Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CA6	765	broad.mit.edu	37	1	9017341	9017341	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:9017341C>T	uc001apm.2	+	3	429	c.405C>T	c.(403-405)ATC>ATT	p.I135I	CA6_uc009vmn.2_Silent_p.I75I	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	135					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		GACATGTGATCGAGGTACCTG	0.433													22	24					0	0	0.000720815	0	0
DHRS3	9249	broad.mit.edu	37	1	12628406	12628406	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:12628406G>A	uc001auc.2	-	6	1339	c.872C>T	c.(871-873)ACC>ATC	p.T291I	DHRS3_uc001aub.2_Missense_Mutation_p.T206I	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	291					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	GCAGGTGTAGGTTCCTGAGAA	0.527													40	58					0	0	0.000781405	0	0
PADI1	29943	broad.mit.edu	37	1	17557156	17557156	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:17557156C>T	uc001bah.1	+	10	1235	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	PADI1_uc010oco.1_5'Flank|PADI1_uc010ocp.1_5'Flank|PADI1_uc010ocq.1_5'Flank	NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	381					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	TGAAAGATTTCCCCTATAAGA	0.567													7	11					0	0	0.000157383	0	0
PADI3	51702	broad.mit.edu	37	1	17603120	17603120	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:17603120G>A	uc001bai.2	+	12	1454	c.1414G>A	c.(1414-1416)GAT>AAT	p.D472N		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	472					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GGGCCATGTGGATGAGTTTCT	0.612													14	35					0	0	0.000566183	0	0
UBR4	23352	broad.mit.edu	37	1	19443892	19443892	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:19443892G>A	uc001bbi.2	-	73	10650	c.10646C>T	c.(10645-10647)TCC>TTC	p.S3549F	UBR4_uc001bbj.1_5'UTR	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3549					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CACTTTAATGGAAGACAGCTT	0.423													32	50					0	0	0.000692331	0	0
LUZP1	7798	broad.mit.edu	37	1	23418816	23418816	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:23418816G>A	uc001bgk.2	-	4	2323	c.1939C>T	c.(1939-1941)CGA>TGA	p.R647*	LUZP1_uc010odv.1_Nonsense_Mutation_p.R647*|LUZP1_uc001bgl.2_Nonsense_Mutation_p.R647*|LUZP1_uc001bgm.1_Nonsense_Mutation_p.R647*	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	647						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		TTGATGACTCGACACCTCAAG	0.463													77	94					0	0	0.000781405	0	0
IL28RA	163702	broad.mit.edu	37	1	24484325	24484325	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:24484325G>A	uc001bis.2	-	7	871	c.858C>T	c.(856-858)TCC>TCT	p.S286S	IL28RA_uc001bir.2_Intron|IL28RA_uc001bit.2_Missense_Mutation_p.R243C|IL28RA_uc001biu.2_Silent_p.S202S	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	286	Cytoplasmic (Potential).				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		AGTCATTCACGGACTCTGGTC	0.542													35	77					0	0	0.00058488	0	0
PTPRU	10076	broad.mit.edu	37	1	29581881	29581881	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:29581881C>T	uc001bru.2	+	2	278	c.168C>T	c.(166-168)ATC>ATT	p.I56I	PTPRU_uc001brv.2_Silent_p.I56I|PTPRU_uc001brw.2_Silent_p.I56I|PTPRU_uc009vtq.2_Silent_p.I56I|PTPRU_uc009vtr.2_Silent_p.I56I	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	56	Extracellular (Potential).|MAM.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		AAGTGCGAATCCACCCTGGCA	0.527													19	38					0	0	0.00152264	0	0
PEF1	553115	broad.mit.edu	37	1	32096252	32096252	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:32096252C>G	uc001bth.1	-	5	829	c.817G>C	c.(817-819)GAG>CAG	p.E273Q	HCRTR1_uc010ogl.1_Intron|PEF1_uc001bte.1_3'UTR|PEF1_uc001btf.1_Missense_Mutation_p.E112Q|PEF1_uc001btg.1_Missense_Mutation_p.E203Q	NM_012392	NP_036524	Q9UBV8	PEF1_HUMAN	penta-EF-hand domain containing 1	273	EF-hand 5.|Required for interaction with PDCD6.				response to calcium ion	cytoplasm|membrane	calcium ion binding|protein heterodimerization activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)|all_neural(195;0.186)		STAD - Stomach adenocarcinoma(196;0.0546)		ACGAAGTCCTCGAAGCTGAGC	0.562													3	17					0	0	0.00024832	0	0
TMEM39B	55116	broad.mit.edu	37	1	32560459	32560459	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:32560459C>T	uc010ogv.1	+	7	1148	c.1002C>T	c.(1000-1002)CTC>CTT	p.L334L	TMEM39B_uc010ogt.1_RNA|TMEM39B_uc010ogu.1_Silent_p.L207L|TMEM39B_uc001bue.3_Silent_p.L335L|TMEM39B_uc001buf.3_Silent_p.L135L|TMEM39B_uc010ogw.1_Silent_p.L135L	NM_018056	NP_060526	Q9GZU3	TM39B_HUMAN	transmembrane protein 39B	334	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CCGTGATCCTCATGCAGCACC	0.602													29	37					0	0	0.00209593	0	0
CSMD2	114784	broad.mit.edu	37	1	34090134	34090134	+	Silent	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:34090134T>C	uc001bxn.1	-	35	5519	c.5490A>G	c.(5488-5490)GAA>GAG	p.E1830E	CSMD2_uc001bxm.1_Silent_p.E1870E|CSMD2_uc001bxo.1_Silent_p.E743E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1830	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCCAGCGCCTTCGGGGACCA	0.647													23	28					0	0	0.000586117	0	0
KCNQ4	9132	broad.mit.edu	37	1	41283874	41283874	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:41283874C>T	uc001cgh.1	+	3	526	c.444C>T	c.(442-444)ATC>ATT	p.I148I	KCNQ4_uc001cgi.1_Silent_p.I148I	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	148	Helical; Name=Segment S2; (Potential).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			TGGAGTACATCGTCCGGGTCT	0.607													25	56					0	0	0.000720815	0	0
IPP	3652	broad.mit.edu	37	1	46195343	46195343	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:46195343G>A	uc001cou.2	-	4	1090	c.823C>T	c.(823-825)CTG>TTG	p.L275L	IPP_uc001cos.3_Silent_p.L275L	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	275						actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GATGTCTGCAGAAAACTACAA	0.373													32	54					0	0	0.000953801	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47333640	47333640	+	RNA	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:47333640C>T	uc001cqo.1	-	8		c.1087G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						AGACCCATCCCCTAGGAGTTC	0.423													4	9					0	0	0.000602214	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47333652	47333652	+	RNA	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:47333652C>T	uc001cqo.1	-	8		c.1075G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TAGGAGTTCCCTGATTTCATC	0.428													4	13					0	0	0.000602214	0	0
CYP4A11	1579	broad.mit.edu	37	1	47399653	47399653	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:47399653G>A	uc001cqp.3	-	9	1238	c.1187C>T	c.(1186-1188)CCC>CTC	p.P396L	CYP4A11_uc001cqq.2_Missense_Mutation_p.P396L|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	396					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GAAGGTGACGGGAGTGCTGAG	0.582													10	25					0	0	0.00136819	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47533216	47533216	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:47533216C>T	uc001cqu.1	+	1	57	c.54C>T	c.(52-54)ATC>ATT	p.I18I		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	18	Helical; Signal-anchor for type II membrane protein; (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TGCTGCTGATCCTCCTCTGCA	0.562													10	20					0	0	0.00185496	0	0
DMRTB1	63948	broad.mit.edu	37	1	53927154	53927154	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:53927154C>T	uc001cvq.1	+	2	641	c.586C>T	c.(586-588)CTG>TTG	p.L196L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	196	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						AGTGCGCCCTCTGAACATCAA	0.662													22	39					0	0	0.00127121	0	0
ACOT11	26027	broad.mit.edu	37	1	55072900	55072900	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:55072900C>T	uc001cxm.1	+	14	1546	c.1464C>T	c.(1462-1464)TTC>TTT	p.F488F	ACOT11_uc001cxj.1_Silent_p.F366F|ACOT11_uc001cxl.1_Silent_p.F488F	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	488	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CCCAGGACTTCGTGATCCTGG	0.627													8	22					0	0	0.000442599	0	0
C1orf168	199920	broad.mit.edu	37	1	57257776	57257776	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:57257776C>T	uc001cym.3	-	2	1116	c.710G>A	c.(709-711)AGC>AAC	p.S237N	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.S237N	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	237										ovary(3)|skin(2)	5						CTGGCAGGGGCTGCTTGCCGG	0.498													35	61					0	0	0.00283554	0	0
C8A	731	broad.mit.edu	37	1	57349331	57349331	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:57349331G>A	uc001cyo.2	+	6	964	c.832G>A	c.(832-834)GAA>AAA	p.E278K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	278	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						ATTCTTGAACGAATTAAACAA	0.403													17	31					0	0	0.000566183	0	0
DEPDC1	55635	broad.mit.edu	37	1	68955286	68955286	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:68955286G>A	uc001dem.3	-	3	437	c.320C>T	c.(319-321)CCT>CTT	p.P107L	DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.P107L	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	107	DEP.				intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		CGAAGTTGCAGGAAATCTGGT	0.289													20	46					0	0	0.00152264	0	0
TNNI3K	51086	broad.mit.edu	37	1	74737367	74737367	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:74737367T>G	uc001dgf.1	+	5	470	c.419T>G	c.(418-420)ATT>AGT	p.I140S	TNNI3K_uc001dgc.1_Missense_Mutation_p.I241S|TNNI3K_uc001dgd.2_Missense_Mutation_p.I241S|TNNI3K_uc001dge.1_Missense_Mutation_p.I241S	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	140	ANK 3.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GCCCTCCATATTGCTACAATA	0.428													43	80					0	0	0.0025221	0	0
BCL10	8915	broad.mit.edu	37	1	85742019	85742019	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:85742019G>T	uc001dkz.2	-	2	722	c.17C>A	c.(16-18)CCG>CAG	p.P6Q	uc001dla.1_5'Flank	NM_003921	NP_003912	O95999	BCL10_HUMAN	B-cell CLL/lymphoma 10	6					apoptosis|cellular response to mechanical stimulus|innate immune response|interleukin-6 biosynthetic process|lymphotoxin A biosynthetic process|negative regulation of mature B cell apoptosis|neural tube closure|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 biosynthetic process|positive regulation of mast cell cytokine production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of transcription, DNA-dependent|protein homooligomerization|response to molecule of bacterial origin|T cell receptor signaling pathway	CBM complex|cytosol|lysosome|membrane raft|nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protease binding|protein C-terminus binding|protein kinase B binding|protein self-association|transcription coactivator activity|ubiquitin binding|ubiquitin protein ligase binding			lung(2)	2				all cancers(265;0.0114)|Epithelial(280;0.0311)		GGTGAGGGACGGTGCGGTGGG	0.726			T	IGH@	MALT 								4	37					0.00116845	0.00509779	0.00116845	1	0
HFM1	164045	broad.mit.edu	37	1	91843722	91843722	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:91843722C>T	uc001doa.3	-	11	1355	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	HFM1_uc010osu.1_Missense_Mutation_p.E98K|HFM1_uc010osv.1_Missense_Mutation_p.E103K|HFM1_uc001doc.1_Missense_Mutation_p.E419K	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	419	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		CCACGATTTTCATCTTTTACA	0.274													18	34					0	0	0.00188189	0	0
SORT1	6272	broad.mit.edu	37	1	109859567	109859567	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:109859567G>A	uc001dxm.1	-	17	2204	c.2155C>T	c.(2155-2157)CCA>TCA	p.P719S	SORT1_uc010ovi.1_Missense_Mutation_p.P582S	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	719	Interactions with LRPAP1 and NGFB.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		TTGTCCCCTGGAATTTTCCGG	0.413													126	225					0	0	0.000781405	0	0
LOC149620	149620	broad.mit.edu	37	1	111825284	111825284	+	RNA	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:111825284G>A	uc009wgb.2	+	3		c.1047G>A				NR_003928				Homo sapiens CHIA-like pseudogene, mRNA (cDNA clone IMAGE:5176731).												0						TGACGGGCTGGACTTTGACTG	0.517													22	25					0	0	0.00047179	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114450741	114450741	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:114450741C>T	uc001eeg.2	+	3	637	c.466C>T	c.(466-468)CCT>TCT	p.P156S	AP4B1_uc001eed.2_5'Flank|AP4B1_uc010owp.1_5'Flank|DCLRE1B_uc001eeh.2_Missense_Mutation_p.P30S|DCLRE1B_uc001eei.2_Missense_Mutation_p.P30S	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	156					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTGGTTCTTCCTTCCCGACA	0.463								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					30	66					0	0	0.00283554	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			47	81					0	0	0.000781405	0	0
HAO2	51179	broad.mit.edu	37	1	119936430	119936430	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:119936430C>T	uc001ehq.1	+	9	1375	c.1023C>T	c.(1021-1023)ATC>ATT	p.I341I	HAO2_uc001ehr.1_Silent_p.I341I	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	341	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TCGCTGAGATCAATCGAAACT	0.473													45	80					0	0	0.000781405	0	0
ADAM30	11085	broad.mit.edu	37	1	120438014	120438014	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:120438014C>T	uc001eij.2	-	1	1100	c.946G>A	c.(946-948)GAA>AAA	p.E316K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	316	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CCAGCATATTCTAGAGAACAC	0.408													230	411					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120506229	120506229	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:120506229C>T	uc001eik.2	-	11	2139	c.1883G>A	c.(1882-1884)GGC>GAC	p.G628D	NOTCH2_uc001eil.2_Missense_Mutation_p.G628D|NOTCH2_uc001eim.3_Missense_Mutation_p.G545D	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	628	Extracellular (Potential).|EGF-like 16; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCACTGGTAGCCATTGACCAG	0.502			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				100	192					0	0	0.000781405	0	0
NBPF10	100132406	broad.mit.edu	37	1	145323702	145323703	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:145323702_145323703CC>AA	uc001end.3	+	29	3799_3800	c.3764_3765CC>AA	c.(3763-3765)CCC>CAA	p.P1255Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oym.1_Intron|NBPF10_uc010oyn.1_Intron|NBPF10_uc010oyo.1_Intron|NBPF10_uc010oyp.1_5'Flank	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	1180											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CCACCATGCCCCAGGTAACTGA	0.45													13	607					0	0	6.4e-05	0	0
ITGA10	8515	broad.mit.edu	37	1	145531024	145531024	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:145531024C>T	uc001eoa.2	+	7	832	c.756C>T	c.(754-756)GCC>GCT	p.A252A	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Silent_p.A121A|ITGA10_uc009wiw.2_Silent_p.A109A|ITGA10_uc010oyw.1_Silent_p.A197A	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	252	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TAATGGTGGCCTGGTGAGGCA	0.448													9	35					0	0	0.000978159	0	0
HRNR	388697	broad.mit.edu	37	1	152188506	152188506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152188506G>A	uc001ezt.1	-	3	5675	c.5599C>T	c.(5599-5601)CAG>TAG	p.Q1867*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1867	20.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGAAGACTGACCTGAGCCA	0.577													22	719					0	0	0.00127121	0	0
FLG	2312	broad.mit.edu	37	1	152281693	152281693	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152281693G>A	uc001ezu.1	-	3	5705	c.5669C>T	c.(5668-5670)TCT>TTT	p.S1890F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1890	Ser-rich.|Filaggrin 11.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCGGCCCGAGAGGAAGCTTC	0.577									Ichthyosis				95	206					0	0	0.000781405	0	0
FLG	2312	broad.mit.edu	37	1	152282477	152282477	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152282477C>T	uc001ezu.1	-	3	4921	c.4885G>A	c.(4885-4887)GGC>AGC	p.G1629S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1629	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCTGGAGCCATGTCTTGAC	0.552									Ichthyosis				49	102					0	0	0.000781405	0	0
FLG	2312	broad.mit.edu	37	1	152282710	152282710	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152282710C>T	uc001ezu.1	-	3	4688	c.4652G>A	c.(4651-4653)GGA>GAA	p.G1551E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1551	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAGCCGTCTCCTGATTGTTC	0.597									Ichthyosis				56	155					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152325386	152325386	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152325386C>T	uc001ezw.3	-	3	4949	c.4876G>A	c.(4876-4878)GAT>AAT	p.D1626N	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1626	Filaggrin 6.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGTGGTATCTCCTATCTGT	0.507													101	133					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152326202	152326202	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152326202C>T	uc001ezw.3	-	3	4133	c.4060G>A	c.(4060-4062)GAA>AAA	p.E1354K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1354							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGTGCACTTCACTGTCAGTG	0.483													35	104					0	0	0.00283554	0	0
CRNN	49860	broad.mit.edu	37	1	152382122	152382122	+	Missense_Mutation	SNP	C	T	T	rs138795800		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:152382122C>T	uc001ezx.2	-	3	1510	c.1436G>A	c.(1435-1437)CGA>CAA	p.R479Q		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	479					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGATGCCTCGCTTCTCTTC	0.542													22	52					0	0	0.00229938	0	0
KCNN3	3782	broad.mit.edu	37	1	154698412	154698412	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:154698412C>T	uc001ffp.2	-	5	1995	c.1681G>A	c.(1681-1683)GAC>AAC	p.D561N	KCNN3_uc001ffo.2_Missense_Mutation_p.D256N	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	566	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			AGCTGAGTGTCCATCATGAAG	0.552													8	33					0	0	0.000157383	0	0
TRIM46	80128	broad.mit.edu	37	1	155156512	155156512	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:155156512C>T	uc001fhs.1	+	10	2209	c.2126C>T	c.(2125-2127)TCC>TTC	p.S709F	RAG1AP1_uc010pey.1_Intron|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.S583F|TRIM46_uc001fhu.1_Missense_Mutation_p.S686F|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	709	B30.2/SPRY.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GATGCTGTTTCCTTCCGTGGG	0.662													15	16					0	0	0.00074312	0	0
SEMA4A	64218	broad.mit.edu	37	1	156130705	156130705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:156130705C>T	uc001fnl.2	+	8	799	c.695C>T	c.(694-696)TCC>TTC	p.S232F	SEMA4A_uc009wrq.2_Missense_Mutation_p.S232F|SEMA4A_uc001fnm.2_Missense_Mutation_p.S232F|SEMA4A_uc001fnn.2_Missense_Mutation_p.S100F|SEMA4A_uc001fno.2_Missense_Mutation_p.S232F	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	232	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GATGACGCCTCCTTTGTGGCA	0.602													42	52					0	0	0.00195071	0	0
SPTA1	6708	broad.mit.edu	37	1	158585152	158585152	+	Silent	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:158585152G>T	uc001fst.1	-	48	6841	c.6642C>A	c.(6640-6642)ACC>ACA	p.T2214T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2214	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCACAATCTTGGTTAGTTGAC	0.483													54	122					2.93687e-30	1.30115e-29	0.000781405	1	0
PYHIN1	149628	broad.mit.edu	37	1	158906860	158906860	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:158906860G>A	uc001ftb.2	+	2	405	c.160G>A	c.(160-162)GAA>AAA	p.E54K	PYHIN1_uc001fta.3_Missense_Mutation_p.E54K|PYHIN1_uc001ftc.2_Missense_Mutation_p.E54K|PYHIN1_uc001ftd.2_Missense_Mutation_p.E54K|PYHIN1_uc001fte.2_Missense_Mutation_p.E54K	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	54	DAPIN.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					CTTGATGGAGGAAAAGTTCCC	0.348													30	46					0	0	0.00127121	0	0
APCS	325	broad.mit.edu	37	1	159558294	159558294	+	Silent	SNP	G	A	A	rs41317511		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:159558294G>A	uc001ftv.2	+	2	564	c.468G>A	c.(466-468)CAG>CAA	p.Q156Q		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	156	Pentaxin.	Calcium 1; via carbonyl oxygen.			acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					GGCAGGAACAGGATTCCTATG	0.493													15	28					0	0	0.000308642	0	0
APCS	325	broad.mit.edu	37	1	159558342	159558342	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:159558342G>A	uc001ftv.2	+	2	612	c.516G>A	c.(514-516)GAG>GAA	p.E172E		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	172	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					TTGTGGGAGAGATTGGGGATT	0.532													22	24					0	0	0.00229938	0	0
DCAF6	55827	broad.mit.edu	37	1	168014467	168014467	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:168014467T>C	uc001gew.2	+	14	2269	c.2027_splice	c.e14+2	p.R676_splice	DCAF6_uc001gev.2_Splice_Site_p.R696_splice|DCAF6_uc001gex.2_Splice_Site_p.R753_splice|DCAF6_uc010plk.1_Splice_Site_p.R722_splice|DCAF6_uc001gey.2_Splice_Site_p.R549_splice|DCAF6_uc001gez.2_Splice_Site	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b						positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGGTGATAGGTTGGTAAATTT	0.418													8	31					0	0	0.000157383	0	0
C1orf129	80133	broad.mit.edu	37	1	170961410	170961410	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:170961410G>A	uc001ghg.2	+	12	1264	c.1134G>A	c.(1132-1134)GAG>GAA	p.E378E	C1orf129_uc009wvy.2_Silent_p.E185E|C1orf129_uc010plz.1_Silent_p.E378E	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	378							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GGGAAATGGAGGACACCGTAA	0.468													23	54					0	0	0.000586117	0	0
TNN	63923	broad.mit.edu	37	1	175092773	175092773	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:175092773A>G	uc001gkl.1	+	12	3001	c.2888A>G	c.(2887-2889)AAG>AGG	p.K963R		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	963	Fibronectin type-III 8.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAGGAGAGCAAGAAGGCTGAC	0.622													3	48					0	0	6.4e-05	0	0
PAPPA2	60676	broad.mit.edu	37	1	176671742	176671742	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:176671742G>A	uc001gkz.2	+	9	4401	c.3237_splice	c.e9-1	p.V1079_splice	PAPPA2_uc009www.2_Splice_Site	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1						cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGTTTCCACAGGGAGGTCACA	0.498													13	28					0	0	0.00136819	0	0
FAM5B	57795	broad.mit.edu	37	1	177249985	177249985	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:177249985A>C	uc001glf.2	+	8	1985	c.1673A>C	c.(1672-1674)AAG>ACG	p.K558T	FAM5B_uc001glg.2_Missense_Mutation_p.K453T	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	558						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAGAGCAACAAGTACAAGCCT	0.547													3	25					0	0	6.4e-05	0	0
FAM5B	57795	broad.mit.edu	37	1	177250635	177250635	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:177250635G>A	uc001glf.2	+	8	2635	c.2323G>A	c.(2323-2325)GAA>AAA	p.E775K	FAM5B_uc001glg.2_Missense_Mutation_p.E670K	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	775						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAACCCTGTGGAATATGAGAC	0.542													39	58					0	0	0.000680045	0	0
RALGPS2	55103	broad.mit.edu	37	1	178846662	178846663	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:178846662_178846663GA>AT	uc001glz.2	+	9	975_976	c.637_638GA>AT	c.(637-639)GAT>ATT	p.D213I	RALGPS2_uc001gly.1_Missense_Mutation_p.D213I|RALGPS2_uc010pnb.1_Missense_Mutation_p.D213I	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	213	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						AACATACATCGATTCAGCATAC	0.337													14	51					0	0	6.4e-05	0	0
TDRD5	163589	broad.mit.edu	37	1	179631372	179631372	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:179631372G>A	uc001gnf.1	+	14	2544	c.2294G>A	c.(2293-2295)AGC>AAC	p.S765N	TDRD5_uc010pnp.1_Missense_Mutation_p.S819N|TDRD5_uc001gnh.1_Missense_Mutation_p.S320N	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	765					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TTTACTGCAAGCCTTGGTGGA	0.373													9	43					0	0	0.000978159	0	0
CEP350	9857	broad.mit.edu	37	1	179989945	179989945	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:179989945A>T	uc001gnt.2	+	12	3419	c.3036A>T	c.(3034-3036)TTA>TTT	p.L1012F	CEP350_uc009wxl.2_Missense_Mutation_p.L1011F|CEP350_uc001gnu.2_Missense_Mutation_p.L846F	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1012						centrosome|nucleus|spindle				ovary(4)	4						CAGAAATTTTAAAAGAAAAGG	0.408													27	62					0	0	0.000720815	0	0
CEP350	9857	broad.mit.edu	37	1	180062691	180062691	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:180062691C>T	uc001gnt.2	+	34	7834	c.7451C>T	c.(7450-7452)TCC>TTC	p.S2484F	CEP350_uc009wxl.2_Missense_Mutation_p.S2483F|CEP350_uc001gnv.2_Missense_Mutation_p.S619F|CEP350_uc001gnw.1_Missense_Mutation_p.S241F|CEP350_uc001gnx.1_Missense_Mutation_p.S241F	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2484						centrosome|nucleus|spindle				ovary(4)	4						GAATCCCCTTCCTTGGCTTCA	0.453													13	26					0	0	0.00136819	0	0
CACNA1E	777	broad.mit.edu	37	1	181686335	181686335	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:181686335A>C	uc001gow.2	+	11	1587	c.1422A>C	c.(1420-1422)AAA>AAC	p.K474N	CACNA1E_uc009wxs.2_Missense_Mutation_p.K381N	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	474	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACATGGTTAAATCCCAGGTGT	0.542													8	78					0	0	0.000673444	0	0
CRB1	23418	broad.mit.edu	37	1	197398663	197398663	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:197398663G>A	uc001gtz.2	+	8	2896	c.2761G>A	c.(2761-2763)GCC>ACC	p.A921T	CRB1_uc010poz.1_Missense_Mutation_p.A897T|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.A809T|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.A402T|CRB1_uc001gub.1_Missense_Mutation_p.A570T	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	921	Extracellular (Potential).|EGF-like 13.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AAGTGGGAAAGCCTGTGAGGA	0.537													33	44					0	0	0.0024448	0	0
PTPRC	5788	broad.mit.edu	37	1	198725200	198725200	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:198725200C>T	uc001gur.1	+	33	3985	c.3805C>T	c.(3805-3807)CTC>TTC	p.L1269F	PTPRC_uc001gus.1_Missense_Mutation_p.L1221F|PTPRC_uc001gut.1_Missense_Mutation_p.L1108F	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	1269	Cytoplasmic (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CCCAGAAAAGCTCCCTGAAGC	0.433													23	58					0	0	0.00229938	0	0
KIF21B	23046	broad.mit.edu	37	1	200960786	200960786	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:200960786T>G	uc001gvs.1	-	17	2770	c.2453A>C	c.(2452-2454)GAG>GCG	p.E818A	KIF21B_uc001gvr.1_Missense_Mutation_p.E818A|KIF21B_uc009wzl.1_Missense_Mutation_p.E818A|KIF21B_uc010ppn.1_Missense_Mutation_p.E818A	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	818	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TGAGCTCACCTCCTGGGTCTT	0.607													14	13					0	0	0.000308642	0	0
NFASC	23114	broad.mit.edu	37	1	204948166	204948167	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:204948166_204948167CC>TT	uc001hbj.2	+	18	2275_2276	c.1947_1948CC>TT	c.(1945-1950)ATCCCC>ATTTCC	p.P650S	NFASC_uc010pra.1_Missense_Mutation_p.P646S|NFASC_uc001hbi.2_Missense_Mutation_p.P646S|NFASC_uc010prb.1_Missense_Mutation_p.P661S|NFASC_uc010prc.1_Missense_Mutation_p.P217S|NFASC_uc001hbk.1_Missense_Mutation_p.P456S|NFASC_uc001hbl.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	650	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TGACCTGGATCCCCGGGGATGC	0.639													3	3					0	0	6.4e-05	0	0
CNTN2	6900	broad.mit.edu	37	1	205027462	205027462	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:205027462G>A	uc001hbr.2	+	4	638	c.369G>A	c.(367-369)AGG>AGA	p.R123R	CNTN2_uc001hbq.1_5'UTR|CNTN2_uc009xbi.2_5'UTR|CNTN2_uc001hbs.2_5'Flank	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	123	Ig-like C2-type 1.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TTGTCAGCAGGGAGGCCATCC	0.627													15	23					0	0	0.000422831	0	0
RAB7L1	8934	broad.mit.edu	37	1	205739492	205739492	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:205739492G>A	uc001hdf.3	-	6	930	c.590C>T	c.(589-591)TCC>TTC	p.S197F	RAB7L1_uc009xbp.2_Missense_Mutation_p.S125F|RAB7L1_uc001hde.3_Missense_Mutation_p.S197F|RAB7L1_uc010prr.1_Missense_Mutation_p.S173F|RAB7L1_uc009xbq.2_RNA	NM_003929	NP_003920	O14966	RAB7L_HUMAN	RAB7, member RAS oncogene family-like 1 isoform	197					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			CCAGCTGGAGGACTTGGTTTG	0.433													9	33					0	0	0.000673444	0	0
FCAMR	83953	broad.mit.edu	37	1	207143468	207143468	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:207143468C>G	uc001hfa.3	-	1	503	c.3G>C	c.(1-3)ATG>ATC	p.M1I	FCAMR_uc001hfb.2_Missense_Mutation_p.M1I|FCAMR_uc009xca.1_Missense_Mutation_p.M1I|FCAMR_uc001hfc.2_Missense_Mutation_p.M1I	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	Error:Variant_position_missing_in_Q8WWV6_after_alignment						integral to membrane|plasma membrane	receptor activity			ovary(1)	1						CCTCTCCATCCATCTCAGTCC	0.493													3	75					0	0	0.000602214	0	0
RRP15	51018	broad.mit.edu	37	1	218475769	218475769	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:218475769C>T	uc001hlj.2	+	2	303	c.273C>T	c.(271-273)GGC>GGT	p.G91G		NM_016052	NP_057136	Q9Y3B9	RRP15_HUMAN	ribosomal RNA processing 15 homolog	91						mitochondrion|nucleolus	protein binding				0				all cancers(67;0.0315)|OV - Ovarian serous cystadenocarcinoma(81;0.0411)|GBM - Glioblastoma multiforme(131;0.06)|Epithelial(68;0.248)		CTAATATGGGCTGGGCAGATG	0.408													14	41					0	0	0.00244969	0	0
IARS2	55699	broad.mit.edu	37	1	220311351	220311351	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:220311351C>T	uc001hmc.2	+	17	2245	c.2141C>T	c.(2140-2142)TCC>TTC	p.S714F	IARS2_uc001hmd.2_Missense_Mutation_p.S50F	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	714					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	ATTGGCCCATCCGTGCTCAAT	0.408													28	69					0	0	0.000878237	0	0
EPHX1	2052	broad.mit.edu	37	1	226019506	226019506	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:226019506C>T	uc001hpk.2	+	3	290	c.210C>T	c.(208-210)TTC>TTT	p.F70F	EPHX1_uc001hpl.2_Silent_p.F70F	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	70					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					TCGATAAGTTCCGTTTCACCC	0.488													25	51					0	0	0.000720815	0	0
Unknown	0	broad.mit.edu	37	1	227618339	227618339	+	RNA	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:227618339C>T	uc001hqv.2	+	4		c.1574C>T								Homo sapiens cDNA clone IMAGE:5270051.																		GGCTGTGGGTCGAAGATATGC	0.502													12	26					0	0	0.00244969	0	0
PRSS38	339501	broad.mit.edu	37	1	228004911	228004911	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:228004911G>A	uc001hrh.2	+	3	313	c.313G>A	c.(313-315)GAC>AAC	p.D105N		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	105	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CCCCCACAGGGACAAGAATAT	0.577													14	32					0	0	0.000308642	0	0
PCNXL2	80003	broad.mit.edu	37	1	233275579	233275579	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:233275579G>A	uc001hvl.2	-	20	3775	c.3540C>T	c.(3538-3540)TTC>TTT	p.F1180F	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1180						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGAGTCTTTCGAACCACATTA	0.323													13	40					0	0	0.000308642	0	0
LYST	1130	broad.mit.edu	37	1	235969602	235969602	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:235969602G>A	uc001hxj.2	-	6	3009	c.2834C>T	c.(2833-2835)TCT>TTT	p.S945F	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.S945F	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	945					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GCTCTCGAGAGATATACATGG	0.483									Chediak-Higashi_syndrome				46	60					0	0	0.000781405	0	0
RYR2	6262	broad.mit.edu	37	1	237850796	237850796	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:237850796C>T	uc001hyl.1	+	63	9179	c.9059C>T	c.(9058-9060)TCA>TTA	p.S3020L	RYR2_uc010pxz.1_Intron	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3020	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATAGGATTTCACTATTTGGT	0.413													5	20					0	0	0.00116845	0	0
FMN2	56776	broad.mit.edu	37	1	240371478	240371478	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:240371478C>T	uc010pyd.1	+	5	3591	c.3366C>T	c.(3364-3366)CCC>CCT	p.P1122P	FMN2_uc010pye.1_Silent_p.P1126P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1122	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCTCCTCCCCCTCTACCCG	0.721													8	6					0	0	0.00136819	0	0
RGS7	6000	broad.mit.edu	37	1	240975228	240975228	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:240975228C>T	uc001hyv.2	-	14	1402	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	RGS7_uc010pyh.1_Missense_Mutation_p.E332K|RGS7_uc010pyj.1_Missense_Mutation_p.E274K|RGS7_uc001hyu.2_Missense_Mutation_p.E358K|RGS7_uc009xgn.1_Missense_Mutation_p.E305K|RGS7_uc001hyw.2_Missense_Mutation_p.E358K|RGS7_uc001hyt.2_Missense_Mutation_p.E190K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	358	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CTTAAATTTTCCGAGCTGAAT	0.398													34	27					0	0	0.000814825	0	0
KMO	8564	broad.mit.edu	37	1	241752099	241752099	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:241752099G>A	uc009xgp.2	+	12	1130	c.1065G>A	c.(1063-1065)GCG>GCA	p.A355A	KMO_uc001hyy.2_Silent_p.A355A|KMO_uc009xgo.1_Silent_p.A355A	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	355					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			ATGATCACGCGATTTCAGACC	0.363													19	57					0	0	0.00152264	0	0
SDCCAG8	10806	broad.mit.edu	37	1	243589849	243589849	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:243589849G>A	uc001hzw.2	+	16	2130	c.1974G>A	c.(1972-1974)ACG>ACA	p.T658T	SDCCAG8_uc010pyk.1_Silent_p.T513T|SDCCAG8_uc010pyl.1_Silent_p.T470T|SDCCAG8_uc001hzx.2_Silent_p.T391T	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	658	Mediates interaction with OFD1.|Gln-rich.|Potential.|Sufficient for homodimerization (By similarity).				establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		TACATGAGACGATGAAGCAAA	0.393													22	25					0	0	0.000586117	0	0
OR2L8	391190	broad.mit.edu	37	1	248112734	248112734	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:248112734G>A	uc001idt.1	+	1	575	c.575G>A	c.(574-576)TGG>TAG	p.W192*	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ATGGACACCTGGGTCTATGAG	0.468													8	16					0	0	0.00185496	0	0
OR2L3	391192	broad.mit.edu	37	1	248224840	248224841	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:248224840_248224841CC>AG	uc001idx.1	+	1	857_858	c.857_858CC>AG	c.(856-858)CCC>CAG	p.P286Q	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATGCTCAACCCCATCATCTATA	0.49													6	65					0	0	6.4e-05	0	0
OR2T12	127064	broad.mit.edu	37	1	248458752	248458752	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:248458752C>T	uc010pzj.1	-	1	129	c.129G>A	c.(127-129)ATG>ATA	p.M43I		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			TCAGGAGAATCATGAGGGCAT	0.522													29	50					0	0	0.00178596	0	0
OR2T3	343173	broad.mit.edu	37	1	248637188	248637188	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:248637188C>T	uc001iel.1	+	1	537	c.537C>T	c.(535-537)ATC>ATT	p.I179I		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTAGGAAAATCCTGAGTTTTT	0.522													40	59					0	0	0.00285205	0	0
OR2T3	343173	broad.mit.edu	37	1	248637223	248637223	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:248637223A>C	uc001iel.1	+	1	572	c.572A>C	c.(571-573)AAG>ACG	p.K191T		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCCCTGCTGAAGCTCTCCTGC	0.512													5	152					0	0	0.00116845	0	0
RSU1	6251	broad.mit.edu	37	10	16794967	16794967	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:16794967C>T	uc001iok.2	-	5	735	c.433G>A	c.(433-435)GAT>AAT	p.D145N	RSU1_uc001iol.2_Missense_Mutation_p.D145N|RSU1_uc001iom.2_Missense_Mutation_p.D92N|RSU1_uc001ion.2_Missense_Mutation_p.D145N	NM_152724	NP_689937	Q15404	RSU1_HUMAN	ras suppressor protein 1 isoform 2	145	LRR 5.				cell junction assembly|signal transduction	cytosol	protein binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(1;7.54e-08)		ATTTCAAAATCGTTGTCACTT	0.398													20	12					0	0	0.00278032	0	0
CCDC7	221016	broad.mit.edu	37	10	32856725	32856725	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:32856725C>T	uc001iwj.2	+	16	1895	c.1325C>T	c.(1324-1326)TCA>TTA	p.S442L	CCDC7_uc001iwk.2_Missense_Mutation_p.S442L|CCDC7_uc009xlv.2_RNA|C10orf68_uc001iwl.1_5'UTR|C10orf68_uc001iwm.1_5'UTR|C10orf68_uc001iwn.3_5'UTR	NM_145023	NP_659460	Q96M83	CCDC7_HUMAN	coiled-coil domain containing 7	442											0		Breast(68;0.000207)|Prostate(175;0.0107)				GGTGAAGATTCAAAAAATATA	0.348													25	15					0	0	0.000586117	0	0
RET	5979	broad.mit.edu	37	10	43606833	43606833	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:43606833T>G	uc001jal.2	+	7	1632	c.1442T>G	c.(1441-1443)CTT>CGT	p.L481R	RET_uc001jak.1_Missense_Mutation_p.L481R|RET_uc010qez.1_Missense_Mutation_p.L227R	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	481	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	TGTGCCGAACTTCACTACATG	0.622		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				4	20					0	0	0.00024832	0	0
ZNF488	118738	broad.mit.edu	37	10	48371431	48371431	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:48371431A>T	uc001jex.2	+	2	1061	c.899A>T	c.(898-900)AAG>ATG	p.K300M	ZNF488_uc001jey.2_Missense_Mutation_p.K193M	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	300	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACCACAAAAAGGAGCATGCG	0.602													25	14					0	0	0.00106085	0	0
DRGX	644168	broad.mit.edu	37	10	50594844	50594844	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:50594844C>T	uc010qgq.1	-	4	310	c.310G>A	c.(310-312)GAG>AAG	p.E104K		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	104					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCTCCTGGCTCCTGGTCTGAG	0.562													43	32					0	0	0.000781405	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940176	68940176	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:68940176C>T	uc009xpn.1	-	7	1069	c.946G>A	c.(946-948)GAT>AAT	p.D316N	CTNNA3_uc001jmw.2_Missense_Mutation_p.D316N|CTNNA3_uc001jmx.3_Missense_Mutation_p.D316N|CTNNA3_uc009xpo.1_Missense_Mutation_p.D176N|CTNNA3_uc001jna.2_Missense_Mutation_p.D328N	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	316					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CATGAAGAATCCGCCAGCAGA	0.483													27	16					0	0	0.000878237	0	0
NRAP	4892	broad.mit.edu	37	10	115400007	115400007	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:115400007C>T	uc001laj.2	-	14	1571	c.1407G>A	c.(1405-1407)ATG>ATA	p.M469I	NRAP_uc001lak.2_Missense_Mutation_p.M434I|NRAP_uc001lal.3_Missense_Mutation_p.M469I	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	469						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GCACCAGTTTCATAGCTGTTT	0.418													42	23					0	0	0.000680045	0	0
GFRA1	2674	broad.mit.edu	37	10	118029037	118029037	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr10:118029037G>A	uc001lcj.2	-	4	1094	c.396C>T	c.(394-396)TTC>TTT	p.F132F	GFRA1_uc001lci.2_Silent_p.F132F|GFRA1_uc009xyr.2_Silent_p.F132F	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	132					axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		GGACCACCCGGAATATATCTG	0.418													14	9					0	0	0.000422831	0	0
PKP3	11187	broad.mit.edu	37	11	396967	396968	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:396967_396968CC>TT	uc001lpc.2	+	3	542_543	c.466_467CC>TT	c.(466-468)CCC>TTC	p.P156F		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	156					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCCACCCCTCCCATGCCCACC	0.718													4	11					0	0	6.4e-05	0	0
MUC5B	727897	broad.mit.edu	37	11	1162342	1162342	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:1162342C>T	uc009ycr.1	+	16	1977	c.1851C>T	c.(1849-1851)TGC>TGT	p.C617C		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	608	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGGACCCCTGCTCTCTGAGCG	0.652													6	15					0	0	0.00116845	0	0
MUC5B	727897	broad.mit.edu	37	11	1252739	1252739	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:1252739C>T	uc009ycr.1	+	30	3730	c.3604C>T	c.(3604-3606)CTC>TTC	p.L1202F	MUC5B_uc009yct.1_Missense_Mutation_p.L543F|MUC5B_uc001ltb.2_Missense_Mutation_p.L546F|MUC5B_uc001lta.2_Missense_Mutation_p.L211F	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	543	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCTGGTGCCACTCATGCAGGT	0.667													3	5					0	0	6.4e-05	0	0
LSP1	4046	broad.mit.edu	37	11	1874417	1874417	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:1874417G>A	uc001lui.2	+	1	218	c.43G>A	c.(43-45)GAG>AAG	p.E15K		NM_002339	NP_002330	P33241	LSP1_HUMAN	lymphocyte-specific protein 1 isoform 1	15				Missing (in Ref. 3; AAB29545).	cellular component movement|cellular defense response	actin cytoskeleton|Golgi apparatus|plasma membrane	actin binding|signal transducer activity			large_intestine(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|Lung(200;0.0729)|LUSC - Lung squamous cell carcinoma(625;0.0856)		GGAGCGGGAAGAGTTGCTGGG	0.667													8	10					0	0	0.000274275	0	0
ART5	116969	broad.mit.edu	37	11	3661430	3661430	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:3661430C>T	uc001lyb.1	-	2	622	c.229G>A	c.(229-231)GAC>AAC	p.D77N	ART5_uc001lyc.1_Missense_Mutation_p.D77N|ART5_uc001lyd.2_Missense_Mutation_p.D77N|ART5_uc009yea.2_Missense_Mutation_p.D77N	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	77						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		CGACGCTTGTCCTCCCAGGTC	0.577													18	19					0	0	0.00121646	0	0
OR51G2	81282	broad.mit.edu	37	11	4936071	4936071	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:4936071G>A	uc001lzr.1	-	1	823	c.823C>T	c.(823-825)CAC>TAC	p.H275Y		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGACCAGGTGGGGTGCCTGC	0.512													26	38					0	0	0.000878237	0	0
OR51G2	81282	broad.mit.edu	37	11	4936151	4936151	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:4936151G>A	uc001lzr.1	-	1	743	c.743C>T	c.(742-744)TCC>TTC	p.S248F		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGATGTGGGAAACACAGGT	0.552													31	49					0	0	0.00283554	0	0
OR51B5	282763	broad.mit.edu	37	11	5364484	5364484	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:5364484C>T	uc001map.1	-	1	271	c.271G>A	c.(271-273)GGA>AGA	p.G91R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.G91R	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCGCACTTCCAATCTCCCTG	0.552													17	21					0	0	0.000422831	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529171	5529171	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:5529171G>A	uc001may.1	-	2	1704	c.1618C>T	c.(1618-1620)CGC>TGC	p.R540C	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	540										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGTAGGAGGCGAGGTGCTTCA	0.577													12	26					0	0	0.00136819	0	0
TRIM22	10346	broad.mit.edu	37	11	5719671	5719671	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:5719671C>T	uc001mbr.2	+	4	923	c.646C>T	c.(646-648)CTG>TTG	p.L216L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Silent_p.L184L|TRIM22_uc009yes.2_Silent_p.L212L|TRIM22_uc010qzm.1_Silent_p.L44L|TRIM22_uc009yeu.2_Silent_p.L27L	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	216	Potential.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		GCTGGATAACCTGGCAGCAGC	0.527													18	29					0	0	0.000566183	0	0
OR56A5	390084	broad.mit.edu	37	11	5989438	5989438	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:5989438C>T	uc010qzu.1	-	1	287	c.287G>A	c.(286-288)AGC>AAC	p.S96N		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	96	Extracellular (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GGCAGGGAAGCTGATTGATCT	0.522													14	14					0	0	0.000422831	0	0
OR6A2	8590	broad.mit.edu	37	11	6816325	6816325	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:6816325G>A	uc001mes.1	-	1	815	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGGCCAGGATGAAATCTGTAA	0.493													42	92					0	0	0.000680045	0	0
OR10A4	283297	broad.mit.edu	37	11	6898405	6898405	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:6898405A>G	uc010rat.1	+	1	527	c.527A>G	c.(526-528)AAC>AGC	p.N176S		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AACAGGGTGAACCACTTCTTC	0.522													24	50					0	0	0.000878237	0	0
OLFML1	283298	broad.mit.edu	37	11	7530732	7530733	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:7530732_7530733GG>AA	uc001mfi.2	+	3	874_875	c.522_523GG>AA	c.(520-525)AAGGTG>AAAATG	p.V175M	OLFML1_uc010raz.1_Missense_Mutation_p.V39M|OLFML1_uc010rba.1_Missense_Mutation_p.V175M	NM_198474	NP_940876	Q6UWY5	OLFL1_HUMAN	olfactomedin-like 1 precursor	175	Olfactomedin-like.					extracellular region				ovary(2)	2				Epithelial(150;6.96e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		ACTCTCCAAAGGTGTACTTATT	0.421													26	56					0	0	6.4e-05	0	0
NLRP10	338322	broad.mit.edu	37	11	7984936	7984936	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:7984936G>A	uc001mfv.1	-	1	124	c.107C>T	c.(106-108)ACC>ATC	p.T36I		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	36	DAPIN.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTCAGACAGGGTCATATCCCG	0.537													21	38					0	0	0.00278032	0	0
C11orf16	56673	broad.mit.edu	37	11	8942945	8942945	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:8942945G>A	uc001mhb.3	-	6	1446	c.1322C>T	c.(1321-1323)CCG>CTG	p.P441L	C11orf16_uc001mhc.3_Intron	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	441										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		CGGGGTCCGCGGTGGCTTCAT	0.517													28	43					0	0	0.001512	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195625	18195625	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:18195625C>T	uc001mnv.1	+	1	1242	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	274	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TTTACTTCTTCGTGGGCTCCT	0.488													33	52					0	0	0.000814825	0	0
LDHC	3948	broad.mit.edu	37	11	18460142	18460142	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:18460142G>A	uc001mon.3	+	6	772	c.660G>A	c.(658-660)ACG>ACA	p.T220T	LDHC_uc001mom.3_Silent_p.T220T|LDHC_uc009yhp.2_Silent_p.T220T|LDHC_uc001moo.3_Silent_p.T104T|LDHC_uc009yhq.2_RNA|LDHC_uc009yhr.2_Intron	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	220					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	AATTAGGAACGGATTCAGATA	0.358													11	26					0	0	0.000673444	0	0
SLC17A6	57084	broad.mit.edu	37	11	22382522	22382522	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:22382522C>T	uc001mqk.2	+	5	1066	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	218	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						GCAACCACCTCCTTTTGTGGT	0.418													12	11					0	0	0.000978159	0	0
LUZP2	338645	broad.mit.edu	37	11	24936070	24936070	+	Missense_Mutation	SNP	G	A	A	rs138759346	by1000genomes	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:24936070G>A	uc001mqs.2	+	7	742	c.508G>A	c.(508-510)GAT>AAT	p.D170N	LUZP2_uc009yif.2_Missense_Mutation_p.D84N|LUZP2_uc009yig.2_Intron	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	170	Potential.|Leucine-zipper.					extracellular region				ovary(1)|skin(1)	2						TGGGAAGAAGGATTTATTATT	0.313													8	27					0	0	0.000978159	0	0
LIN7C	55327	broad.mit.edu	37	11	27528327	27528327	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:27528327G>A	uc001mrl.2	-	1	1	c.-26_splice	c.e1-1		LIN7C_uc009yii.2_Splice_Site|BDNFOS_uc001mrm.2_5'Flank|BDNFOS_uc009yij.2_5'Flank|BDNFOS_uc009yik.2_5'Flank|BDNFOS_uc009yil.2_5'Flank|BDNFOS_uc001mrp.2_5'Flank|BDNFOS_uc009yim.2_5'Flank|BDNFOS_uc009yin.2_5'Flank|BDNFOS_uc009yio.2_5'Flank|BDNFOS_uc009yip.2_5'Flank|BDNFOS_uc001mrn.2_5'Flank|BDNFOS_uc009yiq.2_5'Flank|BDNFOS_uc001mro.2_5'Flank|BDNFOS_uc009yir.2_5'Flank|BDNFOS_uc009yis.2_5'Flank|BDNFOS_uc009yit.2_5'Flank|BDNFOS_uc009yiu.2_5'Flank|BDNFOS_uc009yiv.2_5'Flank|BDNFOS_uc009yiw.2_5'Flank|BDNFOS_uc009yix.2_5'Flank|BDNFOS_uc009yiy.2_5'Flank|BDNFOS_uc009yiz.2_5'Flank|BDNFOS_uc001mrq.3_5'Flank|BDNFOS_uc001mrr.3_5'Flank|BDNFOS_uc009yja.2_5'Flank|BDNFOS_uc009yjb.2_5'Flank	NM_018362	NP_060832	Q9NUP9	LIN7C_HUMAN	lin-7 homolog C						exocytosis|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction					0						AGACCCACAGGAAATGACGAC	0.637													12	32					0	0	0.00136819	0	0
TTC17	55761	broad.mit.edu	37	11	43469611	43469611	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:43469611C>T	uc001mxi.2	+	19	2739	c.2725C>T	c.(2725-2727)CGC>TGC	p.R909C	TTC17_uc010rfj.1_Missense_Mutation_p.R909C|TTC17_uc001mxl.2_5'Flank	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	909							binding			ovary(5)	5						CCTCAAACTCCGCTGGGTAGA	0.483													20	25					0	0	0.000958276	0	0
OR4A47	403253	broad.mit.edu	37	11	48510399	48510399	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:48510399C>T	uc010rhx.1	+	1	55	c.55C>T	c.(55-57)CCA>TCA	p.P19S		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CACACAGAATCCAAAGGAGCA	0.418													10	23					0	0	0.000978159	0	0
OR5L1	219437	broad.mit.edu	37	11	55579818	55579818	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:55579818G>A	uc001nhw.1	+	1	876	c.876G>A	c.(874-876)CTG>CTA	p.L292L		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TCTACAGCCTGAGAAATAAAG	0.443													18	20					0	0	0.00152264	0	0
OR5F1	338674	broad.mit.edu	37	11	55761613	55761613	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:55761613G>A	uc010riv.1	-	1	489	c.489C>T	c.(487-489)GTC>GTT	p.V163V		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					ACAAGCTGCTGACATGGCTTG	0.473													34	49					0	0	0.000692331	0	0
DAGLA	747	broad.mit.edu	37	11	61504776	61504776	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:61504776C>T	uc001nsa.2	+	14	1605	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	498	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		TTGCCTACTCCCCGCCAGGGG	0.657													70	105					0	0	0.000781405	0	0
DAGLA	747	broad.mit.edu	37	11	61511889	61511889	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:61511889C>T	uc001nsa.2	+	20	3168	c.3057C>T	c.(3055-3057)ATC>ATT	p.I1019I		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	1019	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CTGACAAGATCCGGACTTCTA	0.662													17	22					0	0	0.00074312	0	0
PYGM	5837	broad.mit.edu	37	11	64525338	64525338	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:64525338C>T	uc001oax.3	-	5	1390	c.573G>A	c.(571-573)GAG>GAA	p.E191E	PYGM_uc001oay.3_Silent_p.E103E	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	191					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	GCCGGGCCTTCTCCCAGGGGT	0.612													12	33					0	0	0.000308642	0	0
SUV420H1	51111	broad.mit.edu	37	11	67925386	67925386	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:67925386C>T	uc001onm.1	-	11	2683	c.2427G>A	c.(2425-2427)TTG>TTA	p.L809L	SUV420H1_uc009yse.1_Silent_p.L395L|SUV420H1_uc001onn.1_Silent_p.L637L|SUV420H1_uc009ysf.2_Silent_p.L569L	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	809					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						TTCGAGACTCCAAGAGAGAAA	0.443													66	118					0	0	0.000781405	0	0
DHCR7	1717	broad.mit.edu	37	11	71146507	71146507	+	Missense_Mutation	SNP	C	T	T	rs80338864		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:71146507C>T	uc001oqk.2	-	9	1592	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	DHCR7_uc001oql.2_Missense_Mutation_p.E448K	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	448			E -> Q (in SLOS).|E -> K (in SLOS; mild).		cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	CAGCGGTGCTCGTCCCGGAGG	0.667									Smith-Lemli-Opitz_syndrome				21	20					0	0	0.00152264	0	0
ARAP1	116985	broad.mit.edu	37	11	72422542	72422542	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:72422542G>A	uc001osu.2	-	8	1214	c.1025C>T	c.(1024-1026)TCT>TTT	p.S342F	ARAP1_uc001osv.2_Missense_Mutation_p.S342F|ARAP1_uc001osr.2_Missense_Mutation_p.S102F|ARAP1_uc001oss.2_Missense_Mutation_p.S97F|ARAP1_uc009yth.2_Missense_Mutation_p.S97F|ARAP1_uc010rre.1_Missense_Mutation_p.S97F	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	342	PH 1.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						ATAGATGTAAGATCTGGAGAG	0.542													72	134					0	0	0.000781405	0	0
PGM2L1	283209	broad.mit.edu	37	11	74085522	74085522	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:74085522G>A	uc001ovb.1	-	2	513	c.217C>T	c.(217-219)CGT>TGT	p.R73C		NM_173582	NP_775853	Q6PCE3	PGM2L_HUMAN	phosphoglucomutase 2-like 1	73					glucose 1-phosphate metabolic process	cytosol	glucose-1,6-bisphosphate synthase activity|phosphoglucomutase activity			ovary(1)	1	Breast(11;3.32e-06)					ATGGCAGAACGAAGTCCTGCA	0.398													15	19					0	0	0.000422831	0	0
KCTD14	65987	broad.mit.edu	37	11	77728170	77728170	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:77728170G>A	uc001oyw.3	-	2	262	c.237C>T	c.(235-237)ATC>ATT	p.I79I		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	79	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			TGGGGCGGTCGATGAAGAAGC	0.597													8	32					0	0	0.000157383	0	0
KCTD21	283219	broad.mit.edu	37	11	77885399	77885399	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:77885399G>A	uc001ozb.2	-	2	277	c.202C>T	c.(202-204)CTT>TTT	p.L68F		NM_001029859	NP_001025030	Q4G0X4	KCD21_HUMAN	potassium channel tetramerisation domain	68	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.46e-24)			GGCAGGTCAAGGTGGGAGGTC	0.602													13	24					0	0	0.00136819	0	0
ODZ4	26011	broad.mit.edu	37	11	78423616	78423616	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:78423616G>A	uc001ozl.3	-	26	4428	c.3965C>T	c.(3964-3966)GCG>GTG	p.A1322V		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1322	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ACCTGTCCCCGCAACCACCTC	0.577													45	64					0	0	0.000781405	0	0
NAALAD2	10003	broad.mit.edu	37	11	89868809	89868809	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:89868809G>A	uc001pdf.3	+	2	274	c.165G>A	c.(163-165)ATG>ATA	p.M55I	NAALAD2_uc009yvx.2_Missense_Mutation_p.M55I|NAALAD2_uc009yvy.2_Missense_Mutation_p.M55I|NAALAD2_uc001pdd.2_Missense_Mutation_p.M55I|NAALAD2_uc001pde.2_Missense_Mutation_p.M55I	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	55	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TATCCGAAATGAAAGCTGAAA	0.328													31	47					0	0	0.000692331	0	0
CNTN5	53942	broad.mit.edu	37	11	100141954	100141954	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:100141954G>A	uc001pga.2	+	18	2634	c.2295G>A	c.(2293-2295)ATG>ATA	p.M765I	CNTN5_uc001pfz.2_Missense_Mutation_p.M765I|CNTN5_uc001pgb.2_Missense_Mutation_p.M691I|CNTN5_uc010ruk.1_Missense_Mutation_p.M36I	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	765	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CATCTCGAATGATCCGCACAA	0.453													10	10					0	0	0.000673444	0	0
CASP5	838	broad.mit.edu	37	11	104877831	104877831	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:104877831G>A	uc010rva.1	-	3	444	c.412C>T	c.(412-414)CAA>TAA	p.Q138*	CASP5_uc010ruz.1_Nonsense_Mutation_p.Q151*|CASP5_uc010rvb.1_Nonsense_Mutation_p.Q80*|CASP5_uc010rvc.1_Intron|CASP5_uc009yxh.2_5'UTR|CASP5_uc010rvd.1_Intron	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	138	CARD.				apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		GTGATCTTTTGGTCCATATTG	0.388													51	36					0	0	0.000781405	0	0
RDX	5962	broad.mit.edu	37	11	110134695	110134696	+	Silent	DNP	GG	AA	AA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:110134695_110134696GG>AA	uc001pku.2	-	5	766_767	c.456_457CC>TT	c.(454-459)CTCCTA>CTTTTA	p.152_153LL>LL	RDX_uc009yxx.1_RNA|RDX_uc009yxy.2_Silent_p.152_153LL>LL|RDX_uc009yxz.2_Intron|RDX_uc009yya.2_Silent_p.120_121LL>LL|RDX_uc010rwe.1_Intron	NM_002906	NP_002897	P35241	RADI_HUMAN	radixin	152_153	FERM.				actin filament capping	cleavage furrow|cytoskeleton|extrinsic to membrane|Golgi apparatus|nucleolus|plasma membrane	actin binding				0		all_cancers(61;7.18e-13)|all_epithelial(67;2.61e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.13e-06)|BRCA - Breast invasive adenocarcinoma(274;9.75e-06)|all cancers(92;5.9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0248)		CGCTGGGGTAGGAGTCTATCAT	0.361													16	13					0	0	6.4e-05	0	0
UBE4A	9354	broad.mit.edu	37	11	118255590	118255590	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:118255590C>T	uc001psw.2	+	15	2471	c.2342C>T	c.(2341-2343)CCC>CTC	p.P781L	UBE4A_uc001psv.2_Missense_Mutation_p.P788L	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	781					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		GCCATGAATCCCCCACTTTTC	0.368													64	36					0	0	0.000781405	0	0
UBASH3B	84959	broad.mit.edu	37	11	122647762	122647762	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:122647762G>A	uc001pyi.3	+	3	606	c.246G>A	c.(244-246)CTG>CTA	p.L82L		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	82						cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		ACCCCTTCCTGGATGACCCCC	0.547													15	10					0	0	0.000958276	0	0
OR4D5	219875	broad.mit.edu	37	11	123810407	123810407	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:123810407C>T	uc001pzk.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TTGTTTTCTTCACTGTTTTCT	0.453													44	18					0	0	0.0025221	0	0
OR10G9	219870	broad.mit.edu	37	11	123894512	123894512	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:123894512G>A	uc010sad.1	+	1	793	c.793G>A	c.(793-795)GAC>AAC	p.D265N		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		AGGCTCCAGGGACGTCGTGGA	0.522													34	19					0	0	0.000692331	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128838851	128838851	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr11:128838851G>A	uc009zcp.2	-	22	6215	c.6215C>T	c.(6214-6216)CCC>CTC	p.P2072L	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.P1031L|ARHGAP32_uc001qez.2_Missense_Mutation_p.P1723L	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	2072	Interaction with FYN.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CAACTCTGCGGGCAGGAAGGC	0.582													7	6					0	0	0.000274275	0	0
WNK1	65125	broad.mit.edu	37	12	971408	971408	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:971408C>T	uc001qio.3	+	8	2618	c.2111C>T	c.(2110-2112)CCC>CTC	p.P704L	WNK1_uc001qip.3_Missense_Mutation_p.P704L|WNK1_uc001qir.3_Missense_Mutation_p.P151L	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	704					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAGTCTCAGCCCCATGGGGTA	0.433													22	32					0	0	0.000720815	0	0
NTF3	4908	broad.mit.edu	37	12	5603428	5603428	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:5603428C>T	uc001qnl.3	+	1	131	c.48C>T	c.(46-48)ATC>ATT	p.I16I	NTF3_uc001qnk.3_Silent_p.I29I	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	16					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						TCCGTGGCATCCAAGGTAACA	0.418													18	49					0	0	0.000958276	0	0
ANO2	57101	broad.mit.edu	37	12	6030386	6030386	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:6030386G>A	uc001qnm.2	-	3	414	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	118	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AGTGGCCAGGGAAGCCTTGGG	0.617													9	23					0	0	0.000442599	0	0
DPPA3	359787	broad.mit.edu	37	12	7868018	7868018	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:7868018C>T	uc001qtf.2	+	2	400	c.322C>T	c.(322-324)CGT>TGT	p.R108C		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	108						cytoplasm|nucleus					0				Kidney(36;0.0887)		CGGCGGAGTTCGTACGGTATG	0.443													12	39					0	0	0.00136819	0	0
ETV6	2120	broad.mit.edu	37	12	12022505	12022505	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:12022505C>T	uc001qzz.2	+	5	885	c.611C>T	c.(610-612)CCC>CTC	p.P204L	ETV6_uc001raa.1_5'UTR	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	204						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				CTCCGGTCCCCCCTGGACAAC	0.632			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								40	70					0	0	0.0025221	0	0
GSG1	83445	broad.mit.edu	37	12	13240852	13240852	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:13240852G>A	uc001rbn.2	-	5	796	c.623C>T	c.(622-624)TCT>TTT	p.S208F	GSG1_uc001rbj.2_Missense_Mutation_p.S172F|GSG1_uc001rbk.2_Silent_p.L213L|GSG1_uc001rbl.2_Intron|GSG1_uc001rbm.2_Intron|GSG1_uc001rbo.2_Silent_p.L249L|GSG1_uc001rbp.2_Missense_Mutation_p.S185F|GSG1_uc001rbq.1_Silent_p.L249L	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	195	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		TGACAGGACAGAGGAAACAGC	0.557													10	24					0	0	0.000442599	0	0
C12orf36	283422	broad.mit.edu	37	12	13529288	13529288	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:13529288G>A	uc001rbs.1	-	2	270	c.52C>T	c.(52-54)CCT>TCT	p.P18S		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		taaaaggcagggtgggaacag	0.04													5	10					0	0	0.000602214	0	0
MGP	4256	broad.mit.edu	37	12	15035095	15035095	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:15035095C>T	uc001rcn.1	-	4	393	c.290G>A	c.(289-291)AGG>AAG	p.R97K		NM_000900	NP_000891	P08493	MGP_HUMAN	matrix Gla protein precursor	97	Gla.				cartilage condensation|cell differentiation|ossification|regulation of bone mineralization	proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent|structural constituent of bone			ovary(1)	1						TCGGCGCTTCCTGAAGTAGCG	0.478													71	88					0	0	0.000781405	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20896269	20896269	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:20896269C>T	uc001rej.3	+	14	2119	c.1764C>T	c.(1762-1764)GCC>GCT	p.A588A	SLCO1C1_uc010sii.1_Silent_p.A588A|SLCO1C1_uc010sij.1_Silent_p.A539A|SLCO1C1_uc009zip.2_Silent_p.A422A|SLCO1C1_uc001rei.2_Silent_p.A588A|SLCO1C1_uc010sik.1_Silent_p.A470A	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	588	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					AGTCTTTTGCCTTGGGTATCT	0.308													70	141					0	0	0.000781405	0	0
CASC1	55259	broad.mit.edu	37	12	25311484	25311484	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:25311484C>T	uc001rgl.2	-	3	184	c.102G>A	c.(100-102)TTG>TTA	p.L34L	CASC1_uc001rgk.2_Silent_p.L40L|CASC1_uc001rgm.3_Silent_p.L98L|CASC1_uc001rgj.2_5'UTR|CASC1_uc010sje.1_Intron|CASC1_uc010sjf.1_Intron|CASC1_uc010sjg.1_Silent_p.L34L|CASC1_uc010sjh.1_RNA	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	34	Glu-rich.									ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TCTCATATTTCAAACGGGCTT	0.294													32	48					0	0	0.00209593	0	0
PKP2	5318	broad.mit.edu	37	12	32996156	32996156	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:32996156C>T	uc001rlj.3	-	6	1585	c.1470G>A	c.(1468-1470)CGG>CGA	p.R490R	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	490					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					acctcgtgatccgcccgcctt	0.075													10	14					0	0	0.000442599	0	0
SYT10	341359	broad.mit.edu	37	12	33559882	33559882	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:33559882C>T	uc001rll.1	-	3	1216	c.919G>A	c.(919-921)GAT>AAT	p.D307N	SYT10_uc009zju.1_Missense_Mutation_p.D117N	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	307	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTTAGTTGATCATATGCTACA	0.343													23	36					0	0	0.00229938	0	0
ABCD2	225	broad.mit.edu	37	12	39980071	39980071	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:39980071C>T	uc001rmb.2	-	7	2101	c.1675G>A	c.(1675-1677)GAT>AAT	p.D559N		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	559	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						ATGACTTGATCCCGAAGACTT	0.398													31	14					0	0	0.0024448	0	0
PPHLN1	51535	broad.mit.edu	37	12	42839994	42839994	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:42839994C>T	uc001rng.1	+	12	1357	c.1252C>T	c.(1252-1254)CAG>TAG	p.Q418*	PPHLN1_uc010skr.1_3'UTR|PPHLN1_uc010sks.1_Nonsense_Mutation_p.Q369*|PPHLN1_uc010skt.1_Nonsense_Mutation_p.Q323*|PPHLN1_uc001rni.1_Nonsense_Mutation_p.Q394*|PPHLN1_uc001rnh.1_RNA|PPHLN1_uc010sku.1_Intron	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1	418					keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		gaagacaactcaggaggctga	0													4	5					0	0	0.00024832	0	0
ANO6	196527	broad.mit.edu	37	12	45797003	45797004	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:45797003_45797004GG>TT	uc001roo.2	+	14	2096_2097	c.1761_1762GG>TT	c.(1759-1764)TTGGGA>TTTTGA	p.587_588LG>F*	ANO6_uc010sld.1_Nonsense_Mutation_p.587_588LG>F*|ANO6_uc010sle.1_Nonsense_Mutation_p.587_588LG>F*|ANO6_uc010slf.1_Nonsense_Mutation_p.608_609LG>F*|ANO6_uc010slg.1_Nonsense_Mutation_p.569_570LG>F*	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	587_588	Extracellular (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						TTTATTGGTTGGGAAAATACAG	0.342													6	71					0	0	6.4e-05	0	0
FAM113B	91523	broad.mit.edu	37	12	47629854	47629855	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:47629854_47629855TC>AT	uc001rpn.2	+	4	1739_1740	c.1008_1009TC>AT	c.(1006-1011)GGTCCC>GGATCC	p.P337S	FAM113B_uc001rpq.2_Missense_Mutation_p.P337S	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	337	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					TCCCACAGGGTCCCCCAGATGC	0.361													28	312					0	0	6.4e-05	0	0
KRT71	112802	broad.mit.edu	37	12	52946563	52946563	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:52946563C>T	uc001sao.2	-	1	369	c.299G>A	c.(298-300)GGA>GAA	p.G100E		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	100	Head.|Gly-rich.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		GTGGATGCCTCCAGGTGGGCA	0.637													20	14					0	0	0.00121646	0	0
GPR84	53831	broad.mit.edu	37	12	54757305	54757305	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:54757305G>A	uc001sfu.2	-	2	421	c.331C>T	c.(331-333)CTC>TTC	p.L111F		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	111	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						ATGAGGCAGAGGGTCAGGATG	0.572													10	6					0	0	0.00136819	0	0
OR6C1	390321	broad.mit.edu	37	12	55715045	55715045	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:55715045G>A	uc010spi.1	+	1	662	c.662G>A	c.(661-663)AGA>AAA	p.R221K		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TACATTATCAGAACAATTTTG	0.383													28	15					0	0	0.00106085	0	0
BEST3	144453	broad.mit.edu	37	12	70049039	70049039	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:70049039G>A	uc001svg.2	-	10	1882	c.1655C>T	c.(1654-1656)CCC>CTC	p.P552L	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.P339L|BEST3_uc010stm.1_Missense_Mutation_p.P446L	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	552	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CTTCTCTGAGGGAGACAGGAT	0.547													33	100					0	0	0.00283554	0	0
BEST3	144453	broad.mit.edu	37	12	70087528	70087528	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:70087528G>A	uc001svg.2	-	4	634	c.407C>T	c.(406-408)TCC>TTC	p.S136F	BEST3_uc001svd.1_Missense_Mutation_p.S136F|BEST3_uc001sve.1_RNA|BEST3_uc010stm.1_Missense_Mutation_p.S30F|BEST3_uc001svh.2_5'UTR|BEST3_uc001svi.1_RNA	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	136	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GATGAGCAGGGAGGTGAGATT	0.522													55	35					0	0	0.000781405	0	0
PTPRB	5787	broad.mit.edu	37	12	70990070	70990070	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:70990070C>T	uc001swb.3	-	3	393	c.363G>A	c.(361-363)GAG>GAA	p.E121E	PTPRB_uc010sto.1_Silent_p.E121E|PTPRB_uc010stp.1_Silent_p.E121E|PTPRB_uc001swc.3_Silent_p.E339E|PTPRB_uc001swa.3_Silent_p.E339E|PTPRB_uc001swd.3_Silent_p.E338E|PTPRB_uc009zrr.1_Silent_p.E218E|PTPRB_uc001swe.2_Silent_p.E339E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	121	Fibronectin type-III 2.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AAGTCGTCTTCTCTTTACTGA	0.353													30	14					0	0	0.00106085	0	0
NAV3	89795	broad.mit.edu	37	12	78400287	78400287	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:78400287C>T	uc001syp.2	+	8	1142	c.969C>T	c.(967-969)ATC>ATT	p.I323I	NAV3_uc001syo.2_Silent_p.I323I	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	323						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CCTCTGCCATCCCTTCTCCAA	0.532										HNSCC(70;0.22)			33	21					0	0	0.0024448	0	0
NAV3	89795	broad.mit.edu	37	12	78593243	78593243	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:78593243G>A	uc001syp.2	+	37	6820	c.6647G>A	c.(6646-6648)TGG>TAG	p.W2216*	NAV3_uc001syo.2_Nonsense_Mutation_p.W2194*|NAV3_uc010sub.1_Nonsense_Mutation_p.W1673*|NAV3_uc009zsf.2_Nonsense_Mutation_p.W1025*	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2216						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ATTATAGATTGGATTCCGAAG	0.363										HNSCC(70;0.22)			37	23					0	0	0.00148497	0	0
STAB2	55576	broad.mit.edu	37	12	104109615	104109615	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:104109615C>T	uc001tjw.2	+	43	4746	c.4560C>T	c.(4558-4560)AAC>AAT	p.N1520N	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1520	Extracellular (Potential).|EGF-like 13.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTTTGGAGAACCATGGTGGCT	0.502													29	19					0	0	0.00209593	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686458	108686458	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:108686458G>A	uc009zuw.2	-	3	473	c.282C>T	c.(280-282)ATC>ATT	p.I94I	CMKLR1_uc001tmw.2_Silent_p.I94I|CMKLR1_uc001tmv.2_Silent_p.I92I|CMKLR1_uc009zuv.2_Silent_p.I94I	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	94	Helical; Name=2; (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						AGGTGATATGGATTGGGAGGA	0.493													30	15					0	0	0.00058488	0	0
TMEM119	338773	broad.mit.edu	37	12	108985890	108985890	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:108985890G>A	uc001tng.2	-	2	433	c.270C>T	c.(268-270)TTC>TTT	p.F90F	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	90	Extracellular (Potential).					integral to membrane				ovary(1)	1						ACTGGCGGAAGAAGTCCACTA	0.632													10	11					0	0	0.00185496	0	0
ALDH2	217	broad.mit.edu	37	12	112219760	112219760	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:112219760G>A	uc001tst.2	+	2	594	c.153G>A	c.(151-153)AGG>AGA	p.R51R	ALDH2_uc010syi.1_Silent_p.R51R|ALDH2_uc009zvy.2_Silent_p.R51R	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	51					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity	p.R51K(1)		skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	CCGTCAGCAGGAAAACATTCC	0.483			T	HMGA2	leiomyoma								37	15					0	0	0.00222228	0	0
CCDC60	160777	broad.mit.edu	37	12	119961610	119961610	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:119961610G>A	uc001txe.2	+	11	1681	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	406										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGACAAGATGGAAATCCTCAT	0.318													26	8					0	0	0.000720815	0	0
GCN1L1	10985	broad.mit.edu	37	12	120578761	120578761	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:120578761G>A	uc001txo.2	-	45	5909	c.5896C>T	c.(5896-5898)CCC>TCC	p.P1966S		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1966	HEAT 16.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCAAGGATGGGGATGATCTCG	0.532													78	22					0	0	0.000781405	0	0
ACADS	35	broad.mit.edu	37	12	121176354	121176354	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:121176354C>T	uc001tza.3	+	7	932	c.814C>T	c.(814-816)CGC>TGC	p.R272C	ACADS_uc010szl.1_Missense_Mutation_p.R268C|ACADS_uc001tzb.3_Intron	NM_000017	NP_000008	P16219	ACADS_HUMAN	short-chain acyl-CoA dehydrogenase precursor	272	Substrate binding.					mitochondrial matrix	butyryl-CoA dehydrogenase activity			central_nervous_system(2)	2	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)	Lung NSC(355;0.163)			NADH(DB00157)	GGACATGGGCCGCATCGGCAT	0.706													94	35					0	0	0.000781405	0	0
KNTC1	9735	broad.mit.edu	37	12	123089491	123089491	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:123089491C>G	uc001ucv.2	+	50	5406	c.5243C>G	c.(5242-5244)ACA>AGA	p.T1748R	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1748					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		CGATCGGGCACAGAAGCTGTG	0.433													8	3					0	0	0.000157383	0	0
HIP1R	9026	broad.mit.edu	37	12	123334490	123334490	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:123334490C>T	uc001udj.1	+	5	485	c.426C>T	c.(424-426)TCC>TCT	p.S142S	HIP1R_uc001udg.1_Silent_p.S130S|HIP1R_uc001udi.1_Silent_p.S142S|HIP1R_uc001udh.2_Silent_p.S142S	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	142	ENTH.				receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		CCAAGATCTCCTTCCACCTCA	0.577													23	9					0	0	0.000878237	0	0
DNAH10	196385	broad.mit.edu	37	12	124268667	124268667	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:124268667C>T	uc001uft.3	+	8	1015	c.990C>T	c.(988-990)TTC>TTT	p.F330F		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	330	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TATTCAAGTTCCACACGGAGG	0.488													72	25					0	0	0.000781405	0	0
TMEM132C	92293	broad.mit.edu	37	12	128899729	128899729	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:128899729G>A	uc001uhs.3	+	1	439	c.202G>A	c.(202-204)GAG>AAG	p.E68K		NM_001136103	NP_001129575	Q8N3T6	T132C_HUMAN	transmembrane protein 132C	180	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						AGAAACCAGAGAGGTGCGGGG	0.642													5	2					0	0	0.00116845	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748170	19748170	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:19748170C>T	uc009zzj.2	-	5	1235	c.1186G>A	c.(1186-1188)GAT>AAT	p.D396N		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	396					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TACATGAGATCGAACTTATGG	0.642													19	55					0	0	0.000720815	0	0
SACS	26278	broad.mit.edu	37	13	23909874	23909874	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:23909874G>A	uc001uon.2	-	10	8730	c.8141C>T	c.(8140-8142)TCG>TTG	p.S2714L	SACS_uc001uoo.2_Missense_Mutation_p.S2567L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2714					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGGAACAGACGAAATTTCCGA	0.388													25	56					0	0	0.000586117	0	0
RNF6	6049	broad.mit.edu	37	13	26788407	26788407	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:26788407G>C	uc001uqo.2	-	5	1903	c.1612C>G	c.(1612-1614)CAA>GAA	p.Q538E	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.Q538E|RNF6_uc001uqp.2_Missense_Mutation_p.Q538E|RNF6_uc001uqq.2_Missense_Mutation_p.Q538E|RNF6_uc010tdk.1_Missense_Mutation_p.Q182E	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	538					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		TGCCTGTCTTGAGAGGAACCT	0.498													3	135					0	0	6.4e-05	0	0
FLT1	2321	broad.mit.edu	37	13	29041706	29041706	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:29041706C>T	uc001usb.3	-	2	398	c.113G>A	c.(112-114)GGC>GAC	p.G38D	FLT1_uc010aar.1_Missense_Mutation_p.G38D|FLT1_uc001usc.3_Missense_Mutation_p.G38D|FLT1_uc010tdp.1_Missense_Mutation_p.G38D|FLT1_uc001usd.2_Missense_Mutation_p.G38D	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	38	Ig-like C2-type 1.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GTGCTGGGTGCCTTTTAAACT	0.378													10	16					0	0	0.000308642	0	0
MTUS2	23281	broad.mit.edu	37	13	29600708	29600708	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:29600708G>A	uc001usl.3	+	1	1961	c.1903G>A	c.(1903-1905)GAG>AAG	p.E635K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	625						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AAAAACAGAGGAGAGGACAGA	0.537													15	21					0	0	0.000422831	0	0
NBEA	26960	broad.mit.edu	37	13	35733303	35733303	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:35733303G>A	uc001uvb.2	+	23	3201	c.2995G>A	c.(2995-2997)GAA>AAA	p.E999K	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	999						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		AGGTGGAATGGAAATTCGAGA	0.428													36	61					0	0	0.00148497	0	0
AKAP11	11215	broad.mit.edu	37	13	42875847	42875847	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:42875847C>T	uc001uys.1	+	8	3140	c.2965C>T	c.(2965-2967)CCT>TCT	p.P989S		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	989					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TCCCAAATTTCCTGACTCTCA	0.403													18	33					0	0	0.000566183	0	0
DHRS12	79758	broad.mit.edu	37	13	52364186	52364186	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:52364186C>T	uc001vfq.2	-	5	457	c.409G>A	c.(409-411)GAA>AAA	p.E137K	DHRS12_uc001vfr.1_Missense_Mutation_p.E88K|DHRS12_uc001vfs.1_Missense_Mutation_p.E88K			A0PJE2	DHR12_HUMAN	RecName: Full=Dehydrogenase/reductase SDR family member 12;          EC=1.1.-.-;	137							binding|oxidoreductase activity				0		Breast(56;0.00173)|Prostate(109;0.00899)|Lung NSC(96;0.0199)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.81e-08)		AGTCCATCTTCTGTGAGCTCT	0.308													31	63					0	0	0.000953801	0	0
PCDH20	64881	broad.mit.edu	37	13	61987393	61987393	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:61987393C>T	uc001vid.3	-	2	1203	c.839G>A	c.(838-840)AGG>AAG	p.R280K	PCDH20_uc010thj.1_Missense_Mutation_p.R280K	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	253	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		CTGGGTTTCCCTGTCCAAAGC	0.522													20	25					0	0	0.000958276	0	0
ABHD13	84945	broad.mit.edu	37	13	108882144	108882144	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:108882144C>T	uc001vqq.2	+	2	843	c.578C>T	c.(577-579)TCC>TTC	p.S193F		NM_032859	NP_116248	Q7L211	ABHDD_HUMAN	abhydrolase domain containing 13	193		Charge relay system (By similarity).				integral to membrane	hydrolase activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					TTTGGCCGTTCCTTGGGTGGA	0.403													30	55					0	0	0.00127121	0	0
GRK1	6011	broad.mit.edu	37	13	114322079	114322079	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr13:114322079G>A	uc010tkf.1	+	1	486	c.378G>A	c.(376-378)CTG>CTA	p.L126L		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	126	RGS.|N-terminal.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			GCAGCTTCCTGGATGAGGGGA	0.617													4	13					0	0	0.00024832	0	0
OR4M1	441670	broad.mit.edu	37	14	20248579	20248579	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:20248579C>T	uc010tku.1	+	1	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATATTTCTATCCTTCTATTTG	0.413													13	167					0	0	0.000308642	0	0
OR4N2	390429	broad.mit.edu	37	14	20296196	20296197	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:20296196_20296197CT>TA	uc010tkv.1	+	1	589_590	c.589_590CT>TA	c.(589-591)CTT>TAT	p.L197Y		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	197	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGTGGTGGAGCTTCTGATGGTC	0.53													23	51					0	0	6.4e-05	0	0
OR4K1	79544	broad.mit.edu	37	14	20404050	20404050	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:20404050C>T	uc001vwj.1	+	1	225	c.225C>T	c.(223-225)AAC>AAT	p.N75N		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTCAGTCTAACTTTGCCACCC	0.378													15	140					0	0	0.000308642	0	0
STRN3	29966	broad.mit.edu	37	14	31424860	31424860	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:31424860G>A	uc001wqu.2	-	3	642	c.426C>T	c.(424-426)AAC>AAT	p.N142N	STRN3_uc001wqv.2_Silent_p.N142N|STRN3_uc010tpj.1_RNA	NM_001083893	NP_001077362	Q13033	STRN3_HUMAN	nuclear autoantigen isoform 1	142					negative regulation of estrogen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus	cytoplasm|dendrite|Golgi apparatus|neuronal cell body|nucleoplasm|nucleus|plasma membrane|protein complex	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.0124)		AGTCACCTTGGTTCAGTTCCG	0.303													18	17					0	0	0.00229938	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724353	38724353	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:38724353C>T	uc001wum.1	-	1	1222	c.875G>A	c.(874-876)GGA>GAA	p.G292E		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	292	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GGTCGGCTGTCCTTCCCCACT	0.667													18	18					0	0	0.00074312	0	0
CTAGE5	4253	broad.mit.edu	37	14	39818088	39818088	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:39818088T>C	uc001wvg.3	+	23	2491	c.2155T>C	c.(2155-2157)TTC>CTC	p.F719L	CTAGE5_uc001wuz.3_Missense_Mutation_p.F707L|CTAGE5_uc001wuy.3_Missense_Mutation_p.F639L|CTAGE5_uc001wvb.3_Missense_Mutation_p.F647L|CTAGE5_uc001wvc.3_Missense_Mutation_p.F621L|CTAGE5_uc001wva.3_Missense_Mutation_p.F690L|CTAGE5_uc001wvh.3_Missense_Mutation_p.F676L|CTAGE5_uc001wvf.3_Missense_Mutation_p.F644L|CTAGE5_uc001wvi.3_Missense_Mutation_p.F724L|CTAGE5_uc010amz.2_Missense_Mutation_p.F335L|CTAGE5_uc001wvj.3_Missense_Mutation_p.F690L	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	719	Pro-rich.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		AGGACCTCCTTTCCCCCCACC	0.537													9	94					0	0	0.000442599	0	0
ARID4A	5926	broad.mit.edu	37	14	58796780	58796780	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:58796780G>A	uc001xdp.2	+	11	1053	c.799G>A	c.(799-801)GAT>AAT	p.D267N	ARID4A_uc001xdo.2_Missense_Mutation_p.D267N|ARID4A_uc001xdq.2_Missense_Mutation_p.D267N|ARID4A_uc010apg.1_5'Flank	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	267					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						TTGGAAAATGGATATAAGTGA	0.378													45	29					0	0	0.00222228	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68248162	68248162	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:68248162G>A	uc001xka.2	-	22	4596	c.4457C>T	c.(4456-4458)CCC>CTC	p.P1486L	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.P1486L	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1486					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TGACTCCAGGGGCCACCTGTC	0.517													32	32					0	0	0.000692331	0	0
SMOC1	64093	broad.mit.edu	37	14	70461195	70461195	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:70461195C>T	uc001xls.1	+	7	915	c.662C>T	c.(661-663)TCA>TTA	p.S221L	SMOC1_uc001xlt.1_Missense_Mutation_p.S221L	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	221					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		ATAAGAAATTCAGGTAAATAA	0.343													7	67					0	0	0.000157383	0	0
KIAA0317	9870	broad.mit.edu	37	14	75143345	75143345	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:75143345G>A	uc001xqb.2	-	6	1097	c.592C>T	c.(592-594)CCC>TCC	p.P198S	KIAA0317_uc010tut.1_Missense_Mutation_p.P37S|KIAA0317_uc001xqc.2_Missense_Mutation_p.P198S	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	198					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		TTGTTGGTGGGATTATCATAC	0.448													9	88					0	0	0.000442599	0	0
STON2	85439	broad.mit.edu	37	14	81736942	81736942	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:81736942G>A	uc010tvu.1	-	5	2886	c.2685C>T	c.(2683-2685)TTC>TTT	p.F895F	STON2_uc001xvk.1_Intron|STON2_uc010tvt.1_Silent_p.F692F	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	895					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TGGCTAAAAGGAATAAGAGGG	0.468													48	70					0	0	0.000781405	0	0
EML5	161436	broad.mit.edu	37	14	89094155	89094155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:89094155G>A	uc001xxg.2	-	34	4552	c.4366C>T	c.(4366-4368)CCT>TCT	p.P1456S	EML5_uc001xxf.2_Missense_Mutation_p.P243S|EML5_uc001xxh.1_Missense_Mutation_p.P587S	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1448	WD 20.					cytoplasm|microtubule				ovary(3)	3						TGAATAGAAGGAGCTGTAGCT	0.358													4	3					0	0	0.000602214	0	0
SERPINA13	388007	broad.mit.edu	37	14	95111306	95111306	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:95111306C>T	uc001ydt.2	+	4	1126	c.1038C>T	c.(1036-1038)TTC>TTT	p.F346F		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						AACTCGATTTCCACTTCCCCA	0.542													4	37					0	0	0.00116845	0	0
SLC25A29	123096	broad.mit.edu	37	14	100758856	100758856	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:100758856G>A	uc001yha.2	-	4	967	c.676C>T	c.(676-678)CCG>TCG	p.P226S	SLC25A29_uc010avv.2_Missense_Mutation_p.P160S|SLC25A29_uc010twx.1_Silent_p.P203P	NM_001039355	NP_001034444	Q8N8R3	MCATL_HUMAN	solute carrier family 25, member 29	226	Solcar 3.					integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1		Melanoma(154;0.152)			L-Carnitine(DB00583)	CGGTAGCGCGGGGCGCCCCGC	0.706													5	4					0	0	0.00116845	0	0
MARK3	4140	broad.mit.edu	37	14	103932026	103932026	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:103932026C>T	uc001ymz.3	+	8	1339	c.673C>T	c.(673-675)CAG>TAG	p.Q225*	MARK3_uc001ymx.3_Nonsense_Mutation_p.Q225*|MARK3_uc001ymw.3_Nonsense_Mutation_p.Q225*|MARK3_uc001yna.3_Nonsense_Mutation_p.Q225*|MARK3_uc001ymy.3_Intron|MARK3_uc010awp.2_Nonsense_Mutation_p.Q248*|MARK3_uc010tyb.1_Nonsense_Mutation_p.Q36*	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	225	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			TGAGCTCTTCCAGGGCAAGAA	0.468													8	93					0	0	0.000442599	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410577	105410577	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:105410577C>A	uc010axc.1	-	7	11331	c.11211G>T	c.(11209-11211)AAG>AAT	p.K3737N	AHNAK2_uc001ypx.2_Missense_Mutation_p.K3637N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3737						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCTGGGGGCCCTTGAGGTCCA	0.627													62	43					7.93689e-15	3.50157e-14	0.000781405	1	0
ADAM6	8755	broad.mit.edu	37	14	106586351	106586352	+	RNA	DNP	CC	TT	TT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:106586351_106586352CC>TT	uc010tyt.1	-	1286		c.27878_27879GG>AA			uc001ysv.2_RNA					Parts of antibodies, mostly variable regions.												0						GAAGGTGAATCCAGAGGCTGCA	0.564													4	53					0	0	6.4e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106692110	106692110	+	RNA	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:106692110G>A	uc010tyt.1	-	753		c.20343C>T								Parts of antibodies, mostly variable regions.												0						AAACCCAGCGGAGCCCCAGTT	0.498													46	41					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	106967395	106967395	+	RNA	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:106967395G>A	uc010tyt.1	-	201		c.9046C>T								Parts of antibodies, mostly variable regions.												0						CCTCTAAACTGGAAAAAATCC	0.567													38	23					0	0	0.000814825	0	0
ADAM6	8755	broad.mit.edu	37	14	107183569	107183569	+	RNA	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr14:107183569C>T	uc010tyt.1	-	29		c.1988G>A								Parts of antibodies, mostly variable regions.												0						ACTCCAGCCCCTTCCCGGGAG	0.532													4	39					0	0	0.000602214	0	0
CXADRP2	646243	broad.mit.edu	37	15	22016238	22016238	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:22016238G>A	uc010tzk.1	-	1	641	c.479C>T	c.(478-480)TCA>TTA	p.S160L		NR_024387				RecName: Full=Coxsackievirus and adenovirus receptor; AltName: Full=Coxsackievirus B-adenovirus receptor; AltName: Full=HCVADR;          Short=hCAR; AltName: Full=CVB3-binding protein; Flags: Precursor;												0						TGCTAACCATGAAGTGGGCAT	0.378													6	52					0	0	0.00198382	0	0
HERC2	8924	broad.mit.edu	37	15	28408299	28408300	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:28408299_28408300CC>TT	uc001zbj.2	-	69	10792_10793	c.10686_10687GG>AA	c.(10684-10689)GGGGAC>GGAAAC	p.D3563N		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3563					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTGCCCCTGTCCCCGGCCCGGC	0.644													17	41					0	0	6.4e-05	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40259840	40259841	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:40259840_40259841CC>TT	uc001zkm.1	+	9	1363_1364	c.1313_1314CC>TT	c.(1312-1314)ACC>ATT	p.T438I	EIF2AK4_uc001zkl.2_Missense_Mutation_p.T438I|EIF2AK4_uc010bbj.1_Missense_Mutation_p.T167I	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	438	Protein kinase 1.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		GCAGAAGGCACCGTCAAGATTA	0.48													28	28					0	0	6.4e-05	0	0
TMEM62	80021	broad.mit.edu	37	15	43446960	43446960	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:43446960C>T	uc001zqr.2	+	9	1392	c.1113C>T	c.(1111-1113)CCC>CCT	p.P371P	TMEM62_uc010bda.2_Silent_p.P241P	NM_024956	NP_079232	Q0P6H9	TMM62_HUMAN	transmembrane protein 62	371						integral to membrane				ovary(1)|breast(1)	2		all_cancers(109;1.16e-10)|all_epithelial(112;2.01e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;4.23e-07)		TGTCTGGTCCCATTTTCGTAC	0.378													12	22					0	0	0.000978159	0	0
STRC	161497	broad.mit.edu	37	15	43900142	43900142	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:43900142C>T	uc001zsf.2	-	18	3791	c.3713G>A	c.(3712-3714)AGG>AAG	p.R1238K	STRC_uc010bdl.2_Missense_Mutation_p.R465K|STRC_uc001zse.2_5'UTR	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1238					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CATTGCCATCCTCCGCTGTAG	0.552													40	66					0	0	0.000781405	0	0
DUOX2	50506	broad.mit.edu	37	15	45398334	45398334	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:45398334C>T	uc010bea.2	-	17	2340	c.2137G>A	c.(2137-2139)GAG>AAG	p.E713K	DUOX2_uc001zun.2_Missense_Mutation_p.E713K	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	713	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		AGGTCATACTCCTTAGGGATC	0.597													9	14					0	0	0.000274275	0	0
GABPB1	2553	broad.mit.edu	37	15	50570924	50570924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:50570924G>A	uc001zyb.2	-	9	1517	c.1093C>T	c.(1093-1095)CGA>TGA	p.R365*	GABPB1_uc001zya.2_Nonsense_Mutation_p.R353*|GABPB1_uc010ufg.1_Nonsense_Mutation_p.R289*	NM_005254	NP_005245	Q06547	GABP1_HUMAN	GA binding protein transcription factor, beta	365					positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)	1						AGCTGCTGTCGATATTTTTGT	0.368													40	77					0	0	0.00170553	0	0
USP8	9101	broad.mit.edu	37	15	50741605	50741605	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:50741605C>T	uc001zym.3	+	5	758	c.258C>T	c.(256-258)TTC>TTT	p.F86F	USP8_uc001zyk.1_5'UTR|USP8_uc001zyl.3_Silent_p.F86F|USP8_uc001zyn.3_Silent_p.F86F|USP8_uc010ufh.1_Intron|USP8_uc010bev.1_5'UTR	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	86	MIT.				cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		AGGATTATTTCCATTCAATAC	0.313													12	17					0	0	0.00185496	0	0
USP50	373509	broad.mit.edu	37	15	50830987	50830987	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:50830987G>A	uc001zyq.3	-	5	917	c.737C>T	c.(736-738)TCC>TTC	p.S246F		NM_203494	NP_987090	E9PP86	E9PP86_HUMAN	ubiquitin specific protease 50	241					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			lung(1)|breast(1)	2				all cancers(107;0.000519)|GBM - Glioblastoma multiforme(94;0.00288)		TTCACAAAAGGAGCAGTGAAT	0.373													24	23					0	0	0.000720815	0	0
TRPM7	54822	broad.mit.edu	37	15	50925153	50925153	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:50925153G>A	uc001zyt.3	-	9	1308	c.1044C>T	c.(1042-1044)TCC>TCT	p.S348S	TRPM7_uc010bew.1_Silent_p.S348S	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	348	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TTTTGATAGTGGAAATAATAT	0.343													21	43					0	0	0.00152264	0	0
MYO5C	55930	broad.mit.edu	37	15	52497127	52497127	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:52497127C>T	uc010bff.2	-	38	4892	c.4755G>A	c.(4753-4755)GCG>GCA	p.A1585A	MYO5C_uc010uga.1_RNA|uc002abv.2_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1585	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCAGCGTGACCGCCCCGATCA	0.577													7	15					0	0	0.00198382	0	0
WDR72	256764	broad.mit.edu	37	15	53991959	53991959	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:53991959C>T	uc002acj.2	-	13	1795	c.1753G>A	c.(1753-1755)GAA>AAA	p.E585K	WDR72_uc010bfi.1_Missense_Mutation_p.E585K	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	585	WD 8.									lung(1)|skin(1)	2				all cancers(107;0.0511)		GTTTCAATTTCCCAGATATAA	0.373													43	93					0	0	0.000680045	0	0
VPS13C	54832	broad.mit.edu	37	15	62241655	62241655	+	Silent	SNP	G	A	A	rs80151244	byFrequency	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:62241655G>A	uc002agz.2	-	42	4820	c.4746C>T	c.(4744-4746)ATC>ATT	p.I1582I	VPS13C_uc002aha.2_Silent_p.I1539I|VPS13C_uc002ahb.1_Silent_p.I1582I|VPS13C_uc002ahc.1_Silent_p.I1539I	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1582					protein localization					ovary(2)	2						CTTTGACAGCGATACTTCTGG	0.348													38	63					0	0	0.00128727	0	0
HERC1	8925	broad.mit.edu	37	15	63955388	63955388	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:63955388G>A	uc002amp.2	-	44	8844	c.8696C>T	c.(8695-8697)TCT>TTT	p.S2899F		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2899					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GGCCTGCACAGAGCGGTATAA	0.393													56	105					0	0	0.000781405	0	0
HERC1	8925	broad.mit.edu	37	15	63970335	63970335	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:63970335G>A	uc002amp.2	-	37	6927	c.6779C>T	c.(6778-6780)TCG>TTG	p.S2260L		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2260					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GCTCTGAACCGAGCGGCTTTT	0.428													27	29					0	0	0.00127121	0	0
IGDCC4	57722	broad.mit.edu	37	15	65687481	65687481	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:65687481C>T	uc002aou.1	-	8	1737	c.1527G>A	c.(1525-1527)CTG>CTA	p.L509L	IGDCC4_uc002aot.1_Silent_p.L97L	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	509	Extracellular (Potential).|Fibronectin type-III 1.					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGCTGGCTCCCAGCTGGGAGT	0.557													8	23					0	0	0.000274275	0	0
SLC24A1	9187	broad.mit.edu	37	15	65916838	65916838	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:65916838G>A	uc010ujf.1	+	2	707	c.420G>A	c.(418-420)AGG>AGA	p.R140R	SLC24A1_uc010ujd.1_Silent_p.R140R|SLC24A1_uc010uje.1_Silent_p.R140R|SLC24A1_uc010ujg.1_Silent_p.R140R|SLC24A1_uc010ujh.1_Silent_p.R140R	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	140	Extracellular (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						CAGAAAGAAGGAAGGAAGACA	0.438													5	11					0	0	0.000602214	0	0
SNUPN	10073	broad.mit.edu	37	15	75902304	75902304	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:75902304G>A	uc002ban.2	-	4	425	c.335C>T	c.(334-336)CCT>CTT	p.P112L	SNUPN_uc002bao.2_Missense_Mutation_p.P112L|SNUPN_uc002bap.2_Missense_Mutation_p.P154L|SNUPN_uc002baq.2_Missense_Mutation_p.P112L|SNUPN_uc002bar.2_Missense_Mutation_p.P112L|SNUPN_uc002bas.2_Missense_Mutation_p.P112L	NM_005701	NP_005692	O95149	SPN1_HUMAN	snurportin 1	112	Necessary for interaction with XPO1.				ncRNA metabolic process|protein import into nucleus|spliceosomal snRNP assembly	cytosol|nuclear pore	protein transporter activity|RNA cap binding			pancreas(1)	1						CAAATCTGAAGGAACGTCAAT	0.493													20	25					0	0	0.00188189	0	0
FBXO22	26263	broad.mit.edu	37	15	76225279	76225279	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:76225279C>T	uc002bbk.2	+	7	1153	c.1048C>T	c.(1048-1050)CCT>TCT	p.P350S	FBXO22_uc002bbl.2_Missense_Mutation_p.P246S|FBXO22OS_uc002bbm.1_RNA	NM_147188	NP_671717	Q8NEZ5	FBX22_HUMAN	F-box only protein 22 isoform a	350					ubiquitin-dependent protein catabolic process		ubiquitin-protein ligase activity				0						AAAGTTTTTTCCTAGTGTTCC	0.413													24	53					0	0	0.00106085	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79059832	79059832	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:79059832C>T	uc002bej.3	-	18	2959	c.2748G>A	c.(2746-2748)CAG>CAA	p.Q916Q	ADAMTS7_uc010und.1_Intron	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	916	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CCAGGGCGCTCTGCTCATCCA	0.706													8	15					0	0	0.000274275	0	0
KIAA1199	57214	broad.mit.edu	37	15	81224217	81224217	+	Missense_Mutation	SNP	G	A	A	rs141395577		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:81224217G>A	uc002bfw.1	+	21	2890	c.2630G>A	c.(2629-2631)GGA>GAA	p.G877E	KIAA1199_uc010unn.1_Missense_Mutation_p.G877E	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	877								p.G877E(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCAATTAGAGGAATTCAGTTA	0.473													31	55					0	0	0.00283554	0	0
TM6SF1	53346	broad.mit.edu	37	15	83791524	83791524	+	Missense_Mutation	SNP	G	A	A	rs142876988		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:83791524G>A	uc002bjp.2	+	6	606	c.497G>A	c.(496-498)CGA>CAA	p.R166Q	TM6SF1_uc010bmq.2_Missense_Mutation_p.R166Q|TM6SF1_uc002bjq.2_Intron|TM6SF1_uc010bmr.2_Intron|TM6SF1_uc002bjr.2_Missense_Mutation_p.R18Q	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	166						integral to membrane				ovary(1)	1						TATGGAACACGAATTTGCCCT	0.368													27	43					0	0	0.00127121	0	0
ACAN	176	broad.mit.edu	37	15	89400408	89400408	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:89400408G>A	uc010upo.1	+	12	4966	c.4592G>A	c.(4591-4593)GGA>GAA	p.G1531E	ACAN_uc010upp.1_Missense_Mutation_p.G1531E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1531					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTCCCTTCTGGAGAAGAAGTT	0.507													14	27					0	0	0.00185496	0	0
ANPEP	290	broad.mit.edu	37	15	90348422	90348422	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr15:90348422G>A	uc002bop.3	-	4	1076	c.784C>T	c.(784-786)CCC>TCC	p.P262S		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	262	Extracellular.|Interaction with HCoV-229E.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TTCCAGTTGGGGTCTTCTGGA	0.607													39	84					0	0	0.000680045	0	0
ITFG3	83986	broad.mit.edu	37	16	304619	304619	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:304619C>T	uc002cgf.2	+	3	402	c.207C>T	c.(205-207)GTC>GTT	p.V69V	ITFG3_uc010bqr.2_Intron|ITFG3_uc002cgg.2_Silent_p.V69V|ITFG3_uc010uud.1_RNA|ITFG3_uc002cgh.2_Silent_p.V69V	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	69	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				TCTCATTCGTCATCCCGTGTC	0.607													79	126					0	0	0.000781405	0	0
NARFL	64428	broad.mit.edu	37	16	780930	780930	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:780930C>T	uc002cjr.2	-	10	1117	c.1105G>A	c.(1105-1107)GGC>AGC	p.G369S	NARFL_uc002cjp.2_Missense_Mutation_p.G267S|NARFL_uc002cjq.2_Missense_Mutation_p.G267S|NARFL_uc002cjs.2_Missense_Mutation_p.G151S	NM_022493	NP_071938	Q9H6Q4	NARFL_HUMAN	nuclear prelamin A recognition factor-like	369					iron-sulfur cluster assembly|oxygen homeostasis|regulation of transcription, DNA-dependent|response to hypoxia		4 iron, 4 sulfur cluster binding|metal ion binding				0		Hepatocellular(780;0.0218)				TTGCGGAAGCCGTACGCCATT	0.607													21	45					0	0	0.00229938	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270746	1270746	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:1270746G>A	uc002cks.2	+	35	7062	c.6814G>A	c.(6814-6816)GAC>AAC	p.D2272N	CACNA1H_uc002ckt.2_Missense_Mutation_p.D2266N|CACNA1H_uc002cku.2_Missense_Mutation_p.D967N|CACNA1H_uc010brj.2_Missense_Mutation_p.D983N|CACNA1H_uc002ckv.2_Missense_Mutation_p.D961N	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2272	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGAGCCGCTGGACCTCGGGGT	0.677													13	10					0	0	0.00244969	0	0
CLCN7	1186	broad.mit.edu	37	16	1507738	1507738	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:1507738G>A	uc002clv.2	-	8	805	c.695C>T	c.(694-696)TCC>TTC	p.S232F	CLCN7_uc002clw.2_Missense_Mutation_p.S208F	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	232	Helical; (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				GATCACACCGGACACTTTGAT	0.607													12	36					0	0	0.000422831	0	0
RPS2	6187	broad.mit.edu	37	16	2012137	2012137	+	Missense_Mutation	SNP	C	T	T	rs142405634	by1000genomes	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:2012137C>T	uc002cnn.2	-	6	1032	c.844G>A	c.(844-846)GTG>ATG	p.V282M	RPS2_uc010bsa.1_RNA|RPS2_uc002cnl.2_Missense_Mutation_p.V224M|RPS2_uc002cnm.2_RNA|RPS2_uc002cno.2_Missense_Mutation_p.V282M|SNHG9_uc002cnr.2_5'Flank	NM_002952	NP_002943	P15880	RS2_HUMAN	ribosomal protein S2	282					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleoplasm	fibroblast growth factor 1 binding|fibroblast growth factor 3 binding|RNA binding|structural constituent of ribosome				0						GTCCGCTGCACGGAGACTCTG	0.498													14	23					0	0	0.000566183	0	0
SRL	6345	broad.mit.edu	37	16	4242577	4242577	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:4242577G>A	uc002cvz.3	-	6	1012	c.999C>T	c.(997-999)ATC>ATT	p.I333I	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	792						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						CGTGCTGGCGGATGAAGGCAA	0.537													46	88					0	0	0.000781405	0	0
PPL	5493	broad.mit.edu	37	16	4949107	4949107	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:4949107C>T	uc002cyd.1	-	8	873	c.783G>A	c.(781-783)CGG>CGA	p.R261R		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	261	Potential.|Spectrin 1.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CCTCCAGGTTCCGGTTGATGA	0.637													23	44					0	0	0.00047179	0	0
ABCC1	4363	broad.mit.edu	37	16	16215849	16215849	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:16215849C>T	uc010bvi.2	+	24	3583	c.3408C>T	c.(3406-3408)TCC>TCT	p.S1136S	ABCC1_uc010bvj.2_Silent_p.S1077S|ABCC1_uc010bvk.2_Silent_p.S1080S|ABCC1_uc010bvl.2_Silent_p.S1136S|ABCC1_uc010bvm.2_Silent_p.S1021S|ABCC1_uc002del.3_Silent_p.S1030S	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	1136	Cytoplasmic.|ABC transmembrane type-1 2.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	ACGTGGCTTCCTCCCGGCAGC	0.612													12	21					0	0	0.00244969	0	0
C16orf88	400506	broad.mit.edu	37	16	19726325	19726325	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:19726325C>T	uc002dgq.2	-	2	48	c.33G>A	c.(31-33)GGG>GGA	p.G11G	IQCK_uc002dgr.2_5'Flank|IQCK_uc002dgs.2_5'Flank|IQCK_uc010vat.1_5'Flank|IQCK_uc010bwc.2_5'Flank|IQCK_uc010vau.1_5'Flank	NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	11						nucleolus					0						TCTCTGGGAGCCCAAGGTCTA	0.378													33	51					0	0	0.00128727	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554476	20554476	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:20554476C>T	uc002dhj.3	-	12	1600	c.1390G>A	c.(1390-1392)GAT>AAT	p.D464N	ACSM2B_uc002dhk.3_Missense_Mutation_p.D464N|ACSM2B_uc010bwf.1_Missense_Mutation_p.D464N	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	464					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTAATGATATCATCTGCCCGT	0.507													75	228					0	0	0.000781405	0	0
PRKCB	5579	broad.mit.edu	37	16	24192196	24192196	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:24192196G>A	uc002dmd.2	+	13	1677	c.1480G>A	c.(1480-1482)GAT>AAT	p.D494N	PRKCB_uc002dme.2_Missense_Mutation_p.D494N	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	494	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	AAACATCTGGGATGGGGTGAC	0.507													34	47					0	0	0.00058488	0	0
GTF3C1	2975	broad.mit.edu	37	16	27503770	27503770	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:27503770G>A	uc002dov.1	-	19	3080	c.3040C>T	c.(3040-3042)CTG>TTG	p.L1014L	GTF3C1_uc002dou.2_Silent_p.L1014L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1014						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CTGCGGGCCAGGTTGTAATGT	0.522													22	70					0	0	0.000720815	0	0
KIAA0556	23247	broad.mit.edu	37	16	27784432	27784432	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:27784432T>C	uc002dow.2	+	23	4235	c.4211T>C	c.(4210-4212)TTT>TCT	p.F1404S		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1404										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						ATTTTCCAGTTTCAGCTTCTC	0.428													14	13					0	0	0.000566183	0	0
SULT1A1	6817	broad.mit.edu	37	16	28619805	28619805	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:28619805G>A	uc002dqi.2	-	2	741	c.268C>T	c.(268-270)CCC>TCC	p.P90S	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.P90S|SULT1A1_uc002dqk.2_Missense_Mutation_p.P90S|SULT1A1_uc002dql.2_Missense_Mutation_p.P90S|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Missense_Mutation_p.P181S|SULT1A1_uc002dqo.2_Missense_Mutation_p.P90S|SULT1A1_uc002dqp.2_Missense_Mutation_p.P90S	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	90				P -> L (in Ref. 3; AAA67895).	3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						ACACCTGAGGGAATCCCTGGG	0.587													10	24					0	0	0.000978159	0	0
RABEP2	79874	broad.mit.edu	37	16	28935917	28935917	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:28935917G>A	uc002drq.2	-	2	129	c.81C>T	c.(79-81)TCC>TCT	p.S27S	uc010vct.1_Intron|RABEP2_uc010vdf.1_Intron|RABEP2_uc010byn.2_Silent_p.S27S|RABEP2_uc002drr.2_Silent_p.S27S	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	27					endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CCCCTTCCTGGGACCGGGAGT	0.617													8	29					0	0	0.000274275	0	0
ITGAD	3681	broad.mit.edu	37	16	31435519	31435519	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:31435519G>A	uc002ebv.1	+	28	3305	c.3256G>A	c.(3256-3258)GCT>ACT	p.A1086T	ITGAD_uc010cap.1_Missense_Mutation_p.A1087T	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	1086	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						ATTTATGAGAGCTCAGGTAGA	0.562													15	22					0	0	0.000308642	0	0
SALL1	6299	broad.mit.edu	37	16	51174411	51174411	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:51174411C>T	uc010vgs.1	-	2	1753	c.1722G>A	c.(1720-1722)GAG>GAA	p.E574E	SALL1_uc010vgr.1_Silent_p.E477E|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	574					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGGGGCTGGCTCTTCCGTCT	0.612													16	28					0	0	0.000566183	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67854848	67854848	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:67854848G>A	uc002euj.2	+	3	486	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	TSNAXIP1_uc010cep.2_5'UTR|TSNAXIP1_uc010vjz.1_Intron|TSNAXIP1_uc002euf.3_Intron|TSNAXIP1_uc010vka.1_Missense_Mutation_p.R85Q|TSNAXIP1_uc010vkb.1_Intron|TSNAXIP1_uc002eug.3_Intron|TSNAXIP1_uc002euh.3_Intron|TSNAXIP1_uc002eui.3_Intron|TSNAXIP1_uc002euk.2_5'Flank	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	31					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		TACCGGAAGCGAGTAGGGTAA	0.597													26	54					0	0	0.00127121	0	0
HYDIN	54768	broad.mit.edu	37	16	70841964	70841964	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:70841964G>A	uc002ezr.2	-	86	15010	c.14882C>T	c.(14881-14883)ACC>ATC	p.T4961I	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4962										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTACAGTCGGTCTGAAAGGG	0.542													16	45					0	0	0.00121646	0	0
HYDIN	54768	broad.mit.edu	37	16	70954536	70954536	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:70954536C>T	uc002ezr.2	-	46	7868	c.7740G>A	c.(7738-7740)TGG>TGA	p.W2580*		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2581										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGGCCTGCTTCCAGCTCAAGC	0.443													8	9					0	0	0.000442599	0	0
TERF2IP	54386	broad.mit.edu	37	16	75688173	75688173	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:75688173C>T	uc002fet.1	+	2	770	c.673C>T	c.(673-675)CCA>TCA	p.P225S		NM_018975	NP_061848	Q9NYB0	TE2IP_HUMAN	telomeric repeat binding factor 2, interacting	225	Asp/Glu-rich (acidic).				negative regulation of DNA recombination at telomere|negative regulation of telomere maintenance|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of double-strand break repair via homologous recombination|telomere maintenance via telomerase|transcription, DNA-dependent	cytoplasm|nuclear telomere cap complex|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1						TTTAACAGAACCACAGAATAA	0.418													31	62					0	0	0.00283554	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76574680	76574680	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr16:76574680G>A	uc002feu.1	+	23	3820	c.3435G>A	c.(3433-3435)AGG>AGA	p.R1145R	CNTNAP4_uc002fev.1_Silent_p.R1009R|CNTNAP4_uc010chb.1_Silent_p.R1072R|CNTNAP4_uc002fex.1_Silent_p.R1148R	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1145	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TATTGGGCAGGATTTTAGGTA	0.388													4	4					0	0	0.00024832	0	0
OR1E1	8387	broad.mit.edu	37	17	3301220	3301220	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:3301220A>C	uc002fvj.1	-	1	485	c.485T>G	c.(484-486)CTC>CGC	p.L162R		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGGCCATGAGTAAAGTGTG	0.532													5	15					0	0	0.000602214	0	0
ZZEF1	23140	broad.mit.edu	37	17	3947590	3947590	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:3947590A>T	uc002fxe.2	-	38	6158	c.6094T>A	c.(6094-6096)TCG>ACG	p.S2032T	ZZEF1_uc002fxh.2_Missense_Mutation_p.S346T|ZZEF1_uc002fxi.2_Missense_Mutation_p.S267T|ZZEF1_uc002fxj.1_Missense_Mutation_p.S645T	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2032							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGATCCTTCGATAATGATACA	0.393													25	20					0	0	0.000720815	0	0
NEURL4	84461	broad.mit.edu	37	17	7230508	7230508	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:7230508G>A	uc002gga.1	-	3	776	c.769C>T	c.(769-771)CCT>TCT	p.P257S	NEURL4_uc002ggb.1_Missense_Mutation_p.P257S|NEURL4_uc002ggc.1_5'Flank	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	257							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGGCTGTTAGGAAACGTCTCC	0.627													9	8					0	0	0.000673444	0	0
PIK3R5	23533	broad.mit.edu	37	17	8790475	8790475	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:8790475C>T	uc002glt.2	-	12	1910	c.1843G>A	c.(1843-1845)GAC>AAC	p.D615N	PIK3R5_uc010vuz.1_Missense_Mutation_p.D615N|PIK3R5_uc002glu.3_Missense_Mutation_p.D229N	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	615					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TACCAGGGGTCCAGCATGCCG	0.612													17	12					0	0	0.00074312	0	0
MYH4	4622	broad.mit.edu	37	17	10362699	10362699	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:10362699C>T	uc002gmn.2	-	15	1567	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	486	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGCAGTTTCTCGTTGGTGAAG	0.433													34	24					0	0	0.00128727	0	0
HS3ST3B1	9953	broad.mit.edu	37	17	14205243	14205243	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:14205243G>A	uc002goh.1	+	1	738	c.408G>A	c.(406-408)CAG>CAA	p.Q136Q	MGC12916_uc010vvv.1_5'Flank	NM_006041	NP_006032	Q9Y662	HS3SB_HUMAN	heparan sulfate D-glucosaminyl	136	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Golgi membrane|integral to plasma membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		GGAGCAAGCAGCTGCCGCAGG	0.697													4	6					0	0	0.00024832	0	0
SLC6A4	6532	broad.mit.edu	37	17	28538366	28538366	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:28538366G>A	uc002hey.3	-	10	1825	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	427	Helical; Name=8; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	ACATCAGAAAGAAGATGATGG	0.537													25	16					0	0	0.00106085	0	0
ADAP2	55803	broad.mit.edu	37	17	29272027	29272027	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:29272027G>A	uc002hfx.2	+	6	892	c.613G>A	c.(613-615)GAT>AAT	p.D205N	ADAP2_uc010csk.2_Missense_Mutation_p.D211N|ADAP2_uc002hfy.2_Missense_Mutation_p.D205N|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	205	PH 1.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						CTACAGGAGAGATGGCCACAC	0.547													15	11					0	0	0.000422831	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348852	30348852	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:30348852G>A	uc002hgu.2	+	1	698	c.687G>A	c.(685-687)ATG>ATA	p.M229I	LRRC37B_uc010wbx.1_Missense_Mutation_p.M147I|LRRC37B_uc010csu.2_Missense_Mutation_p.M229I	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	229	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				ATTTGAGTATGGACACACTGT	0.498													45	25					0	0	0.000680045	0	0
SLFN12	55106	broad.mit.edu	37	17	33738894	33738894	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:33738894G>A	uc002hji.3	-	4	1577	c.1200C>T	c.(1198-1200)TTC>TTT	p.F400F	SLFN12_uc002hjj.3_Silent_p.F400F|SLFN12_uc010cts.2_Silent_p.F400F	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	400							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CATGTTGTAAGAACAGTTTTC	0.368													49	31					0	0	0.000781405	0	0
KRT24	192666	broad.mit.edu	37	17	38854792	38854792	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:38854792C>T	uc002hvd.2	-	7	1529	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	491	Tail.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				AAGTCTACCTCGTCCTTGACC	0.363													69	55					0	0	0.000781405	0	0
KRTAP17-1	83902	broad.mit.edu	37	17	39471884	39471884	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:39471884C>T	uc002hwj.2	-	1	64	c.19G>A	c.(19-21)GAC>AAC	p.D7N		NM_031964	NP_114170	Q9BYP8	KR171_HUMAN	keratin associated protein 17-1	7						intermediate filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GTGAAGCAGTCCCCCGGGCAG	0.537													13	5					0	0	0.00244969	0	0
SLC4A1	6521	broad.mit.edu	37	17	42338145	42338145	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:42338145C>T	uc002igf.3	-	5	356	c.207G>A	c.(205-207)AAG>AAA	p.K69K	SLC4A1_uc002igg.3_Silent_p.K69K	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	69	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GCTCCTGGTTCTTTTCGTCCA	0.617													15	8					0	0	0.00074312	0	0
HOXB5	3215	broad.mit.edu	37	17	46670776	46670776	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:46670776G>A	uc002inr.2	-	1	328	c.269C>T	c.(268-270)TCG>TTG	p.S90L		NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5	90						nucleus	sequence-specific DNA binding				0						GGAGCAGCTCGAAGCCGCTTG	0.726													12	1					0	0	0.000978159	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48212944	48212944	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:48212944C>T	uc002iqh.3	-	11	2377	c.2374G>A	c.(2374-2376)GAG>AAG	p.E792K		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	790	Potential.|Interacts with TGN38 (By similarity).				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						TCCATCTCCTCCTTTCTGGCC	0.632													10	3					0	0	0.000673444	0	0
RNF43	54894	broad.mit.edu	37	17	56435718	56435718	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:56435718G>A	uc002iwf.2	-	8	3375	c.1419C>T	c.(1417-1419)GGC>GGT	p.G473G	RNF43_uc010wnv.1_Silent_p.G432G|RNF43_uc002iwh.3_Silent_p.G473G|RNF43_uc002iwg.3_Silent_p.G473G|RNF43_uc010dcw.2_Silent_p.G346G	NM_017763	NP_060233	Q68DV7	RNF43_HUMAN	ring finger protein 43 precursor	473	Cytoplasmic (Potential).|Ser-rich.					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding			ovary(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CACTGGAAGAGCCATGACAGG	0.572													48	19					0	0	0.000781405	0	0
TEX14	56155	broad.mit.edu	37	17	56676785	56676785	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:56676785C>G	uc010dcz.1	-	14	2057	c.1939G>C	c.(1939-1941)GGA>CGA	p.G647R	TEX14_uc002iwr.1_Missense_Mutation_p.G641R|TEX14_uc002iws.1_Missense_Mutation_p.G641R|TEX14_uc010dda.1_Missense_Mutation_p.G421R	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	647						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAAGCAGCTCCTGGAGGCTCT	0.498													3	102					0	0	0.00024832	0	0
LLGL2	3993	broad.mit.edu	37	17	73567847	73567847	+	Missense_Mutation	SNP	C	T	T	rs150971482		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:73567847C>T	uc002joh.2	+	18	2430	c.2276C>T	c.(2275-2277)CCT>CTT	p.P759L	LLGL2_uc002joi.2_Missense_Mutation_p.P759L|LLGL2_uc010dgg.1_Missense_Mutation_p.P759L|LLGL2_uc002joj.2_Missense_Mutation_p.P748L|LLGL2_uc010wsd.1_Missense_Mutation_p.P386L	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	759	WD 11.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			ATGGATGAGCCTGTGCGGGCA	0.701													14	20					0	0	0.000422831	0	0
EVPL	2125	broad.mit.edu	37	17	74003217	74003217	+	Silent	SNP	G	A	A	rs144079186		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:74003217G>A	uc002jqi.2	-	22	6297	c.6069C>T	c.(6067-6069)TCC>TCT	p.S2023S	EVPL_uc010wss.1_Silent_p.S2045S|EVPL_uc010wst.1_Silent_p.S1493S	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	2023	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TGGGGGAGGCGGAGCGGTAGC	0.682													10	26					0	0	0.000442599	0	0
EVPL	2125	broad.mit.edu	37	17	74004741	74004741	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:74004741C>T	uc002jqi.2	-	22	4773	c.4545G>A	c.(4543-4545)CAG>CAA	p.Q1515Q	EVPL_uc010wss.1_Silent_p.Q1537Q|EVPL_uc010wst.1_Silent_p.Q985Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1515	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TGGTCTTCTCCTGCGATTTGG	0.597													59	54					0	0	0.000781405	0	0
EVPL	2125	broad.mit.edu	37	17	74006472	74006472	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:74006472C>T	uc002jqi.2	-	22	3042	c.2814G>A	c.(2812-2814)CAG>CAA	p.Q938Q	EVPL_uc010wss.1_Silent_p.Q960Q|EVPL_uc010wst.1_Silent_p.Q408Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	938	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GTTGGCTCCTCTGCGCCTCCA	0.662													27	23					0	0	0.001512	0	0
CCDC40	55036	broad.mit.edu	37	17	78055753	78055753	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:78055753G>A	uc010dht.2	+	12	1912	c.1885G>A	c.(1885-1887)GAT>AAT	p.D629N	CCDC40_uc002jxm.3_Missense_Mutation_p.D412N|CCDC40_uc002jxn.3_Missense_Mutation_p.D25N	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	629					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GAGGAAGACGGATGCTGCCAT	0.567													14	25					0	0	0.00244969	0	0
B3GNTL1	146712	broad.mit.edu	37	17	80972384	80972384	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr17:80972384C>T	uc002kgg.1	-	5	368	c.354G>A	c.(352-354)ATG>ATA	p.M118I	B3GNTL1_uc002kgf.1_5'UTR	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	118							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			GCTGGGGCATCATGACGTCAT	0.413													31	53					0	0	0.000692331	0	0
KIAA0802	23255	broad.mit.edu	37	18	8825578	8825578	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:8825578C>T	uc002knr.2	+	15	4212	c.4070C>T	c.(4069-4071)CCC>CTC	p.P1357L	KIAA0802_uc002knq.2_Missense_Mutation_p.P1316L|KIAA0802_uc002kns.2_Missense_Mutation_p.P697L	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1667											0						GGTGCTACACCCGTGTCGTCT	0.617													13	11					0	0	0.00185496	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887635	9887635	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:9887635G>A	uc002koi.3	+	2	1608	c.1159G>A	c.(1159-1161)GGT>AGT	p.G387S	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.G320S	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	387	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|19.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GCCCAAGGAGGGTGACATTCC	0.567													18	32					0	0	0.00152264	0	0
POTEC	388468	broad.mit.edu	37	18	14537894	14537894	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:14537894C>T	uc010dln.2	-	3	1170	c.716G>A	c.(715-717)GGA>GAA	p.G239E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	239	ANK 4.									skin(3)	3						AGTGGTATTTCCATACTCATC	0.383													35	76					0	0	0.00283554	0	0
RIOK3	8780	broad.mit.edu	37	18	21057187	21057187	+	Silent	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:21057187T>C	uc002kui.3	+	11	1916	c.1299T>C	c.(1297-1299)CCT>CCC	p.P433P	RIOK3_uc010dls.2_Silent_p.P433P|RIOK3_uc010xas.1_Silent_p.P417P|RIOK3_uc010xat.1_Silent_p.P177P	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	433	Protein kinase.				chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CTACCCACCCTCACGGCCTGG	0.418													3	74					0	0	0.00024832	0	0
DSG3	1830	broad.mit.edu	37	18	29041205	29041205	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:29041205G>A	uc002kws.2	+	8	938	c.829G>A	c.(829-831)GAA>AAA	p.E277K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	277	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGCACGTATTGAAGAAAATAT	0.328													7	16					0	0	0.00198382	0	0
DSG3	1830	broad.mit.edu	37	18	29046629	29046629	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:29046629G>A	uc002kws.2	+	11	1657	c.1548G>A	c.(1546-1548)CTG>CTA	p.L516L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	516	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTAGAACACTGAATAATAGAT	0.443													35	67					0	0	0.00283554	0	0
KIAA1632	57724	broad.mit.edu	37	18	43435618	43435618	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:43435618G>A	uc002lbm.2	-	43	7577	c.7477C>T	c.(7477-7479)CTT>TTT	p.L2493F		NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2493					autophagy						0						TGAACTGAAAGGAAGGCAGCC	0.453													13	11					0	0	0.000566183	0	0
DCC	1630	broad.mit.edu	37	18	50683833	50683833	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:50683833G>A	uc002lfe.1	+	8	1956	c.1369G>A	c.(1369-1371)GGG>AGG	p.G457R	DCC_uc010xdr.1_Missense_Mutation_p.G305R|DCC_uc010dpf.1_Missense_Mutation_p.G112R	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	457	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGAAGCGAAAGGGAACATTCA	0.498													26	41					0	0	0.000720815	0	0
STARD6	147323	broad.mit.edu	37	18	51855774	51855774	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:51855774G>A	uc010xdt.1	-	5	422	c.422C>T	c.(421-423)TCA>TTA	p.S141L		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	141	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		GATATAATTTGAAGATGGAGG	0.323													52	133					0	0	0.000781405	0	0
ALPK2	115701	broad.mit.edu	37	18	56184326	56184326	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:56184326G>A	uc002lhj.3	-	9	5968	c.5754C>T	c.(5752-5754)ATC>ATT	p.I1918I		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1918	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CCTCCGTGGCGATCTGACCAC	0.547													23	21					0	0	0.00278032	0	0
SERPINB2	5055	broad.mit.edu	37	18	61564961	61564961	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr18:61564961G>A	uc010xeu.1	+	6	751	c.418G>A	c.(418-420)GAA>AAA	p.E140K	SERPINB2_uc002ljo.2_Missense_Mutation_p.E140K|SERPINB2_uc010dqh.2_Missense_Mutation_p.E70K|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	140					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TGCTTTAAAGGAATATATTCG	0.378													21	36					0	0	0.000586117	0	0
DOT1L	84444	broad.mit.edu	37	19	2220136	2220136	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:2220136C>T	uc002lvb.3	+	23	2757	c.2721C>T	c.(2719-2721)CCC>CCT	p.P907P	DOT1L_uc002lvc.1_Silent_p.P201P|DOT1L_uc002lve.1_Silent_p.P201P	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	907						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCTGCAGCCCCGTGACCCCT	0.637													12	11					0	0	0.00074312	0	0
LRG1	116844	broad.mit.edu	37	19	4538062	4538062	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:4538062G>A	uc002mau.2	-	2	945	c.934C>T	c.(934-936)CGT>TGT	p.R312C	PLIN5_uc002mas.2_5'Flank|PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	312	LRRCT.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAAGCCAACGATAGAGGTCG	0.592													32	13					0	0	0.00209593	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841502	8841502	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:8841502G>A	uc010xkg.1	+	1	112	c.112G>A	c.(112-114)GGC>AGC	p.G38S		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						GTTTGTCATAGGCCTTCTGGG	0.547													24	14					0	0	0.000586117	0	0
MUC16	94025	broad.mit.edu	37	19	9061109	9061109	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:9061109C>T	uc002mkp.2	-	3	26541	c.26337G>A	c.(26335-26337)ACG>ACA	p.T8779T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8781	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGATCCTGTCGTGGTGAGGG	0.507													33	18					0	0	0.00111076	0	0
MUC16	94025	broad.mit.edu	37	19	9069754	9069754	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:9069754G>A	uc002mkp.2	-	3	17896	c.17692C>T	c.(17692-17694)CCA>TCA	p.P5898S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5900	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGAGTGTGGAAATCTCTGA	0.517													34	20					0	0	0.000692331	0	0
MUC16	94025	broad.mit.edu	37	19	9076887	9076887	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:9076887G>A	uc002mkp.2	-	3	10763	c.10559C>T	c.(10558-10560)TCA>TTA	p.S3520L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3521	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCAGGAGATGAAGTCTGAGA	0.507													44	40					0	0	0.00285205	0	0
MUC16	94025	broad.mit.edu	37	19	9091259	9091259	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:9091259G>A	uc002mkp.2	-	1	760	c.556C>T	c.(556-558)CCT>TCT	p.P186S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	186	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTTTTACAGGAATATATCTT	0.473													29	22					0	0	0.00127121	0	0
ZNF560	147741	broad.mit.edu	37	19	9579859	9579859	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:9579859C>T	uc002mlp.1	-	9	744	c.534G>A	c.(532-534)TGG>TGA	p.W178*	ZNF560_uc010dwr.1_Nonsense_Mutation_p.W72*	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	178	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GGCACATTTTCCATTCTGAAA	0.289													10	8					0	0	0.000673444	0	0
SLC44A2	57153	broad.mit.edu	37	19	10738467	10738467	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:10738467C>T	uc002mpf.2	+	3	295	c.156C>T	c.(154-156)ATC>ATT	p.I52I	SLC44A2_uc002mpe.3_Silent_p.I50I	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	52	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	CTGTAGGCATCATAGGTGAGT	0.587													28	16					0	0	0.001512	0	0
NWD1	284434	broad.mit.edu	37	19	16860679	16860679	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:16860679C>T	uc002neu.3	+	6	1648	c.1226C>T	c.(1225-1227)GCC>GTC	p.A409V	NWD1_uc002net.3_Missense_Mutation_p.A274V|NWD1_uc002nev.3_Missense_Mutation_p.A203V			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	409	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GTTCTGGACGCCCACACCAGG	0.582													15	12					0	0	0.000566183	0	0
CRTC1	23373	broad.mit.edu	37	19	18870915	18870915	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:18870915C>T	uc002nkb.3	+	8	851	c.763C>T	c.(763-765)CCC>TCC	p.P255S	CRTC1_uc010ebv.2_Missense_Mutation_p.P271S|CRTC1_uc010ebw.2_Missense_Mutation_p.P120S|CRTC1_uc002nkc.3_Missense_Mutation_p.P120S	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	255	Nuclear export signal (By similarity).				interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						CATCCACTTCCCCTCCCCGCT	0.672													20	4					0	0	0.00188189	0	0
ZNF208	7757	broad.mit.edu	37	19	22171613	22171613	+	Silent	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:22171613T>C	uc002nqp.2	-	2	251	c.102A>G	c.(100-102)TTA>TTG	p.L34L	ZNF208_uc002nqo.1_Silent_p.L34L|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGTAGTTCTCTAACATCACAT	0.363													40	33					0	0	0.00222228	0	0
ZNF676	163223	broad.mit.edu	37	19	22363024	22363024	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:22363024G>A	uc002nqs.1	-	3	1813	c.1495C>T	c.(1495-1497)CAT>TAT	p.H499Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	499	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCCAGTATGAATTATCTTA	0.383													15	13					0	0	0.00244969	0	0
ZBTB32	27033	broad.mit.edu	37	19	36205768	36205768	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:36205768G>A	uc002oay.2	+	2	450	c.240G>A	c.(238-240)GGG>GGA	p.G80G	ZBTB32_uc002oaz.2_RNA	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	80	BTB.				DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TTGTGTATGGGGAGAGTGTAG	0.632													22	62					0	0	0.000720815	0	0
MLL4	9757	broad.mit.edu	37	19	36223280	36223280	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:36223280C>T	uc010eei.2	+	29	5830	c.5830C>T	c.(5830-5832)CCT>TCT	p.P1944S		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1944					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGTGCCCCCTCCTACCTCAGT	0.672													8	9					0	0	0.000274275	0	0
PRODH2	58510	broad.mit.edu	37	19	36303435	36303435	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:36303435G>A	uc002obx.1	-	3	444	c.426C>T	c.(424-426)CTC>CTT	p.L142L		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	142					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGAGCCCAGGAGTCGCCGAG	0.647													15	11					0	0	0.000422831	0	0
NPHS1	4868	broad.mit.edu	37	19	36330412	36330412	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:36330412C>T	uc002oby.2	-	21	2913	c.2913G>A	c.(2911-2913)CAG>CAA	p.Q971Q	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	971	Fibronectin type-III.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCAGAACCTCTGTGGCAGGC	0.592													37	40					0	0	0.000781405	0	0
LGALS4	3960	broad.mit.edu	37	19	39293023	39293023	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:39293023G>A	uc002ojg.2	-	8	806	c.592C>T	c.(592-594)CTG>TTG	p.L198L		NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	198	Galectin 2.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CCTCCTTGCAGCCTCCCGAAA	0.478													67	43					0	0	0.000781405	0	0
FCGBP	8857	broad.mit.edu	37	19	40397968	40397968	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:40397968A>T	uc002omp.3	-	14	7007	c.6999T>A	c.(6997-6999)TGT>TGA	p.C2333*		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2333	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGTACTCACGACAGAAGTCCG	0.652													14	34					0	0	0.00121646	0	0
FCGBP	8857	broad.mit.edu	37	19	40433743	40433743	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:40433743C>T	uc002omp.3	-	2	534	c.526G>A	c.(526-528)GGG>AGG	p.G176R		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	176	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTCACTGACCCCTTCAGCGTG	0.567													19	40					0	0	0.00229938	0	0
CYP2F1	1572	broad.mit.edu	37	19	41628759	41628759	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:41628759G>A	uc002opu.1	+	7	911	c.855G>A	c.(853-855)ATG>ATA	p.M285I	CYP2F1_uc010xvw.1_Missense_Mutation_p.M71I|CYP2F1_uc010xvv.1_Missense_Mutation_p.M285I|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	285					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						ACTTCCACATGGATACCCTGC	0.567													10	23					0	0	0.00136819	0	0
PSG8	440533	broad.mit.edu	37	19	43258585	43258585	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:43258585G>A	uc002ouo.2	-	5	1241	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Silent_p.I220I|PSG8_uc002ouh.2_Silent_p.I381I|PSG8_uc010ein.2_Silent_p.I259I|PSG8_uc002ouj.3_Silent_p.I163I|PSG8_uc002ouk.3_Silent_p.I220I|PSG8_uc002oul.3_Silent_p.I381I|PSG8_uc002oum.3_Silent_p.I288I|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.I288I	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	381	Ig-like C2-type 3.					extracellular region					0		Prostate(69;0.00899)				TAATTTGGGGGATAAAGAGCT	0.458													74	153					0	0	0.000781405	0	0
PSG1	5669	broad.mit.edu	37	19	43382238	43382238	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:43382238C>T	uc002ovb.2	-	2	395	c.257G>A	c.(256-258)GGT>GAT	p.G86D	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.G86D|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.G86D|PSG1_uc010eio.1_Missense_Mutation_p.G86D|PSG1_uc002oux.1_Missense_Mutation_p.G15D|PSG1_uc002ouy.1_Missense_Mutation_p.G86D|PSG1_uc002ouz.1_Missense_Mutation_p.G86D|PSG1_uc002ova.1_Missense_Mutation_p.G86D|PSG1_uc002ovc.2_Missense_Mutation_p.G86D|PSG1_uc002ovd.1_Missense_Mutation_p.G86D	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	86	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				AATTATTTCACCGTCTACTAC	0.458													98	193					0	0	0.000781405	0	0
PSG2	5670	broad.mit.edu	37	19	43579720	43579720	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:43579720C>T	uc002ovr.2	-	3	588	c.495G>A	c.(493-495)GTG>GTA	p.V165V	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Silent_p.V165V|PSG2_uc010eiq.1_Silent_p.V165V|PSG2_uc002ovs.3_Silent_p.V165V|PSG2_uc002ovt.3_Silent_p.V165V	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	165	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				AGGTTAAGATCACAGTTTCCA	0.522													65	110					0	0	0.000781405	0	0
XRCC1	7515	broad.mit.edu	37	19	44047642	44047642	+	Missense_Mutation	SNP	G	A	A	rs137950555		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:44047642G>A	uc002owt.2	-	17	1924	c.1804C>T	c.(1804-1806)CCC>TCC	p.P602S	XRCC1_uc010xwp.1_Missense_Mutation_p.P571S	NM_006297	NP_006288	P18887	XRCC1_HUMAN	X-ray repair cross complementing protein 1	602	BRCT 2.				base-excision repair|single strand break repair	nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(2)|large_intestine(1)|prostate(1)|breast(1)	7		Prostate(69;0.0153)				GCCAGGGAGGGGTTGTCCATC	0.582								Other_BER_factors					25	47					0	0	0.00106085	0	0
ZNF230	7773	broad.mit.edu	37	19	44514759	44514759	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:44514759C>T	uc002oyb.1	+	5	819	c.568C>T	c.(568-570)CAC>TAC	p.H190Y		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	190	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CCAGAGAGTTCACTTGAGAGA	0.463													40	52					0	0	0.0025221	0	0
BCAM	4059	broad.mit.edu	37	19	45323972	45323972	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:45323972G>A	uc002ozu.2	+	14	1818	c.1774G>A	c.(1774-1776)GAG>AAG	p.E592K		NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	592	Cytoplasmic (Potential).				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GCCGCCAGGGGAGCCAGGGCT	0.592													9	14					0	0	0.00136819	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45895246	45895246	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:45895246G>A	uc002pbn.2	-	8	1784	c.1707C>T	c.(1705-1707)ATC>ATT	p.I569I	PPP1R13L_uc002pbm.2_Silent_p.I148I|PPP1R13L_uc002pbo.2_Silent_p.I569I	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	569	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		ATCCCTCAGTGATGGGGGACA	0.697													14	18					0	0	0.000422831	0	0
PRKD2	25865	broad.mit.edu	37	19	47178312	47178312	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:47178312G>A	uc002pfh.2	-	18	2744	c.2402C>T	c.(2401-2403)TCT>TTT	p.S801F	PRKD2_uc002pfd.2_Missense_Mutation_p.S175F|PRKD2_uc010eks.2_Missense_Mutation_p.S204F|PRKD2_uc010ekt.2_Missense_Mutation_p.S68F|PRKD2_uc002pfe.2_Missense_Mutation_p.S331F|PRKD2_uc002pff.2_Missense_Mutation_p.S321F|PRKD2_uc002pfg.2_Missense_Mutation_p.S644F|PRKD2_uc002pfi.2_Missense_Mutation_p.S801F|PRKD2_uc002pfj.2_Missense_Mutation_p.S801F|PRKD2_uc010xye.1_Missense_Mutation_p.S811F|PRKD2_uc002pfk.2_Missense_Mutation_p.S644F	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	801	Protein kinase.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		GTGGCTGAGAGATTTGTCCAC	0.562													6	12					0	0	0.000157383	0	0
DHX34	9704	broad.mit.edu	37	19	47856776	47856776	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:47856776C>T	uc010xyn.1	+	2	830	c.489C>T	c.(487-489)CCC>CCT	p.P163P	DHX34_uc010elc.1_Silent_p.P163P	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	163						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CAGCCCTCCCCATCGCCCAGT	0.647													21	36					0	0	0.00278032	0	0
DHX34	9704	broad.mit.edu	37	19	47858352	47858352	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:47858352C>T	uc010xyn.1	+	3	1103	c.762C>T	c.(760-762)TTC>TTT	p.F254F	DHX34_uc010elc.1_Silent_p.F254F	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	254	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		AGATTGTATTCCTGACAGTGG	0.582													29	40					0	0	0.001512	0	0
DHX34	9704	broad.mit.edu	37	19	47870310	47870310	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:47870310A>G	uc010xyn.1	+	7	2007	c.1666A>G	c.(1666-1668)ACC>GCC	p.T556A	DHX34_uc010elc.1_Missense_Mutation_p.T471A	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	556						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CAGCCTGGAAACCGCCATCCT	0.612													3	40					0	0	0.000602214	0	0
NUCB1	4924	broad.mit.edu	37	19	49416361	49416361	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:49416361G>A	uc002plb.3	+	6	646	c.574G>A	c.(574-576)GAG>AAG	p.E192K	NUCB1_uc002pla.2_Missense_Mutation_p.E192K|NUCB1_uc002plc.2_Missense_Mutation_p.E192K	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	192	Potential.|Potential.					ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		GCGTTATCTGGAGTCACTGGG	0.597													27	51					0	0	0.001512	0	0
RRAS	6237	broad.mit.edu	37	19	50139924	50139924	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:50139924G>A	uc002pop.1	-	4	450	c.405C>T	c.(403-405)TTC>TTT	p.F135F		NM_006270	NP_006261	P10301	RRAS_HUMAN	related RAS viral (r-ras) oncogene homolog	135					axon guidance|Ras protein signal transduction|synaptic transmission	intracellular|plasma membrane	GDP binding|GTP binding|GTPase activity|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00114)|GBM - Glioblastoma multiforme(134;0.0206)		ACACAACGGGGAAGTCGTCGC	0.607													9	25					0	0	0.000274275	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462696	50462696	+	Silent	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:50462696G>T	uc010ybh.1	-	5	1069	c.978C>A	c.(976-978)GCC>GCA	p.A326A	SIGLEC11_uc010ybi.1_Silent_p.A326A	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	326	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CTGAATCCCCGGCCCTTACCC	0.682													15	26					4.7546e-09	2.08884e-08	0.000422831	1	0
NKG7	4818	broad.mit.edu	37	19	51875654	51875654	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:51875654C>T	uc002pwj.2	-	1	307	c.136G>A	c.(136-138)GGG>AGG	p.G46R	NKG7_uc002pwk.2_Missense_Mutation_p.G46R	NM_005601	NP_005592	Q16617	NKG7_HUMAN	natural killer cell group 7 sequence	46						integral to plasma membrane				central_nervous_system(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000211)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCCCCATGCCCTGTTGGCCAG	0.587													28	60					0	0	0.00178596	0	0
ZNF347	84671	broad.mit.edu	37	19	53644356	53644356	+	Silent	SNP	G	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:53644356G>C	uc002qbb.1	-	5	1794	c.1725C>G	c.(1723-1725)GGC>GGG	p.G575G	ZNF347_uc010eql.1_Silent_p.G576G|ZNF347_uc002qbc.1_Silent_p.G576G	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	575	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TGAAGACCTTGCCACACTCAT	0.418													4	134					0	0	0.00024832	0	0
MIR517A	574479	broad.mit.edu	37	19	54215545	54215545	+	RNA	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:54215545G>A	hsa-mir-517a|MI0003161	+			c.24G>A			MIR519D_hsa-mir-519d|MI0003162_5'Flank																	0						CCCTCTAGATGGAAGCACTGT	0.269													20	49					0	0	0.00047179	0	0
CACNG7	59284	broad.mit.edu	37	19	54418697	54418697	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:54418697G>A	uc002qcr.1	+	3	377	c.362G>A	c.(361-363)GGC>GAC	p.G121D	CACNG7_uc010era.1_Missense_Mutation_p.G121D	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	121	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		AGCAACATCGGCCACATCCGC	0.597													23	25					0	0	0.000586117	0	0
CACNG6	59285	broad.mit.edu	37	19	54515287	54515287	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:54515287G>A	uc002qct.2	+	4	1217	c.627G>A	c.(625-627)CCG>CCA	p.P209P	CACNG6_uc002qcu.2_Silent_p.P163P|CACNG6_uc002qcv.2_Silent_p.P138P	NM_145814	NP_665813	Q9BXT2	CCG6_HUMAN	voltage-dependent calcium channel gamma-6	209						voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(2)	2	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.168)		AGCCTCCCCCGGCCCCACGCC	0.692													18	26					0	0	0.00229938	0	0
LILRA1	11024	broad.mit.edu	37	19	55107226	55107226	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:55107226G>A	uc002qgh.1	+	6	966	c.784G>A	c.(784-786)GAA>AAA	p.E262K	LILRA2_uc010yfg.1_Missense_Mutation_p.E260K|LILRA1_uc010yfh.1_Missense_Mutation_p.E262K	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	262	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TAAGGAGGGAGAACGTGACTT	0.612													29	52					0	0	0.00283554	0	0
LILRA1	11024	broad.mit.edu	37	19	55107841	55107841	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:55107841C>T	uc002qgh.1	+	7	1328	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	LILRA2_uc010yfg.1_Silent_p.F380F|LILRA1_uc010yfh.1_Silent_p.F382F	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	382	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		AGGCTGAATTCCCTATGAGTC	0.587													35	74					0	0	0.00128727	0	0
LILRB4	11006	broad.mit.edu	37	19	55179408	55179408	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:55179408C>A	uc002qgp.2	+	12	1647	c.1285C>A	c.(1285-1287)CCA>ACA	p.P429T	LILRB4_uc002qgq.2_Missense_Mutation_p.P428T|LILRB4_uc002qgr.2_Missense_Mutation_p.P471T|LILRB4_uc010ert.2_Missense_Mutation_p.P470T|LILRB4_uc010eru.2_Missense_Mutation_p.P459T	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	429	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TGAGCCTCCTCCATCCCAGGA	0.622													24	47					1.32143e-28	5.84623e-28	0.00106085	1	0
NLRP7	199713	broad.mit.edu	37	19	55451105	55451105	+	Missense_Mutation	SNP	G	A	A	rs143169084	byFrequency	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:55451105G>A	uc002qih.3	-	4	1158	c.1082C>T	c.(1081-1083)TCG>TTG	p.S361L	NLRP7_uc002qig.3_Missense_Mutation_p.S361L|NLRP7_uc002qii.3_Missense_Mutation_p.S361L|NLRP7_uc010esk.2_Missense_Mutation_p.S361L|NLRP7_uc010esl.2_Missense_Mutation_p.S389L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	361	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CGCGGGGGCCGAGCCCAGCTG	0.632													18	27					0	0	0.00229938	0	0
NLRP8	126205	broad.mit.edu	37	19	56499263	56499263	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:56499263C>T	uc002qmh.2	+	10	3202	c.3131C>T	c.(3130-3132)TCC>TTC	p.S1044F	NLRP8_uc010etg.2_Missense_Mutation_p.S1025F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	1044						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GACTGCCTATCCCAGATTAAT	0.502													18	35					0	0	0.000958276	0	0
ZNF71	58491	broad.mit.edu	37	19	57133224	57133224	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:57133224A>T	uc002qnm.3	+	3	807	c.569A>T	c.(568-570)GAC>GTC	p.D190V		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	190	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		GCCTGCGGGGACTGCGGCAAG	0.637													22	22					0	0	0.00152264	0	0
PEG3	5178	broad.mit.edu	37	19	57328178	57328178	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr19:57328178G>A	uc002qnu.2	-	7	1983	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.F515F|PEG3_uc002qnv.2_Silent_p.F544F|PEG3_uc002qnw.2_Silent_p.F420F|PEG3_uc002qnx.2_Silent_p.F418F|PEG3_uc010etr.2_Silent_p.F544F	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	544					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGCTAGGCATGAAGGCTTCCT	0.453													47	81					0	0	0.000781405	0	0
FAM49A	81553	broad.mit.edu	37	2	16742506	16742506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:16742506G>A	uc010exm.1	-	7	701	c.553C>T	c.(553-555)CGA>TGA	p.R185*	FAM49A_uc002rck.1_Nonsense_Mutation_p.R185*	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	185						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			AGGGACATTCGATTGGCCATC	0.403													46	80					0	0	0.000781405	0	0
PPM1G	5496	broad.mit.edu	37	2	27605342	27605342	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:27605342C>T	uc002rkl.2	-	9	1438	c.1331_splice	c.e9+1	p.W444_splice	ZNF513_uc002rkj.2_5'Flank|ZNF513_uc002rkk.2_5'Flank|PPM1G_uc002rkm.2_Splice_Site_p.W225_splice	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G						cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CCAGTGCTCACCAGATGCCAT	0.512													39	80					0	0	0.00148497	0	0
BIRC6	57448	broad.mit.edu	37	2	32724761	32724761	+	Silent	SNP	T	C	C	rs137947891		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:32724761T>C	uc010ezu.2	+	46	8750	c.8616T>C	c.(8614-8616)ACT>ACC	p.T2872T		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2872					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ACTATATCACTTGCTCAGACA	0.433													62	133					0	0	0.000781405	0	0
BIRC6	57448	broad.mit.edu	37	2	32724764	32724764	+	Silent	SNP	C	T	T	rs111947829		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:32724764C>T	uc010ezu.2	+	46	8753	c.8619C>T	c.(8617-8619)TGC>TGT	p.C2873C		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2873					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ATATCACTTGCTCAGACAAAG	0.433													63	136					0	0	0.000781405	0	0
REL	5966	broad.mit.edu	37	2	61148946	61148946	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:61148946G>C	uc002sam.1	+	11	1360	c.1136G>C	c.(1135-1137)GGG>GCG	p.G379A	REL_uc002san.1_Missense_Mutation_p.G347A	NM_002908	NP_002899	Q04864	REL_HUMAN	v-rel reticuloendotheliosis viral oncogene	379					positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	all_hematologic(2;0.0797)	Ovarian(717;0.0728)	LUSC - Lung squamous cell carcinoma(5;6.2e-08)|Lung(5;1.65e-06)|Epithelial(17;0.064)|all cancers(80;0.221)			ATGCCTACAGGGGTTTCAAGT	0.408			A		Hodgkin Lymphoma								3	73					0	0	6.4e-05	0	0
PROKR1	10887	broad.mit.edu	37	2	68873196	68873196	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:68873196C>T	uc010yqj.1	+	1	243	c.243C>T	c.(241-243)TTC>TTT	p.F81F	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	81	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						TTGGAAACTTCATCTTTATCG	0.532													37	85					0	0	0.00148497	0	0
DYSF	8291	broad.mit.edu	37	2	71743372	71743372	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:71743372G>A	uc002sie.2	+	8	1231	c.855G>A	c.(853-855)ACG>ACA	p.T285T	DYSF_uc010feg.2_Silent_p.T316T|DYSF_uc010feh.2_Silent_p.T285T|DYSF_uc002sig.3_Silent_p.T285T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.T285T|DYSF_uc010fef.2_Silent_p.T316T|DYSF_uc010fei.2_Silent_p.T316T|DYSF_uc010fek.2_Silent_p.T317T|DYSF_uc010fej.2_Silent_p.T286T|DYSF_uc010fel.2_Silent_p.T286T|DYSF_uc010feo.2_Silent_p.T317T|DYSF_uc010fem.2_Silent_p.T286T|DYSF_uc010fen.2_Silent_p.T317T|DYSF_uc002sif.2_Silent_p.T286T	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	285	Cytoplasmic (Potential).|C2 2.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TCTTTATCACGGTATGTCTCA	0.398													8	11					0	0	0.000274275	0	0
DYSF	8291	broad.mit.edu	37	2	71895914	71895914	+	Missense_Mutation	SNP	C	T	T	rs145832952		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:71895914C>T	uc002sie.2	+	48	5747	c.5371C>T	c.(5371-5373)CCG>TCG	p.P1791S	DYSF_uc010feg.2_Missense_Mutation_p.P1822S|DYSF_uc010feh.2_Missense_Mutation_p.P1798S|DYSF_uc002sig.3_Missense_Mutation_p.P1777S|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1812S|DYSF_uc010fef.2_Missense_Mutation_p.P1829S|DYSF_uc010fei.2_Missense_Mutation_p.P1808S|DYSF_uc010fek.2_Missense_Mutation_p.P1809S|DYSF_uc010fej.2_Missense_Mutation_p.P1799S|DYSF_uc010fel.2_Missense_Mutation_p.P1778S|DYSF_uc010feo.2_Missense_Mutation_p.P1823S|DYSF_uc010fem.2_Missense_Mutation_p.P1813S|DYSF_uc010fen.2_Missense_Mutation_p.P1830S|DYSF_uc002sif.2_Missense_Mutation_p.P1792S|DYSF_uc010yqy.1_Missense_Mutation_p.P672S|DYSF_uc010yqz.1_Missense_Mutation_p.P552S	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1791	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding	p.P1791S(1)		ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGACCTATTTCCGAAGGCCCT	0.532													7	8					0	0	0.00198382	0	0
KDM3A	55818	broad.mit.edu	37	2	86711263	86711263	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:86711263G>T	uc002sri.3	+	19	3403	c.3076G>T	c.(3076-3078)GGA>TGA	p.G1026*	KDM3A_uc010ytj.1_Nonsense_Mutation_p.G1026*|KDM3A_uc010ytk.1_Nonsense_Mutation_p.G974*	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	1026					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						CTTCTGGGATGGATTTGAAGA	0.453													25	22					1.96895e-08	8.63814e-08	0.00278032	1	0
SMYD1	150572	broad.mit.edu	37	2	88402627	88402627	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:88402627G>A	uc002ssr.2	+	7	941	c.939G>A	c.(937-939)TTG>TTA	p.L313L	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Silent_p.L9L	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	313					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGGATACATTGGAAAAGATAG	0.458													36	55					0	0	0.00148497	0	0
ANKRD36	375248	broad.mit.edu	37	2	97849224	97849224	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:97849224G>A	uc010yva.1	+	27	2110	c.1866G>A	c.(1864-1866)AAG>AAA	p.K622K	ANKRD36_uc010fic.2_Silent_p.K341K|ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_Intron	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	622											0						CGGCCTGGAAGGTAGTTACTC	0.274													3	7					0	0	0.000602214	0	0
ZAP70	7535	broad.mit.edu	37	2	98354284	98354284	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:98354284T>C	uc002syd.1	+	12	1754	c.1547T>C	c.(1546-1548)TTC>TCC	p.F516S	ZAP70_uc002sye.1_Missense_Mutation_p.F406S|ZAP70_uc002syf.1_Missense_Mutation_p.F209S	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	516	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						TTCCGCAAGTTCTCCAGCCGC	0.642													33	60					0	0	0.00111076	0	0
VWA3B	200403	broad.mit.edu	37	2	98804458	98804458	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:98804458C>T	uc002syo.2	+	10	1596	c.1332C>T	c.(1330-1332)GTC>GTT	p.V444V	VWA3B_uc010yvh.1_Silent_p.V294V|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_Intron|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Silent_p.V444V|VWA3B_uc002syn.1_Intron|VWA3B_uc010yvi.1_Silent_p.V101V	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	444										ovary(3)|large_intestine(2)|skin(1)	6						AGAAGACAGTCCATGCAAAAT	0.483													26	23					0	0	0.000586117	0	0
IL1R2	7850	broad.mit.edu	37	2	102638686	102638686	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:102638686C>T	uc002tbm.2	+	6	955	c.726C>T	c.(724-726)CCC>CCT	p.P242P	IL1R2_uc002tbn.2_Silent_p.P242P|IL1R2_uc002tbo.1_Silent_p.P242P	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	242	Extracellular (Potential).|Ig-like C2-type 3.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	TCATTTCCCCCCTCAAGACCA	0.498													40	110					0	0	0.00195071	0	0
RGPD3	653489	broad.mit.edu	37	2	107040826	107040826	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:107040826C>T	uc010ywi.1	-	20	3654	c.3597G>A	c.(3595-3597)AAG>AAA	p.K1199K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1199					intracellular transport		binding			ovary(1)	1						TCAGTCCACTCTTCATTTCTT	0.433													59	81					0	0	0.000781405	0	0
RGPD3	653489	broad.mit.edu	37	2	107049570	107049570	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:107049570T>G	uc010ywi.1	-	16	2434	c.2377A>C	c.(2377-2379)AGT>CGT	p.S793R		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	793					intracellular transport		binding			ovary(1)	1						ACCTTGTAACTTTTACTTGGT	0.299													11	138					0	0	0.00229938	0	0
MERTK	10461	broad.mit.edu	37	2	112755015	112755015	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:112755015C>T	uc002thk.1	+	10	1688	c.1566C>T	c.(1564-1566)TCC>TCT	p.S522S	MERTK_uc002thl.1_Silent_p.S346S	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	522	Helical; (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TATACATCTCCTTGGCCATCA	0.448													19	41					0	0	0.00074312	0	0
POTEF	728378	broad.mit.edu	37	2	130832816	130832816	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:130832816C>T	uc010fmh.2	-	17	2629	c.2229G>A	c.(2227-2229)ATG>ATA	p.M743I		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	743	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						TGCCCCCCATCATGCCCTGCT	0.617													20	33					0	0	0.00106085	0	0
LRP1B	53353	broad.mit.edu	37	2	141264470	141264470	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:141264470C>T	uc002tvj.1	-	53	9388	c.8416G>A	c.(8416-8418)GAT>AAT	p.D2806N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2806	Extracellular (Potential).|LDL-receptor class A 18.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCATTTTCATCACATGTATTA	0.378										TSP Lung(27;0.18)			21	55					0	0	0.00047179	0	0
LRP1B	53353	broad.mit.edu	37	2	141739790	141739790	+	Silent	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:141739790T>C	uc002tvj.1	-	18	3798	c.2826A>G	c.(2824-2826)AGA>AGG	p.R942R	LRP1B_uc010fnl.1_Silent_p.R124R	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	942	Extracellular (Potential).|LDL-receptor class A 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACAGCCATGCTCTGGGAATGC	0.418										TSP Lung(27;0.18)			7	62					0	0	0.000274275	0	0
MBD5	55777	broad.mit.edu	37	2	149226884	149226884	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:149226884C>T	uc002twm.3	+	9	2360	c.1372C>T	c.(1372-1374)CAA>TAA	p.Q458*	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Nonsense_Mutation_p.Q458*|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	458						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GGCATCGCCCCAAAGATCACG	0.512													10	11					0	0	0.000978159	0	0
GALNT5	11227	broad.mit.edu	37	2	158157217	158157217	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:158157217C>T	uc002tzg.2	+	7	2400	c.2145C>T	c.(2143-2145)ATC>ATT	p.I715I	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	715	Catalytic subdomain B.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						AAATTGAGATCATTCCCTGCT	0.438													32	70					0	0	0.000814825	0	0
SCN1A	6323	broad.mit.edu	37	2	166895947	166895947	+	Missense_Mutation	SNP	G	A	A	rs121918784		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:166895947G>A	uc010zcz.1	-	14	2560	c.2542C>T	c.(2542-2544)CGT>TGT	p.R848C	SCN1A_uc002udo.3_Missense_Mutation_p.R728C|SCN1A_uc010fpk.2_Missense_Mutation_p.R700C	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	859	Helical; Voltage-sensor; Name=S4 of repeat II; (By similarity).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CGAAATGAACGGAGAACAGAT	0.363													12	27					0	0	0.00244969	0	0
XIRP2	129446	broad.mit.edu	37	2	167992518	167992518	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:167992518G>A	uc002udx.2	+	2	526	c.508G>A	c.(508-510)GAA>AAA	p.E170K	XIRP2_uc010fpn.2_Missense_Mutation_p.E170K|XIRP2_uc010fpo.2_Missense_Mutation_p.E170K|XIRP2_uc010fpp.2_Missense_Mutation_p.E170K|XIRP2_uc002udy.2_5'UTR	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAAAGGCAAGGAAACATCTTT	0.438													24	48					0	0	0.000586117	0	0
XIRP2	129446	broad.mit.edu	37	2	168100889	168100889	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:168100889G>A	uc002udx.2	+	8	3005	c.2987G>A	c.(2986-2988)GGA>GAA	p.G996E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G821E|XIRP2_uc010fpq.2_Missense_Mutation_p.G774E|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	821					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATCCCCTTGGAAAATATCAT	0.403													22	30					0	0	0.000586117	0	0
MYO3B	140469	broad.mit.edu	37	2	171259451	171259451	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:171259451C>T	uc002ufy.2	+	19	2366	c.2223C>T	c.(2221-2223)ATC>ATT	p.I741I	MYO3B_uc002ufv.2_Silent_p.I728I|MYO3B_uc010fqb.1_Silent_p.I728I|MYO3B_uc002ufz.2_Silent_p.I741I|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	741	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCATAAACATCGCCAATGAGC	0.408													15	47					0	0	0.00244969	0	0
CHRNA1	1134	broad.mit.edu	37	2	175613332	175613332	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:175613332C>T	uc002ujd.2	-	9	1371	c.1293G>A	c.(1291-1293)ATG>ATA	p.M431I	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Missense_Mutation_p.M406I	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	431	Cytoplasmic.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGTCTGACTTCATGGTCTCTG	0.383											OREG0015079	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	39					0	0	0.00152264	0	0
HOXD3	3232	broad.mit.edu	37	2	177036457	177036457	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:177036457G>A	uc002ukt.1	+	3	930	c.754G>A	c.(754-756)GAC>AAC	p.D252N		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	252	Homeobox.				anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		GTACAAGAAGGACCAGAAGGC	0.662													15	44					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179411964	179411964	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179411964C>T	uc010zfg.1	-	289	86808	c.86584G>A	c.(86584-86586)GAA>AAA	p.E28862K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E22557K|TTN_uc010zfi.1_Missense_Mutation_p.E22490K|TTN_uc010zfj.1_Missense_Mutation_p.E22365K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29789							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGGGTTCTTCCCAACGAATA	0.423													63	85					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179428836	179428836	+	Silent	SNP	C	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179428836C>A	uc010zfg.1	-	275	74543	c.74319G>T	c.(74317-74319)CGG>CGT	p.R24773R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R18468R|TTN_uc010zfi.1_Silent_p.R18401R|TTN_uc010zfj.1_Silent_p.R18276R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25700							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCATCAGTCCGTATACAGT	0.393													86	144					7.61764e-41	3.37966e-40	0.000781405	1	0
TTN	7273	broad.mit.edu	37	2	179431857	179431857	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179431857C>T	uc010zfg.1	-	275	71522	c.71298G>A	c.(71296-71298)TGG>TGA	p.W23766*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W17461*|TTN_uc010zfi.1_Nonsense_Mutation_p.W17394*|TTN_uc010zfj.1_Nonsense_Mutation_p.W17269*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24693							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACAACAGTCCAGGCAAGTC	0.398													37	73					0	0	0.000814825	0	0
TTN	7273	broad.mit.edu	37	2	179474029	179474029	+	Silent	SNP	G	A	A	rs144507270	by1000genomes	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179474029G>A	uc010zfg.1	-	222	44528	c.44304C>T	c.(44302-44304)GTC>GTT	p.V14768V	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V8463V|TTN_uc010zfi.1_Silent_p.V8396V|TTN_uc010zfj.1_Silent_p.V8271V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15695							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGAATCTCGGACGCGTAGCT	0.453													11	25					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179498381	179498381	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179498381C>T	uc010zfg.1	-	181	35225	c.35001G>A	c.(34999-35001)GTG>GTA	p.V11667V	TTN_uc010zfh.1_Silent_p.V5362V|TTN_uc010zfi.1_Silent_p.V5295V|TTN_uc010zfj.1_Silent_p.V5170V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12594							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R11667K(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATGTAATTTCACAGTGAAGT	0.338													14	21					0	0	0.00244969	0	0
TTN	7273	broad.mit.edu	37	2	179517007	179517007	+	Silent	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179517007T>C	uc010zfg.1	-	157	32117	c.31893A>G	c.(31891-31893)GAA>GAG	p.E10631E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_5'Flank|TTN_uc002umx.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11558							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGGTGGCACTTCAGGCTTTT	0.378													29	252					0	0	0.0024448	0	0
TTN	7273	broad.mit.edu	37	2	179529579	179529579	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179529579C>T	uc010zfk.1	-	11	1104	c.556G>A	c.(556-558)GTG>ATG	p.V186M	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11396							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGACTTGTACCTTTAACTGAT	0.378													11	8					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179553407	179553407	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179553407C>T	uc010zfg.1	-	123	28686	c.28462G>A	c.(28462-28464)GAA>AAA	p.E9488K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6149K|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10415							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATATACCTTCGTGCCGCGTG	0.398													17	56					0	0	0.000566183	0	0
TTN	7273	broad.mit.edu	37	2	179586730	179586730	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179586730C>T	uc010zfg.1	-	75	19152	c.18928G>A	c.(18928-18930)GAG>AAG	p.E6310K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E2971K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7237							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGACGGATCTCCTTGTTATCT	0.413													62	118					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179590565	179590565	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179590565G>A	uc010zfg.1	-	67	16976	c.16752C>T	c.(16750-16752)ATC>ATT	p.I5584I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I2245I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6511							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTATTCACCGATGTCTGAAG	0.388													34	51					0	0	0.000953801	0	0
TTN	7273	broad.mit.edu	37	2	179596099	179596099	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179596099C>T	uc010zfg.1	-	56	13886	c.13662G>A	c.(13660-13662)GGG>GGA	p.G4554G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G1215G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5481							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGACATATTTCCCATCATGCT	0.408													76	164					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179644115	179644115	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:179644115T>A	uc010zfg.1	-	23	4028	c.3804A>T	c.(3802-3804)GAA>GAT	p.E1268D	TTN_uc010zfh.1_Missense_Mutation_p.E1222D|TTN_uc010zfi.1_Missense_Mutation_p.E1222D|TTN_uc010zfj.1_Missense_Mutation_p.E1222D|TTN_uc002unb.2_Missense_Mutation_p.E1268D|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1268							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAGAAGTTCTTCTAATGTAG	0.299													11	22					0	0	0.000673444	0	0
PDE1A	5136	broad.mit.edu	37	2	183129112	183129112	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:183129112C>T	uc002uos.2	-	3	215	c.131G>A	c.(130-132)AGA>AAA	p.R44K	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.R44K|PDE1A_uc010zfq.1_Missense_Mutation_p.R44K|PDE1A_uc002uor.2_Missense_Mutation_p.R28K|PDE1A_uc002uov.1_RNA	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	44	Calmodulin-binding (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			AACATCACCTCTTTCCAGCTG	0.363													29	43					0	0	0.001512	0	0
CALCRL	10203	broad.mit.edu	37	2	188216985	188216985	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:188216985G>A	uc002upv.3	-	13	1532	c.984C>T	c.(982-984)TCC>TCT	p.S328S	CALCRL_uc010frt.2_Silent_p.S328S	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	328	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			TGTACAGATTGGATTCCGCTT	0.393													14	31					0	0	0.000422831	0	0
COL5A2	1290	broad.mit.edu	37	2	189927735	189927735	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:189927735C>T	uc002uqk.2	-	28	2198	c.1923_splice	c.e28+1	p.R641_splice	COL5A2_uc010frx.2_Splice_Site_p.R217_splice	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein						axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TGTATATTTACCCTCTGCCCA	0.368													37	67					0	0	0.00128727	0	0
DNAH7	56171	broad.mit.edu	37	2	196661442	196661442	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:196661442A>G	uc002utj.3	-	56	10474	c.10373T>C	c.(10372-10374)CTT>CCT	p.L3458P	DNAH7_uc002uti.3_5'Flank	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3458	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TAAAGAGCTAAGTTTTGATCC	0.348													5	42					0	0	0.000602214	0	0
DNAH7	56171	broad.mit.edu	37	2	196891526	196891526	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:196891526C>T	uc002utj.3	-	7	726	c.625G>A	c.(625-627)GAA>AAA	p.E209K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	209	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCTCTCATTTCATCAGATAAT	0.338													17	32					0	0	0.000958276	0	0
HECW2	57520	broad.mit.edu	37	2	197184087	197184087	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:197184087C>T	uc002utm.1	-	9	1710	c.1527G>A	c.(1525-1527)GAG>GAA	p.E509E	HECW2_uc002utl.1_Silent_p.E153E	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	509					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CAGGGTTGTCCTCCAGCTTTG	0.517													12	28					0	0	0.000978159	0	0
STRADB	55437	broad.mit.edu	37	2	202343314	202343314	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:202343314C>T	uc002uyd.3	+	10	1425	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	354	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						GCAACAAGATCCTGAGAAAAG	0.363													8	33					0	0	0.000274275	0	0
TMEM169	92691	broad.mit.edu	37	2	216965042	216965042	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:216965042C>T	uc010zjr.1	+	4	997	c.671C>T	c.(670-672)TCC>TTC	p.S224F	TMEM169_uc010zjs.1_Missense_Mutation_p.S224F|TMEM169_uc002vfw.2_Missense_Mutation_p.S224F|TMEM169_uc002vfv.3_Missense_Mutation_p.S224F	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	224	Helical; (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATGGCTTCTTCCCTCGGCCTC	0.562													35	89					0	0	0.00111076	0	0
SLC11A1	6556	broad.mit.edu	37	2	219249953	219249953	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:219249953G>A	uc002vhv.2	+	4	697	c.357G>A	c.(355-357)AAG>AAA	p.K119K	SLC11A1_uc010zkb.1_Silent_p.K119K|SLC11A1_uc010fvp.1_Silent_p.K119K|SLC11A1_uc010fvq.1_Silent_p.K52K|SLC11A1_uc010zkc.1_Silent_p.K52K|SLC11A1_uc002vhu.1_5'UTR|SLC11A1_uc002vhw.2_5'UTR|SLC11A1_uc010fvr.2_5'Flank	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	119	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGACAGGCAAGGACTTGGGCG	0.622													15	60					0	0	0.000308642	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882709	228882709	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:228882709C>T	uc002vpq.2	-	7	2908	c.2861G>A	c.(2860-2862)GGA>GAA	p.G954E	SPHKAP_uc002vpp.2_Missense_Mutation_p.G954E|SPHKAP_uc010zlx.1_Missense_Mutation_p.G954E	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	954						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGTTGTTTTCCACTGGAGTT	0.493													29	54					0	0	0.0024448	0	0
AGAP1	116987	broad.mit.edu	37	2	237028968	237028969	+	Silent	DNP	CC	AT	AT			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:237028968_237028969CC>AT	uc002vvs.2	+	17	2842_2843	c.2247_2248CC>AT	c.(2245-2250)ATCCTG>ATATTG	p.749_750IL>IL	AGAP1_uc002vvt.2_Silent_p.696_697IL>IL	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	749_750					protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GGACGGCCATCCTGCTGCTGGC	0.713													21	23					0	0	6.4e-05	0	0
PRR21	643905	broad.mit.edu	37	2	240981381	240981381	+	Missense_Mutation	SNP	G	A	A	rs143332815		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:240981381G>A	uc010zod.1	-	1	1019	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	340								p.S340L(2)		ovary(1)|skin(1)	2						AGACTTGGATGAAGAGGCATG	0.587													42	57					0	0	0.00170553	0	0
C2orf54	79919	broad.mit.edu	37	2	241831074	241831074	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr2:241831074C>T	uc002wae.3	-	2	780	c.621G>A	c.(619-621)AGG>AGA	p.R207R	C2orf54_uc002wac.2_Silent_p.R39R|C2orf54_uc002wad.2_Silent_p.R58R	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	207											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		CCCCAAGCTTCCTTCTCACCA	0.652													24	29					0	0	0.000586117	0	0
MRPS26	64949	broad.mit.edu	37	20	3026876	3026876	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:3026876C>T	uc002whs.2	+	1	202	c.162C>T	c.(160-162)TTC>TTT	p.F54F		NM_030811	NP_110438	Q9BYN8	RT26_HUMAN	mitochondrial ribosomal protein S26 precursor	54					DNA damage response, detection of DNA damage	mitochondrial small ribosomal subunit					0						CGGAGTTCTTCGTGCTGATGG	0.711													14	24					0	0	0.000422831	0	0
LRRN4	164312	broad.mit.edu	37	20	6022124	6022124	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:6022124C>T	uc002wmo.2	-	5	1991	c.1767G>A	c.(1765-1767)ACG>ACA	p.T589T		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	589	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(3)	3						CCGTGGTCTCCGTCACCCCCT	0.711													20	32					0	0	0.00121646	0	0
PLCB4	5332	broad.mit.edu	37	20	9434089	9434089	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:9434089G>A	uc002wnf.2	+	31	3076	c.2940G>A	c.(2938-2940)GAG>GAA	p.E980E	PLCB4_uc010gbw.1_Silent_p.E980E|PLCB4_uc010gbx.2_Silent_p.E992E|PLCB4_uc002wne.2_Silent_p.E980E|PLCB4_uc002wnh.2_Silent_p.E827E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	980					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAATCCTAGAGAAGGCAATGA	0.388													19	23					0	0	0.00121646	0	0
SEL1L2	80343	broad.mit.edu	37	20	13869134	13869134	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:13869134C>T	uc010gcf.2	-	6	656	c.574G>A	c.(574-576)GGA>AGA	p.G192R	SEL1L2_uc002woq.3_Missense_Mutation_p.G53R|SEL1L2_uc010zrl.1_Missense_Mutation_p.G192R|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	192	Extracellular (Potential).|Sel1-like 3.					integral to membrane	binding			ovary(2)	2						ATTCCTATTCCATAAGAAGAC	0.274													17	34					0	0	0.00188189	0	0
C20orf26	26074	broad.mit.edu	37	20	20051576	20051576	+	Silent	SNP	C	T	T	rs35865562		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:20051576C>T	uc002wru.2	+	3	298	c.222C>T	c.(220-222)CGC>CGT	p.R74R	C20orf26_uc010gcw.1_Silent_p.P28P|C20orf26_uc010zse.1_Silent_p.P74P|C20orf26_uc010zsf.1_Silent_p.P74P	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	74										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TGGACTACCCCAACTGGAATG	0.502													18	38					0	0	0.00074312	0	0
NKX2-2	4821	broad.mit.edu	37	20	21494276	21494276	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:21494276G>A	uc002wsi.2	-	1	389	c.32C>T	c.(31-33)TCG>TTG	p.S11L		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	11					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GTCCTTGACCGAAAACCCCGT	0.567													27	43					0	0	0.00283554	0	0
PAX1	5075	broad.mit.edu	37	20	21687290	21687290	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:21687290G>A	uc002wsj.2	+	2	555	c.501G>A	c.(499-501)GGG>GGA	p.G167G	PAX1_uc010zsl.1_Silent_p.G167G|PAX1_uc010zsm.1_Silent_p.G143G	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	167	Paired.				regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						CCATCGGGGGGAGCAAGCCCC	0.652													22	19					0	0	0.00152264	0	0
DEFB119	245932	broad.mit.edu	37	20	29965177	29965177	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:29965177C>T	uc002wvt.2	-	2	247	c.127G>A	c.(127-129)GAA>AAA	p.E43K	DEFB119_uc002wvs.2_3'UTR	NM_153289	NP_695021	Q8N690	DB119_HUMAN	defensin, beta 119 isoform a precursor	43					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TAGGGCTGTTCGTTCTTTTTG	0.433													52	87					0	0	0.000781405	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32212593	32212593	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:32212593G>C	uc002wzg.1	+	7	1280	c.743G>C	c.(742-744)AGA>ACA	p.R248T	CBFA2T2_uc010zug.1_Missense_Mutation_p.R22T|CBFA2T2_uc002wze.1_Missense_Mutation_p.R239T|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.R219T|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	248						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						AGTTTTGATAGAGACACAATT	0.428													3	112					0	0	0.00024832	0	0
FAM83C	128876	broad.mit.edu	37	20	33876313	33876313	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:33876313C>T	uc010zux.1	-	3	875	c.757G>A	c.(757-759)GAG>AAG	p.E253K	FAM83C_uc002xcb.1_Missense_Mutation_p.E77K	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	253										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			ACGAACTTCTCCAGGGCCTGC	0.632													17	30					0	0	0.00121646	0	0
ACTR5	79913	broad.mit.edu	37	20	37400315	37400315	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:37400315G>A	uc002xjd.2	+	9	1705	c.1680G>A	c.(1678-1680)AAG>AAA	p.K560K		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	560					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				ATGAAGAAAAGGGAGGAGAGT	0.552													21	35					0	0	0.00106085	0	0
FAM83D	81610	broad.mit.edu	37	20	37576532	37576532	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:37576532G>T	uc002xjg.2	+	3	796	c.755G>T	c.(754-756)CGG>CTG	p.R252L		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	222					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				ATGACAGTTCGGACTATCACA	0.413													5	103					0.00116845	0.00509779	0.00116845	1	0
PTPRT	11122	broad.mit.edu	37	20	40739014	40739014	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:40739014G>A	uc002xkg.2	-	23	3397	c.3213C>T	c.(3211-3213)TTC>TTT	p.F1071F	PTPRT_uc010ggj.2_Silent_p.F1090F|PTPRT_uc010ggi.2_Silent_p.F274F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1071	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGGGGTTGAGGAACTTGACCT	0.488													17	27					0	0	0.00074312	0	0
PTPRT	11122	broad.mit.edu	37	20	40980844	40980844	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:40980844C>T	uc002xkg.2	-	10	1826	c.1642G>A	c.(1642-1644)GAA>AAA	p.E548K	PTPRT_uc010ggj.2_Missense_Mutation_p.E548K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	548	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGTGGGTTTCATTCCGGAGC	0.572													32	58					0	0	0.00283554	0	0
PCIF1	63935	broad.mit.edu	37	20	44569573	44569573	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:44569573C>T	uc002xqs.2	+	6	827	c.513C>T	c.(511-513)CCC>CCT	p.P171P		NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	171						nucleus				skin(1)	1						TCCTACGACCCACTGAGTGAG	0.602													15	21					0	0	0.00244969	0	0
EYA2	2139	broad.mit.edu	37	20	45808552	45808552	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:45808552C>T	uc002xsm.2	+	13	1679	c.1305C>T	c.(1303-1305)ATC>ATT	p.I435I	EYA2_uc010ghp.2_Intron|EYA2_uc002xsn.2_Silent_p.I440I|EYA2_uc002xso.2_Silent_p.I435I|EYA2_uc002xsp.2_Silent_p.I435I|EYA2_uc002xsq.2_Silent_p.I405I	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	435					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				TAAACCTCATCAACTCCCGGC	0.557													7	18					0	0	0.000274275	0	0
ZNFX1	57169	broad.mit.edu	37	20	47881325	47881325	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:47881325G>A	uc002xui.2	-	5	2326	c.2079C>T	c.(2077-2079)ACC>ACT	p.T693T		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	693							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCTCCCTTAGGGTGAACTGCT	0.542													35	65					0	0	0.00058488	0	0
KCNB1	3745	broad.mit.edu	37	20	47990861	47990861	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:47990861G>A	uc002xur.1	-	2	1400	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I	KCNB1_uc002xus.1_Silent_p.I412I	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	412	Helical; Name=Segment S6; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			AGTTATTGACGATGATGGGGA	0.512													21	59					0	0	0.00188189	0	0
ZFP64	55734	broad.mit.edu	37	20	50769429	50769429	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:50769429G>A	uc002xwl.2	-	6	1651	c.1302C>T	c.(1300-1302)TTC>TTT	p.F434F	ZFP64_uc002xwk.2_Intron|ZFP64_uc002xwm.2_Silent_p.F432F|ZFP64_uc002xwn.2_Silent_p.F380F	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	434	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCTCCCGCATGAAGGAGGCAT	0.572													15	33					0	0	0.00244969	0	0
CDH4	1002	broad.mit.edu	37	20	60498655	60498655	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:60498655C>T	uc002ybn.1	+	10	1535	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	CDH4_uc002ybp.1_Silent_p.F433F	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	507	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CTCCCTACTTCCCCTCAAACC	0.627													6	7					0	0	0.00116845	0	0
DIDO1	11083	broad.mit.edu	37	20	61511288	61511288	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:61511288G>A	uc002ydr.1	-	16	6284	c.6020C>T	c.(6019-6021)TCG>TTG	p.S2007L	DIDO1_uc002yds.1_Missense_Mutation_p.S2007L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2007	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTGAAATCGCGAAGGGGTCTG	0.632													36	67					0	0	0.000953801	0	0
TNFRSF6B	8771	broad.mit.edu	37	20	62328225	62328225	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr20:62328225C>T	uc002yfy.2	+	5	539	c.105C>T	c.(103-105)ACC>ACT	p.T35T	RTEL1_uc011abd.1_3'UTR|RTEL1_uc011abe.1_3'UTR|RTEL1_uc002yfw.2_RNA|RTEL1_uc002yfx.1_3'UTR|TNFRSF6B_uc002yfz.2_Silent_p.T35T	NM_032945	NP_116563	O95407	TNF6B_HUMAN	tumor necrosis factor receptor superfamily,	35	TNFR-Cys 1.				anti-apoptosis|apoptosis	extracellular region|soluble fraction	protein binding|receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.66e-12)|all_epithelial(29;2.56e-13)|Lung NSC(23;1.06e-08)|all_lung(23;3.34e-08)		Epithelial(9;1.78e-08)|all cancers(9;7.89e-08)|OV - Ovarian serous cystadenocarcinoma(5;0.00504)			AAACACCCACCTACCCCTGGC	0.726													6	5					0	0	0.00198382	0	0
USP16	10600	broad.mit.edu	37	21	30409680	30409680	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr21:30409680G>A	uc002ymy.2	+	6	734	c.532G>A	c.(532-534)GAA>AAA	p.E178K	USP16_uc002ymx.2_Missense_Mutation_p.E177K|USP16_uc002ymw.2_Missense_Mutation_p.E178K|USP16_uc011acm.1_Missense_Mutation_p.E163K|USP16_uc011acn.1_Intron|USP16_uc011aco.1_5'Flank	NM_006447	NP_006438	Q9Y5T5	UBP16_HUMAN	ubiquitin specific protease 16 isoform a	178					cell division|histone deubiquitination|mitosis|positive regulation of transcription, DNA-dependent|protein homotetramerization|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|histone binding|transcription coactivator activity|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(2)|breast(1)|pancreas(1)	4						AGAAAAGAAGGAAAACATGGC	0.318													24	27					0	0	0.00047179	0	0
TIAM1	7074	broad.mit.edu	37	21	32493137	32493137	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr21:32493137G>A	uc002yow.1	-	29	4797	c.4325C>T	c.(4324-4326)TCT>TTT	p.S1442F	TIAM1_uc011adk.1_3'UTR|TIAM1_uc011adl.1_Missense_Mutation_p.S1382F	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1442					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CCTCCCAAGAGACTTGCTTGG	0.522													6	14					0	0	0.00116845	0	0
SON	6651	broad.mit.edu	37	21	34927526	34927526	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr21:34927526C>T	uc002yse.1	+	3	6038	c.5989C>T	c.(5989-5991)CGC>TGC	p.R1997C	SON_uc002ysb.1_Missense_Mutation_p.R1997C|SON_uc002ysc.2_Missense_Mutation_p.R1997C|SON_uc002ysd.2_Missense_Mutation_p.R988C|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.R988C	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1997	2 X 19 AA repeats of P-S-R-R-R-R-S-R-S-V- V-R-R-R-S-F-S-I-S.|3-2.				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						caccccaagccgccgGAGAAG	0.209													20	40					0	0	0.00152264	0	0
PCNT	5116	broad.mit.edu	37	21	47831878	47831878	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr21:47831878C>T	uc002zji.3	+	28	5998	c.5891C>T	c.(5890-5892)GCC>GTC	p.A1964V	PCNT_uc002zjj.2_Missense_Mutation_p.A1846V	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1964					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GTGCCCGGGGCCCACCCACAG	0.697													5	11					0	0	0.000602214	0	0
CECR1	51816	broad.mit.edu	37	22	17684584	17684584	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:17684584C>T	uc002zmk.1	-	3	834	c.622G>A	c.(622-624)GAA>AAA	p.E208K	CECR1_uc010gqu.1_Missense_Mutation_p.E208K|CECR1_uc011agi.1_Missense_Mutation_p.E166K|CECR1_uc011agj.1_Missense_Mutation_p.E166K	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	208	Substrate binding.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				AAGATGGTTTCAAATTTCGAC	0.488													6	44					0	0	0.00116845	0	0
P2RX6	9127	broad.mit.edu	37	22	21377663	21377663	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:21377663C>T	uc010gsu.1	+	7	738	c.738C>T	c.(736-738)CTC>CTT	p.L246L	P2RX6_uc002ztz.2_Silent_p.L220L|P2RX6_uc002zua.2_RNA|P2RX6_uc002zuc.1_RNA	NM_005446	NP_005437	O15547	P2RX6_HUMAN	purinergic receptor P2X6 isoform 1	246	Extracellular (Potential).				muscle contraction|protein homooligomerization	cell junction|cytoplasm|integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0						TTGGGGACCTCGTGGCCAAGG	0.627													16	31					0	0	0.000566183	0	0
PRAME	23532	broad.mit.edu	37	22	22890990	22890990	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:22890990G>A	uc002zwf.2	-	5	1185	c.1029C>T	c.(1027-1029)TCC>TCT	p.S343S	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.S327S|PRAME_uc010gtr.2_Silent_p.S343S|PRAME_uc002zwg.2_Silent_p.S343S|PRAME_uc002zwh.2_Silent_p.S343S|PRAME_uc002zwi.2_Silent_p.S343S|PRAME_uc002zwj.2_Silent_p.S343S|PRAME_uc002zwk.2_Silent_p.S343S	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	343	LRR 1.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TGGGACTCTGGGACAGATGCA	0.537													48	82					0	0	0.000781405	0	0
LOC96610	96610	broad.mit.edu	37	22	23011165	23011165	+	RNA	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:23011165C>T	uc011aim.1	+	121		c.7851C>T								Parts of antibodies, mostly variable regions.												0						CCTCAGGGATCCCTGAGCGAT	0.562													8	16					0	0	0.000442599	0	0
MYO18B	84700	broad.mit.edu	37	22	26165122	26165122	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:26165122G>A	uc003abz.1	+	4	1489	c.1239G>A	c.(1237-1239)GAG>GAA	p.E413E	MYO18B_uc003aca.1_Silent_p.E294E|MYO18B_uc010guy.1_Silent_p.E294E|MYO18B_uc010guz.1_Silent_p.E294E|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	413						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GTCAGACAGAGAAGGGCTGTG	0.612													4	13					0	0	0.00024832	0	0
SEZ6L	23544	broad.mit.edu	37	22	26690291	26690291	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:26690291G>A	uc003acb.2	+	3	1025	c.869G>A	c.(868-870)GGG>GAG	p.G290E	SEZ6L_uc003acc.2_Missense_Mutation_p.G290E|SEZ6L_uc011akc.1_Missense_Mutation_p.G290E|SEZ6L_uc003acd.2_Missense_Mutation_p.G290E|SEZ6L_uc011akd.1_Missense_Mutation_p.G290E|SEZ6L_uc003ace.2_Missense_Mutation_p.G290E|SEZ6L_uc003acf.1_Missense_Mutation_p.G63E|SEZ6L_uc010gvc.1_Missense_Mutation_p.G63E	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	290	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AATCCTGAGGGGTACATTGAC	0.517													27	57					0	0	0.00178596	0	0
CSF2RB	1439	broad.mit.edu	37	22	37329990	37329990	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:37329990G>A	uc003aqa.3	+	10	1486	c.1269G>A	c.(1267-1269)GGG>GGA	p.G423G	CSF2RB_uc003aqc.3_Silent_p.G429G	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	423	Extracellular (Potential).|Fibronectin type-III 2.				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity	p.G423E(1)		skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GCTACAACGGGATCTGGAGCG	0.657													18	28					0	0	0.00121646	0	0
SOX10	6663	broad.mit.edu	37	22	38379572	38379572	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:38379572C>T	uc003aun.1	-	2	498	c.220G>A	c.(220-222)GAG>AAG	p.E74K	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Missense_Mutation_p.E74K|SOX10_uc010gxj.2_Missense_Mutation_p.E74K|uc003aup.2_5'Flank	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	74						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CTGACGGCCTCGCGGATGCAC	0.697													4	6					0	0	0.000602214	0	0
CACNA1I	8911	broad.mit.edu	37	22	40078628	40078628	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:40078628A>G	uc003ayc.2	+	35	5792	c.5792A>G	c.(5791-5793)AAC>AGC	p.N1931S	CACNA1I_uc003ayd.2_Missense_Mutation_p.N1896S|CACNA1I_uc003aye.2_Missense_Mutation_p.N1846S|CACNA1I_uc003ayf.2_Missense_Mutation_p.N1811S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1931	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ATCCCATTCAACCCTGTCCGG	0.602													6	16					0	0	0.00116845	0	0
EFCAB6	64800	broad.mit.edu	37	22	44112819	44112819	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:44112819G>A	uc003bdy.1	-	9	1006	c.791C>T	c.(790-792)TCC>TTC	p.S264F	EFCAB6_uc003bdz.1_Missense_Mutation_p.S112F|EFCAB6_uc010gzi.1_Missense_Mutation_p.S112F|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Missense_Mutation_p.S158F|EFCAB6_uc003bea.1_Missense_Mutation_p.S261F|EFCAB6_uc003beb.3_Missense_Mutation_p.S158F	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	264					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTCCTTTTTGGAATTTTTGGC	0.353													18	48					0	0	0.000566183	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45244853	45244853	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:45244853C>T	uc003bfd.2	+	15	1692	c.1420C>T	c.(1420-1422)CCT>TCT	p.P474S	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.P395S|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.P386S|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.P300S|ARHGAP8_uc003bfi.2_Missense_Mutation_p.P264S|ARHGAP8_uc010gzv.2_Missense_Mutation_p.P264S|ARHGAP8_uc003bfj.2_Missense_Mutation_p.P295S|ARHGAP8_uc003bfk.2_Missense_Mutation_p.P264S|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CATTCACATCCCTGCCGTGAT	0.617													40	75					0	0	0.00285205	0	0
BRD1	23774	broad.mit.edu	37	22	50169268	50169268	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:50169268G>A	uc003biv.2	-	11	3451	c.2964C>T	c.(2962-2964)CTC>CTT	p.L988L	BRD1_uc011arf.1_Silent_p.L714L|BRD1_uc011arg.1_Silent_p.L1037L|BRD1_uc011arh.1_Silent_p.L988L|BRD1_uc003biu.3_Silent_p.L1119L	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	988	PWWP.				histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AAAAGAGAACGAGGAACAGCT	0.587													68	97					0	0	0.000781405	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50664720	50664720	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:50664720G>A	uc003bkb.1	-	8	2201	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F	TUBGCP6_uc010har.1_Silent_p.F563F|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_5'Flank	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	563					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		ACCTACCTCGGAAGCTGAGGT	0.612													11	14					0	0	0.000673444	0	0
SBF1	6305	broad.mit.edu	37	22	50894685	50894685	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:50894685G>A	uc003blh.2	-	31	4421	c.4226C>T	c.(4225-4227)TCC>TTC	p.S1409F	SBF1_uc003ble.2_5'Flank|SBF1_uc003blf.2_5'Flank|SBF1_uc011arx.1_Missense_Mutation_p.S1047F	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1383	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCGCAGGAAGGAGGCTGGGCT	0.637													4	15					0	0	0.00024832	0	0
LRRN1	57633	broad.mit.edu	37	3	3886446	3886446	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:3886446C>T	uc003bpt.3	+	2	882	c.121C>T	c.(121-123)CGT>TGT	p.R41C	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	41	LRRNT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		ATGTGAAATTCGTCCCTGGTT	0.458													33	19					0	0	0.00283554	0	0
GRM7	2917	broad.mit.edu	37	3	7620951	7620951	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:7620951A>C	uc003bqm.2	+	8	2632	c.2358A>C	c.(2356-2358)GAA>GAC	p.E786D	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E786D|GRM7_uc003bql.2_Missense_Mutation_p.E786D|GRM7_uc003bqn.1_Missense_Mutation_p.E369D|GRM7_uc010hch.1_Missense_Mutation_p.E297D	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	786	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	ATTTTAACGAAGCCAAGCCCA	0.433													4	24					0	0	0.000602214	0	0
TATDN2	9797	broad.mit.edu	37	3	10312400	10312400	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:10312400C>T	uc003bvg.2	+	4	2115	c.1534C>T	c.(1534-1536)CAA>TAA	p.Q512*	TATDN2_uc003bvf.2_Nonsense_Mutation_p.Q512*|TATDN2_uc011atr.1_Nonsense_Mutation_p.Q512*|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	512						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						GCTATCTTTCCAAGGGACCTT	0.498													32	11					0	0	0.000692331	0	0
FBLN2	2199	broad.mit.edu	37	3	13679197	13679197	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:13679197C>T	uc011avb.1	+	17	3458	c.3333C>T	c.(3331-3333)GCC>GCT	p.A1111A	FBLN2_uc011auz.1_Silent_p.A1137A|FBLN2_uc011ava.1_Silent_p.A1158A|FBLN2_uc011avc.1_Silent_p.A1158A	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	1111	Domain III.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CCGCGCCAGCCTTCACGGGGG	0.622													4	8					0	0	0.000602214	0	0
COLQ	8292	broad.mit.edu	37	3	15498005	15498005	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:15498005G>A	uc003bzx.2	-	14	1162	c.1036C>T	c.(1036-1038)CTG>TTG	p.L346L	COLQ_uc003bzv.2_Silent_p.L336L|COLQ_uc003bzz.2_Silent_p.L337L|COLQ_uc010heo.2_Silent_p.L312L|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Silent_p.L205L|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	346					acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						TTGAAGTACAGAGATCTCTGG	0.537													25	15					0	0	0.001512	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751332	26751332	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:26751332G>A	uc003cdp.2	+	2	758	c.169G>A	c.(169-171)GAA>AAA	p.E57K	LRRC3B_uc003cdq.2_Missense_Mutation_p.E57K	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	57	LRRNT.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						AAATCTCAAGGAAATACCTAG	0.413													27	16					0	0	0.0024448	0	0
SCN11A	11280	broad.mit.edu	37	3	38888196	38888196	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:38888196G>A	uc011ays.1	-	26	5564	c.5365C>T	c.(5365-5367)CAC>TAC	p.H1789Y		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1789					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAGTCACAGTGGACCTTGCCC	0.512													20	19					0	0	0.00278032	0	0
SCN11A	11280	broad.mit.edu	37	3	38950496	38950496	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:38950496C>T	uc011ays.1	-	9	1490	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	431					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACCTCCTTTTCCTCCTTTAAC	0.532													40	23					0	0	0.00195071	0	0
NKTR	4820	broad.mit.edu	37	3	42679340	42679340	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:42679340C>T	uc003clo.2	+	13	2291	c.2144C>T	c.(2143-2145)TCA>TTA	p.S715L	NKTR_uc003clm.1_Missense_Mutation_p.S462L|NKTR_uc003clp.2_Missense_Mutation_p.S462L|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.S605L|NKTR_uc003clr.1_Missense_Mutation_p.S462L|NKTR_uc003cls.2_Missense_Mutation_p.S415L	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	715	Arg/Ser-rich.				protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		CTAGCTAGTTCACATTCAAGG	0.378													40	25					0	0	0.000781405	0	0
BSN	8927	broad.mit.edu	37	3	49689299	49689299	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:49689299C>T	uc003cxe.3	+	5	2424	c.2310C>T	c.(2308-2310)GCC>GCT	p.A770A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	770					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CGCCTGAGGCCTTTGACTCTG	0.632													13	7					0	0	0.00185496	0	0
BSN	8927	broad.mit.edu	37	3	49689342	49689342	+	Missense_Mutation	SNP	G	A	A	rs139369583		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:49689342G>A	uc003cxe.3	+	5	2467	c.2353G>A	c.(2353-2355)GAA>AAA	p.E785K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	785					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGAGGAAGACGAAGACTCTGC	0.597													12	12					0	0	0.00136819	0	0
BSN	8927	broad.mit.edu	37	3	49692341	49692341	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:49692341C>T	uc003cxe.3	+	5	5466	c.5352C>T	c.(5350-5352)GCC>GCT	p.A1784A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1784					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCCAGACAGCCCCATACCGAA	0.592													22	10					0	0	0.00278032	0	0
APEH	327	broad.mit.edu	37	3	49713332	49713332	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:49713332G>A	uc003cxf.2	+	5	775	c.375G>A	c.(373-375)GAG>GAA	p.E125E	APEH_uc010hkw.1_Silent_p.E125E	NM_001640	NP_001631	P13798	ACPH_HUMAN	N-acylaminoacyl-peptide hydrolase	125					proteolysis	cytoplasm|nuclear membrane	serine-type endopeptidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		AGGTCTGGGAGAAGAACCGGA	0.567													10	15					0	0	0.000442599	0	0
HYAL1	3373	broad.mit.edu	37	3	50339712	50339712	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:50339712G>A	uc003czp.2	-	2	808	c.676C>T	c.(676-678)CGT>TGT	p.R226C	HYAL3_uc003czd.1_5'Flank|HYAL3_uc003cze.1_5'Flank|HYAL3_uc003czf.1_5'Flank|HYAL3_uc003czg.1_5'Flank|NAT6_uc003czj.2_5'Flank|NAT6_uc003czk.3_5'Flank|NAT6_uc003czl.1_5'Flank|HYAL1_uc003czm.2_Missense_Mutation_p.R44C|HYAL1_uc003czo.2_Intron|HYAL1_uc003czq.2_Missense_Mutation_p.R226C|HYAL1_uc003czr.2_Missense_Mutation_p.R226C|HYAL1_uc003czn.2_Intron|HYAL1_uc003czs.2_Missense_Mutation_p.R226C|HYAL1_uc003czt.2_Missense_Mutation_p.R226C	NM_033159	NP_149349	Q12794	HYAL1_HUMAN	hyaluronoglucosaminidase 1 isoform 1	226						extracellular space|lysosome	hyalurononglucosaminidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)	Hyaluronidase(DB00070)	TTTTGGGCACGGATGCCTGAT	0.602													10	6					0	0	0.00136819	0	0
LRTM1	57408	broad.mit.edu	37	3	54952869	54952869	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:54952869T>A	uc003dhl.2	-	3	789	c.655A>T	c.(655-657)AAG>TAG	p.K219*	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	219	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AGGAGGTCCTTTCCCTTCCAG	0.527													12	6					0	0	0.000978159	0	0
ERC2	26059	broad.mit.edu	37	3	56468884	56468884	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:56468884G>A	uc003dhr.1	-	2	408	c.152C>T	c.(151-153)TCC>TTC	p.S51F		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	51						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TGCATTGAGGGACTGGATATT	0.532													26	36					0	0	0.000878237	0	0
OR5K4	403278	broad.mit.edu	37	3	98072707	98072707	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:98072707G>A	uc011bgv.1	+	1	10	c.10G>A	c.(10-12)GAA>AAA	p.E4K		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AATGGCTAGGGAAAATCACTC	0.393													18	34					0	0	0.000958276	0	0
COL8A1	1295	broad.mit.edu	37	3	99513711	99513711	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:99513711G>A	uc003dtg.1	+	5	1211	c.966G>A	c.(964-966)GGG>GGA	p.G322G	COL8A1_uc003dth.1_Silent_p.G322G|COL8A1_uc003dti.1_Silent_p.G323G	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	322	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GCCAGGATGGGATCCCAGGCC	0.632													9	23					0	0	0.000274275	0	0
KTELC1	56983	broad.mit.edu	37	3	119190197	119190197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:119190197C>T	uc003ecm.2	+	3	302	c.218C>T	c.(217-219)TCC>TTC	p.S73F	KTELC1_uc011biz.1_RNA|KTELC1_uc011bja.1_5'UTR	NM_152305	NP_689518	Q8NBL1	PGLT1_HUMAN	KTEL (Lys-Tyr-Glu-Leu) containing 1 precursor	73						endoplasmic reticulum lumen	UDP-glucosyltransferase activity				0				GBM - Glioblastoma multiforme(114;0.233)		GGAGGCATCTCCAGGAAGATG	0.502													47	75					0	0	0.000781405	0	0
MGLL	11343	broad.mit.edu	37	3	127411046	127411046	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:127411046G>A	uc003ejx.2	-	8	1052	c.907C>T	c.(907-909)CCC>TCC	p.P303S	MGLL_uc003ejw.2_Missense_Mutation_p.P313S|MGLL_uc011bko.1_Missense_Mutation_p.P283S|MGLL_uc003ejv.2_Missense_Mutation_p.P277S	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	303					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						TGCATTCAGGGTGGGGACGCA	0.532													17	35					0	0	0.00074312	0	0
KIAA1257	57501	broad.mit.edu	37	3	128695841	128695841	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:128695841C>T	uc003elj.3	-	6	1073	c.877G>A	c.(877-879)GAC>AAC	p.D293N	KIAA1257_uc003elg.1_Missense_Mutation_p.D293N|KIAA1257_uc003eli.3_Missense_Mutation_p.D181N	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	293											0						GAAGAATCGTCCATTTTGAGG	0.438													13	26					0	0	0.00244969	0	0
PLXND1	23129	broad.mit.edu	37	3	129276010	129276010	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:129276010G>A	uc003emx.2	-	34	5602	c.5502C>T	c.(5500-5502)ATC>ATT	p.I1834I	PLXND1_uc003emw.2_5'UTR|PLXND1_uc011blb.1_Silent_p.I503I	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1834	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						AGCGCTGCACGATCTTCCGGT	0.587													13	38					0	0	0.00244969	0	0
CPA3	1359	broad.mit.edu	37	3	148599379	148599379	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:148599379C>T	uc003ewm.2	+	7	699	c.647C>T	c.(646-648)CCT>CTT	p.P216L		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	216					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TACATTCTTCCTGTGTTCAAT	0.343													10	38					0	0	0.00136819	0	0
HPS3	84343	broad.mit.edu	37	3	148857936	148857936	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:148857936C>T	uc003ewu.1	+	2	503	c.363C>T	c.(361-363)TTC>TTT	p.F121F	HPS3_uc003ewt.1_Silent_p.F121F|HPS3_uc011bnq.1_Intron	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	121						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			GCAAAGCCTTCAGAGACCAGA	0.463									Hermansky-Pudlak_syndrome				65	91					0	0	0.000781405	0	0
MED12L	116931	broad.mit.edu	37	3	150877779	150877779	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:150877779G>A	uc003eyp.2	+	7	1036	c.998G>A	c.(997-999)AGC>AAC	p.S333N	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Missense_Mutation_p.S333N|MED12L_uc003eyo.2_Missense_Mutation_p.S333N	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	333					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGGGCCCCCAGCCCTGGCCCC	0.597													22	68					0	0	0.00229938	0	0
RSRC1	51319	broad.mit.edu	37	3	158261266	158261266	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:158261266C>T	uc003fbt.2	+	9	1013	c.902C>T	c.(901-903)GCC>GTC	p.A301V	RSRC1_uc003fbv.2_Missense_Mutation_p.A243V	NM_016625	NP_057709	Q96IZ7	RSRC1_HUMAN	arginine/serine-rich coiled-coil 1	301					nucleocytoplasmic transport	cytoplasm|nuclear speck	protein binding				0			Lung(72;0.00416)|LUSC - Lung squamous cell carcinoma(72;0.00575)			AATTCCCTGGCCCATCCAAAT	0.398													19	68					0	0	0.000720815	0	0
SCHIP1	29970	broad.mit.edu	37	3	159606659	159606659	+	Silent	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:159606659A>G	uc003fcs.1	+	6	1311	c.1245A>G	c.(1243-1245)AAA>AAG	p.K415K	SCHIP1_uc003fcq.1_Silent_p.K491K|SCHIP1_uc003fcr.1_Silent_p.K404K|SCHIP1_uc003fct.1_Silent_p.K402K|SCHIP1_uc010hvz.1_Silent_p.K375K|SCHIP1_uc003fcu.1_Silent_p.K172K|SCHIP1_uc003fcv.1_Silent_p.K188K	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	415						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			GAAGTTTAAAACCCACCGACC	0.408													28	48					0	0	0.001512	0	0
PPM1L	151742	broad.mit.edu	37	3	160474204	160474204	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:160474204G>A	uc003fdr.2	+	1	209	c.108G>A	c.(106-108)TGG>TGA	p.W36*		NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	36	Helical; (Potential).				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			TGGCTCTATGGAGTTACTTCT	0.542													10	51					0	0	0.000442599	0	0
OTOL1	131149	broad.mit.edu	37	3	161221535	161221535	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:161221535C>G	uc011bpb.1	+	4	1239	c.1239C>G	c.(1237-1239)TTC>TTG	p.F413L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	413	C1q.					collagen					0						AGAAGCAGTTCAAGTCCAGAG	0.473													5	14					0	0	0.000157383	0	0
MYNN	55892	broad.mit.edu	37	3	169496853	169496853	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:169496853C>T	uc003fft.2	+	3	993	c.564C>T	c.(562-564)TCC>TCT	p.S188S	MYNN_uc011bpm.1_Silent_p.S74S|MYNN_uc003ffu.2_Silent_p.S188S|MYNN_uc003ffv.2_5'UTR|MYNN_uc010hwo.2_Silent_p.S188S|MYNN_uc003ffw.1_RNA	NM_018657	NP_061127	Q9NPC7	MYNN_HUMAN	myoneurin	188	Nuclear localization signal (Potential).					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;2.19e-58)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			CTTTCAACTCCCCGAAAACAG	0.398													14	39					0	0	0.00244969	0	0
ECT2	1894	broad.mit.edu	37	3	172473144	172473144	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:172473144G>A	uc003fii.2	+	3	328	c.190G>A	c.(190-192)GAA>AAA	p.E64K	ECT2_uc010hwv.1_Missense_Mutation_p.E64K|ECT2_uc003fih.2_Missense_Mutation_p.E63K|ECT2_uc003fij.1_Missense_Mutation_p.E64K|ECT2_uc003fik.1_Missense_Mutation_p.E64K|ECT2_uc003fil.1_Missense_Mutation_p.E64K	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	64					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			AAAACAAGAAGAACTTATAAA	0.294													21	32					0	0	0.00229938	0	0
MCF2L2	23101	broad.mit.edu	37	3	183017899	183017899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:183017899G>A	uc003fli.1	-	11	1289	c.1199C>T	c.(1198-1200)CCC>CTC	p.P400L	MCF2L2_uc003flj.1_Missense_Mutation_p.P400L|MCF2L2_uc011bqr.1_RNA|MCF2L2_uc003flp.1_3'UTR	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	400	Spectrin.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			CACACACCGGGGCCTGATGGC	0.512													12	38					0	0	0.00136819	0	0
THPO	7066	broad.mit.edu	37	3	184091239	184091239	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:184091239G>A	uc003fol.1	-	5	575	c.360C>T	c.(358-360)CTC>CTT	p.L120L	THPO_uc003fom.1_Silent_p.L120L|THPO_uc003fon.2_Silent_p.L120L|THPO_uc011bro.1_Silent_p.L120L|THPO_uc003fop.2_Silent_p.L120L|THPO_uc011brp.1_Silent_p.L120L|THPO_uc011brq.1_Silent_p.L120L|THPO_uc003for.1_RNA|THPO_uc003fos.1_RNA|THPO_uc003fot.1_Silent_p.L120L|THPO_uc003fou.1_Silent_p.L120L	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	120					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCCCAAGGAGGAGACGGACCT	0.587													7	32					0	0	0.000274275	0	0
DGKG	1608	broad.mit.edu	37	3	185997672	185997672	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:185997672G>A	uc003fqa.2	-	9	1297	c.760C>T	c.(760-762)CCA>TCA	p.P254S	DGKG_uc003fqb.2_Missense_Mutation_p.P254S|DGKG_uc003fqc.2_Missense_Mutation_p.P254S|DGKG_uc011brx.1_Missense_Mutation_p.P254S	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	254	EF-hand 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	ACCAGCAATGGGATGGTGGTC	0.498													32	40					0	0	0.001512	0	0
IL1RAP	3556	broad.mit.edu	37	3	190322008	190322008	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:190322008C>T	uc003fsm.1	+	4	362	c.156C>T	c.(154-156)CAC>CAT	p.H52H	IL1RAP_uc003fsk.2_Silent_p.H52H|IL1RAP_uc003fsl.2_Silent_p.H52H|IL1RAP_uc010hzf.2_Intron|IL1RAP_uc010hzg.1_Silent_p.H52H|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Silent_p.H52H|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Silent_p.H52H	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	52	Ig-like C2-type 1.|Extracellular (Potential).				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		TCTTTGAACACTTCTTGAAAT	0.493													11	41					0	0	0.00136819	0	0
ATP13A4	84239	broad.mit.edu	37	3	193207525	193207525	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr3:193207525G>A	uc003ftd.2	-	7	840	c.732C>T	c.(730-732)CTC>CTT	p.L244L	ATP13A4_uc003fte.1_Silent_p.L244L|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	244	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TCACCTCTCTGAGATCATATA	0.313													66	117					0	0	0.000781405	0	0
DRD5	1816	broad.mit.edu	37	4	9784439	9784440	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:9784439_9784440GG>AA	uc003gmb.3	+	1	1182_1183	c.786_787GG>AA	c.(784-789)CTGGAG>CTAAAG	p.E263K		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	263	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TTTCCTCCCTGGAGAGGGCCGC	0.629													8	16					0	0	6.4e-05	0	0
DRD5	1816	broad.mit.edu	37	4	9784667	9784667	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:9784667G>A	uc003gmb.3	+	1	1410	c.1014G>A	c.(1012-1014)GAG>GAA	p.E338E		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	338	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GCGTCAGTGAGACCACCTTCG	0.587													33	42					0	0	0.00111076	0	0
SLIT2	9353	broad.mit.edu	37	4	20598263	20598263	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:20598263G>A	uc003gpr.1	+	32	3750	c.3546G>A	c.(3544-3546)ACG>ACA	p.T1182T	SLIT2_uc003gps.1_Silent_p.T1174T	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1182	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGCCTCAGACGAACATAACAC	0.383													19	25					0	0	0.00152264	0	0
PACRGL	133015	broad.mit.edu	37	4	20728951	20728951	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:20728951C>T	uc010iek.2	+	9	1125	c.734C>T	c.(733-735)TCC>TTC	p.S245F	PACRGL_uc003gpu.2_RNA|PACRGL_uc003gpz.2_Missense_Mutation_p.S218F|PACRGL_uc011bxm.1_3'UTR|PACRGL_uc003gqa.2_Missense_Mutation_p.S120F|PACRGL_uc003gpx.3_RNA|PACRGL_uc003gpv.2_Missense_Mutation_p.S218F|PACRGL_uc003gpw.2_RNA|PACRGL_uc011bxn.1_Missense_Mutation_p.S120F|PACRGL_uc003gpy.2_Missense_Mutation_p.S165F	NM_145048	NP_659485	Q8N7B6	PACRL_HUMAN	PARK2 co-regulated-like isoform 1	245							binding				0						ACATACTGCTCCATATGCTGT	0.368													30	62					0	0	0.00127121	0	0
ARAP2	116984	broad.mit.edu	37	4	36230649	36230649	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:36230649G>A	uc003gsq.1	-	2	798	c.460C>T	c.(460-462)CCC>TCC	p.P154S	ARAP2_uc003gsr.1_Missense_Mutation_p.P154S	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	154					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCTGCAGTGGGGAAGTCGCGT	0.388													23	38					0	0	0.00278032	0	0
ATP8A1	10396	broad.mit.edu	37	4	42545962	42545962	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:42545962C>T	uc003gwr.2	-	20	1926	c.1694G>A	c.(1693-1695)GGA>GAA	p.G565E	ATP8A1_uc003gws.2_Missense_Mutation_p.G550E|ATP8A1_uc011byz.1_Missense_Mutation_p.G550E	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	565	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TCGTAACTTTCCAGATGGAGT	0.328													18	28					0	0	0.000958276	0	0
ATP8A1	10396	broad.mit.edu	37	4	42554606	42554606	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:42554606C>T	uc003gwr.2	-	17	1667	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	ATP8A1_uc003gws.2_Missense_Mutation_p.E464K|ATP8A1_uc011byz.1_Missense_Mutation_p.E464K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	479	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GTAAGAAATTCACATATTATA	0.373													34	41					0	0	0.00128727	0	0
AFP	174	broad.mit.edu	37	4	74302028	74302028	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:74302028G>A	uc003hgz.1	+	1	96	c.49G>A	c.(49-51)GAA>AAA	p.E17K	AFP_uc003hha.1_Missense_Mutation_p.E17K|AFP_uc003hgy.1_Intron	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	17					transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AAATTTTACTGAATCCAGAAC	0.284									Alpha-Fetoprotein_Hereditary_Persistence_of				21	30					0	0	0.000878237	0	0
WDFY3	23001	broad.mit.edu	37	4	85676491	85676491	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:85676491G>A	uc003hpd.2	-	34	5895	c.5487C>T	c.(5485-5487)GTC>GTT	p.V1829V		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1829						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GGATAGAAGAGACCACAGTTC	0.443													29	30					0	0	0.00209593	0	0
PKD2	5311	broad.mit.edu	37	4	88996693	88996693	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:88996693C>T	uc003hre.2	+	15	2820	c.2754C>T	c.(2752-2754)TCC>TCT	p.S918S	PKD2_uc011cdf.1_Silent_p.S336S|PKD2_uc011cdg.1_Silent_p.S244S|PKD2_uc011cdh.1_Silent_p.S141S	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	918	Potential.|C-terminal coiled coil domain.|Cytoplasmic (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		GCTGGGAATCCGATGATGCAG	0.512													37	62					0	0	0.000814825	0	0
EIF4E	1977	broad.mit.edu	37	4	99806186	99806186	+	Silent	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:99806186A>G	uc003hue.2	-	6	1949	c.426T>C	c.(424-426)TTT>TTC	p.F142F	EIF4E_uc011cea.1_Silent_p.F162F|EIF4E_uc011ceb.1_Silent_p.F173F	NM_001968	NP_001959	P06730	IF4E_HUMAN	eukaryotic translation initiation factor 4E	142					G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|interspecies interaction between organisms|mRNA export from nucleus|nuclear-transcribed mRNA poly(A) tail shortening|positive regulation of mitotic cell cycle|regulation of translation	cytoplasmic mRNA processing body|cytosol|eukaryotic translation initiation factor 4F complex|mRNA cap binding complex|RNA-induced silencing complex	protein binding|RNA cap binding|translation initiation factor activity			lung(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)|LUSC - Lung squamous cell carcinoma(721;0.00227)		TGTAGTCATCAAAAGATTCTC	0.338													12	14					0	0	0.00136819	0	0
EGF	1950	broad.mit.edu	37	4	110925678	110925678	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:110925678C>T	uc003hzy.3	+	22	3643	c.3191C>T	c.(3190-3192)TCG>TTG	p.S1064L	EGF_uc011cfu.1_Missense_Mutation_p.S1022L|EGF_uc011cfv.1_Missense_Mutation_p.S1023L|EGF_uc010imk.2_Missense_Mutation_p.S212L	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	1064	Cytoplasmic (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	AAGCTGCTATCGAAAAACCCA	0.468													50	81					0	0	0.000781405	0	0
ENPEP	2028	broad.mit.edu	37	4	111397573	111397573	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:111397573G>A	uc003iab.3	+	1	345	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	1	Cytoplasmic (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AAGCAAAAATGAACTTTGCGG	0.408													39	71					0	0	0.00222228	0	0
KIAA1109	84162	broad.mit.edu	37	4	123113461	123113461	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:123113461C>T	uc003ieh.2	+	9	1024	c.979C>T	c.(979-981)CCA>TCA	p.P327S	KIAA1109_uc003iei.1_Missense_Mutation_p.P81S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	327					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGACTTGCCTCCATGTTGGGG	0.373													25	39					0	0	0.00047179	0	0
IL21	59067	broad.mit.edu	37	4	123533869	123533869	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:123533869G>A	uc003ies.2	-	5	530	c.485C>T	c.(484-486)TCC>TTC	p.S162F	IL21_uc010int.2_3'UTR	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	155					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						AGATCCTCAGGAATCTTCACT	0.373													10	26					0	0	0.000673444	0	0
POU4F2	5458	broad.mit.edu	37	4	147561591	147561591	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:147561591G>A	uc003ikv.2	+	2	1109	c.861G>A	c.(859-861)AAG>AAA	p.K287K		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	287	POU-specific.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CCAACCTCAAGATCCCCGGCG	0.627													8	23					0	0	0.000442599	0	0
LRBA	987	broad.mit.edu	37	4	151203748	151203748	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:151203748C>T	uc010ipj.2	-	56	8677	c.8203G>A	c.(8203-8205)GAG>AAG	p.E2735K	LRBA_uc010ipi.2_Missense_Mutation_p.E257K|LRBA_uc003ils.3_Missense_Mutation_p.E630K|LRBA_uc003ilt.3_Missense_Mutation_p.E1383K|LRBA_uc003ilu.3_Missense_Mutation_p.E2723K|LRBA_uc003ilr.3_Missense_Mutation_p.E155K	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2735	WD 4.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCAGGACCCTCCAAGGTCCTC	0.408													41	72					0	0	0.00285205	0	0
DCHS2	54798	broad.mit.edu	37	4	155278420	155278420	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:155278420C>T	uc003inw.2	-	6	751	c.751G>A	c.(751-753)GAA>AAA	p.E251K	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	251	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ttcattacttccttgtctgct	0													45	73					0	0	0.000680045	0	0
PLRG1	5356	broad.mit.edu	37	4	155461993	155461993	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:155461993G>A	uc003iny.2	-	9	844	c.781C>T	c.(781-783)CTG>TTG	p.L261L	PLRG1_uc003inz.2_Silent_p.L252L|PLRG1_uc011cil.1_Silent_p.L100L	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	261	WD 2.					catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				CAAGAGAACAGATATGGGCTC	0.403													30	59					0	0	0.00209593	0	0
GLRB	2743	broad.mit.edu	37	4	158073936	158073936	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:158073936C>T	uc003ipj.2	+	9	1173	c.971C>T	c.(970-972)TCC>TTC	p.S324F		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	324					nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	CCCAAAGTTTCCTATGTGAAG	0.483													39	62					0	0	0.00128727	0	0
TRIM61	391712	broad.mit.edu	37	4	165891010	165891010	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:165891010C>T	uc003iqw.2	-	3	756	c.145G>A	c.(145-147)GAT>AAT	p.D49N		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	49	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		GGGAAACTATCATGTAGATCC	0.463													15	71					0	0	0.000422831	0	0
ADAM29	11086	broad.mit.edu	37	4	175897197	175897197	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:175897197G>A	uc003iuc.2	+	5	1191	c.521G>A	c.(520-522)CGA>CAA	p.R174Q	ADAM29_uc003iud.2_Missense_Mutation_p.R174Q|ADAM29_uc010irr.2_Missense_Mutation_p.R174Q|ADAM29_uc011cki.1_Missense_Mutation_p.R174Q	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	174					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ATAACATGCCGAATGGAATTT	0.363													25	55					0	0	0.000720815	0	0
TRIML1	339976	broad.mit.edu	37	4	189068190	189068190	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr4:189068190C>T	uc003izm.1	+	6	1186	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	TRIML1_uc003izn.1_Silent_p.I81I	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	357	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AAGTGGGCATCTGCAAGGACT	0.532													17	31					0	0	0.00074312	0	0
IRX2	153572	broad.mit.edu	37	5	2749606	2749606	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:2749606G>T	uc003jda.2	-	2	787	c.545C>A	c.(544-546)CCG>CAG	p.P182Q	C5orf38_uc003jdc.2_5'Flank|C5orf38_uc011cmg.1_5'Flank|C5orf38_uc011cmh.1_5'Flank|C5orf38_uc011cmi.1_5'Flank|C5orf38_uc011cmj.1_5'Flank|IRX2_uc003jdb.2_Missense_Mutation_p.P182Q	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	182						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		TTTGTTTCTCGGGGCCCAGGT	0.612													5	67					0.00198382	0.00863125	0.00198382	1	0
FAM173B	134145	broad.mit.edu	37	5	10239213	10239213	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:10239213G>A	uc003jeo.2	-	2	301	c.272C>T	c.(271-273)TCC>TTC	p.S91F	FAM173B_uc003jep.2_RNA|FAM173B_uc010itr.2_Missense_Mutation_p.S91F	NM_199133	NP_954584	Q6P4H8	F173B_HUMAN	hypothetical protein LOC134145	91						integral to membrane				kidney(1)|central_nervous_system(1)	2						GTCCACAAGGGATCCTCTTCG	0.418													55	89					0	0	0.000781405	0	0
DNAH5	1767	broad.mit.edu	37	5	13717504	13717504	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:13717504G>A	uc003jfd.2	-	73	12667	c.12625C>T	c.(12625-12627)CCC>TCC	p.P4209S	DNAH5_uc003jfc.2_Missense_Mutation_p.P377S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4209	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AATTCGTAGGGGATATTCCAC	0.547									Kartagener_syndrome				18	18					0	0	0.00074312	0	0
DNAH5	1767	broad.mit.edu	37	5	13737541	13737541	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:13737541C>T	uc003jfd.2	-	66	11317	c.11275G>A	c.(11275-11277)GAA>AAA	p.E3759K	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3759	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTTCTAGTTCCTTCATCCTT	0.383									Kartagener_syndrome				44	54					0	0	0.00222228	0	0
DNAH5	1767	broad.mit.edu	37	5	13753569	13753569	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:13753569C>T	uc003jfd.2	-	63	10687	c.10645G>A	c.(10645-10647)GAA>AAA	p.E3549K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3549					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTTTCATTTCCTTCCGCCAG	0.403									Kartagener_syndrome				57	102					0	0	0.000781405	0	0
CDH18	1016	broad.mit.edu	37	5	19591191	19591191	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:19591191C>T	uc003jgc.2	-	6	1351	c.974G>A	c.(973-975)AGA>AAA	p.R325K	CDH18_uc003jgd.2_Missense_Mutation_p.R325K|CDH18_uc011cnm.1_Missense_Mutation_p.R325K	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	325	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GATTCCTTCTCTGGTCTCTTT	0.403													29	43					0	0	0.00178596	0	0
CDH10	1008	broad.mit.edu	37	5	24505343	24505343	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:24505343C>T	uc003jgr.1	-	8	1603	c.1271G>A	c.(1270-1272)CGC>CAC	p.R424H	CDH10_uc011cnu.1_Intron	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	424	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GTCAGTATGGCGATCCAAGGA	0.368										HNSCC(23;0.051)			25	35					0	0	0.000720815	0	0
AGXT2	64902	broad.mit.edu	37	5	35010173	35010173	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:35010173C>T	uc003jjf.2	-	12	1349	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	AGXT2_uc003jje.1_Missense_Mutation_p.E77K|AGXT2_uc011com.1_Missense_Mutation_p.E349K	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	424					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	ATTTCAAATTCATCCCGCAGC	0.438													34	68					0	0	0.000814825	0	0
C5orf42	65250	broad.mit.edu	37	5	37157847	37157847	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:37157847G>A	uc011cpa.1	-	40	8113	c.7882C>T	c.(7882-7884)CCA>TCA	p.P2628S	C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1146S|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P1721S	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2628										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			GCAGACGATGGAACTGCTAGA	0.363													25	58					0	0	0.00127121	0	0
C7	730	broad.mit.edu	37	5	40981538	40981538	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:40981538G>A	uc003jmh.2	+	18	2509	c.2395G>A	c.(2395-2397)GAA>AAA	p.E799K		NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	799	Complement control factor I module 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GGAGTGCGAGGAAGAAGGGTT	0.522													19	9					0	0	0.00188189	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41049436	41049436	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:41049436T>A	uc003jmj.3	-	14	1937	c.1447A>T	c.(1447-1449)AAG>TAG	p.K483*	HEATR7B2_uc003jmi.3_Nonsense_Mutation_p.K38*	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	483							binding			ovary(6)|central_nervous_system(2)	8						TGCTGCTTCTTCTCCTCTGCC	0.458													10	42					0	0	0.000673444	0	0
C6	729	broad.mit.edu	37	5	41149356	41149356	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:41149356C>T	uc003jmk.2	-	17	2820	c.2610G>A	c.(2608-2610)TGG>TGA	p.W870*	C6_uc003jml.1_Nonsense_Mutation_p.W870*	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	870	Complement control factor I module 2.|C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AACATTTTTCCCAGTCATAGC	0.423													95	152					0	0	0.000781405	0	0
HCN1	348980	broad.mit.edu	37	5	45462025	45462025	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:45462025C>T	uc003jok.2	-	3	959	c.934G>A	c.(934-936)GAT>AAT	p.D312N		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	312	Helical; Name=Segment S5; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						AGACAACCATCCCAGTGGCAC	0.413													19	18					0	0	0.00121646	0	0
VCAN	1462	broad.mit.edu	37	5	82833328	82833328	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:82833328C>T	uc003kii.3	+	8	4862	c.4506C>T	c.(4504-4506)CCC>CCT	p.P1502P	VCAN_uc003kij.3_Silent_p.P515P|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.P166P	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1502	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ATGTTTTCCCCACAGTCCCAT	0.438													18	14					0	0	0.000958276	0	0
YTHDC2	64848	broad.mit.edu	37	5	112868587	112868587	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:112868587C>T	uc003kqn.2	+	5	870	c.687C>T	c.(685-687)TTC>TTT	p.F229F	YTHDC2_uc010jce.1_Silent_p.F229F|YTHDC2_uc010jcf.1_5'UTR	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	229	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		TTCCTCAGTTCCTTTTAGATG	0.274													45	15					0	0	0.000781405	0	0
FNIP1	96459	broad.mit.edu	37	5	131066709	131066709	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:131066709A>C	uc003kvs.1	-	3	384	c.242T>G	c.(241-243)GTT>GGT	p.V81G	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Missense_Mutation_p.V81G|FNIP1_uc010jdm.1_Intron|FNIP1_uc003kvu.2_Missense_Mutation_p.V81G	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	81					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		AAAGACTTTAACTTGAGCATC	0.348													38	13					0	0	0.0025221	0	0
BRD8	10902	broad.mit.edu	37	5	137486557	137486557	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:137486557C>T	uc003lcf.1	-	22	3052	c.2997G>A	c.(2995-2997)GAG>GAA	p.E999E	BRD8_uc003lcc.1_Intron	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	999					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TAGCTGAAAGCTCTTCAGTCT	0.488													40	21					0	0	0.00170553	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221258	140221258	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:140221258C>T	uc003lhs.2	+	1	352	c.352C>T	c.(352-354)CAT>TAT	p.H118Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.H118Y	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	118	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGGTTTTCCATGTGGACGT	0.557													61	38					0	0	0.000781405	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579560	140579560	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:140579560G>A	uc003liy.2	+	1	213	c.213G>A	c.(211-213)AAG>AAA	p.K71K	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	71	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTAATGATAAGAAACAGCGTT	0.527													49	18					0	0	0.000781405	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603558	140603558	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:140603558G>A	uc003ljb.2	+	1	481	c.481G>A	c.(481-483)GAT>AAT	p.D161N	PCDHB14_uc011dal.1_Missense_Mutation_p.D8N	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	161	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAAGATTTGGATGTCGGAAG	0.398													31	10					0	0	0.000692331	0	0
PDE6A	5145	broad.mit.edu	37	5	149324129	149324129	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:149324129G>A	uc003lrg.3	-	1	228	c.108C>T	c.(106-108)CTC>CTT	p.L36L		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	36					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGGCCCCAAGGAGGTCGGAGA	0.557													25	9					0	0	0.000586117	0	0
SLC36A1	206358	broad.mit.edu	37	5	150838400	150838400	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:150838400C>T	uc003luc.2	+	2	264	c.47C>T	c.(46-48)TCC>TTC	p.S16F	GM2A_uc011dcs.1_Intron|SLC36A1_uc003lub.1_Missense_Mutation_p.S16F|SLC36A1_uc010jhw.1_Missense_Mutation_p.S16F	NM_078483	NP_510968	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 member 1	16	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			skin(1)	1		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	GACTACAGCTCCACGGACGTG	0.592													27	8					0	0	0.000586117	0	0
ADAM19	8728	broad.mit.edu	37	5	156918648	156918648	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:156918648G>A	uc003lwz.2	-	18	2134	c.2070C>T	c.(2068-2070)ATC>ATT	p.I690I	ADAM19_uc003lww.1_Silent_p.I423I|ADAM19_uc003lwy.2_Silent_p.I289I|ADAM19_uc011ddr.1_Silent_p.I621I	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	690	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCCCACTGTCGATACTGCCCC	0.637													6	4					0	0	0.00198382	0	0
ARL10	285598	broad.mit.edu	37	5	175793397	175793397	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:175793397G>A	uc003mec.1	+	2	263	c.198G>A	c.(196-198)GAG>GAA	p.E66E	ARL10_uc003meb.2_Silent_p.E66E|MIR1271_hsa-mir-1271|MI0003814_5'Flank	NM_173664	NP_775935	Q8N8L6	ARL10_HUMAN	ADP-ribosylation factor-like 10	66							GTP binding			ovary(1)	1	all_cancers(89;0.0064)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.0965)		AGGACGAGGAGGACGAGGAGC	0.692													7	3					0	0	0.000157383	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166281	180166281	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:180166281G>A	uc003mmf.1	-	1	778	c.778C>T	c.(778-780)CAA>TAA	p.Q260*		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGATGGATTGGAGATATGTG	0.423													92	40					0	0	0.000781405	0	0
OR2V2	285659	broad.mit.edu	37	5	180582587	180582587	+	Silent	SNP	C	T	T	rs146384535	byFrequency	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr5:180582587C>T	uc011dhj.1	+	1	645	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCTCCATCATCGTGGCCTCCT	0.522													92	46					0	0	0.000781405	0	0
DSP	1832	broad.mit.edu	37	6	7569418	7569418	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:7569418G>A	uc003mxp.1	+	12	1699	c.1420_splice	c.e12-1	p.K474_splice	DSP_uc003mxq.1_Splice_Site_p.K474_splice	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I						cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TTGCCTTACAGAAAATCGTGC	0.448													38	49					0	0	0.00285205	0	0
KIF13A	63971	broad.mit.edu	37	6	17817358	17817358	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:17817358G>A	uc003ncg.3	-	17	1998	c.1893C>T	c.(1891-1893)CTC>CTT	p.L631L	KIF13A_uc003ncf.2_Silent_p.L631L|KIF13A_uc003nch.3_Silent_p.L631L|KIF13A_uc003nci.3_Silent_p.L631L|KIF13A_uc003ncj.2_Silent_p.L307L	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	631	Potential.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			GCTGCTGGCGGAGTTGCTCCA	0.587													17	26					0	0	0.000566183	0	0
ZNF184	7738	broad.mit.edu	37	6	27424695	27424695	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:27424695G>A	uc003njj.2	-	4	1019	c.208C>T	c.(208-210)CAA>TAA	p.Q70*	ZNF184_uc010jqv.2_Nonsense_Mutation_p.Q70*|ZNF184_uc003nji.2_Nonsense_Mutation_p.Q70*	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	70	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTAGAAACTTGGAGTCCTGTT	0.418													32	41					0	0	0.00283554	0	0
GPX6	257202	broad.mit.edu	37	6	28478531	28478531	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:28478531G>A	uc011dlj.1	-	3	288	c.238C>T	c.(238-240)CCT>TCT	p.P80S	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	80					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TTCTTACCAGGATACTGAGCT	0.473													20	34					0	0	0.000958276	0	0
GPX5	2880	broad.mit.edu	37	6	28500198	28500198	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:28500198G>A	uc003nll.2	+	4	461	c.459_splice	c.e4+1	p.K153_splice	GPX5_uc003nlm.2_Splice_Site|GPX5_uc003nln.2_Splice_Site	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor						lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	TTTCTTGAAGGTGAGTAAATT	0.453													9	23					0	0	0.000442599	0	0
MSH5	4439	broad.mit.edu	37	6	31708975	31708975	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:31708975G>T	uc003nwv.1	+	3	262	c.183G>T	c.(181-183)TTG>TTT	p.L61F	MSH5_uc003nwt.1_Missense_Mutation_p.L61F|MSH5_uc003nwu.1_Missense_Mutation_p.L61F|MSH5_uc003nww.1_Missense_Mutation_p.L61F|MSH5_uc003nwx.1_Missense_Mutation_p.L61F	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	61					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CAGGATACTTGGGCATTGCCT	0.453								Direct_reversal_of_damage|MMR					10	324					0.000442599	0.00193637	0.000442599	1	0
TNXB	7148	broad.mit.edu	37	6	32026065	32026065	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:32026065C>T	uc003nzl.2	-	22	7797	c.7595G>A	c.(7594-7596)GGA>GAA	p.G2532E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2592	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGGGGAGGATCCTGTCACTGT	0.672													89	98					0	0	0.000781405	0	0
COL11A2	1302	broad.mit.edu	37	6	33156784	33156784	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:33156784G>A	uc003ocx.1	-	3	642	c.414C>T	c.(412-414)GTC>GTT	p.V138V	COL11A2_uc003ocy.1_Silent_p.V138V|COL11A2_uc003ocz.1_Silent_p.V138V|COL11A2_uc003oda.2_Silent_p.V138V	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	138	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGCCTCGGAAGACTGGCTGAG	0.612													33	102					0	0	0.00128727	0	0
KIFC1	3833	broad.mit.edu	37	6	33371517	33371517	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:33371517C>T	uc003oef.3	+	6	817	c.367C>T	c.(367-369)CCT>TCT	p.P123S	KIFC1_uc011drf.1_Intron	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	123					blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						ATCAGGTGTTCCTCCCATGGC	0.498													23	17					0	0	0.00047179	0	0
DNAH8	1769	broad.mit.edu	37	6	38854694	38854694	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:38854694G>A	uc003ooe.1	+	55	8336	c.7736G>A	c.(7735-7737)CGA>CAA	p.R2579Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGAGGTGGTCGAAATGATATT	0.373													27	38					0	0	0.000720815	0	0
KCNK5	8645	broad.mit.edu	37	6	39159497	39159497	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:39159497G>A	uc003oon.2	-	5	1033	c.669C>T	c.(667-669)TAC>TAT	p.Y223Y		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	223					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CGAAGTAGCGGTACAGGGCGT	0.562													19	53					0	0	0.00278032	0	0
KIF6	221458	broad.mit.edu	37	6	39563951	39563951	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:39563951C>T	uc003oot.2	-	7	820	c.725G>A	c.(724-726)CGA>CAA	p.R242Q	KIF6_uc010jxa.1_Missense_Mutation_p.R33Q|KIF6_uc011dua.1_Missense_Mutation_p.R242Q|KIF6_uc010jxb.1_Missense_Mutation_p.R242Q	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	242	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TTTGGCATGTCGTACAGTTGC	0.463													16	32					0	0	0.000422831	0	0
LRFN2	57497	broad.mit.edu	37	6	40359697	40359697	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:40359697C>T	uc003oph.1	-	3	2820	c.2355G>A	c.(2353-2355)ATG>ATA	p.M785I		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	785	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCGTGCTCTCCATCACCCATT	0.597													11	26					0	0	0.00136819	0	0
GPR111	222611	broad.mit.edu	37	6	47654739	47654739	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:47654739C>T	uc010jzk.1	+	8	2151	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	GPR111_uc003oyy.2_RNA|GPR115_uc003oyz.1_Intron	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	Error:Variant_position_missing_in_Q8IZF7_after_alignment					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GTTTCTTCATCCTAGTGTTTG	0.358													31	80					0	0	0.00148497	0	0
PGK2	5232	broad.mit.edu	37	6	49754580	49754580	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:49754580G>A	uc003ozu.2	-	1	428	c.321C>T	c.(319-321)GCC>GCT	p.A107A		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	107					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GGTTGGCACAGGCTTTCTCCA	0.507													22	41					0	0	0.00188189	0	0
GFRAL	389400	broad.mit.edu	37	6	55223796	55223796	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:55223796G>A	uc003pcm.1	+	6	898	c.812G>A	c.(811-813)GGA>GAA	p.G271E		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	271	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACTTGTTCAGGAAGTGATGAC	0.433													50	69					0	0	0.000781405	0	0
LGSN	51557	broad.mit.edu	37	6	63991013	63991013	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:63991013A>G	uc003peh.2	-	4	477	c.443T>C	c.(442-444)GTC>GCC	p.V148A	LGSN_uc003pei.2_Missense_Mutation_p.V148A	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	148					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TGGCATTAGGACTATGTCGCT	0.418													7	89					0	0	0.00198382	0	0
ROS1	6098	broad.mit.edu	37	6	117714445	117714445	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:117714445C>T	uc003pxp.1	-	11	1403	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	402	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GGAGTAATTTCCTCGATGTTT	0.363			T	GOPC|ROS1	glioblastoma|NSCLC								155	85					0	0	0.000781405	0	0
C6orf170	221322	broad.mit.edu	37	6	121481218	121481218	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:121481218G>A	uc003pyo.1	-	24	2779	c.2711C>T	c.(2710-2712)TCA>TTA	p.S904L	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_Missense_Mutation_p.S3L|C6orf170_uc003pyp.1_Missense_Mutation_p.S464L	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	904					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		TGGATATGATGAAAACATTGG	0.303													45	44					0	0	0.000781405	0	0
HIVEP2	3097	broad.mit.edu	37	6	143081308	143081308	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:143081308G>A	uc003qjd.2	-	9	6860	c.6117C>T	c.(6115-6117)TTC>TTT	p.F2039F		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2039					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TTGAGGGTGAGAAGTCCCTGG	0.478													34	23					0	0	0.000953801	0	0
FAM120B	84498	broad.mit.edu	37	6	170632278	170632278	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr6:170632278C>T	uc003qxp.2	+	3	1954	c.1846C>T	c.(1846-1848)CCC>TCC	p.P616S	FAM120B_uc003qxo.1_Missense_Mutation_p.P616S|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	616					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		CCAGGCCTTACCCAGCCAGGC	0.502													26	9					0	0	0.000878237	0	0
HEATR2	54919	broad.mit.edu	37	7	796514	796514	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:796514C>T	uc010krz.1	+	6	1373	c.1353C>T	c.(1351-1353)TCC>TCT	p.S451S	HEATR2_uc003siz.2_Silent_p.S319S	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	451							protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		CCTCTGCCTCCGGCCTCCTGG	0.642													32	42					0	0	0.000814825	0	0
SDK1	221935	broad.mit.edu	37	7	4152925	4152925	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:4152925C>T	uc003smx.2	+	24	3578	c.3439C>T	c.(3439-3441)CGA>TGA	p.R1147*	SDK1_uc010kso.2_Nonsense_Mutation_p.R423*	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1147	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTTTAGATTTCGAATGAAGCA	0.537													76	153					0	0	0.000781405	0	0
DNAH11	8701	broad.mit.edu	37	7	21827122	21827122	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:21827122A>T	uc003svc.2	+	61	9897	c.9866A>T	c.(9865-9867)AAT>ATT	p.N3289I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3289	Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CCAGAGTTTAATCCAAACCTG	0.373									Kartagener_syndrome				29	39					0	0	0.000878237	0	0
HOXA1	3198	broad.mit.edu	37	7	27135367	27135367	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:27135367C>T	uc003sye.2	-	1	259	c.165G>A	c.(163-165)GTG>GTA	p.V55V	HOXA1_uc003syd.2_Silent_p.V55V|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	55						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						CCCCCCTGCCCACTAGGAAGC	0.537											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	11	37					0	0	0.000978159	0	0
HOXA5	3202	broad.mit.edu	37	7	27181684	27181684	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:27181684C>T	uc003syn.1	-	2	644	c.583G>A	c.(583-585)GGC>AGC	p.G195S		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	195	Homeobox.				negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCCTTTTGCCTTCCGGGCCG	0.567											OREG0017911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	28					0	0	0.000673444	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27797657	27797657	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:27797657G>T	uc003szl.2	+	3	328	c.170G>T	c.(169-171)TGG>TTG	p.W57L	TAX1BP1_uc011jzo.1_Missense_Mutation_p.W57L|TAX1BP1_uc003szk.2_Missense_Mutation_p.W57L|TAX1BP1_uc011jzp.1_5'UTR	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	57					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			TAGGTTGGATGGAGTACTGCT	0.348													11	470					0.00136819	0.00596101	0.00136819	1	0
ADCYAP1R1	117	broad.mit.edu	37	7	31117614	31117614	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:31117614G>A	uc003tca.1	+	4	389	c.166G>A	c.(166-168)GGG>AGG	p.G56R	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.G56R|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.G56R|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.G56R|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.G56R	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	56	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						AGGCTGTCCTGGGATGTGGGA	0.428													16	25					0	0	0.000422831	0	0
NPSR1	387129	broad.mit.edu	37	7	34851465	34851465	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:34851465C>T	uc003teg.1	+	4	596	c.468C>T	c.(466-468)TTC>TTT	p.F156F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.F156F|NPSR1_uc010kwt.1_Silent_p.F3F|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Silent_p.F156F|NPSR1_uc010kww.1_Silent_p.F145F|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	156	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CCATGAAGTTCCTTCAAGGAG	0.443													45	58					0	0	0.000781405	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44801501	44801501	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:44801501C>T	uc003tlr.2	+	11	1716	c.1593C>T	c.(1591-1593)TGC>TGT	p.C531C	ZMIZ2_uc003tlq.2_Silent_p.C473C|ZMIZ2_uc003tls.2_Silent_p.C505C|ZMIZ2_uc003tlt.2_Silent_p.C154C|ZMIZ2_uc010kyj.2_Silent_p.C53C	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	531					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CCGCCTGCTGCTGCGTGCGTG	0.388													8	23					0	0	0.000274275	0	0
ADCY1	107	broad.mit.edu	37	7	45717629	45717629	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:45717629C>T	uc003tne.3	+	9	1785	c.1767C>T	c.(1765-1767)ACC>ACT	p.T589T		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	589	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ACTTCTTTACCCTGAAGTACA	0.567													17	39					0	0	0.000566183	0	0
IKZF1	10320	broad.mit.edu	37	7	50459562	50459562	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:50459562G>A	uc003tow.3	+	8	1018	c.850_splice	c.e8+1	p.G284_splice	IKZF1_uc003tox.3_Splice_Site_p.G242_splice|IKZF1_uc003toy.3_Splice_Site_p.G242_splice|IKZF1_uc011kck.1_Splice_Site_p.G197_splice|IKZF1_uc003toz.3_Splice_Site_p.G254_splice|IKZF1_uc010kyx.2_Intron|IKZF1_uc003tpa.3_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)						cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(25)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				AAATTTCTTGGTAAGAGTTAA	0.398			D		ALL								8	7					0	0	0.000157383	0	0
POM121L12	285877	broad.mit.edu	37	7	53104225	53104225	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:53104225C>T	uc003tpz.2	+	1	877	c.861C>T	c.(859-861)GTC>GTT	p.V287V		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	287											0						CCCTCGAGGTCACCCAGTCTG	0.622													15	30					0	0	0.00074312	0	0
ZNF735	730291	broad.mit.edu	37	7	63680401	63680402	+	Missense_Mutation	DNP	CT	TC	TC	rs10258764	by1000genomes	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:63680401_63680402CT>TC	uc011kdn.1	+	4	972_973	c.972_973CT>TC	c.(970-975)CCCTAC>CCTCAC	p.Y325H		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	325	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGAGAAACCCTACACATGTGA	0.421													9	13					0	0	6.4e-05	0	0
WBSCR17	64409	broad.mit.edu	37	7	70597977	70597977	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:70597977C>T	uc003tvy.2	+	1	189	c.189C>T	c.(187-189)GTC>GTT	p.V63V		NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	63	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AGGATGCGGTCCTGAAGCGCC	0.726													6	10					0	0	0.00116845	0	0
HGF	3082	broad.mit.edu	37	7	81381514	81381514	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:81381514C>T	uc003uhl.2	-	5	712	c.547G>A	c.(547-549)GAA>AAA	p.E183K	HGF_uc003uhm.2_Missense_Mutation_p.E178K|HGF_uc003uhn.1_Missense_Mutation_p.E183K|HGF_uc003uho.1_Missense_Mutation_p.E178K|HGF_uc003uhp.2_Missense_Mutation_p.E183K	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	183	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CCCCCTTCTTCCCCTCGAGGA	0.438													15	49					0	0	0.000566183	0	0
PCLO	27445	broad.mit.edu	37	7	82453723	82453723	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:82453723C>T	uc003uhx.2	-	19	14714	c.14425G>A	c.(14425-14427)GAT>AAT	p.D4809N	PCLO_uc003uhv.2_Missense_Mutation_p.D4809N|PCLO_uc003uht.1_Missense_Mutation_p.D251N|PCLO_uc003uhu.1_Missense_Mutation_p.D230N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4671					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTAGATAAATCAATCAATACC	0.328													23	38					0	0	0.00047179	0	0
PCLO	27445	broad.mit.edu	37	7	82579037	82579037	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:82579037G>A	uc003uhx.2	-	6	11156	c.10867C>T	c.(10867-10869)CTT>TTT	p.L3623F	PCLO_uc003uhv.2_Missense_Mutation_p.L3623F|PCLO_uc010lec.2_Missense_Mutation_p.L588F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3554					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGAGTAAAGGACTTTGGGG	0.478													31	55					0	0	0.0024448	0	0
PCLO	27445	broad.mit.edu	37	7	82582358	82582358	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:82582358C>T	uc003uhx.2	-	5	8200	c.7911G>A	c.(7909-7911)CAG>CAA	p.Q2637Q	PCLO_uc003uhv.2_Silent_p.Q2637Q|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2568					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTAGAAGGTCTGTTCTGAAG	0.458													33	49					0	0	0.00058488	0	0
ABCB4	5244	broad.mit.edu	37	7	87037460	87037460	+	Missense_Mutation	SNP	C	G	G	rs140387595	byFrequency	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:87037460C>G	uc003uiv.1	-	25	3248	c.3172G>C	c.(3172-3174)GAG>CAG	p.E1058Q	ABCB4_uc003uiw.1_Missense_Mutation_p.E1058Q|ABCB4_uc003uix.1_Missense_Mutation_p.E1011Q	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1058	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TTCTTCACCTCCAGGCTCAGC	0.532													25	40					0	0	0.00278032	0	0
ADAM22	53616	broad.mit.edu	37	7	87759716	87759716	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:87759716G>A	uc003ujn.2	+	10	846	c.767G>A	c.(766-768)CGG>CAG	p.R256Q	ADAM22_uc003ujj.1_Missense_Mutation_p.R256Q|ADAM22_uc003ujk.1_Missense_Mutation_p.R256Q|ADAM22_uc003ujl.1_Missense_Mutation_p.R256Q|ADAM22_uc003ujm.2_Missense_Mutation_p.R256Q|ADAM22_uc003ujo.2_Missense_Mutation_p.R256Q|ADAM22_uc003ujp.1_Missense_Mutation_p.R308Q	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	256	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			AAAAAACATCGGCTTTCCGTT	0.368													30	59					0	0	0.00058488	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965621	88965621	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:88965621C>T	uc011khi.1	+	4	3863	c.3325C>T	c.(3325-3327)CAT>TAT	p.H1109Y		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1109						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GCATATAAATCATGTAGAGGG	0.368										HNSCC(36;0.09)			19	37					0	0	0.00121646	0	0
SAMD9	54809	broad.mit.edu	37	7	92735124	92735124	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:92735124G>A	uc003umf.2	-	3	543	c.287C>T	c.(286-288)CCT>CTT	p.P96L	SAMD9_uc003umg.2_Missense_Mutation_p.P96L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	96						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGGTCTTTAGGAGCATTTTT	0.388													54	118					0	0	0.000781405	0	0
CCDC132	55610	broad.mit.edu	37	7	92978050	92978050	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:92978050C>T	uc003umo.2	+	24	2363	c.2235C>T	c.(2233-2235)TTC>TTT	p.F745F	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Silent_p.F715F|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Silent_p.F465F	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	745											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			AGTTTGAGTTCCTTCAGCCAC	0.413													31	72					0	0	0.000692331	0	0
PVRIG	79037	broad.mit.edu	37	7	99818436	99818436	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:99818436G>A	uc003uue.2	+	6	1022	c.650G>A	c.(649-651)CGA>CAA	p.R217Q	GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|GATS_uc011kjl.1_Intron|GATS_uc010lgu.2_Intron|PVRIG_uc003uuf.1_Missense_Mutation_p.R217Q	NM_024070	NP_076975	Q6DKI7	PVRIG_HUMAN	poliovirus receptor related immunoglobulin	217						integral to membrane				skin(2)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCGAGAGCACGAGCATGGGTG	0.677													14	14					0	0	0.00185496	0	0
ZAN	7455	broad.mit.edu	37	7	100349913	100349913	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:100349913G>A	uc003uwj.2	+	14	2350	c.2185G>A	c.(2185-2187)GAA>AAA	p.E729K	ZAN_uc003uwk.2_Missense_Mutation_p.E729K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	729	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CATCCCCACAGAAAAATCCAC	0.522													12	21					0	0	0.00136819	0	0
EPHB4	2050	broad.mit.edu	37	7	100421842	100421842	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:100421842G>A	uc003uwn.1	-	2	597	c.106C>T	c.(106-108)CCT>TCT	p.P36S	EPHB4_uc003uwm.1_5'UTR|EPHB4_uc010lhj.1_Missense_Mutation_p.P36S|EPHB4_uc011kkf.1_Missense_Mutation_p.P36S|EPHB4_uc011kkg.1_Missense_Mutation_p.P36S|EPHB4_uc011kkh.1_Missense_Mutation_p.P36S	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	36	Extracellular (Potential).				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					TCCACCTGAGGGAATGTCACC	0.597													40	62					0	0	0.000781405	0	0
SLC12A9	56996	broad.mit.edu	37	7	100460418	100460419	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:100460418_100460419GG>AA	uc003uwp.2	+	13	1969_1970	c.1827_1828GG>AA	c.(1825-1830)GGGGCT>GGAACT	p.A610T	SLC12A9_uc003uwq.2_Missense_Mutation_p.A521T|SLC12A9_uc011kki.1_Missense_Mutation_p.A141T|SLC12A9_uc003uwr.2_Missense_Mutation_p.A346T|SLC12A9_uc003uws.2_Missense_Mutation_p.A141T|SLC12A9_uc003uwt.2_Missense_Mutation_p.A346T|SLC12A9_uc003uwv.2_Missense_Mutation_p.A141T	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	610	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					TGCGCCAGGGGGCTCAGCATCT	0.634													20	52					0	0	6.4e-05	0	0
MOGAT3	346606	broad.mit.edu	37	7	100841986	100841986	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:100841986G>A	uc003uyc.2	-	4	581	c.414C>T	c.(412-414)TTC>TTT	p.F138F	MOGAT3_uc010lhr.2_Silent_p.F138F	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	138	Helical; (Potential).				glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					GGAGCCCCGGGAAGAGCTGGG	0.597													21	33					0	0	0.00047179	0	0
RELN	5649	broad.mit.edu	37	7	103124250	103124250	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:103124250C>T	uc003vca.2	-	62	10191	c.10031G>A	c.(10030-10032)AGC>AAC	p.S3344N	RELN_uc010liz.2_Missense_Mutation_p.S3344N	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3344					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACTGTTGCAGCTGTCCGTCTG	0.448													32	51					0	0	0.00058488	0	0
PIK3CG	5294	broad.mit.edu	37	7	106513203	106513203	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:106513203A>T	uc003vdv.3	+	4	2192	c.2107A>T	c.(2107-2109)ATA>TTA	p.I703L	PIK3CG_uc003vdu.2_Missense_Mutation_p.I703L|PIK3CG_uc003vdw.2_Missense_Mutation_p.I703L	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	703					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						GAGAAGTGAGATAGCCCAGTC	0.448													33	55					0	0	0.00148497	0	0
SLC26A3	1811	broad.mit.edu	37	7	107415298	107415298	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:107415298C>T	uc003ver.2	-	16	1908	c.1697G>A	c.(1696-1698)CGA>CAA	p.R566Q	SLC26A3_uc003ves.2_Missense_Mutation_p.R531Q	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	566	STAS.				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						GCGTAGAATTCGAAGTGGACT	0.398													35	50					0	0	0.00128727	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518396	113518396	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:113518396G>A	uc010ljy.1	-	4	2782	c.2751C>T	c.(2749-2751)TCC>TCT	p.S917S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	917					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TATGATGTTTGGAAAAAGGAG	0.393													25	71					0	0	0.00047179	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518865	113518865	+	Missense_Mutation	SNP	C	T	T	rs62001880	byFrequency	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:113518865C>T	uc010ljy.1	-	4	2313	c.2282G>A	c.(2281-2283)CGA>CAA	p.R761Q		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	761					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CCTGTCACTTCGTGCTGTCTC	0.413													36	81					0	0	0.00222228	0	0
CHRM2	1129	broad.mit.edu	37	7	136700475	136700475	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:136700475C>T	uc003vtf.1	+	4	1486	c.863C>T	c.(862-864)TCA>TTA	p.S288L	CHRM2_uc003vtg.1_Missense_Mutation_p.S288L|CHRM2_uc003vtj.1_Missense_Mutation_p.S288L|CHRM2_uc003vtk.1_Missense_Mutation_p.S288L|CHRM2_uc003vtl.1_Missense_Mutation_p.S288L|CHRM2_uc003vtm.1_Missense_Mutation_p.S288L|CHRM2_uc003vti.1_Missense_Mutation_p.S288L|CHRM2_uc003vto.1_Missense_Mutation_p.S288L|CHRM2_uc003vtn.1_Missense_Mutation_p.S288L|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	288	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GACTCCACCTCAGTCAGTGCT	0.478													29	42					0	0	0.00178596	0	0
DGKI	9162	broad.mit.edu	37	7	137237174	137237174	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:137237174C>T	uc003vtt.2	-	20	2089	c.2088G>A	c.(2086-2088)AGG>AGA	p.R696R	DGKI_uc003vtu.2_Silent_p.R396R	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	696					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						TGGCCTGATTCCTCAGGGAGA	0.493													21	50					0	0	0.00152264	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635712	141635712	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:141635712A>T	uc003vwv.1	-	5	444	c.247T>A	c.(247-249)TTT>ATT	p.F83I	CLEC5A_uc011krm.1_Missense_Mutation_p.F60I|CLEC5A_uc003vww.1_Missense_Mutation_p.F83I|CLEC5A_uc010lnq.1_Missense_Mutation_p.F60I|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	83	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					GATAAGAAAAAACATCTTGCT	0.418													31	34					0	0	0.00209593	0	0
MGAM	8972	broad.mit.edu	37	7	141719039	141719039	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:141719039G>A	uc003vwy.2	+	4	422	c.368G>A	c.(367-369)GGA>GAA	p.G123E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	123	P-type 1.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AATCCCCAGGGAGCTGTAAGT	0.453													44	81					0	0	0.000680045	0	0
MGAM	8972	broad.mit.edu	37	7	141762434	141762434	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:141762434G>A	uc003vwy.2	+	35	4243	c.4189G>A	c.(4189-4191)GAA>AAA	p.E1397K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1397	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTGGAAGAGGGAAATAGAAGA	0.408													15	18					0	0	0.00047179	0	0
PRSS1	5644	broad.mit.edu	37	7	142458429	142458429	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:142458429G>A	uc003wak.2	+	2	81	c.64G>A	c.(64-66)GAC>AAC	p.D22N	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	22			D -> G (in PCTT; increased rate of activation).		digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TGATGATGATGACAAGATCGT	0.532									Hereditary_Pancreatitis				19	136					0	0	0.000720815	0	0
PRSS1	5644	broad.mit.edu	37	7	142459661	142459661	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:142459661A>C	uc003wak.2	+	3	254	c.237A>C	c.(235-237)GAA>GAC	p.E79D	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Missense_Mutation_p.E19D	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	79	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ACAACATCGAAGTCCTGGAGG	0.547									Hereditary_Pancreatitis				7	116					0	0	0.00198382	0	0
TRY6	154754	broad.mit.edu	37	7	142479932	142479932	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:142479932G>A	uc011ksq.1	+	2	147	c.64G>A	c.(64-66)GAC>AAC	p.D22N	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TGATGATGATGACAAGATCGT	0.552													11	133					0	0	0.000308642	0	0
OR2F1	26211	broad.mit.edu	37	7	143657954	143657954	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:143657954G>A	uc003wds.1	+	1	935	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					ATAAAGAGGTGAAGGGGGCCT	0.433													18	31					0	0	0.00152264	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144062336	144062336	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:144062336C>T	uc003wel.2	+	2	2692	c.2574C>T	c.(2572-2574)TCC>TCT	p.S858S	ARHGEF5_uc003wek.2_Silent_p.S858S|ARHGEF5_uc003wem.2_5'Flank	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	858					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					CCCCAAAGTCCAGGGGGAGGA	0.587													7	61					0	0	0.000274275	0	0
ZNF425	155054	broad.mit.edu	37	7	148802061	148802061	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:148802061G>A	uc003wfj.2	-	4	975	c.902C>T	c.(901-903)CCG>CTG	p.P301L		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	301					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GCAGCAGAACGGCCGCTCCCC	0.672													10	19					0	0	0.000673444	0	0
ZNF212	7988	broad.mit.edu	37	7	148947573	148947573	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:148947573C>T	uc003wfp.2	+	2	444	c.348C>T	c.(346-348)AAC>AAT	p.N116N		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			ACGTGGAGAACCTGCTGCGCA	0.612													58	80					0	0	0.000781405	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325450	150325450	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:150325450G>A	uc003whn.2	-	3	660	c.236C>T	c.(235-237)TCC>TTC	p.S79F	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	79							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCGTCTCTGGGAGGTCTTGGT	0.582													49	56					0	0	0.000781405	0	0
ABP1	26	broad.mit.edu	37	7	150553714	150553714	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:150553714G>A	uc003why.1	+	3	4374	c.156G>A	c.(154-156)AAG>AAA	p.K52K	ABP1_uc003whz.1_Silent_p.K52K|ABP1_uc003wia.1_Silent_p.K52K	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	52					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	GGTCCAAGAAGGAGCTGAGGC	0.582													23	35					0	0	0.00047179	0	0
MLL3	58508	broad.mit.edu	37	7	151917674	151917674	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:151917674C>T	uc003wla.2	-	23	3865	c.3646G>A	c.(3646-3648)GTC>ATC	p.V1216I	MLL3_uc003wkz.2_Missense_Mutation_p.V277I	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1216					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GTCTGAAGGACGGCCACGCTA	0.398			N		medulloblastoma								12	41					0	0	0.00244969	0	0
HTR5A	3361	broad.mit.edu	37	7	154862641	154862641	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:154862641C>T	uc003wlu.1	+	1	96	c.32C>T	c.(31-33)TCC>TTC	p.S11F	uc011kvt.1_Intron|uc003wlt.2_Intron	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	11	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		ACCTCCTTTTCCCTCTCCACC	0.597													32	49					0	0	0.00111076	0	0
PTPRN2	5799	broad.mit.edu	37	7	157985158	157985158	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:157985158C>T	uc003wno.2	-	5	531	c.410G>A	c.(409-411)AGG>AAG	p.R137K	PTPRN2_uc003wnp.2_Missense_Mutation_p.R120K|PTPRN2_uc003wnq.2_Missense_Mutation_p.R137K|PTPRN2_uc003wnr.2_Missense_Mutation_p.R99K|PTPRN2_uc011kwa.1_Missense_Mutation_p.R160K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	137	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		ACTGTACCTCCTCTCGCTGCC	0.632													25	40					0	0	0.0024448	0	0
ESYT2	57488	broad.mit.edu	37	7	158528282	158528282	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr7:158528282G>A	uc003wob.1	-	20	2564	c.2498C>T	c.(2497-2499)TCG>TTG	p.S833L	ESYT2_uc003wny.1_RNA|ESYT2_uc003wnz.1_Missense_Mutation_p.S272L|ESYT2_uc003woa.1_Missense_Mutation_p.S410L	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	861	C2 3.					integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						TTCTGGTAACGAAACACTGAA	0.438													30	50					0	0	0.00195071	0	0
CSMD1	64478	broad.mit.edu	37	8	2836242	2836242	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:2836242C>T	uc011kwk.1	-	55	8851	c.8461G>A	c.(8461-8463)GGA>AGA	p.G2821R	CSMD1_uc011kwj.1_Missense_Mutation_p.G2150R|CSMD1_uc010lrg.2_Missense_Mutation_p.G831R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2821	Extracellular (Potential).|Sushi 20.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATACTCATTCCATACTCAAAA	0.448													5	16					0	0	0.000602214	0	0
CSMD1	64478	broad.mit.edu	37	8	3216769	3216769	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:3216769G>A	uc011kwk.1	-	21	3602	c.3212C>T	c.(3211-3213)TCC>TTC	p.S1071F	CSMD1_uc011kwj.1_Missense_Mutation_p.S463F|CSMD1_uc003wqe.2_Missense_Mutation_p.S227F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1071	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGGAAGCAGGAAAACGTCAG	0.557													29	20					0	0	0.00178596	0	0
CSMD1	64478	broad.mit.edu	37	8	3565998	3565998	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:3565998T>C	uc011kwk.1	-	7	1337	c.947A>G	c.(946-948)GAG>GGG	p.E316G		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	316	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGACTTCAACTCAATCGCCTT	0.438													6	55					0	0	0.000274275	0	0
MCPH1	79648	broad.mit.edu	37	8	6302358	6302358	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:6302358A>G	uc003wqi.2	+	8	1183	c.1115A>G	c.(1114-1116)AAG>AGG	p.K372R	MCPH1_uc003wqh.2_Missense_Mutation_p.K372R|MCPH1_uc011kwl.1_Missense_Mutation_p.K324R	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	372						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		GAAAAATGCAAGAGAAAGAGG	0.522													7	37					0	0	0.00198382	0	0
DEFA4	1669	broad.mit.edu	37	8	6794346	6794346	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:6794346C>A	uc003wqu.1	-	2	127	c.76G>T	c.(76-78)GGT>TGT	p.G26C		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	26					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GCCTCATCACCTCTTGCCTGG	0.577													16	35					1.5739e-10	6.92427e-10	0.000422831	1	0
XKR6	286046	broad.mit.edu	37	8	10756103	10756104	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:10756103_10756104AG>GA	uc003wtk.1	-	3	1311_1312	c.1284_1285CT>TC	c.(1282-1287)TTCTGC>TTTCGC	p.C429R		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	429	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TTAAACCAGCAGAAAATGTACA	0.48													14	19					0	0	6.4e-05	0	0
SGCZ	137868	broad.mit.edu	37	8	14412253	14412253	+	Missense_Mutation	SNP	C	T	T	rs77000161		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:14412253C>T	uc003wwq.2	-	2	882	c.222G>A	c.(220-222)ATG>ATA	p.M74I	SGCZ_uc010lss.2_Missense_Mutation_p.M61I	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	61	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CAGTGAAATTCATAACTTTCA	0.328													16	48					0	0	0.000308642	0	0
MSR1	4481	broad.mit.edu	37	8	16001079	16001079	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:16001079C>T	uc003wwz.2	-	8	1219	c.1021G>A	c.(1021-1023)GGA>AGA	p.G341R	MSR1_uc010lsu.2_Missense_Mutation_p.G359R|MSR1_uc003wxa.2_Missense_Mutation_p.G341R|MSR1_uc003wxb.2_Missense_Mutation_p.G341R|MSR1_uc011kxz.1_Missense_Mutation_p.G115R	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	341	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		AATGTGTTTCCACTCCCCTTT	0.348													19	37					0	0	0.00047179	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23003354	23003354	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:23003354G>A	uc003xcz.1	-	5	655	c.563C>T	c.(562-564)TCC>TTC	p.S188F		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	188	Extracellular (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		TTTCCCAGTGGAACTGGCAGC	0.522													46	45					0	0	0.000781405	0	0
LOXL2	4017	broad.mit.edu	37	8	23155621	23155621	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:23155621C>T	uc003xdh.1	-	14	2599	c.2260G>A	c.(2260-2262)GAA>AAA	p.E754K	LOXL2_uc010lty.1_Silent_p.A255A	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	754					aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		TCCGTCTCTTCGCTGAAGGAA	0.557													19	17					0	0	0.00152264	0	0
ADAM28	10863	broad.mit.edu	37	8	24207392	24207392	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:24207392T>G	uc003xdy.2	+	19	2089	c.2006T>G	c.(2005-2007)GTT>GGT	p.V669G	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.V356G	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	669	Helical; (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TCCATTGTGGTTGGGGTGCTG	0.502													7	124					0	0	0.000157383	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24257753	24257753	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:24257753C>T	uc003xdz.2	+	11	1302	c.1082C>T	c.(1081-1083)CCT>CTT	p.P361L	ADAMDEC1_uc010lub.2_Missense_Mutation_p.P282L|ADAMDEC1_uc011lab.1_Missense_Mutation_p.P282L	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	361	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CTTGGTATGCCTGATGTTCCA	0.398													14	31					0	0	0.000308642	0	0
CDCA2	157313	broad.mit.edu	37	8	25343304	25343304	+	Silent	SNP	T	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:25343304T>C	uc003xep.1	+	11	1874	c.1395T>C	c.(1393-1395)TTT>TTC	p.F465F	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Silent_p.F465F|CDCA2_uc003xeq.1_Silent_p.F450F|CDCA2_uc003xer.1_Silent_p.F128F	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	465					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AAGTATCATTTGCCGTTCTCA	0.313													23	48					0	0	0.000586117	0	0
ADAM18	8749	broad.mit.edu	37	8	39496021	39496021	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:39496021C>T	uc003xni.2	+	10	865	c.865C>T	c.(865-867)CCT>TCT	p.P289S	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.P265S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	289	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGCAACATTTCCTGGCACTGT	0.274													26	41					0	0	0.0024448	0	0
ADAM2	2515	broad.mit.edu	37	8	39624518	39624518	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:39624518G>T	uc003xnj.2	-	14	1431	c.1356C>A	c.(1354-1356)TGC>TGA	p.C452*	ADAM2_uc003xnk.2_Nonsense_Mutation_p.C433*|ADAM2_uc011lck.1_Nonsense_Mutation_p.C452*|ADAM2_uc003xnl.2_Nonsense_Mutation_p.C326*	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	452	Extracellular (Potential).|Disintegrin.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CAGGGAGGTCGCATTCTTCAA	0.398													35	66					2.75727e-19	1.21815e-18	0.000953801	1	0
IDO2	169355	broad.mit.edu	37	8	39806781	39806781	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:39806781C>T	uc010lwy.1	+	2	378	c.136C>T	c.(136-138)CTG>TTG	p.L46L	IDO2_uc003xno.1_RNA	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	33					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						TCCAGATTCTCTGGTAAGGAT	0.383													4	5					0	0	0.00024832	0	0
SLC20A2	6575	broad.mit.edu	37	8	42294860	42294860	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:42294860G>A	uc010lxl.2	-	8	1864	c.1170C>T	c.(1168-1170)ACC>ACT	p.T390T	SLC20A2_uc010lxm.2_Silent_p.T390T|SLC20A2_uc003xpe.2_Silent_p.T390T|SLC20A2_uc011lcu.1_Silent_p.T192T	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	390	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AAATGGCTGCGGTGTAGCAGG	0.607													44	62					0	0	0.00285205	0	0
SLC20A2	6575	broad.mit.edu	37	8	42297144	42297144	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:42297144G>A	uc010lxl.2	-	7	1452	c.758C>T	c.(757-759)TCA>TTA	p.S253L	SLC20A2_uc010lxm.2_Missense_Mutation_p.S253L|SLC20A2_uc003xpe.2_Missense_Mutation_p.S253L|SLC20A2_uc011lcu.1_Missense_Mutation_p.S55L	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	253	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AGATACTCGTGATAAAGCACC	0.393													26	44					0	0	0.001512	0	0
TRIM55	84675	broad.mit.edu	37	8	67064740	67064740	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:67064740A>T	uc003xvv.2	+	8	1340	c.1114A>T	c.(1114-1116)AAC>TAC	p.N372Y	TRIM55_uc003xvu.2_Missense_Mutation_p.N372Y|TRIM55_uc003xvw.2_Missense_Mutation_p.N372Y|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	372						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			AGAAGATGAAAACCCAGAAAA	0.368													33	41					0	0	0.000953801	0	0
KCNB2	9312	broad.mit.edu	37	8	73848737	73848737	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:73848737G>A	uc003xzb.2	+	3	1735	c.1147G>A	c.(1147-1149)GGC>AGC	p.G383S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	383	Selectivity filter (By similarity).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GACCACTGTTGGCTATGGTGA	0.453													34	55					0	0	0.000692331	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616580	77616580	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:77616580C>T	uc003yav.2	+	2	644	c.257C>T	c.(256-258)GCC>GTC	p.A86V	ZFHX4_uc003yat.1_Missense_Mutation_p.A86V|ZFHX4_uc003yau.1_Missense_Mutation_p.A86V|ZFHX4_uc003yaw.1_Missense_Mutation_p.A86V	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	86						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AACGAATGTGCCACTTCTTTT	0.507										HNSCC(33;0.089)			48	95					0	0	0.000781405	0	0
RALYL	138046	broad.mit.edu	37	8	85774565	85774565	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:85774565C>T	uc003ycq.3	+	7	864	c.448C>T	c.(448-450)CCC>TCC	p.P150S	RALYL_uc003ycr.3_Missense_Mutation_p.P150S|RALYL_uc003ycs.3_Missense_Mutation_p.P150S|RALYL_uc010lzy.2_Missense_Mutation_p.P139S|RALYL_uc003yct.3_Missense_Mutation_p.P163S|RALYL_uc003ycu.3_Missense_Mutation_p.P77S|RALYL_uc003ycv.3_Missense_Mutation_p.P62S	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	150							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						GCCTCCACCTCCCCGTGCAGT	0.493													4	13					0	0	0.00024832	0	0
WWP1	11059	broad.mit.edu	37	8	87439898	87439898	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:87439898G>A	uc003ydt.2	+	11	1464	c.1184G>A	c.(1183-1185)AGA>AAA	p.R395K	WWP1_uc010mai.2_Missense_Mutation_p.R171K	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	395	WW 2.				central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						GATGATCGTAGAAGAGTTTAT	0.373													23	51					0	0	0.000586117	0	0
CNGB3	54714	broad.mit.edu	37	8	87616424	87616424	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:87616424C>T	uc003ydx.2	-	15	1724	c.1678G>A	c.(1678-1680)GAA>AAA	p.E560K	CNGB3_uc010maj.2_Missense_Mutation_p.E422K	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	560	Cytoplasmic (Potential).|cGMP (By similarity).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATATACATTTCCTTGCCAATT	0.338													15	31					0	0	0.000308642	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110453035	110453035	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:110453035G>A	uc003yne.2	+	33	4157	c.4053G>A	c.(4051-4053)AGG>AGA	p.R1351R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1351	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TCACCATAAGGGGTTTTGGAT	0.378										HNSCC(38;0.096)			62	120					0	0	0.000781405	0	0
SLC30A8	169026	broad.mit.edu	37	8	118175718	118175718	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:118175718T>G	uc003yoh.2	+	6	1008	c.778T>G	c.(778-780)TTG>GTG	p.L260V	SLC30A8_uc010mcz.2_Missense_Mutation_p.L211V|SLC30A8_uc011lia.1_Missense_Mutation_p.L211V|SLC30A8_uc003yog.2_Missense_Mutation_p.L211V	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	260	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CATCCTGGTCTTGGCCAGCAC	0.403													38	468					0	0	0.000781405	0	0
LRRC6	23639	broad.mit.edu	37	8	133595957	133595957	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:133595957C>T	uc003ytk.2	-	11	1284	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	404						cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TTTGTTTGTTCTCTGCTCCTG	0.403													22	42					0	0	0.00047179	0	0
PTK2	5747	broad.mit.edu	37	8	141745357	141745357	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:141745357G>A	uc003yvu.2	-	22	2253	c.2023C>T	c.(2023-2025)CAG>TAG	p.Q675*	PTK2_uc003yvo.2_Nonsense_Mutation_p.Q303*|PTK2_uc011ljq.1_Nonsense_Mutation_p.Q370*|PTK2_uc003yvp.2_Nonsense_Mutation_p.Q343*|PTK2_uc003yvq.2_Nonsense_Mutation_p.Q201*|PTK2_uc003yvr.2_Nonsense_Mutation_p.Q615*|PTK2_uc003yvs.2_Nonsense_Mutation_p.Q675*|PTK2_uc003yvt.2_Nonsense_Mutation_p.Q697*|PTK2_uc003yvv.2_Nonsense_Mutation_p.Q575*|PTK2_uc011ljr.1_Nonsense_Mutation_p.Q675*|MIR151_hsa-mir-151|MI0000809_5'Flank	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	675	Protein kinase.				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TACCTGAGCTGAGCTTTAAGT	0.522													7	10					0	0	0.00198382	0	0
PLEC	5339	broad.mit.edu	37	8	144997235	144997235	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:144997235G>A	uc003zaf.1	-	31	7443	c.7273C>T	c.(7273-7275)CAA>TAA	p.Q2425*	PLEC_uc003zab.1_Nonsense_Mutation_p.Q2288*|PLEC_uc003zac.1_Nonsense_Mutation_p.Q2292*|PLEC_uc003zad.2_Nonsense_Mutation_p.Q2288*|PLEC_uc003zae.1_Nonsense_Mutation_p.Q2256*|PLEC_uc003zag.1_Nonsense_Mutation_p.Q2266*|PLEC_uc003zah.2_Nonsense_Mutation_p.Q2274*|PLEC_uc003zaj.2_Nonsense_Mutation_p.Q2315*	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2425	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCAGCCTCTTGGGCCGCCACA	0.642													4	14					0	0	0.000602214	0	0
SPATC1	375686	broad.mit.edu	37	8	145095179	145095179	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:145095179C>T	uc011lkw.1	+	2	683	c.581C>T	c.(580-582)TCT>TTT	p.S194F	SPATC1_uc011lkx.1_Missense_Mutation_p.S194F	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	194										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTGGCTGTCTCTCTGAGCAGC	0.667													14	26					0	0	0.000566183	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145830929	145830929	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr8:145830929G>A	uc003zdt.1	-	3	626	c.71C>T	c.(70-72)TCG>TTG	p.S24L	ARHGAP39_uc011llk.1_Missense_Mutation_p.S24L|ARHGAP39_uc003zds.1_Missense_Mutation_p.S24L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	24					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CCGAGTGTTCGACCCTGGAAT	0.612													16	29					0	0	0.00121646	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971017	21971017	+	Missense_Mutation	SNP	G	A	A	rs121913386		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:21971017G>A	uc003zpk.2	-	2	553	c.341C>T	c.(340-342)CCC>CTC	p.P114L	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.A169A	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	114	ANK 4.		P -> L (in non-small cell lung carcinoma).|P -> S (found in some patients with melanoma; loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.P114L(21)|p.?(13)|p.P114H(3)|p.H83fs*2(2)|p.P114S(2)|p.A68fs*3(1)|p.P114P(1)|p.V115fs*11(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CAGGTCCACGGGCAGACGGCC	0.731	P114L(SKMEL30_SKIN)|P114L(WM983B_SKIN)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			36	24					0	0	0.00170553	0	0
KIAA1161	57462	broad.mit.edu	37	9	34372240	34372240	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:34372240C>T	uc003zue.3	-	3	869	c.702G>A	c.(700-702)GCG>GCA	p.A234A		NM_020702	NP_065753	Q6NSJ0	K1161_HUMAN	hypothetical protein LOC57462	234	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|breast(1)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		TGATGGCGGCCGCGCGCGAAG	0.652													3	4					0	0	0.00024832	0	0
LOC442421	442421	broad.mit.edu	37	9	66499716	66499716	+	Missense_Mutation	SNP	A	G	G	rs141617852	by1000genomes	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:66499716A>G	uc004aee.1	+	1	526	c.526A>G	c.(526-528)AAT>GAT	p.N176D	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						CCTGGAGCCCAATCTGCTGGA	0.607													9	44					0	0	0.000673444	0	0
PCSK5	5125	broad.mit.edu	37	9	78803520	78803520	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:78803520C>T	uc004ajz.2	+	18	2847	c.2309C>T	c.(2308-2310)TCC>TTC	p.S770F	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Missense_Mutation_p.S44F	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	770	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TGCTCTGTCTCCTGTGAAGAT	0.517													24	13					0	0	0.00106085	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325114	79325114	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:79325114G>A	uc010mpk.2	-	8	2200	c.2076C>T	c.(2074-2076)AGC>AGT	p.S692S		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	692					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TATCAATGGAGCTTGGCTTAT	0.448													6	5					0	0	0.00116845	0	0
SYK	6850	broad.mit.edu	37	9	93629429	93629429	+	Missense_Mutation	SNP	G	A	A	rs143341039		TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:93629429G>A	uc004aqz.2	+	7	1068	c.863G>A	c.(862-864)GGA>GAA	p.G288E	SYK_uc004aqy.2_Missense_Mutation_p.G288E|SYK_uc004ara.2_Intron|SYK_uc004arb.2_Intron|SYK_uc004arc.2_Missense_Mutation_p.G288E|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	288	Linker.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TCAGCGGGTGGAATAATCTCA	0.443			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								48	32					0	0	0.000781405	0	0
MURC	347273	broad.mit.edu	37	9	103340465	103340465	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:103340465C>T	uc004bba.2	+	1	130	c.40C>T	c.(40-42)CAC>TAC	p.H14Y		NM_001018116	NP_001018126	Q5BKX8	MURC_HUMAN	muscle-related coiled-coil protein	14					cell differentiation|muscle organ development|transcription, DNA-dependent					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0461)				TGATAAAATCCACCAGAATCG	0.433													22	11					0	0	0.00047179	0	0
GRIN3A	116443	broad.mit.edu	37	9	104433273	104433273	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:104433273C>T	uc004bbp.1	-	3	2022	c.1421G>A	c.(1420-1422)GGA>GAA	p.G474E	GRIN3A_uc004bbq.1_Missense_Mutation_p.G474E	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	474	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CATTGGCTTTCCCATGGGGTC	0.502													64	51					0	0	0.000781405	0	0
OR13C4	138804	broad.mit.edu	37	9	107289416	107289416	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:107289416G>A	uc011lvn.1	-	1	75	c.75C>T	c.(73-75)ATC>ATT	p.I25I		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAAAGAAAATGATCTCAAGTT	0.418													26	9					0	0	0.000586117	0	0
FKBP15	23307	broad.mit.edu	37	9	115947059	115947059	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:115947059G>A	uc004bgs.2	-	16	1642	c.1524C>T	c.(1522-1524)CTC>CTT	p.L508L	FKBP15_uc010muu.1_Silent_p.L572L|FKBP15_uc004bgr.2_5'Flank|FKBP15_uc011lxc.1_Silent_p.L89L|FKBP15_uc011lxd.1_Silent_p.L440L|FKBP15_uc010mut.1_Silent_p.L376L	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	508					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						CTTCAGTCATGAGAAATGAAG	0.413													6	4					0	0	0.00198382	0	0
AMBP	259	broad.mit.edu	37	9	116840465	116840465	+	Silent	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:116840465A>G	uc004bie.3	-	1	288	c.25T>C	c.(25-27)TTG>CTG	p.L9L	AMBP_uc011lxk.1_5'Flank|AMBP_uc010mvc.1_RNA	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	9					cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	CTCAGCAGCAAGAGCAGGGCC	0.617													26	23					0	0	0.001512	0	0
SH2D3C	10044	broad.mit.edu	37	9	130507374	130507374	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:130507374G>A	uc004bsc.2	-	7	1411	c.1269C>T	c.(1267-1269)ACC>ACT	p.T423T	SH2D3C_uc010mxo.2_Silent_p.T263T|SH2D3C_uc004bry.2_Silent_p.T265T|SH2D3C_uc004brz.3_Silent_p.T69T|SH2D3C_uc011mak.1_Silent_p.T69T|SH2D3C_uc004bsa.2_Silent_p.T266T|SH2D3C_uc004bsb.2_Silent_p.T355T	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	423					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						CATGGACACGGGTTACTGCAG	0.627													5	8					0	0	0.00116845	0	0
WDR34	89891	broad.mit.edu	37	9	131398016	131398016	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:131398016C>T	uc004bvq.1	-	5	858	c.734G>A	c.(733-735)TGG>TAG	p.W245*	WDR34_uc004bvs.1_Nonsense_Mutation_p.W236*|WDR34_uc004bvr.1_Nonsense_Mutation_p.W245*	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	245	WD 1.					cytoplasm				central_nervous_system(2)|skin(1)	3						GCTCAGGTCCCACACCAACAC	0.672													5	0					0	0	0.000602214	0	0
C9orf78	51759	broad.mit.edu	37	9	132595788	132595788	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:132595788G>A	uc004byp.2	-	4	276	c.204C>T	c.(202-204)CCC>CCT	p.P68P	C9orf78_uc004byo.2_5'UTR|C9orf78_uc004byq.1_Silent_p.P14P|USP20_uc004bys.2_5'Flank|USP20_uc004byr.2_5'Flank|USP20_uc004byt.1_5'Flank	NM_016520	NP_057604	Q9NZ63	CI078_HUMAN	chromosome 9 open reading frame 78	68											0		Ovarian(14;0.00556)				TCATCTGAAAGGGATCATCCT	0.398													28	14					0	0	0.00209593	0	0
DBH	1621	broad.mit.edu	37	9	136508583	136508583	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:136508583G>A	uc004cel.2	+	4	802	c.793G>A	c.(793-795)GAA>AAA	p.E265K		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	265	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CCACCACATGGAAGTCTTCCA	0.657													21	9					0	0	0.000586117	0	0
ABCA2	20	broad.mit.edu	37	9	139906452	139906452	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:139906452G>A	uc011mem.1	-	34	5524	c.5376C>T	c.(5374-5376)GTC>GTT	p.V1792V	ABCA2_uc011mel.1_Silent_p.V1793V|ABCA2_uc004ckl.1_Silent_p.V1723V|ABCA2_uc004ckm.1_Silent_p.V1823V	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1792	Helical; (Potential).				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TGGCGATGACGACATCCGTGC	0.637													23	6					0	0	0.000720815	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071154	141071154	+	Missense_Mutation	SNP	T	C	C	rs150819761	by1000genomes	TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr9:141071154T>C	uc004com.2	+	4	818	c.557T>C	c.(556-558)GTC>GCC	p.V186A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTGAACATGGTCCCGTTTCCC	0.632													6	22					0	0	0.000157383	0	0
ZBED1	9189	broad.mit.edu	37	X	2406967	2406967	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:2406967G>A	uc004cqg.2	-	2	1995	c.1794C>T	c.(1792-1794)TTC>TTT	p.F598F	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.F598F	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	598						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCAGCAGGGGGAAGAGGGCCA	0.647													38	35					0	0	0.00111076	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839446	27839446	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:27839446A>G	uc004dbw.2	+	3	250	c.23A>G	c.(22-24)AAA>AGA	p.K8R		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	8										lung(1)|breast(1)|central_nervous_system(1)	3						CAGAAGAGTAAACTCCGTGCC	0.527													13	9					0	0	0.00185496	0	0
FAM47A	158724	broad.mit.edu	37	X	34149264	34149264	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:34149264C>T	uc004ddg.2	-	1	1165	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	378										ovary(4)|central_nervous_system(1)	5						TTGGAAGGCTCCGCGTGGAGA	0.637													16	6					0	0	0.000566183	0	0
Unknown	0	broad.mit.edu	37	X	48159065	48159065	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:48159065C>T	uc010nib.1	-	6	553	c.466_splice	c.e6+1	p.G156_splice		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		ATTTCCTCTTCCCAGATGCCT	0.532													56	20					0	0	0.000781405	0	0
GSPT2	23708	broad.mit.edu	37	X	51488475	51488475	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:51488475C>T	uc004dpl.2	+	1	1979	c.1753C>T	c.(1753-1755)CGT>TGT	p.R585C		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	585					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					ATGCATTGCTCGTTTAAGGAC	0.423													28	9					0	0	0.00209593	0	0
ZC4H2	55906	broad.mit.edu	37	X	64139036	64139036	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:64139036G>A	uc004dvu.2	-	4	535	c.447C>T	c.(445-447)CCC>CCT	p.P149P	ZC4H2_uc004dvv.2_Silent_p.P126P|ZC4H2_uc011mov.1_Silent_p.P126P|ZC4H2_uc011mow.1_Intron|ZC4H2_uc004dvw.1_3'UTR	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	149							metal ion binding|protein binding			ovary(1)	1						CAGGGATGGGGGGCTCCTGAG	0.562													17	5					0	0	0.00121646	0	0
HEPH	9843	broad.mit.edu	37	X	65427071	65427071	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:65427071C>T	uc011moz.1	+	14	2395	c.2335C>T	c.(2335-2337)CTC>TTC	p.L779F	HEPH_uc004dwn.2_Missense_Mutation_p.L779F|HEPH_uc004dwo.2_Missense_Mutation_p.L509F|HEPH_uc010nkr.2_Missense_Mutation_p.L587F|HEPH_uc011mpa.1_Missense_Mutation_p.L779F|HEPH_uc010nks.2_Missense_Mutation_p.L68F	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	776	Extracellular (Potential).|Plastocyanin-like 5.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CAAGGATGGGCTCCTGGGTTC	0.448													18	8					0	0	0.00229938	0	0
MED12	9968	broad.mit.edu	37	X	70356322	70356322	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:70356322G>A	uc004dyy.2	+	37	5416	c.5217G>A	c.(5215-5217)CTG>CTA	p.L1739L	MED12_uc011mpq.1_Silent_p.L1739L|MED12_uc004dyz.2_Silent_p.L1739L|MED12_uc004dza.2_Silent_p.L1586L|MED12_uc010nla.2_Silent_p.L365L	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1739	Pro-rich.|Interaction with CTNNB1 and GLI3.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CCTATTACCTGGAGCCACTGC	0.637													9	3					0	0	0.000442599	0	0
XIST	7503	broad.mit.edu	37	X	73064337	73064337	+	RNA	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:73064337G>A	uc004ebm.1	-	1		c.8252C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATTCAAATAGGATAAGCCATG	0.428													27	6					0	0	0.00127121	0	0
ZNF711	7552	broad.mit.edu	37	X	84526624	84526624	+	Silent	SNP	A	G	G			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:84526624A>G	uc004eeo.2	+	9	2423	c.2076A>G	c.(2074-2076)AAA>AAG	p.K692K	ZNF711_uc004eep.2_Silent_p.K692K|ZNF711_uc004eeq.2_Silent_p.K738K|ZNF711_uc011mqy.1_Silent_p.K291K	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	692	C2H2-type 10.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						ATGAGCTAAAAAAACATATGA	0.358													11	34					0	0	0.000673444	0	0
ARMCX3	51566	broad.mit.edu	37	X	100880802	100880802	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:100880802G>C	uc004ehz.1	+	5	1366	c.833G>C	c.(832-834)AGG>ACG	p.R278T	ARMCX3_uc004eia.1_Missense_Mutation_p.R278T|ARMCX3_uc004eib.1_Missense_Mutation_p.R278T|ARMCX3_uc004eic.1_Missense_Mutation_p.R278T	NM_016607	NP_057691	Q9UH62	ARMX3_HUMAN	armadillo repeat containing, X-linked 3	278						integral to membrane	binding			ovary(1)|lung(1)	2						GCCATGACTAGGGAACTGCTC	0.393													3	50					0	0	6.4e-05	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111697979	111697979	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:111697979C>T	uc004epo.1	+	3	464	c.23C>T	c.(22-24)TCA>TTA	p.S8L		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	8							nucleic acid binding|zinc ion binding			ovary(1)	1						ACGAAATCATCATCTACCATG	0.468													43	10					0	0	0.000781405	0	0
HTR2C	3358	broad.mit.edu	37	X	114141186	114141186	+	Silent	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:114141186G>A	uc004epu.1	+	6	1313	c.585G>A	c.(583-585)AGG>AGA	p.R195R	HTR2C_uc010nqc.1_Silent_p.R195R|HTR2C_uc004epv.1_Missense_Mutation_p.G164R	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	195	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TTGGACTGAGGGACGAAGAAA	0.458													54	18					0	0	0.000781405	0	0
IGSF1	3547	broad.mit.edu	37	X	130408600	130408600	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:130408600C>T	uc004ewd.2	-	18	3962	c.3724G>A	c.(3724-3726)GAT>AAT	p.D1242N	IGSF1_uc004ewe.3_Missense_Mutation_p.D1236N|IGSF1_uc004ewf.2_Missense_Mutation_p.D1222N	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1242	Extracellular (Potential).|Ig-like C2-type 12.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TCCAGGGGATCACTAGGCTCT	0.542													51	20					0	0	0.000781405	0	0
F9	2158	broad.mit.edu	37	X	138644029	138644029	+	Silent	SNP	C	T	T			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:138644029C>T	uc004fas.1	+	8	1214	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	F9_uc004fat.1_Silent_p.F357F	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	395	Peptidase S1.		F -> I (in HEMB).|F -> L (in HEMB).		blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	ACAACATGTTCTGTGCTGGCT	0.443													60	14					0	0	0.000781405	0	0
SPANXN2	494119	broad.mit.edu	37	X	142803707	142803707	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chrX:142803707G>A	uc004fbz.2	-	1	810	c.56C>T	c.(55-57)TCC>TTC	p.S19F		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	19										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGTTATTGGATTCACAGGG	0.274													48	20					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				9	35	---	---	---	---					
R3HDM2	22864	broad.mit.edu	37	12	57663166	57663167	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr12:57663166_57663167delGA	uc009zpm.1	-	14	1646_1647	c.1611_1612delTC	c.(1609-1614)TCTCACfs	p.S537fs	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Frame_Shift_Del_p.S232fs|R3HDM2_uc001snr.2_Frame_Shift_Del_p.S264fs|R3HDM2_uc001sns.2_Frame_Shift_Del_p.S537fs|R3HDM2_uc001snt.2_Frame_Shift_Del_p.S551fs|R3HDM2_uc009zpn.1_Frame_Shift_Del_p.S160fs	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	537_538	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						GCCACCGGGTGAGAGAGAGGTC	0.525													26	32	---	---	---	---					
MKL1	57591	broad.mit.edu	37	22	40814743	40814743	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZQ-06A-11D-A197-08	TCGA-FS-A1ZQ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a88ce52-7543-40bc-9e8f-3341a4a1df15	b5103c25-5000-4999-a2da-99e0276b9428	g.chr22:40814743delC	uc003ayv.1	-	9	1906	c.1699delG	c.(1699-1701)GCCfs	p.A567fs	MKL1_uc003ayw.1_Frame_Shift_Del_p.A567fs|MKL1_uc010gye.1_Frame_Shift_Del_p.A567fs|MKL1_uc010gyf.1_Frame_Shift_Del_p.A517fs	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	567	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ggggcgggggcgggggcgggC	0.602			T	RBM15	acute megakaryocytic leukemia								2	4	---	---	---	---					
