C|GTPBP10_uc003ukk.1_RNA|GTPBP10_uc003ukl.1_RNA|GTPBP10_uc003ukn.1_Missense_Mutation_p.Y12C|GTPBP10_uc003uko.1_5'UTR	NM_033107	NP_149098	A4D1E9	GTPBA_HUMAN	GTP-binding protein 10 isoform 2	12					ribosome biogenesis	chromosome|nucleolus	GTP binding|GTPase activity|magnesium ion binding				0						TTTTTTAAGTATGGAAATTTC	0.368000											OREG0003797	type=REGULATORY REGION|Gene=BC021573|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	27	12					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	100553020	100553020	+	RNA	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:100553020C>T	uc003uxk.1	+	2		c.2165C>T			uc003uxl.1_Silent_p.T455T					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		GCCCCAGCACCTTCTATGGTT	0.567000													12	60					0	0	1	0	0
SLC26A4	5172	broad.mit.edu	37	7	107329560	107329560	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:107329560C>T	uc003vep.2	+	9	1288	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F	SLC26A4_uc011kmb.1_5'Flank|SLC26A4_uc011kmc.1_5'Flank	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	355	Helical; (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						GCATCATTTTCCATCGCTGTG	0.448000									Pendred_syndrome				103	82					0	0	1	0	0
CHRM2	1129	broad.mit.edu	37	7	136700446	136700446	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:136700446G>A	uc003vtf.1	+	4	1457	c.834G>A	c.(832-834)GAG>GAA	p.E278E	CHRM2_uc003vtg.1_Silent_p.E278E|CHRM2_uc003vtj.1_Silent_p.E278E|CHRM2_uc003vtk.1_Silent_p.E278E|CHRM2_uc003vtl.1_Silent_p.E278E|CHRM2_uc003vtm.1_Silent_p.E278E|CHRM2_uc003vti.1_Silent_p.E278E|CHRM2_uc003vto.1_Silent_p.E278E|CHRM2_uc003vtn.1_Silent_p.E278E|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	278	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TTCAGGGAGAGGAGAAGGAGA	0.488000													11	76					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				51	55					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829450	146829450	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:146829450C>T	uc003weu.1	+	8	1713	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	399	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAGTCAGTTTCCAGTTTAGGA	0.493000										HNSCC(39;0.1)			42	41					0	0	1	0	0
ZNF786	136051	broad.mit.edu	37	7	148767528	148767528	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr7:148767528G>A	uc003wfh.2	-	4	2473	c.2336C>T	c.(2335-2337)GCC>GTC	p.A779V	ZNF786_uc011kuk.1_Missense_Mutation_p.A742V|ZNF786_uc003wfi.2_Missense_Mutation_p.A693V	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	779					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACTCCAATCGGCCTCTATCAT	0.507000													70	303					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2050499	2050499	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:2050499C>T	uc003wpx.3	+	21	2800	c.2662C>T	c.(2662-2664)CGG>TGG	p.R888W	MYOM2_uc011kwi.1_Missense_Mutation_p.R313W	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	888	Fibronectin type-III 5.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CTTCAGGGTCCGGGCAGTCAA	0.502000													15	21					0	0	1	0	0
DUSP4	1846	broad.mit.edu	37	8	29194636	29194636	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:29194636G>A	uc003xhm.2	-	4	1482	c.1092C>T	c.(1090-1092)TTC>TTT	p.F364F	DUSP4_uc003xhl.2_Silent_p.F273F	NM_001394	NP_001385	Q13115	DUS4_HUMAN	dual specificity phosphatase 4 isoform 1	364	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/threonine phosphatase activity			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.094)|Kidney(114;0.113)		AGCTGAAGACGAACTGCGAGG	0.701000													10	13					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35579907	35579907	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:35579907C>T	uc003xjr.1	+	9	1625	c.1297C>T	c.(1297-1299)CGT>TGT	p.R433C	UNC5D_uc003xjs.1_Missense_Mutation_p.R428C|UNC5D_uc003xju.1_5'Flank|UNC5D_uc003xjt.1_Missense_Mutation_p.R191C	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	433	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CAAAACAGTCCGTCAAGGTCA	0.547000													59	64					0	0	1	0	0
ASPH	444	broad.mit.edu	37	8	62479785	62479785	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:62479785G>A	uc003xuj.2	-	17	1511	c.1242C>T	c.(1240-1242)GTC>GTT	p.V414V	ASPH_uc011leg.1_Silent_p.V385V|ASPH_uc003xuo.2_Silent_p.V395V	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	414	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	GGTCTGCAGGGACATCAGGTA	0.483000													23	55					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69005918	69005918	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:69005918G>A	uc003xxv.1	+	21	2356	c.2329G>A	c.(2329-2331)GGA>AGA	p.G777R	PREX2_uc003xxu.1_Missense_Mutation_p.G777R|PREX2_uc011lez.1_Missense_Mutation_p.G712R	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	777					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAAGCCCCCTGGAGATGAAGC	0.413000													43	79					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87660079	87660079	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:87660079A>G	uc003ydx.2	-	8	986	c.940T>C	c.(940-942)TAC>CAC	p.Y314H	CNGB3_uc010maj.2_Missense_Mutation_p.Y176H	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	314	Helical; Name=H3; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AAGAAGAGGTAGCAAATATCA	0.313000													46	55					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124340651	124340651	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr8:124340651C>T	uc003yqh.3	-	25	3755	c.3647G>A	c.(3646-3648)GGA>GAA	p.G1216E	ATAD2_uc011lii.1_Missense_Mutation_p.G1007E|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1216					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TCCTGTGTTTCCGGTCTCATT	0.373000													25	90					0	0	1	0	0
RUSC2	9853	broad.mit.edu	37	9	35555305	35555305	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:35555305C>T	uc003zww.2	+	3	2518	c.2263C>T	c.(2263-2265)CCC>TCC	p.P755S	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.P755S	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	755						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			GGCATCCACTCCCCGAGCCAC	0.672000													22	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	69067929	69067929	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:69067929G>A	uc004afe.1	+	3		c.744_splice	c.e3+1		uc010mnq.1_Splice_Site					Homo sapiens cDNA, FLJ18209.																		TGATATGTTGGTGAGTCAGTT	0.209000													4	21					0	0	1	0	0
TMEM2	23670	broad.mit.edu	37	9	74300161	74300161	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:74300161G>A	uc011lsa.1	-	24	4644	c.4104C>T	c.(4102-4104)GTC>GTT	p.V1368V	TMEM2_uc011lrz.1_Silent_p.V361V|TMEM2_uc010mos.2_Silent_p.V1305V|TMEM2_uc011lsb.1_RNA|TMEM2_uc004aik.2_Silent_p.V202V	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	1368						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		CTCTTCTGCGGACAGTGGTGG	0.453000													25	57					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322840	79322840	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:79322840C>T	uc010mpk.2	-	8	4474	c.4350G>A	c.(4348-4350)ATG>ATA	p.M1450I		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1450					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TTGTGAAATTCATCCCATCTG	0.428000													15	45					0	0	1	0	0
FLJ44082	389762	broad.mit.edu	37	9	84562902	84562902	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:84562902A>T	uc010mpt.2	+	4	2820	c.2734A>T	c.(2734-2736)ATA>TTA	p.I912L	uc004ami.1_Intron|uc004amm.1_5'Flank	NM_207416	NP_997299	P0C874	YI039_HUMAN	hypothetical protein LOC389762	912						integral to membrane					0						TATGAAGCCCATATTAAATCT	0.433000													3	8					0	0	1	0	0
RMI1	80010	broad.mit.edu	37	9	86616475	86616475	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:86616475G>A	uc004anq.3	+	3	982	c.574G>A	c.(574-576)GGT>AGT	p.G192S	RMI1_uc004anr.3_Missense_Mutation_p.G192S|RMI1_uc004anp.3_Missense_Mutation_p.G192S|RMI1_uc004ans.3_Missense_Mutation_p.G192S	NM_024945	NP_079221	Q9H9A7	RMI1_HUMAN	RMI1, RecQ mediated genome instability 1,	192					DNA replication	nucleus					0						AGTGTTAGGAGGTGAAGTAGA	0.353000													23	50					0	0	1	0	0
TBC1D2	55357	broad.mit.edu	37	9	100975447	100975447	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:100975447G>A	uc011lvb.1	-	7	1608	c.1428C>T	c.(1426-1428)CAC>CAT	p.H476H	TBC1D2_uc004ayp.2_Silent_p.H16H|TBC1D2_uc004ayq.2_Silent_p.H476H|TBC1D2_uc004ayr.2_Silent_p.H258H|TBC1D2_uc004ayo.3_Silent_p.H476H	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	476						cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		TTGTGACCTGGTGGATCTCGG	0.532000													18	32					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113243573	113243573	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:113243573C>T	uc010mtz.2	-	12	2651	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K	SVEP1_uc010mua.1_Missense_Mutation_p.E772K|SVEP1_uc004beu.2_Missense_Mutation_p.E772K	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	772	Sushi 4.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACGCCATCTTCATAAGCACAA	0.383000													4	12					0	0	1	0	0
C9orf119	375757	broad.mit.edu	37	9	131038524	131038524	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:131038524C>T	uc004bup.2	+	1	100	c.100C>T	c.(100-102)CCT>TCT	p.P34S	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.P34S	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	34					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						GGCCGGCTTTCCTTGGGTGCG	0.682000													9	23					0	0	1	0	0
CCBL1	883	broad.mit.edu	37	9	131600340	131600340	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:131600340G>A	uc004bwh.2	-	5	613	c.428C>T	c.(427-429)TCC>TTC	p.S143F	CCBL1_uc004bwf.2_Missense_Mutation_p.S177F|CCBL1_uc004bwg.2_RNA|CCBL1_uc010myn.2_Missense_Mutation_p.S143F|CCBL1_uc004bwj.2_Missense_Mutation_p.S93F|CCBL1_uc011mbl.1_Missense_Mutation_p.S237F|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Missense_Mutation_p.S143F	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	143					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	CGGCTTCAGGGACACAAACAC	0.522000													51	128					0	0	1	0	0
UCK1	83549	broad.mit.edu	37	9	134404537	134404537	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:134404537G>A	uc004cay.2	-	4	587	c.486C>T	c.(484-486)TCC>TCT	p.S162S	UCK1_uc010mzk.2_Silent_p.S153S|UCK1_uc004cba.2_Silent_p.S162S|UCK1_uc004caz.2_RNA	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a	162					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		GCCTGACGTCGGAGTCGGTGT	0.647000													8	19					0	0	1	0	0
GTF3C5	9328	broad.mit.edu	37	9	135932207	135932207	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:135932207G>A	uc004cci.3	+	10	1642	c.1305G>A	c.(1303-1305)CGG>CGA	p.R435R	GTF3C5_uc004ccj.3_Silent_p.R442R	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	435						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		GCACAGAACGGGATGGGTGGT	0.607000													23	48					0	0	1	0	0
EHMT1	79813	broad.mit.edu	37	9	140711972	140711972	+	Silent	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:140711972C>T	uc011mfc.1	+	24	3493	c.3456C>T	c.(3454-3456)GTC>GTT	p.V1152V	EHMT1_uc004coe.2_Silent_p.V57V	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1152	SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GCACCTTTGTCTGCGAGTGAG	0.612000													14	33					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140901268	140901268	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:140901268C>T	uc004cog.2	+	16	2169	c.2024C>T	c.(2023-2025)TCG>TTG	p.S675L	CACNA1B_uc011mfd.1_Missense_Mutation_p.S206L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	675	Extracellular (Potential).|II.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GGGATCGAATCGCAAGGCGGC	0.572000													10	18					0	0	1	0	0
OTUD6A	139562	broad.mit.edu	37	X	69283110	69283111	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chrX:69283110_69283111GG>AA	uc004dxu.1	+	1	770_771	c.736_737GG>AA	c.(736-738)GGG>AAG	p.G246K		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	246	OTU.									lung(1)|skin(1)	2						CTTGATCATCGGGGAGGAGTAC	0.649000													6	12					0	0	1	0	0
SRPX2	27286	broad.mit.edu	37	X	99917309	99917309	+	Silent	SNP	G	A	A			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chrX:99917309G>A	uc004egb.2	+	4	780	c.300G>A	c.(298-300)AGG>AGA	p.R100R		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	100	Sushi 1.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						TGATTGGAAGGAGGTCGGTGC	0.542000													28	25					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114082716	114082716	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chrX:114082716C>T	uc004epu.1	+	5	1228	c.500C>T	c.(499-501)TCG>TTG	p.S167L	HTR2C_uc010nqc.1_Missense_Mutation_p.S167L|HTR2C_uc004epv.1_Intron	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	167	Cytoplasmic (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	CGTTTCAATTCGCGGACTAAG	0.408000													21	23					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985027	140985027	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chrX:140985027C>T	uc011mwp.1	+	7	1483	c.1483C>T	c.(1483-1485)CCC>TCC	p.P495S	MAGEC3_uc004fbs.2_Missense_Mutation_p.P197S|MAGEC3_uc010nsj.2_Missense_Mutation_p.P197S	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	495	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGACTATTTTCCCATGATCTT	0.433000													45	31					0	0	1	0	0
SPRR3	6707	broad.mit.edu	37	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	-	-	rs72704847	byFrequency	TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr1:152975806_152975829delCCAGGCTACACCAAGGTCCCTGAA	uc001fax.3	+	3	460_483	c.310_333delCCAGGCTACACCAAGGTCCCTGAA	c.(310-333)CCAGGCTACACCAAGGTCCCTGAAdel	p.PGYTKVPE104del	SPRR3_uc001faz.3_In_Frame_Del_p.PGYTKVPE104del|SPRR3_uc001fay.2_In_Frame_Del_p.PGYTKVPE96del	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	104_111	9.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTCCCTGAGCCAGGCTACACCAAGGTCCCTGAACCAGGCAGCA	0.567													8	63	---	---	---	---					
EIF5	1983	broad.mit.edu	37	14	103804756	103804757	+	In_Frame_Ins	INS	-	CAC	CAC	rs148191276		TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr14:103804756_103804757insCAC	uc001ymq.2	+	7	1054_1055	c.532_533insCAC	c.(532-534)ACA>ACACCA	p.185_186insP	EIF5_uc001ymr.2_In_Frame_Ins_p.185_186insP|EIF5_uc001yms.2_In_Frame_Ins_p.185_186insP|EIF5_uc001ymt.2_In_Frame_Ins_p.185_186insP|EIF5_uc001ymu.2_In_Frame_Ins_p.185_186insP	NM_001969	NP_001960	P55010	IF5_HUMAN	eukaryotic translation initiation factor 5	185_186					regulation of translational initiation|RNA metabolic process	cytosol	GTP binding|GTPase activity|translation initiation factor activity			pancreas(1)|breast(1)|skin(1)	3		Melanoma(154;0.155)	Epithelial(46;0.182)			CAGCAGTGAGAcaccaccacca	0.282													6	9	---	---	---	---					
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	TGC	TGC			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr6:16327864_16327865insTGC	uc003nbt.2	-	8	1648_1649	c.677_678insGCA	c.(676-678)CAC>CAGCAC	p.225_226insQ	ATXN1_uc010jpi.2_In_Frame_Ins_p.225_226insQ|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	225_226					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CCCTGCTGAGGtgctgctgctg	0.366													4	5	---	---	---	---					
TSC1	7248	broad.mit.edu	37	9	135782758	135782760	+	Splice_Site	DEL	CTG	-	-			TCGA-FS-A1Z7-06A-11D-A197-08	TCGA-FS-A1Z7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1e9437fc-e962-4b90-845b-6ff5d042e070	b9f08a06-425d-4120-9708-498abc05c146	g.chr9:135782758_135782760delCTG	uc004cca.2	-	13	1498	c.1264_splice	c.e13-1	p.E422_splice	TSC1_uc004ccb.3_Splice_Site_p.E421_splice|TSC1_uc011mcq.1_Splice_Site_p.E371_splice|TSC1_uc011mcr.1_Intron|TSC1_uc011mcs.1_Splice_Site_p.E301_splice	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1						activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding	p.?(1)		lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		TTCTCTCTTCCTGAAAAGATAAG	0.399			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				8	51	---	---	---	---					
