Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	982226	982226	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr1:982226G>A	uc001ack.1	+	19	3327	c.3277G>A	c.(3277-3279)GTG>ATG	p.V1093M		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1093	Ser/Thr-rich.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GGGCAGCAGCGTGGCCACCCC	0.687000													4	1					0	0	1.23904e-05	0	0
PI4KB	5298	broad.mit.edu	37	1	151282708	151282708	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr1:151282708A>T	uc001ext.2	-	3	1348	c.933T>A	c.(931-933)AGT>AGA	p.S311R	PI4KB_uc001exr.2_Missense_Mutation_p.S323R|PI4KB_uc001exs.2_Intron|PI4KB_uc001exu.2_Intron|PI4KB_uc010pcw.1_Intron	NM_002651	NP_002642	Q9UBF8	PI4KB_HUMAN	catalytic phosphatidylinositol 4-kinase beta	311					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|receptor-mediated endocytosis	endosome|Golgi apparatus|mitochondrial outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum membrane	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			ovary(2)|skin(2)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AATTATCAATACTCTCGGTGC	0.403000													7	12					0	0	0.000157383	0	0
FMO1	2326	broad.mit.edu	37	1	171254418	171254418	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr1:171254418C>G	uc009wvz.2	+	9	1470	c.1334C>G	c.(1333-1335)GCA>GGA	p.A445G	FMO1_uc010pme.1_Missense_Mutation_p.A382G|FMO1_uc001ghl.2_Missense_Mutation_p.A445G|FMO1_uc001ghm.2_Missense_Mutation_p.A445G|FMO1_uc001ghn.2_3'UTR	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	445					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TATATCAATGCAAAACCCAAC	0.458000													6	99					0	0	0.000157383	0	0
TNNI1	7135	broad.mit.edu	37	1	201398341	201398341	+	RNA	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr1:201398341G>A	uc001gwo.1	-	2		c.230C>T						P19237	TNNI1_HUMAN	Homo sapiens mRNA for troponin I (TNNI1 gene), alternative termination.						muscle filament sliding|regulation of striated muscle contraction	cytosol|troponin complex	actin binding|tropomyosin binding				0						GCAAGGGGGCGACTTCGGTTG	0.493000													7	26					0	0	2.17888e-05	0	0
TAF1A	9015	broad.mit.edu	37	1	222742993	222742994	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr1:222742993_222742994CC>AA	uc009xdz.1	-	7	941_942	c.752_753GG>TT	c.(751-753)GGG>GTT	p.G251V	TAF1A_uc001hni.1_Missense_Mutation_p.G137V|TAF1A_uc001hnj.2_Missense_Mutation_p.G251V|TAF1A_uc001hnk.2_Missense_Mutation_p.G137V|TAF1A_uc010pur.1_Missense_Mutation_p.G251V	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	251					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		CATCTCGATCCCCATAGAATTC	0.332000													12	722					0	0	6.4e-05	0	0
CAPN2	824	broad.mit.edu	37	1	223959598	223959598	+	Missense_Mutation	SNP	G	T	T	rs150465838	byFrequency	TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr1:223959598G>T	uc001hob.3	+	19	2215	c.1991G>T	c.(1990-1992)CGG>CTG	p.R664L	CAPN2_uc010puy.1_Missense_Mutation_p.R586L|CAPN2_uc001hoc.2_Missense_Mutation_p.R245L	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	664	Domain IV.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		AATTTTGTTCGGTGTTTGGTT	0.443000													8	293					0.000274275	0.00938989	0.000274275	1	0
C10orf71	118461	broad.mit.edu	37	10	50530628	50530628	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr10:50530628G>A	uc010qgp.1	+	3	377	c.38G>A	c.(37-39)AGC>AAC	p.S13N		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	13											0						GACGCGTTCAGCGACTCCTCC	0.542000													7	3					0	0	2.17888e-05	0	0
CDH23	64072	broad.mit.edu	37	10	73375261	73375261	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr10:73375261G>A	uc001jrx.3	+	10	1210	c.833G>A	c.(832-834)GGG>GAG	p.G278E	CDH23_uc001jrw.3_Missense_Mutation_p.G278E|CDH23_uc009xql.2_Missense_Mutation_p.G323E	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	278	Cadherin 3.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TCTCTTGCAGGGAATACCAAC	0.617000													9	1					0	0	3.86212e-05	0	0
NEURL	9148	broad.mit.edu	37	10	105331479	105331479	+	Silent	SNP	C	T	T	rs142246980		TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr10:105331479C>T	uc001kxh.2	+	3	959	c.549C>T	c.(547-549)AAC>AAT	p.N183N		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	183	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		ACCGCATCAACGACTCGGCTG	0.637000													24	5					0	0	0.000184323	0	0
RAB11FIP2	22841	broad.mit.edu	37	10	119768707	119768707	+	Silent	SNP	C	G	G	rs139031897		TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr10:119768707C>G	uc001ldj.1	-	5	1781	c.1341G>C	c.(1339-1341)GGG>GGC	p.G447G	RAB11FIP2_uc009xyz.1_Silent_p.G467G	NM_014904	NP_055719	Q7L804	RFIP2_HUMAN	RAB11 family interacting protein 2	447	FIP-RBD.				protein transport	plasma membrane|recycling endosome membrane	protein homodimerization activity				0		Colorectal(252;0.235)		all cancers(201;0.0238)		GACTACGATACCCTGCAGTGG	0.453000													49	14					0	0	0.000147903	0	0
NAV2	89797	broad.mit.edu	37	11	19901527	19901527	+	Silent	SNP	C	G	G	rs149842017		TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:19901527C>G	uc010rdm.1	+	5	985	c.624C>G	c.(622-624)CCC>CCG	p.P208P	NAV2_uc001mpp.2_Silent_p.P144P|NAV2_uc001mpr.3_Silent_p.P208P	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	208	Gln-rich.					nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CTCTGCCGCCCGCCGTATCCC	0.567000													2	2					0	0	6.4e-05	0	0
LUZP2	338645	broad.mit.edu	37	11	25004713	25004713	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:25004713C>A	uc001mqs.2	+	9	873	c.639C>A	c.(637-639)TGC>TGA	p.C213*	LUZP2_uc009yif.2_Nonsense_Mutation_p.C127*|LUZP2_uc009yig.2_Nonsense_Mutation_p.C171*	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	213						extracellular region				ovary(1)|skin(1)	2						TGCAGCTCTGCTTGACATCTG	0.413000													45	13					4.37618e-36	1.64319e-34	0.000147903	1	0
RAG1	5896	broad.mit.edu	37	11	36596185	36596185	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:36596185C>T	uc001mwu.3	+	2	1455	c.1331C>T	c.(1330-1332)GCG>GTG	p.A444V	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	444	NBD.		A -> V (in OS/T(-)B(-)NK(+) SCID; atypical).		histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GCTCTGAGGGCGAGGAATGAG	0.562000									Familial_Hemophagocytic_Lymphohistiocytosis				31	10					0	0	0.000339439	0	0
C11orf84	144097	broad.mit.edu	37	11	63594575	63594575	+	Silent	SNP	T	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:63594575T>C	uc001nxt.2	+	6	1346	c.1110T>C	c.(1108-1110)ACT>ACC	p.T370T	C11orf84_uc001nxu.1_RNA	NM_138471	NP_612480	Q9BUA3	CK084_HUMAN	hypothetical protein LOC144097	370											0						CCAGCACCACTGTGGCAGGGA	0.592000													3	47					0	0	0.00024832	0	0
ATG2A	23130	broad.mit.edu	37	11	64669847	64669847	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:64669847A>C	uc001obx.2	-	28	3904	c.3789T>G	c.(3787-3789)AGT>AGG	p.S1263R	ATG2A_uc001obw.2_Missense_Mutation_p.S28R	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1263							protein binding			ovary(1)|central_nervous_system(1)	2						GAGAGGCAGGACTCTCCGAGA	0.701000													3	4					0	0	0.00024832	0	0
TRPC6	7225	broad.mit.edu	37	11	101324406	101324406	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:101324406A>T	uc001pgk.3	-	12	3044	c.2619T>A	c.(2617-2619)GAT>GAA	p.D873E	TRPC6_uc009ywy.2_Missense_Mutation_p.D757E|TRPC6_uc009ywz.1_Missense_Mutation_p.D818E	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	873	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CACTCTCCTTATCTATCTGGG	0.448000													19	8					0	0	0.000229342	0	0
KCNJ5	3762	broad.mit.edu	37	11	128786315	128786315	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr11:128786315C>G	uc001qet.2	+	3	1263	c.949C>G	c.(949-951)CAA>GAA	p.Q317E	KCNJ5_uc009zck.2_Missense_Mutation_p.Q317E|KCNJ5_uc001qew.2_Missense_Mutation_p.Q317E	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	317	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CATGACCTGCCAAGCCCGGAG	0.388000													31	2					0	0	0.000339439	0	0
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458000													4	84					0	0	3.59834e-05	0	0
DDX12	440081	broad.mit.edu	37	12	9580280	9580280	+	Silent	SNP	A	G	G	rs146037854	by1000genomes	TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr12:9580280A>G	uc010sgs.1	-	14	1626	c.1431T>C	c.(1429-1431)ACT>ACC	p.T477T		NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						AGTCGTTGATAGTCTTCAGCT	0.493000													3	26					0	0	8.12818e-05	0	0
LGR5	8549	broad.mit.edu	37	12	71976316	71976317	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr12:71976316_71976317CC>AA	uc001swl.2	+	17	1681_1682	c.1633_1634CC>AA	c.(1633-1635)CCA>AAA	p.P545K	LGR5_uc001swm.2_Missense_Mutation_p.P521K|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	545	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTCACCTTCCCCAGGTGAGAAA	0.450000													9	349					0	0	6.4e-05	0	0
C12orf50	160419	broad.mit.edu	37	12	88379686	88379686	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr12:88379686G>A	uc001tam.1	-	11	1235	c.1067C>T	c.(1066-1068)ACG>ATG	p.T356M	C12orf50_uc001tan.2_Missense_Mutation_p.T371M	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	356								p.T356A(1)		skin(2)|ovary(1)	3						GGACCCATGCGTGGGCCTGCT	0.478000													65	85					0	0	0.000147903	0	0
MMP17	4326	broad.mit.edu	37	12	132329745	132329745	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr12:132329745G>C	uc001ujc.1	+	7	1150	c.1051G>C	c.(1051-1053)GGC>CGC	p.G351R	MMP17_uc001ujd.1_Missense_Mutation_p.G267R	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	351	Hemopexin-like 1.				proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		CTTCTTCAAAGGTACCTCCAG	0.652000													15	20					0	0	7.07596e-05	0	0
SUPT16H	11198	broad.mit.edu	37	14	21820927	21820927	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr14:21820927T>C	uc001wao.2	-	26	3388	c.3049A>G	c.(3049-3051)AGC>GGC	p.S1017G	SUPT16H_uc001wan.2_Missense_Mutation_p.S161G	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	1017					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		CTCTTCCGGCTCATACTTCGA	0.478000													3	139					0	0	0.00024832	0	0
EXD1	161829	broad.mit.edu	37	15	41476511	41476512	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr15:41476511_41476512TG>AT	uc001znk.2	-	10	1353_1354	c.1162_1163CA>AT	c.(1162-1164)CAA>ATA	p.Q388I	EXD1_uc001znj.2_Missense_Mutation_p.Q186I|EXD1_uc010ucv.1_Missense_Mutation_p.Q446I	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	388					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						ATTTGTAGCTTGTTTATTCAAA	0.386000													39	6					0	0	6.4e-05	0	0
NARG2	79664	broad.mit.edu	37	15	60741574	60741574	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr15:60741574G>C	uc002agp.2	-	10	1827	c.1592C>G	c.(1591-1593)ACT>AGT	p.T531S	NARG2_uc002ago.2_Missense_Mutation_p.T394S|NARG2_uc002agq.3_Missense_Mutation_p.T199S	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	531						nucleus				ovary(1)|lung(1)	2						TATATCTATAGTCATATCATT	0.333000													36	57					0	0	8.91981e-05	0	0
ZNF592	9640	broad.mit.edu	37	15	85341986	85341986	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr15:85341986C>T	uc002bld.2	+	8	3240	c.2904C>T	c.(2902-2904)GCC>GCT	p.A968A	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	968					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGCCTGAAGCCCACCGCAGGG	0.667000													8	14					0	0	0.000274275	0	0
C15orf42	90381	broad.mit.edu	37	15	90161426	90161427	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr15:90161426_90161427CC>AA	uc002boe.2	+	17	3004_3005	c.3004_3005CC>AA	c.(3004-3006)CCT>AAT	p.P1002N		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1002					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TGAAGAGTCCCCTGAAAAAGGA	0.391000													11	420					0	0	6.4e-05	0	0
GPR139	124274	broad.mit.edu	37	16	20043116	20043116	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr16:20043116T>A	uc002dgu.1	-	2	1165	c.1003A>T	c.(1003-1005)ATC>TTC	p.I335F	GPR139_uc010vaw.1_Missense_Mutation_p.I242F	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	335	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AGCATCTTGATGCAGTGTGAG	0.443000													84	16					0	0	0.000147903	0	0
KRT35	3886	broad.mit.edu	37	17	39634648	39634648	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr17:39634648C>T	uc002hws.2	-	5	1007	c.964G>A	c.(964-966)GCC>ACC	p.A322T		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	322	Rod.|Coil 2.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				ATCTCCAGGGCGTTGACCGTG	0.602000													19	25					0	0	7.07596e-05	0	0
PSME3	10197	broad.mit.edu	37	17	40986871	40986871	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr17:40986871A>G	uc002ibr.2	+	4	447	c.221A>G	c.(220-222)AAT>AGT	p.N74S	PSME3_uc002ibp.2_Missense_Mutation_p.N13S|PSME3_uc002ibq.2_Missense_Mutation_p.N74S|PSME3_uc002ibs.2_Missense_Mutation_p.N85S|PSME3_uc010whd.1_5'UTR	NM_005789	NP_005780	P61289	PSME3_HUMAN	proteasome activator subunit 3 isoform 1	74					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of proteasomal protein catabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome activator complex	endopeptidase activator activity|identical protein binding|MDM2 binding|p53 binding				0		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CTTCTCACCAATAGCCATGAT	0.448000													35	53					0	0	0.000270559	0	0
Unknown	0	broad.mit.edu	37	18	116842	116843	+	RNA	DNP	TA	CT	CT			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr18:116842_116843TA>CT	uc002kke.2	+	2		c.390_391TA>CT								Homo sapiens Rho-associated, coiled-coil containing protein kinase 1, mRNA (cDNA clone IMAGE:5269982), complete cds.																		TTCATTTTAGTAAACTGTTTCA	0.213000													17	7					0	0	6.4e-05	0	0
DCC	1630	broad.mit.edu	37	18	50918108	50918108	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr18:50918108C>A	uc002lfe.1	+	17	3126	c.2539C>A	c.(2539-2541)CCA>ACA	p.P847T	DCC_uc010xdr.1_Missense_Mutation_p.P675T|DCC_uc010dpf.1_Missense_Mutation_p.P482T	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	847	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CATGCTCCCACCAGTAGGTGT	0.522000													22	134					1.55469e-16	5.5969e-15	5.49717e-05	1	0
CBLN2	147381	broad.mit.edu	37	18	70209065	70209065	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr18:70209065G>T	uc002lku.2	-	2	566	c.331C>A	c.(331-333)CGC>AGC	p.R111S	CBLN2_uc002lkv.2_Missense_Mutation_p.R111S	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	111	C1q.					integral to membrane					0		Esophageal squamous(42;0.131)				GTCATGGTGCGGTTGCTCATC	0.711000													14	2					1.67942e-08	5.86452e-07	7.07596e-05	1	0
LONP1	9361	broad.mit.edu	37	19	5714222	5714222	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr19:5714222C>A	uc002mcx.2	-	2	523	c.490G>T	c.(490-492)GTC>TTC	p.V164F	LONP1_uc002mcy.2_Missense_Mutation_p.V100F|LONP1_uc010duh.2_5'UTR|LONP1_uc010dui.2_Missense_Mutation_p.V164F|LONP1_uc002mcz.2_5'UTR	NM_004793	NP_004784	P36776	LONM_HUMAN	mitochondrial lon peptidase 1 precursor	164	Lon.				cellular chaperone-mediated protein complex assembly|cellular response to oxidative stress|misfolded or incompletely synthesized protein catabolic process|mitochondrial DNA metabolic process|oxidation-dependent protein catabolic process|protein homooligomerization|response to hypoxia	mitochondrial nucleoid	ADP binding|ATP binding|ATP-dependent peptidase activity|DNA polymerase binding|G-quadruplex DNA binding|mitochondrial heavy strand promoter anti-sense binding|mitochondrial light strand promoter anti-sense binding|sequence-specific DNA binding|serine-type endopeptidase activity|single-stranded DNA binding|single-stranded RNA binding				0						AAGACGCCGACATAAGGCTGG	0.458000													34	70					4.65686e-17	1.69393e-15	0.000109025	1	0
RAVER1	125950	broad.mit.edu	37	19	10434111	10434111	+	Silent	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr19:10434111G>A	uc002moa.2	-	4	1019	c.939C>T	c.(937-939)TTC>TTT	p.F313F		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	296	RRM 3.					cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			CAGGGGCGCAGAAGGAGACTC	0.716000													9	23					0	0	0.000274275	0	0
CYP4F11	57834	broad.mit.edu	37	19	16045093	16045093	+	Silent	SNP	A	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr19:16045093A>G	uc002nbu.2	-	2	162	c.126T>C	c.(124-126)TAT>TAC	p.Y42Y	CYP4F11_uc010eab.1_Silent_p.Y42Y|CYP4F11_uc002nbt.2_Silent_p.Y42Y	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	42					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GGCAGTTGTCATAGAAGGTGT	0.642000													14	33					0	0	0.000422831	0	0
GGN	199720	broad.mit.edu	37	19	38877378	38877378	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr19:38877378G>A	uc002oij.1	-	3	659	c.524C>T	c.(523-525)CCA>CTA	p.P175L	GGN_uc002oik.1_Intron|GGN_uc010efy.1_Missense_Mutation_p.P92L	NM_152657	NP_689870	Q86UU5	GGN_HUMAN	gametogenetin	175	Interaction with GGNBP1 (By similarity).|Pro-rich.			PP -> SR (in Ref. 1; AAP31500).	cell differentiation|multicellular organismal development|spermatogenesis						0	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			AGGTAATGGTGGTGGCGGCTT	0.677000													8	15					0	0	3.86212e-05	0	0
PSG9	5678	broad.mit.edu	37	19	43762514	43762515	+	Missense_Mutation	DNP	CG	AT	AT	rs149955411		TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr19:43762514_43762515CG>AT	uc002owd.3	-	5	1181_1182	c.1082_1083CG>AT	c.(1081-1083)CCG>CAT	p.P361H	PSG9_uc002owe.3_Missense_Mutation_p.P268H|PSG9_uc010xwm.1_Missense_Mutation_p.P268H|PSG9_uc002owf.3_Missense_Mutation_p.P175H|PSG9_uc002owg.2_Missense_Mutation_p.P268H|PSG9_uc002owh.2_Missense_Mutation_p.P175H	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	361	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AATACTCTGCCGGTGGGTTAGA	0.455000													7	240					0	0	6.4e-05	0	0
IL4I1	259307	broad.mit.edu	37	19	50399210	50399210	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr19:50399210C>A	uc002pqt.1	-	3	192	c.114G>T	c.(112-114)CAG>CAT	p.Q38H	IL4I1_uc002pqv.1_Missense_Mutation_p.Q47H|IL4I1_uc010eno.1_Missense_Mutation_p.Q46H|IL4I1_uc002pqw.1_Missense_Mutation_p.Q46H|IL4I1_uc002pqu.1_Missense_Mutation_p.Q60H	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	38						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		AGTCAGGATCCTGCATGCATT	0.512000													32	39					5.60225e-13	1.99623e-11	0.000279167	1	0
AGBL5	60509	broad.mit.edu	37	2	27278900	27278900	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:27278900T>C	uc002rie.2	+	7	1476	c.1259T>C	c.(1258-1260)ATC>ACC	p.I420T	AGBL5_uc002ric.2_Missense_Mutation_p.I420T|AGBL5_uc002rid.2_Missense_Mutation_p.I420T|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	420					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTGATACCATCCCCCCCAAA	0.517000													4	177					0	0	1.23904e-05	0	0
SPAST	6683	broad.mit.edu	37	2	32368403	32368403	+	Splice_Site	SNP	A	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:32368403A>G	uc002roc.2	+	14	1758	c.1537_splice	c.e14-2	p.T513_splice	SPAST_uc002rod.2_Splice_Site_p.T481_splice	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1						cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					AATATTTTTCAGACAAGACTA	0.224000													12	20					0	0	0.00010058	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746165	77746165	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:77746165G>C	uc002snr.2	-	3	1245	c.830C>G	c.(829-831)CCC>CGC	p.P277R	LRRTM4_uc002snq.2_Missense_Mutation_p.P277R|LRRTM4_uc002sns.2_Missense_Mutation_p.P277R|LRRTM4_uc002snt.2_Missense_Mutation_p.P278R	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	277	Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TTGTAAATTGGGGAGGCATTT	0.398000													13	16					0	0	0.00010058	0	0
IL18RAP	8807	broad.mit.edu	37	2	103067461	103067461	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103067461G>A	uc002tbx.2	+	11	1848	c.1364G>A	c.(1363-1365)AGA>AAA	p.R455K	IL18RAP_uc010fiz.2_Missense_Mutation_p.R313K	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	455	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TTGCTTGAAAGAGATGTGGCT	0.423000													25	32					0	0	5.49717e-05	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068314	103068314	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103068314C>T	uc002tbx.2	+	12	1957	c.1473C>T	c.(1471-1473)ATC>ATT	p.I491I	IL18RAP_uc010fiz.2_Silent_p.I349I	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	491	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GACCCAGTATCTTTGAACTAC	0.383000													48	48					0	0	0.000147903	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068354	103068354	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103068354C>T	uc002tbx.2	+	12	1997	c.1513C>T	c.(1513-1515)CAA>TAA	p.Q505*	IL18RAP_uc010fiz.2_Nonsense_Mutation_p.Q363*	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	505	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CTTGGATGATCAAACACTGAA	0.408000													41	44					0	0	0.000270559	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068368	103068368	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103068368C>T	uc002tbx.2	+	12	2011	c.1527C>T	c.(1525-1527)CTC>CTT	p.L509L	IL18RAP_uc010fiz.2_Silent_p.L367L	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	509	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CACTGAAACTCATTTTAATTA	0.413000													34	44					0	0	8.91981e-05	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068392	103068392	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103068392C>T	uc002tbx.2	+	12	2035	c.1551C>T	c.(1549-1551)TTC>TTT	p.F517F	IL18RAP_uc010fiz.2_Silent_p.F375F	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	517	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TCTGTTACTTCCAAGAGCCAG	0.413000													36	51					0	0	0.000228196	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068417	103068417	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103068417C>T	uc002tbx.2	+	12	2060	c.1576C>T	c.(1576-1578)CTC>TTC	p.L526F	IL18RAP_uc010fiz.2_Missense_Mutation_p.L384F	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	526	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TCTACCTCATCTCGTGAAAAA	0.428000													49	82					0	0	0.000147903	0	0
IL18RAP	8807	broad.mit.edu	37	2	103068482	103068482	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:103068482C>T	uc002tbx.2	+	12	2125	c.1641C>T	c.(1639-1641)CCC>CCT	p.P547P	IL18RAP_uc010fiz.2_Silent_p.P405P	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	547	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CAGTTCCTCCCAATTCTAGGT	0.458000													65	113					0	0	0.000147903	0	0
LY75	4065	broad.mit.edu	37	2	160734989	160734989	+	Silent	SNP	G	A	A	rs34313381		TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:160734989G>A	uc002ubc.3	-	11	1689	c.1620C>T	c.(1618-1620)TAC>TAT	p.Y540Y	LY75_uc002ubb.3_Silent_p.Y540Y|LY75_uc010fos.2_Silent_p.Y540Y|LY75_uc010fot.1_Silent_p.Y540Y	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	540	Extracellular (Potential).|C-type lectin 3.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		AATCATTTAGGTATTCTTGCT	0.353000													25	35					0	0	9.22233e-05	0	0
CPS1	1373	broad.mit.edu	37	2	211460236	211460236	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr2:211460236C>T	uc002vee.3	+	13	1421	c.1289C>T	c.(1288-1290)TCA>TTA	p.S430L	CPS1_uc010fur.2_Missense_Mutation_p.S436L|CPS1_uc010fus.2_5'UTR	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	430					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		ATTCTAGGATCAGGAGGTCTG	0.378000													68	114					0	0	0.000147903	0	0
TGM3	7053	broad.mit.edu	37	20	2298022	2298023	+	Missense_Mutation	DNP	CG	AT	AT	rs145397721	by1000genomes	TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr20:2298022_2298023CG>AT	uc002wfx.3	+	7	971_972	c.874_875CG>AT	c.(874-876)CGG>ATG	p.R292M		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	292					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GATTCCTTCCCGGGTGATCACC	0.564000													7	186					0	0	6.4e-05	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36361338	36361338	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr20:36361338C>G	uc010zvw.1	+	2	179	c.88C>G	c.(88-90)CGG>GGG	p.R30G	CTNNBL1_uc010zvv.1_Missense_Mutation_p.R3G	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	30					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				GAAGATGCGTCGGAAACAAAC	0.478000													12	56					0	0	0.000151284	0	0
TP53TG5	27296	broad.mit.edu	37	20	44004137	44004137	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr20:44004137C>A	uc002xny.2	-	4	391	c.310G>T	c.(310-312)GGG>TGG	p.G104W	SYS1_uc002xnw.1_3'UTR|SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein	104					intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						TCGGAGCACCCGATCTCCTGG	0.502000													8	241					0.000274275	0.00938989	0.000274275	1	0
ZNF217	7764	broad.mit.edu	37	20	52192352	52192352	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr20:52192352A>T	uc002xwq.3	-	3	3222	c.2951T>A	c.(2950-2952)CTG>CAG	p.L984Q	ZNF217_uc010gij.1_Missense_Mutation_p.L976Q	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	984					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			CTGAACAGTCAGCACATTTGG	0.552000													60	20					0	0	0.000147903	0	0
GNAS	2778	broad.mit.edu	37	20	57430051	57430051	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr20:57430051C>T	uc002xzw.2	+	1	2016	c.1731C>T	c.(1729-1731)AGC>AGT	p.S577S	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			ATGACTCCAGCGGAGACGAGT	0.672000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			13	37					0	0	0.000151284	0	0
UMODL1	89766	broad.mit.edu	37	21	43508437	43508437	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr21:43508437G>A	uc002zaf.1	+	5	637	c.637G>A	c.(637-639)GTC>ATC	p.V213I	UMODL1_uc002zad.1_Missense_Mutation_p.V141I|UMODL1_uc002zae.1_Missense_Mutation_p.V141I|UMODL1_uc002zag.1_Missense_Mutation_p.V213I|UMODL1_uc010gow.1_Missense_Mutation_p.V5I|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Intron|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Missense_Mutation_p.V5I	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	213	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GGCCTCCACCGTCCACCACCT	0.552000													34	33					0	0	0.000132358	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011562	46011562	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr21:46011562G>C	uc002zfm.2	-	1	825	c.804C>G	c.(802-804)CAC>CAG	p.H268Q	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	268	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						CACAGCAGGCGTGCTGGCAGG	0.642000													4	172					0	0	1.23904e-05	0	0
POTEH	23784	broad.mit.edu	37	22	16287673	16287673	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr22:16287673C>G	uc010gqp.2	-	1	265	c.213G>C	c.(211-213)TGG>TGC	p.W71C	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	71										skin(1)	1						TCCCCCTGCACCAGGGGAAGC	0.582000													9	425					0	0	3.86212e-05	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659814	24659814	+	RNA	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr22:24659814C>G	uc002zzs.3	+	7		c.3546C>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TCTGCGCACCCGGAGGTGGGG	0.612000													2	5					0	0	6.4e-05	0	0
SLC5A4	6527	broad.mit.edu	37	22	32635079	32635079	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr22:32635079T>C	uc003ami.2	-	6	480	c.478_splice	c.e6-1	p.A160_splice		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose						carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						TATGTCTGCCTAAAAAGGGAA	0.463000													19	3					0	0	9.7654e-05	0	0
KCNH8	131096	broad.mit.edu	37	3	19554767	19554767	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr3:19554767A>T	uc003cbk.1	+	13	2580	c.2385A>T	c.(2383-2385)AAA>AAT	p.K795N	KCNH8_uc010hex.1_Missense_Mutation_p.K256N	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	795	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						AGAACTTGAAATTGCAACTTT	0.433000													42	55					0	0	0.000437636	0	0
CCDC51	79714	broad.mit.edu	37	3	48476289	48476289	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr3:48476289C>T	uc003csz.2	-	2	371	c.250G>A	c.(250-252)GAC>AAC	p.D84N	CCDC51_uc003cta.2_5'UTR|CCDC51_uc003ctb.2_5'UTR|CCDC51_uc003ctc.2_Missense_Mutation_p.D84N|CCDC51_uc003ctd.2_5'UTR	NM_024661	NP_078937	Q96ER9	CCD51_HUMAN	coiled-coil domain containing 51	84						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TCATATCTGTCCCACCAAGTC	0.637000													13	88					0	0	0.000308642	0	0
SIDT1	54847	broad.mit.edu	37	3	113302286	113302286	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr3:113302286G>A	uc003eak.2	+	7	1429	c.778G>A	c.(778-780)GTG>ATG	p.V260M	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.V260M|SIDT1_uc011big.1_Missense_Mutation_p.V13M	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	260	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						GCAGTTCTTCGTGGTATTTGT	0.453000													21	7					0	0	7.16444e-05	0	0
IGSF10	285313	broad.mit.edu	37	3	151163993	151163993	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr3:151163993A>G	uc011bod.1	-	4	3776	c.3776T>C	c.(3775-3777)GTG>GCG	p.V1259A		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1259					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AATTTGCATCACACTTGTTGA	0.438000													4	48					0	0	0.00024832	0	0
WFS1	7466	broad.mit.edu	37	4	6296913	6296913	+	Silent	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr4:6296913G>A	uc003giy.2	+	7	1024	c.858G>A	c.(856-858)CTG>CTA	p.L286L	WFS1_uc003gix.2_Silent_p.L286L|WFS1_uc003giz.2_Silent_p.L104L	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	286					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		CACTGCGTCTGAAGGTGAGTG	0.647000													83	280					0	0	0.000147903	0	0
GABRG1	2565	broad.mit.edu	37	4	46067380	46067380	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr4:46067380C>T	uc003gxb.2	-	4	694	c.542_splice	c.e4+1	p.R181_splice		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1						gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ACCAATATTACCTTAGAGTAT	0.303000													43	73					0	0	0.000147903	0	0
GABRG1	2565	broad.mit.edu	37	4	46067413	46067413	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr4:46067413A>C	uc003gxb.2	-	4	662	c.510T>G	c.(508-510)ATT>ATG	p.I170M		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	170	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CATCATTCCAAATTCGAAGCA	0.323000													57	90					0	0	0.000147903	0	0
EXOC1	55763	broad.mit.edu	37	4	56765884	56765885	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr4:56765884_56765885CC>AA	uc003hbe.1	+	17	2329_2330	c.2171_2172CC>AA	c.(2170-2172)CCC>CAA	p.P724Q	EXOC1_uc003hbf.1_Missense_Mutation_p.P724Q|EXOC1_uc003hbg.1_Missense_Mutation_p.P709Q	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	724					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					CAGAAGACCCCCAGGGATGTGG	0.332000													9	402					0	0	6.4e-05	0	0
PRSS48	345062	broad.mit.edu	37	4	152204317	152204317	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr4:152204317A>G	uc011cif.1	+	4	530	c.530A>G	c.(529-531)GAC>GGC	p.D177G	PRSS48_uc011cig.1_Missense_Mutation_p.D34G	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	177	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						CCCATTATTGACCGCCAGGCT	0.463000													95	99					0	0	0.000147903	0	0
BRD9	65980	broad.mit.edu	37	5	884140	884140	+	Silent	SNP	A	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr5:884140A>G	uc003jbq.2	-	8	1046	c.879T>C	c.(877-879)AGT>AGC	p.S293S	BRD9_uc003jbl.2_Silent_p.S177S|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Silent_p.S240S|BRD9_uc003jbo.2_Silent_p.S197S|BRD9_uc003jbp.2_5'Flank|BRD9_uc011cmc.1_RNA	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	293							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			CCTCTGCGGTACTGTCCGTCA	0.627000													9	31					0	0	0.000151284	0	0
SPZ1	84654	broad.mit.edu	37	5	79616044	79616044	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr5:79616044T>A	uc003kgn.2	+	1	255	c.10T>A	c.(10-12)TCT>ACT	p.S4T	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		GATGGCCAGCTCTGCTAAGTC	0.468000													134	185					0	0	0.000147903	0	0
Unknown	0	broad.mit.edu	37	5	164028160	164028160	+	RNA	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr5:164028160C>T	uc003lzn.2	+	3		c.338C>T								Homo sapiens, clone IMAGE:4479080, mRNA, partial cds.																		CCGTTGTAGACGCCCACCCTG	0.592000													5	7					0	0	8.12818e-05	0	0
NSD1	64324	broad.mit.edu	37	5	176562150	176562150	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr5:176562150T>C	uc003mfr.3	+	2	184	c.46T>C	c.(46-48)TTT>CTT	p.F16L	NSD1_uc003mft.3_5'UTR|NSD1_uc003mfs.1_Missense_Mutation_p.F16L|NSD1_uc011dfx.1_5'UTR|NSD1_uc003mfp.2_Missense_Mutation_p.F16L|NSD1_uc003mfq.2_Missense_Mutation_p.F16L	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	16					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TCTGCTGCCCTTTTCCAATCC	0.448000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			3	211					0	0	0.00024832	0	0
OR11A1	26531	broad.mit.edu	37	6	29394894	29394894	+	Silent	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:29394894A>T	uc003nmg.2	-	1	616	c.525T>A	c.(523-525)ATT>ATA	p.I175I		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AAAACTGGTCAATGTGGTTGG	0.547000													12	16					0	0	0.000151284	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33391260	33391261	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:33391260_33391261GG>TT	uc011dri.1	+	2	269_270	c.74_75GG>TT	c.(73-75)CGG>CTT	p.R25L	SYNGAP1_uc003oeo.1_Missense_Mutation_p.R10L|SYNGAP1_uc010juy.2_Missense_Mutation_p.R10L	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	25					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CCAGATGTACGGGGACCCTCTA	0.520000													8	327					0	0	6.4e-05	0	0
PRPH2	5961	broad.mit.edu	37	6	42689566	42689566	+	Silent	SNP	G	A	A	rs61755790		TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:42689566G>A	uc003osk.2	-	1	793	c.507C>T	c.(505-507)AAC>AAT	p.N169N		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	169	Lumenal (Potential).		Missing (in some patients with macular dystrophy).		cell adhesion|visual perception	integral to membrane		p.N169N(1)		ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			CCCGAAAACCGTTGTTGCCGC	0.512000													64	140					0	0	0.000147903	0	0
SRF	6722	broad.mit.edu	37	6	43139845	43139845	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:43139845A>C	uc003oui.2	+	1	926	c.451A>C	c.(451-453)ATC>CTC	p.I151L	SRF_uc011dvf.1_5'Flank	NM_003131	NP_003122	P11831	SRF_HUMAN	serum response factor (c-fos serum response	151	MADS-box.|				angiogenesis involved in wound healing|cell migration involved in sprouting angiogenesis|cellular senescence|heart looping|muscle cell homeostasis|neuron development|positive regulation of cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of smooth muscle cell differentiation|response to cytokine stimulus|response to hormone stimulus|response to toxin|transcription from RNA polymerase II promoter|trophectodermal cell differentiation	endoplasmic reticulum	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			ovary(1)|breast(1)|central_nervous_system(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.011)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GATGGAGTTCATCGACAACAA	0.542000													5	37					0	0	1.23904e-05	0	0
DST	667	broad.mit.edu	37	6	56496732	56496732	+	Silent	SNP	G	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:56496732G>C	uc003pdf.2	-	28	3841	c.3813C>G	c.(3811-3813)CCC>CCG	p.P1271P	DST_uc003pcz.3_Silent_p.P1093P|DST_uc011dxj.1_Silent_p.P1122P|DST_uc011dxk.1_Silent_p.P1133P|DST_uc003pcy.3_Silent_p.P767P|DST_uc003pdb.2_Silent_p.P767P|DST_uc003pdc.3_Silent_p.P767P|DST_uc003pdd.3_Silent_p.P767P	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1093					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CTCTTTCCAGGGGAGTTCGAA	0.383000													31	110					0	0	7.24521e-05	0	0
DST	667	broad.mit.edu	37	6	56504763	56504763	+	Silent	SNP	T	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:56504763T>C	uc003pdf.2	-	18	2512	c.2484A>G	c.(2482-2484)GAA>GAG	p.E828E	DST_uc003pcz.3_Silent_p.E650E|DST_uc011dxj.1_Silent_p.E679E|DST_uc011dxk.1_Silent_p.E690E|DST_uc011dxl.1_Silent_p.E679E|DST_uc003pcy.3_Silent_p.E324E|DST_uc003pdb.2_Silent_p.E324E|DST_uc003pdc.3_Silent_p.E324E|DST_uc003pdd.3_Silent_p.E324E|DST_uc003pde.2_Silent_p.E766E	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	650					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TAGATTCAAATTCTTCAATAG	0.328000													37	94					0	0	0.000159656	0	0
FUT9	10690	broad.mit.edu	37	6	96651149	96651149	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:96651149C>A	uc003pop.3	+	3	459	c.118C>A	c.(118-120)CCA>ACA	p.P40T		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	40	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		GATCTTCAGTCCAATGGAATC	0.398000													32	10					2.2171e-23	8.2363e-22	0.000279167	1	0
RADIL	55698	broad.mit.edu	37	7	4874542	4874542	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr7:4874542C>T	uc003snj.1	-	4	1285	c.1112G>A	c.(1111-1113)CGC>CAC	p.R371H	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_5'Flank|RADIL_uc011jwc.1_Missense_Mutation_p.R131H|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	371	FHA.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		AGCCCGGAGGCGCGCCAAGGC	0.771000													5	5					0	0	1.23904e-05	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612392	54612392	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr7:54612392G>C	uc010kzf.2	+	2	562	c.157G>C	c.(157-159)GGC>CGC	p.G53R	VSTM2A_uc010kze.2_Missense_Mutation_p.G53R|VSTM2A_uc003tqc.3_Missense_Mutation_p.G53R	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	53	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			CTTCCAGAGCGGCTCCGCCTC	0.647000													5	38					0	0	3.59834e-05	0	0
FAM40B	57464	broad.mit.edu	37	7	129091519	129091519	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr7:129091519G>A	uc011koy.1	+	4	380	c.340G>A	c.(340-342)GAC>AAC	p.D114N	FAM40B_uc003vow.2_Missense_Mutation_p.D114N	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	114											0						GGGACTCTTGGACCGGCTAGA	0.552000													38	26					0	0	0.000374591	0	0
SSPO	23145	broad.mit.edu	37	7	149519711	149519711	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr7:149519711G>A	uc010lpk.2	+	92	13201	c.13201G>A	c.(13201-13203)GCC>ACC	p.A4401T	SSPO_uc010lpm.1_Intron|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4401	TSP type-1 22.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAGGGCAGGCGCCCCCTGCAC	0.692000													8	4					0	0	2.17888e-05	0	0
PLEKHA2	59339	broad.mit.edu	37	8	38810862	38810863	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr8:38810862_38810863CC>AA	uc003xmi.3	+	9	984_985	c.750_751CC>AA	c.(748-753)ACCCAT>ACAAAT	p.H251N	PLEKHA2_uc011lce.1_Missense_Mutation_p.H201N	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	251	PH 2.				positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			TTCTGAAGACCCATGAATGTCT	0.441000													8	197					0	0	6.4e-05	0	0
PTPDC1	138639	broad.mit.edu	37	9	96850154	96850154	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr9:96850154A>T	uc004auf.1	+	4	636	c.296A>T	c.(295-297)GAG>GTG	p.E99V	PTPDC1_uc004aug.1_Missense_Mutation_p.E99V|PTPDC1_uc004auh.1_Missense_Mutation_p.E151V|PTPDC1_uc010mrj.1_Missense_Mutation_p.E153V|PTPDC1_uc010mri.1_Missense_Mutation_p.E151V	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	99							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						CCATCCTCTGAGCTCCTGGAG	0.468000													56	81					0	0	0.000147903	0	0
HABP4	22927	broad.mit.edu	37	9	99233343	99233343	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr9:99233343C>A	uc010msg.2	+	5	942	c.794C>A	c.(793-795)TCC>TAC	p.S265Y	HABP4_uc010msh.2_Intron	NM_014282	NP_055097	Q5JVS0	HABP4_HUMAN	hyaluronan binding protein 4	265					platelet activation|platelet degranulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|extracellular region|nucleus	protein binding			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0169)|all_hematologic(171;0.214)				GTGGAGGAGTCCCAGGGCACC	0.458000													34	54					9.65963e-10	3.40722e-08	8.91981e-05	1	0
MAP3K15	389840	broad.mit.edu	37	X	19389081	19389081	+	Silent	SNP	G	A	A			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chrX:19389081G>A	uc004czk.1	-	25	3458	c.1821C>T	c.(1819-1821)ATC>ATT	p.I607I	MAP3K15_uc004czj.1_Silent_p.I567I|MAP3K15_uc004czi.1_Silent_p.I66I	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1132							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					GCTCACCTGGGATGAGAATGG	0.478000													37	48					0	0	0.000106405	0	0
DDX53	168400	broad.mit.edu	37	X	23018497	23018497	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chrX:23018497C>G	uc004daj.2	+	1	411	c.323C>G	c.(322-324)GCT>GGT	p.A108G		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	108	KH.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						GCCAAAGCGGCTATAGAAACA	0.383000													18	113					0	0	5.01169e-05	0	0
ZNF630	57232	broad.mit.edu	37	X	47919835	47919835	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chrX:47919835A>T	uc004div.3	-	4	484	c.232T>A	c.(232-234)TAC>AAC	p.Y78N	ZNF630_uc010nhz.1_RNA|ZNF630_uc004diw.2_5'UTR	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	78	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						TTACCTGGGTAGATCCACCTT	0.408000													41	53					0	0	0.000147903	0	0
AR	367	broad.mit.edu	37	X	66765795	66765795	+	Silent	SNP	C	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chrX:66765795C>T	uc004dwu.1	+	1	1922	c.807C>T	c.(805-807)TAC>TAT	p.Y269Y	AR_uc011mpd.1_Silent_p.Y269Y|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Silent_p.Y269Y	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	267	Modulating.			Y->F: Decrease of CSK-induced phosphorylation and phosphorylation by TNK2. Complete loss of TNK2-dependent phosphorylation; when associated with F- 363.	cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	ATTGCATGTACGCCCCACTTT	0.597000									Androgen_Insensitivity_Syndrome				18	33					0	0	9.7654e-05	0	0
NUP62CL	54830	broad.mit.edu	37	X	106397458	106397458	+	Silent	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chrX:106397458C>G	uc004ena.2	-	5	472	c.213G>C	c.(211-213)GTG>GTC	p.V71V	NUP62CL_uc004enb.2_Intron	NM_017681	NP_060151	Q9H1M0	N62CL_HUMAN	nucleoporin 62kDa C-terminal like	71					protein transport	nuclear pore	structural constituent of nuclear pore				0						CATATGTCATCACAGGAGTTG	0.388000													19	63					0	0	0.000175454	0	0
CNGA2	1260	broad.mit.edu	37	X	150911807	150911807	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chrX:150911807C>G	uc004fey.1	+	7	1056	c.832C>G	c.(832-834)CTT>GTT	p.L278V		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	278	Helical; Name=H4; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CATCAGCAACCTTGTCCTCTA	0.512000													19	88					0	0	0.000132079	0	0
BTAF1	9044	broad.mit.edu	37	10	93719631	93719633	+	In_Frame_Del	DEL	TGA	-	-			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr10:93719631_93719633delTGA	uc001khr.2	+	10	1178_1180	c.1080_1082delTGA	c.(1078-1083)TCTGAT>TCT	p.D361del	BTAF1_uc009xua.1_RNA|BTAF1_uc001khs.1_In_Frame_Del_p.D31del	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	361					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				ACTTTGTTTCTGATGAAGTAAGT	0.335													27	10	---	---	---	---					
FAM179B	23116	broad.mit.edu	37	14	45478274	45478274	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr14:45478274delC	uc001wvv.2	+	6	3272	c.3063delC	c.(3061-3063)TACfs	p.Y1021fs	FAM179B_uc001wvw.2_Frame_Shift_Del_p.Y1021fs|FAM179B_uc010anc.2_Intron	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1021	Ser-rich.						binding			skin(2)|upper_aerodigestive_tract(1)	3						TCAATTCTTACAGTGAAAGTG	0.418													27	39	---	---	---	---					
DEFB113	245927	broad.mit.edu	37	6	49936566	49936566	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:49936566delT	uc011dwq.1	-	2	73	c.73delA	c.(73-75)ACAfs	p.T25fs		NM_001037729	NP_001032818	Q30KQ7	DB113_HUMAN	beta-defensin 113 precursor	25					defense response to bacterium	extracellular region					0	Lung NSC(77;0.042)					ACTTCTCTTGTTTTTTTCTGT	0.353													21	47	---	---	---	---					
ICK	22858	broad.mit.edu	37	6	52883129	52883129	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr6:52883129delT	uc003pbh.2	-	8	1152	c.662delA	c.(661-663)AAGfs	p.K221fs	ICK_uc003pbi.2_Frame_Shift_Del_p.K221fs|ICK_uc003pbj.2_Frame_Shift_Del_p.K221fs	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	221	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TATCATTACCTTTTTTGGTGT	0.502													10	430	---	---	---	---					
TSGA13	114960	broad.mit.edu	37	7	130357651	130357652	+	Frame_Shift_Ins	INS	-	T	T			TCGA-FS-A1ZJ-06A-12D-A197-08	TCGA-FS-A1ZJ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	adc4bda9-4163-4f2e-8f17-a00b1f0a28d6	5c310b50-8cea-4b46-a88c-ca87f1daca30	g.chr7:130357651_130357652insT	uc003vqi.2	-	6	909_910	c.452_453insA	c.(451-453)AAGfs	p.K151fs	TSGA13_uc003vqj.2_Frame_Shift_Ins_p.K151fs	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	151										ovary(2)	2	Melanoma(18;0.0435)					TAGATCTTAACTTTTTTTTCTG	0.450													7	880	---	---	---	---					
