Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF12	390999	broad.mit.edu	37	1	12835290	12835290	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:12835290C>T	uc001aui.2	+	1	307	c.280C>T	c.(280-282)CGC>TGC	p.R94C		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	94										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGAAGGTTCGCCCCAGGTG	0.592000													20	10					0	0	0.00047179	0	0
C1orf89	79363	broad.mit.edu	37	1	16559022	16559022	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:16559022C>T	uc001ayd.2	-	4	932	c.510G>A	c.(508-510)AGG>AGA	p.R170R		NM_030907	NP_112169	Q9BU20	RSG1_HUMAN	hypothetical protein LOC79363	170	Small GTPase-like.				cellular protein localization|cilium assembly|exocytosis|protein transport|regulation of exocytosis|regulation of vesicle fusion|small GTPase mediated signal transduction	cilium|microtubule basal body	GTP binding				0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.2e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		CGATGACCATCCTGACGACAC	0.597000													12	3					0	0	0.000308642	0	0
CCDC30	728621	broad.mit.edu	37	1	43042868	43042868	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:43042868G>A	uc009vwk.1	+	7	1143	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K	CCDC30_uc001chm.2_Missense_Mutation_p.E43K|CCDC30_uc001chn.2_Missense_Mutation_p.E134K|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Missense_Mutation_p.E159K	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	345	Potential.										0						GCTGGTTCAGGAGAAATCTAA	0.393000													11	15					0	0	0.000673444	0	0
FAM46C	54855	broad.mit.edu	37	1	118165657	118165657	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:118165657G>A	uc001ehe.2	+	2	366	c.167G>A	c.(166-168)CGC>CAC	p.R56H		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	56											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		CAGACCGTCCGCAGTCGGCTG	0.567000										Multiple Myeloma(3;1.13e-06)			22	27					0	0	0.000229342	0	0
GON4L	54856	broad.mit.edu	37	1	155736300	155736300	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:155736300G>A	uc001flz.2	-	21	3061	c.2964C>T	c.(2962-2964)TTC>TTT	p.F988F	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Silent_p.F988F|GON4L_uc009wrh.1_Silent_p.F988F|GON4L_uc001fma.1_Silent_p.F988F|GON4L_uc001fmb.3_Silent_p.F184F|GON4L_uc001fmc.2_Silent_p.F988F|GON4L_uc001fmd.3_Silent_p.F988F|GON4L_uc009wri.2_Silent_p.F574F	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	988				F -> S (in Ref. 1; AAR01262 and 2; CAD97829).	regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCTTCCTGGGGAAACGGGTGG	0.537000													42	56					0	0	0.000319135	0	0
CD5L	922	broad.mit.edu	37	1	157803144	157803144	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:157803144G>A	uc001frk.3	-	5	1020	c.877C>T	c.(877-879)CCC>TCC	p.P293S		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	293	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CTGAAGGAGGGAGAGAGGGAC	0.587000													29	78					0	0	0.000227799	0	0
OR10T2	128360	broad.mit.edu	37	1	158368474	158368474	+	Silent	SNP	C	T	T	rs145637310		TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:158368474C>T	uc010pih.1	-	1	783	c.783G>A	c.(781-783)CGG>CGA	p.R261R		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TGGACTTGGGCCGCAGATAGA	0.512000													11	47					0	0	0.00010058	0	0
EDEM3	80267	broad.mit.edu	37	1	184672095	184672095	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:184672095G>A	uc010pok.1	-	19	2500	c.2239C>T	c.(2239-2241)CTG>TTG	p.L747L	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Silent_p.L747L	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	747	PA.				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						ATCTGGAACAGAGGGGCAGTA	0.418000													17	34					0	0	0.000132079	0	0
CHIT1	1118	broad.mit.edu	37	1	203188818	203188818	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:203188818C>T	uc001gzn.2	-	8	985	c.889G>A	c.(889-891)GAA>AAA	p.E297K	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_Missense_Mutation_p.E88K|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.E288K	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	297					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						ATCCCTCCTTCCTTGGTGAAG	0.587000													22	61					0	0	0.000720815	0	0
RYR2	6262	broad.mit.edu	37	1	237813241	237813241	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:237813241C>T	uc001hyl.1	+	50	7697	c.7577C>T	c.(7576-7578)CCA>CTA	p.P2526L		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2526	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCCGTCTTGCCATTGTTAACA	0.468000													60	148					0	0	0.000781405	0	0
MPP7	143098	broad.mit.edu	37	10	28420536	28420536	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:28420536C>T	uc001iua.1	-	8	804	c.400G>A	c.(400-402)GAA>AAA	p.E134K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E134K|MPP7_uc009xla.2_Missense_Mutation_p.E134K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	134					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						ACTGAGTCTTCCTCATCGTCA	0.418000													36	13					0	0	0.00111076	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													4	36					0	0	0.00024832	0	0
TACR2	6865	broad.mit.edu	37	10	71174729	71174729	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:71174729C>T	uc001jpn.2	-	2	1154	c.559G>A	c.(559-561)GAA>AAA	p.E187K		NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	187	Extracellular (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	CCGCTGTCTTCGGGCCAGGCC	0.527000													28	6					0	0	0.000279167	0	0
LDB3	11155	broad.mit.edu	37	10	88476097	88476097	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:88476097C>T	uc001kdv.2	+	9	1268	c.1245C>T	c.(1243-1245)ACC>ACT	p.T415T	LDB3_uc010qml.1_Silent_p.T352T|LDB3_uc010qmm.1_Silent_p.T420T|LDB3_uc001kdu.2_Silent_p.T305T|LDB3_uc009xsz.2_Silent_p.T44T|LDB3_uc009xta.1_5'Flank	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	415						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						CTGCATCTACCTACAGCCCGT	0.353000													18	11					0	0	0.000175454	0	0
PDE6C	5146	broad.mit.edu	37	10	95400680	95400680	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:95400680G>A	uc001kiu.3	+	14	1879	c.1741G>A	c.(1741-1743)GGA>AGA	p.G581R		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	581					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TTTTTAGACAGGAAGATTAAA	0.368000													19	4					0	0	0.000958276	0	0
SYCE1	93426	broad.mit.edu	37	10	135368926	135368926	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:135368926C>T	uc001lno.2	-	12	952	c.847G>A	c.(847-849)GAA>AAA	p.E283K	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.E155K|SYCE1_uc009ybn.2_Missense_Mutation_p.E283K|SYCE1_uc001lnn.2_Missense_Mutation_p.E247K	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	283	Gln-rich.|Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CCATGCTTTTCCAGCTCTTCC	0.398000													31	22					0	0	0.000409698	0	0
LOC650368	650368	broad.mit.edu	37	11	3429978	3429978	+	RNA	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr11:3429978G>A	uc010qxs.1	+	11		c.1077G>A			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						AGAACCTGCGGGAGTCGCAGC	0.527000													14	9					0	0	0.000308642	0	0
OR52N2	390077	broad.mit.edu	37	11	5841865	5841865	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr11:5841865G>A	uc010qzp.1	+	1	300	c.300G>A	c.(298-300)CTG>CTA	p.L100L	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACGCCTGCCTGGCCCAGATGT	0.517000													7	82					0	0	8.12818e-05	0	0
OR52E6	390078	broad.mit.edu	37	11	5862851	5862851	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr11:5862851C>T	uc010qzq.1	-	1	277	c.277G>A	c.(277-279)GAA>AAA	p.E93K	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGATATTTCCTTGATATTG	0.473000													13	78					0	0	0.000219431	0	0
RAG1	5896	broad.mit.edu	37	11	36595652	36595652	+	Silent	SNP	C	T	T	rs141654332	by1000genomes	TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr11:36595652C>T	uc001mwu.3	+	2	922	c.798C>T	c.(796-798)ATC>ATT	p.I266I	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	266	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TGAAGAAGATCGCCAACTGCA	0.473000									Familial_Hemophagocytic_Lymphohistiocytosis				5	45					0	0	3.59834e-05	0	0
GPR137	56834	broad.mit.edu	37	11	64056722	64056722	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr11:64056722C>T	uc001nzg.1	+	8	1447	c.1139C>T	c.(1138-1140)CCC>CTC	p.P380L	GPR137_uc010rni.1_Missense_Mutation_p.P438L|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	380	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						CACCCTAGGCCCCTGTGCCAA	0.647000													30	27					0	0	0.000227799	0	0
GAPDH	2597	broad.mit.edu	37	12	6647267	6647267	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr12:6647267G>A	uc001qop.1	+	9	1041	c.939G>A	c.(937-939)TGG>TGA	p.W313*	GAPDH_uc009zep.1_Nonsense_Mutation_p.W271*|GAPDH_uc001qoq.1_Nonsense_Mutation_p.W238*|GAPDH_uc001qor.1_Nonsense_Mutation_p.W272*|GAPDH_uc001qos.1_Nonsense_Mutation_p.W313*|GAPDH_uc001qot.1_Nonsense_Mutation_p.W313*|GAPDH_uc001qou.1_Nonsense_Mutation_p.W272*|GAPDH_uc001qov.1_Nonsense_Mutation_p.W271*|GAPDH_uc001qow.1_Nonsense_Mutation_p.W266*|GAPDH_uc001qox.1_Nonsense_Mutation_p.W139*	NM_002046	NP_002037	P04406	G3P_HUMAN	glyceraldehyde-3-phosphate dehydrogenase	313					gluconeogenesis|glycolysis|neuron apoptosis|peptidyl-cysteine S-trans-nitrosylation|protein stabilization	cytosol|membrane|nucleus|perinuclear region of cytoplasm	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|peptidyl-cysteine S-nitrosylase activity|protein binding				0					NADH(DB00157)	CATCTTCTAGGTATGACAACG	0.567000											OREG0021628	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	48					0	0	0.000184323	0	0
ATF7IP	55729	broad.mit.edu	37	12	14610194	14610194	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr12:14610194G>A	uc001rbw.2	+	8	2281	c.2123G>A	c.(2122-2124)AGT>AAT	p.S708N	ATF7IP_uc010shs.1_Intron|ATF7IP_uc001rbu.2_Missense_Mutation_p.S708N|ATF7IP_uc001rbv.1_Missense_Mutation_p.S707N|ATF7IP_uc001rbx.2_Missense_Mutation_p.S707N|ATF7IP_uc010sht.1_Intron|ATF7IP_uc001rby.3_Missense_Mutation_p.S708N|ATF7IP_uc001rca.2_Missense_Mutation_p.S708N	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	708	Interaction with SETDB1.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GTAAGCGAGAGTGCACCACCA	0.363000													11	15					0	0	0.00010058	0	0
DDN	23109	broad.mit.edu	37	12	49392427	49392427	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr12:49392427G>A	uc001rsv.1	-	2	250	c.232C>T	c.(232-234)CCA>TCA	p.P78S	uc001rsw.2_5'UTR	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	78						dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						GGCGGCTGTGGGGATCCCGGG	0.731000													3	4					0	0	0.000602214	0	0
RIMBP2	23504	broad.mit.edu	37	12	130898827	130898827	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr12:130898827G>A	uc001uil.2	-	14	2659	c.2495C>T	c.(2494-2496)TCT>TTT	p.S832F		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	832						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GAAGTCTGGAGAAAGGCGGTC	0.577000													36	59					0	0	0.000319135	0	0
FARP1	10160	broad.mit.edu	37	13	98996100	98996100	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr13:98996100C>T	uc001vnj.2	+	3	592	c.256C>T	c.(256-258)CCT>TCT	p.P86S	FARP1_uc001vnh.2_Missense_Mutation_p.P86S	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	86	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CCTCGAGTTTCCTGATCACAA	0.463000													34	55					0	0	0.000409698	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817500	23817500	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr14:23817500G>A	uc001wjl.2	-	5	764	c.708C>T	c.(706-708)TTC>TTT	p.F236F	SLC22A17_uc010akk.2_Silent_p.F18F|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Silent_p.F236F	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	236	Helical; (Potential).				siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CGGACTCCAGGAACAAACCAG	0.617000													45	59					0	0	0.000781405	0	0
MYH7	4625	broad.mit.edu	37	14	23887583	23887583	+	Silent	SNP	C	T	T	rs144465613	byFrequency	TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr14:23887583C>T	uc001wjx.2	-	30	4111	c.4005G>A	c.(4003-4005)TCG>TCA	p.S1335S	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1335	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CATGCCGGGCCGACTGCAGTG	0.662000													6	33					0	0	0.000442599	0	0
TTLL5	23093	broad.mit.edu	37	14	76135802	76135802	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr14:76135802C>T	uc001xrx.2	+	3	323	c.118C>T	c.(118-120)CCA>TCA	p.P40S	TTLL5_uc001xrw.1_Missense_Mutation_p.P40S|TTLL5_uc010ask.1_Missense_Mutation_p.P40S|TTLL5_uc001xrv.2_Missense_Mutation_p.P40S	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	40					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		CAGGAGAATTCCAGTTTTGGT	0.448000													95	119					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	106829696	106829696	+	RNA	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr14:106829696G>A	uc010tyt.1	-	323		c.12809C>T			uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						CTCGACTCTTGAGGGACGGGT	0.557000													67	76					0	0	0.000781405	0	0
GCNT3	9245	broad.mit.edu	37	15	59911184	59911184	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr15:59911184G>A	uc002age.2	+	3	1196	c.747G>A	c.(745-747)AGG>AGA	p.R249R	GCNT3_uc002agd.2_Silent_p.R249R	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	249	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						TGAATGGGAGGAATAGCATGG	0.458000													88	89					0	0	0.000781405	0	0
CSPG4	1464	broad.mit.edu	37	15	75982869	75982869	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr15:75982869G>A	uc002baw.2	-	3	630	c.537C>T	c.(535-537)AGC>AGT	p.S179S		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	179	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 1.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GCCGGAGGAGGCTGCGGCCAT	0.642000													25	44					0	0	0.00106085	0	0
TPSB2	64499	broad.mit.edu	37	16	1279725	1279726	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr16:1279725_1279726GG>AA	uc002cky.2	-	3	97_98	c.74_75CC>TT	c.(73-75)GCC>GTT	p.A25V	TPSB2_uc010brk.1_RNA|TPSB2_uc002ckx.2_5'UTR	NM_024164	NP_077078	P20231	TRYB2_HUMAN	tryptase beta 2 precursor	25					proteolysis	extracellular region	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CTCGCTGCAGGGCCTGGCCTGG	0.703000													7	14					0	0	6.4e-05	0	0
PRSS36	146547	broad.mit.edu	37	16	31153047	31153047	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr16:31153047C>T	uc002ebd.2	-	11	1815	c.1756G>A	c.(1756-1758)GGT>AGT	p.G586S	PRSS36_uc010vff.1_Missense_Mutation_p.G361S|PRSS36_uc010vfg.1_Missense_Mutation_p.G581S|PRSS36_uc010vfh.1_Missense_Mutation_p.G586S	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	586					proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						TGCTCACCACCATGCTCTGTG	0.647000													25	23					0	0	0.000227799	0	0
ITGAX	3687	broad.mit.edu	37	16	31384649	31384649	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr16:31384649G>A	uc002ebu.1	+	20	2513	c.2446G>A	c.(2446-2448)GGA>AGA	p.G816R	ITGAX_uc002ebt.2_Missense_Mutation_p.G816R	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	816	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGACTCCTACGGAACCACCAT	0.607000													15	26					0	0	0.000308642	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31487500	31487500	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr16:31487500C>T	uc002ecd.1	+	8	908	c.882C>T	c.(880-882)ATC>ATT	p.I294I	TGFB1I1_uc002ece.1_Silent_p.I277I|TGFB1I1_uc010caq.1_Silent_p.I133I	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	294	LIM zinc-binding 2.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						ACCAGCCCATCCGACACGTGA	0.667000													21	38					0	0	0.00047179	0	0
ZNF18	7566	broad.mit.edu	37	17	11881421	11881421	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:11881421G>A	uc002gng.1	-	9	2108	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	ZNF18_uc002gnh.1_Silent_p.F501F|ZNF18_uc002gni.1_Silent_p.F500F	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	501	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		ATCTCTGAATGAAACTTTTCT	0.438000													15	36					0	0	0.000308642	0	0
NCOR1	9611	broad.mit.edu	37	17	16024512	16024512	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:16024512G>A	uc002gpo.2	-	16	1946	c.1706C>T	c.(1705-1707)CCC>CTC	p.P569L	NCOR1_uc002gpn.2_Missense_Mutation_p.P569L|NCOR1_uc002gpp.1_Missense_Mutation_p.P460L|NCOR1_uc002gpr.2_Missense_Mutation_p.P460L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	569					cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TCGCCCCCGGGGTGTGGCTTG	0.537000													49	72					0	0	0.000781405	0	0
RAI1	10743	broad.mit.edu	37	17	17698878	17698878	+	Silent	SNP	C	G	G			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:17698878C>G	uc002grm.2	+	3	3085	c.2616C>G	c.(2614-2616)TCC>TCG	p.S872S	RAI1_uc002grn.1_Silent_p.S872S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	872						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		AGGAGTACTCCTCCCTATGTG	0.657000													9	3					0	0	0.000274275	0	0
SLFN12	55106	broad.mit.edu	37	17	33738744	33738744	+	Missense_Mutation	SNP	G	C	C			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:33738744G>C	uc002hji.3	-	4	1727	c.1350C>G	c.(1348-1350)GAC>GAG	p.D450E	SLFN12_uc002hjj.3_Missense_Mutation_p.D450E|SLFN12_uc010cts.2_Missense_Mutation_p.D450E	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	450							ATP binding	p.D450N(1)		skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGGAGGACTGTCCTGGGAAA	0.473000													3	91					0	0	6.4e-05	0	0
MLLT6	4302	broad.mit.edu	37	17	36872623	36872623	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:36872623C>T	uc002hqi.3	+	10	1053	c.1040C>T	c.(1039-1041)TCG>TTG	p.S347L	MLLT6_uc002hqj.2_Intron|MLLT6_uc002hqk.3_5'Flank	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	347					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					TGCACAGTCTCGTCCCTGCAG	0.567000			T	MLL	AL								4	9					0	0	0.00024832	0	0
C17orf104	284071	broad.mit.edu	37	17	42744063	42744063	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:42744063G>T	uc010czv.2	+	5	784	c.784G>T	c.(784-786)GAA>TAA	p.E262*	C17orf104_uc002igy.1_Nonsense_Mutation_p.E96*|C17orf104_uc002igz.3_Nonsense_Mutation_p.E96*|C17orf104_uc010wja.1_RNA|C17orf104_uc002iha.2_Nonsense_Mutation_p.E96*	NM_001145080	NP_001138552	A2RUB1	CQ104_HUMAN	hypothetical protein LOC284071	262										central_nervous_system(1)	1						AACATTCCAAGAATATCCACT	0.363000													18	16					8.00594e-06	0.000112302	0.000958276	1	0
TXNDC2	84203	broad.mit.edu	37	18	9886764	9886764	+	Silent	SNP	C	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr18:9886764C>A	uc002koi.3	+	2	737	c.288C>A	c.(286-288)ACC>ACA	p.T96T	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Silent_p.T29T	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	96					cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CAGCAAACACCAGCCATCCCA	0.572000													12	18					6.40141e-05	0.000889854	0.000978159	1	0
CCDC102B	79839	broad.mit.edu	37	18	66564491	66564491	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr18:66564491G>A	uc002lkk.2	+	8	1312	c.1089G>A	c.(1087-1089)TGG>TGA	p.W363*	CCDC102B_uc002lki.2_Nonsense_Mutation_p.W363*|CCDC102B_uc002lkj.1_Nonsense_Mutation_p.W363*	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	363	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				CCTCGGAGTGGGACAAGAGGG	0.428000													29	60					0	0	0.00058488	0	0
OR10H4	126541	broad.mit.edu	37	19	16060553	16060553	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr19:16060553C>T	uc010xov.1	+	1	736	c.736C>T	c.(736-738)CAC>TAC	p.H246Y		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GTGTGTATCCCACCTCACTGT	0.502000													42	62					0	0	0.000319135	0	0
TBCB	1155	broad.mit.edu	37	19	36616653	36616653	+	Missense_Mutation	SNP	C	T	T	rs1801989		TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr19:36616653C>T	uc002odg.1	+	6	1279	c.704C>T	c.(703-705)CCG>CTG	p.P235L	TBCB_uc002odh.1_Missense_Mutation_p.P216L	NM_001281	NP_001272	Q99426	TBCB_HUMAN	cytoskeleton associated protein 1	235					'de novo' posttranslational protein folding|cell differentiation|nervous system development	cytoplasm|microtubule	protein binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGGGACTTCCCGGAGGAGGAC	0.572000													37	77					0	0	0.000953801	0	0
TEX101	83639	broad.mit.edu	37	19	43922417	43922417	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr19:43922417G>A	uc010xwo.1	+	6	813	c.618G>A	c.(616-618)AGG>AGA	p.R206R	TEX101_uc002owk.2_Silent_p.R224R	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	206						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				TGTTTGTGAGGGAAGCGTGCC	0.527000													40	52					0	0	0.000270559	0	0
GRLF1	2909	broad.mit.edu	37	19	47424434	47424434	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr19:47424434A>T	uc010ekv.2	+	1	2502	c.2502A>T	c.(2500-2502)GAA>GAT	p.E834D		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	834					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		AGCGGATTGAACTGTCTGTTC	0.433000													43	73					0	0	0.000781405	0	0
GPR32	2854	broad.mit.edu	37	19	51274504	51274504	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr19:51274504G>A	uc010ycf.1	+	1	647	c.647G>A	c.(646-648)GGG>GAG	p.G216E		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	216	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CACATTATAGGGACCATTGGC	0.567000													17	24					0	0	0.000422831	0	0
KCNS3	3790	broad.mit.edu	37	2	18112675	18112675	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:18112675G>A	uc002rcv.2	+	3	851	c.400G>A	c.(400-402)GAC>AAC	p.D134N	KCNS3_uc002rcw.2_Missense_Mutation_p.D134N	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	134	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAAGGACTGGGACCAGAAAAG	0.502000													23	40					0	0	0.000375601	0	0
LOXL3	84695	broad.mit.edu	37	2	74763971	74763971	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:74763971G>A	uc002smp.1	-	5	849	c.777C>T	c.(775-777)TCC>TCT	p.S259S	LOXL3_uc002smo.1_Intron|LOXL3_uc010ffm.1_Silent_p.S259S|LOXL3_uc002smq.1_Intron|LOXL3_uc010ffn.1_Intron	NM_032603	NP_115992	P58215	LOXL3_HUMAN	lysyl oxidase-like 3 precursor	259	SRCR 2.					extracellular space|membrane	copper ion binding|protein-lysine 6-oxidase activity|scavenger receptor activity				0						AGAACTCCAGGGAACAGAGGG	0.662000													21	40					0	0	0.000229342	0	0
Unknown	0	broad.mit.edu	37	2	89156800	89156800	+	RNA	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:89156800G>A	uc002sti.1	-	1		c.3475C>T			uc002stj.1_RNA					Homo sapiens cDNA FLJ46682 fis, clone TRACH3011082, moderately similar to Ig kappa chain V-III region HAH precursor.																		GTCCCCTGTGGAAAAAGGGTC	0.547000													9	10					0	0	0.000274275	0	0
RGPD3	653489	broad.mit.edu	37	2	107040225	107040225	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:107040225C>T	uc010ywi.1	-	20	4255	c.4198G>A	c.(4198-4200)GAC>AAC	p.D1400N		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1400	RanBD1 2.				intracellular transport		binding			ovary(1)	1						AATACTTGGTCCCTTCTCATC	0.363000													120	206					0	0	0.000781405	0	0
MARCO	8685	broad.mit.edu	37	2	119752093	119752093	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:119752093C>T	uc002tln.1	+	17	1692	c.1560C>T	c.(1558-1560)GTC>GTT	p.V520V	MARCO_uc010yyf.1_Silent_p.V442V	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	520	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGTGCAGCGTCTGACCCGGAA	0.607000													23	27					0	0	0.000375601	0	0
XIRP2	129446	broad.mit.edu	37	2	168105430	168105430	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:168105430C>T	uc002udx.2	+	8	7546	c.7528C>T	c.(7528-7530)CCC>TCC	p.P2510S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2335S|XIRP2_uc010fpq.2_Missense_Mutation_p.P2288S|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2335					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACTTCAGCACCCAGGAAAAA	0.368000													31	40					0	0	0.000692331	0	0
ZNF385B	151126	broad.mit.edu	37	2	180308110	180308110	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr2:180308110G>A	uc002unn.3	-	10	1887	c.1283C>T	c.(1282-1284)TCC>TTC	p.S428F	ZNF385B_uc002unj.2_Missense_Mutation_p.S326F|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Missense_Mutation_p.S325F|ZNF385B_uc002unm.2_Missense_Mutation_p.S352F	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	428						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			CAGCGCTGAGGACACGGCTGC	0.627000													9	17					0	0	0.000673444	0	0
WFDC8	90199	broad.mit.edu	37	20	44187499	44187499	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr20:44187499G>T	uc002xow.2	-	3	348	c.269C>A	c.(268-270)CCC>CAC	p.P90H	WFDC8_uc002xox.2_Missense_Mutation_p.P90H	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	90	WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				ACCTTGAAAGGGATCCATGCA	0.502000													63	45					3.09758e-43	4.50903e-42	0.000781405	1	0
ACOT8	10005	broad.mit.edu	37	20	44485829	44485829	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr20:44485829G>A	uc002xqa.1	-	1	207	c.126C>T	c.(124-126)TTC>TTT	p.F42F	ACOT8_uc010zxe.1_Silent_p.F42F|ACOT8_uc002xqc.1_Missense_Mutation_p.S34L|ACOT8_uc010zxf.1_Silent_p.F42F|ZSWIM3_uc002xqd.2_5'Flank|ZSWIM3_uc010zxg.1_5'Flank	NM_005469	NP_005460	O14734	ACOT8_HUMAN	peroxisomal acyl-CoA thioesterase 1 isoform a	42					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|interspecies interaction between organisms|peroxisome organization	peroxisomal matrix	acetyl-CoA hydrolase activity|acyl-CoA thioesterase activity|carboxylesterase activity|choloyl-CoA hydrolase activity|protein binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CCGGCTACCTGAAGAGATCCT	0.662000													21	57					0	0	0.00047179	0	0
COL20A1	57642	broad.mit.edu	37	20	61941745	61941745	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr20:61941745G>A	uc011aau.1	+	11	1376	c.1276G>A	c.(1276-1278)GGA>AGA	p.G426R	COL20A1_uc011aav.1_Missense_Mutation_p.G247R	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	426	Fibronectin type-III 2.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GGTGGTGGAGGGACCCGCCGC	0.672000													5	13					0	0	8.12818e-05	0	0
GMEB2	26205	broad.mit.edu	37	20	62236122	62236122	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr20:62236122G>A	uc002yfp.1	-	2	682	c.203C>T	c.(202-204)TCC>TTC	p.S68F	GMEB2_uc002yfo.1_5'UTR|GMEB2_uc002yfq.1_Missense_Mutation_p.S68F	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	68					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			GAGCTGGGAGGAGGCTGTGAA	0.572000													33	92					0	0	0.000692331	0	0
ZBTB46	140685	broad.mit.edu	37	20	62407266	62407266	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr20:62407266C>T	uc002ygv.1	-	3	1188	c.987G>A	c.(985-987)GAG>GAA	p.E329E	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	329					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					GCTCGGCCCTCTCTCCTCGGC	0.642000													30	26					0	0	0.000491102	0	0
UCKL1	54963	broad.mit.edu	37	20	62576048	62576048	+	Missense_Mutation	SNP	T	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr20:62576048T>A	uc010gkn.2	-	6	737	c.694A>T	c.(694-696)ATC>TTC	p.I232F	UCKL1_uc002yhj.2_5'Flank|UCKL1_uc011abm.1_Missense_Mutation_p.I217F|UCKL1_uc011abn.1_RNA|UCKL1_uc011abo.1_RNA|MIR647_hsa-mir-647|MI0003662_5'Flank	NM_017859	NP_060329	Q9NWZ5	UCKL1_HUMAN	uridine-cytidine kinase 1-like 1	232					interspecies interaction between organisms	endoplasmic reticulum|nucleus	ATP binding|phosphotransferase activity, alcohol group as acceptor|protein binding|uridine kinase activity				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					ACCAGGCGGATGTCGGAGTCT	0.607000													38	37					0	0	0.000781405	0	0
GGT1	2678	broad.mit.edu	37	22	25011077	25011077	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr22:25011077C>T	uc003aan.1	+	7	852	c.365C>T	c.(364-366)TCG>TTG	p.S122L	GGT1_uc003aas.1_Missense_Mutation_p.S122L|GGT1_uc003aat.1_Missense_Mutation_p.S122L|GGT1_uc003aau.1_Missense_Mutation_p.S122L|GGT1_uc003aav.1_Missense_Mutation_p.S122L|GGT1_uc003aaw.1_Missense_Mutation_p.S122L|GGT1_uc003aax.1_Missense_Mutation_p.S122L	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	122	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	TTCAACAGCTCGGAGCAGTCC	0.652000													17	20					0	0	0.000175454	0	0
SCN10A	6336	broad.mit.edu	37	3	38768522	38768522	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr3:38768522G>A	uc003ciq.2	-	16	2662	c.2662C>T	c.(2662-2664)CTG>TTG	p.L888L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	888	II.|Helical; Name=S6 of repeat II; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TTCAATAGCAGGGCGATGAAC	0.552000													42	40					0	0	0.000680045	0	0
VPRBP	9730	broad.mit.edu	37	3	51450468	51450468	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr3:51450468G>A	uc003dbe.1	-	21	4257	c.4089C>T	c.(4087-4089)GAC>GAT	p.D1363D	VPRBP_uc003dbf.1_Silent_p.D639D	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	1363					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		CAAGATAGCAGTCTTTGGTGT	0.413000													18	28					0	0	0.000175454	0	0
SPATA16	83893	broad.mit.edu	37	3	172834933	172834933	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr3:172834933C>T	uc003fin.3	-	2	747	c.589G>A	c.(589-591)GGA>AGA	p.G197R		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	197					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CTGAACTGTCCTGCTGCCAAG	0.408000													42	84					0	0	0.000781405	0	0
LAMP3	27074	broad.mit.edu	37	3	182870284	182870284	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr3:182870284G>A	uc003flh.3	-	3	991	c.767C>T	c.(766-768)TCA>TTA	p.S256L		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	256	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TCTCCGAGGTGAAAAAACCTA	0.453000													88	122					0	0	0.000781405	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361257	70361257	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr4:70361257T>C	uc003hek.3	-	1	370	c.323A>G	c.(322-324)TAT>TGT	p.Y108C	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.Y108C	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	108					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TTGTGAAAAATATGACCAAAA	0.318000													12	14					0	0	0.000978159	0	0
FAT4	79633	broad.mit.edu	37	4	126373002	126373002	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr4:126373002C>T	uc003ifj.3	+	9	10831	c.10831C>T	c.(10831-10833)CCT>TCT	p.P3611S	FAT4_uc011cgp.1_Missense_Mutation_p.P1909S|FAT4_uc003ifi.1_Missense_Mutation_p.P1089S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3611	Cadherin 34.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAATGACAATCCTTCACAGTC	0.428000													35	55					0	0	0.000270559	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457825	5457825	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr5:5457825C>T	uc003jdm.3	+	12	1294	c.1072C>T	c.(1072-1074)CCG>TCG	p.P358S		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	358	Pro-rich.									ovary(1)|central_nervous_system(1)	2						ATCACCTCACCCGGGTTCCTT	0.458000													96	150					0	0	0.000781405	0	0
DNAH5	1767	broad.mit.edu	37	5	13871819	13871819	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr5:13871819C>T	uc003jfd.2	-	23	3494	c.3452G>A	c.(3451-3453)GGA>GAA	p.G1151E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1151	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCTTCTTTTCCCTTTTGCCA	0.353000									Kartagener_syndrome				18	22					0	0	0.00074312	0	0
APBB3	10307	broad.mit.edu	37	5	139940274	139940274	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr5:139940274G>A	uc003lgd.1	-	10	1356	c.997C>T	c.(997-999)CCC>TCC	p.P333S	SRA1_uc010jfm.2_5'Flank|SRA1_uc003lga.2_5'Flank|APBB3_uc003lgb.1_Missense_Mutation_p.P105S|APBB3_uc003lgc.1_Missense_Mutation_p.P105S|APBB3_uc003lge.1_Missense_Mutation_p.P326S|APBB3_uc003lgf.1_RNA|APBB3_uc010jfp.1_RNA|APBB3_uc011czi.1_Missense_Mutation_p.P105S|APBB3_uc010jfq.1_Intron	NM_133172	NP_573418	O95704	APBB3_HUMAN	amyloid beta precursor protein-binding, family	328	PID 2.					actin cytoskeleton|cytoplasm				ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCATGGTGGGGACCCAGGCA	0.597000													13	15					0	0	0.000308642	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431171	140431171	+	Missense_Mutation	SNP	T	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr5:140431171T>A	uc003lik.1	+	1	193	c.116T>A	c.(115-117)ATG>AAG	p.M39K		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	39	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCAGAGGAAATGGAGAGCGGC	0.537000													14	17					0	0	0.000422831	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603189	140603189	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr5:140603189G>A	uc003ljb.2	+	1	112	c.112G>A	c.(112-114)GAA>AAA	p.E38K	PCDHB14_uc011dal.1_Intron	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	38	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTGGCAGAGGAAACAGAAAT	0.502000													19	22					0	0	0.000132079	0	0
GMCL1L	64396	broad.mit.edu	37	5	177613781	177613781	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr5:177613781C>T	uc003mit.1	-	1	653	c.520G>A	c.(520-522)GTC>ATC	p.V174I		NR_003281				SubName: Full=Germ cell-less homolog 1 (Drosophila); SubName: Full=Putative uncharacterized protein FLJ13057;												0						TTTATCAAGACATCATCTCGA	0.438000													30	38					0	0	0.00106085	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928048	31928049	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr6:31928048_31928049CC>TT	uc003nyn.1	+	4	677_678	c.288_289CC>TT	c.(286-291)GCCCCA>GCTTCA	p.P97S	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Intron|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	97						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TCCTGGGAGCCCCAGTCCCATC	0.520000													94	397					0	0	6.4e-05	0	0
BRD2	6046	broad.mit.edu	37	6	32945938	32945938	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr6:32945938C>T	uc003ocn.3	+	10	3315	c.1614C>T	c.(1612-1614)TCC>TCT	p.S538S	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Silent_p.S538S|BRD2_uc003ocp.3_Silent_p.S418S|BRD2_uc010juh.2_Silent_p.S538S	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	538					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						CTGCTCTGTCCCAGGGTCCAA	0.418000													18	39					0	0	0.00074312	0	0
ALDH8A1	64577	broad.mit.edu	37	6	135254135	135254135	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr6:135254135T>C	uc003qew.2	-	5	681	c.628A>G	c.(628-630)ACC>GCC	p.T210A	ALDH8A1_uc003qex.2_Missense_Mutation_p.T210A|ALDH8A1_uc010kgh.2_Missense_Mutation_p.T42A|ALDH8A1_uc011ecx.1_Missense_Mutation_p.T160A	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	210	NAD (Potential).				retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		CTGGGCCCGGTTCCAAACACA	0.542000													18	24					0	0	0.000175454	0	0
C6orf118	168090	broad.mit.edu	37	6	165706950	165706950	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr6:165706950C>T	uc003qum.3	-	6	1108	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	358	Potential.										0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		ATCTCCAGTTCACTTCTGAGT	0.438000													60	171					0	0	0.000781405	0	0
MAGI2	9863	broad.mit.edu	37	7	78150951	78150951	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr7:78150951C>T	uc003ugx.2	-	4	804	c.550G>A	c.(550-552)GGT>AGT	p.G184S	MAGI2_uc003ugy.2_Missense_Mutation_p.G184S|MAGI2_uc011kgr.1_Missense_Mutation_p.G16S|MAGI2_uc011kgs.1_Missense_Mutation_p.G21S	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	184	Guanylate kinase-like.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TTTGGGGTACCGTAGTAATTG	0.383000													53	199					0	0	0.000781405	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764709	92764709	+	Silent	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr7:92764709G>A	uc003umh.1	-	5	1792	c.576C>T	c.(574-576)CTC>CTT	p.L192L	SAMD9L_uc003umj.1_Silent_p.L192L|SAMD9L_uc003umi.1_Silent_p.L192L|SAMD9L_uc010lfb.1_Silent_p.L192L|SAMD9L_uc003umk.1_Silent_p.L192L|SAMD9L_uc010lfc.1_Silent_p.L192L|SAMD9L_uc010lfd.1_Silent_p.L192L|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	192										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGGATCAATGAGATTGAGTG	0.393000													39	205					0	0	0.000953801	0	0
MUC17	140453	broad.mit.edu	37	7	100693870	100693870	+	Silent	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr7:100693870C>T	uc003uxp.1	+	7	12881	c.12828C>T	c.(12826-12828)ATC>ATT	p.I4276I	MUC17_uc010lho.1_Intron	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4276	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAGAGAAAATCACAAAAGTGA	0.473000													66	29					0	0	0.000781405	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				81	39					0	0	0.000781405	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417222	150417222	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr7:150417222G>T	uc003whq.2	+	3	217	c.130G>T	c.(130-132)GGG>TGG	p.G44W	GIMAP1_uc003whp.2_Missense_Mutation_p.G52W	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	44	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGCGCCACTGGGAACAGCAT	0.637000													48	141					1.30916e-28	1.88789e-27	0.000781405	1	0
CSMD1	64478	broad.mit.edu	37	8	2823399	2823399	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr8:2823399T>C	uc011kwk.1	-	59	9571	c.9181A>G	c.(9181-9183)AGC>GGC	p.S3061G	CSMD1_uc011kwj.1_Missense_Mutation_p.S2390G|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3061	Extracellular (Potential).|Sushi 24.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACTGATAGCTCACAGTCTTG	0.488000													3	22					0	0	6.4e-05	0	0
LRP12	29967	broad.mit.edu	37	8	105511616	105511616	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr8:105511616T>C	uc003yma.2	-	4	499	c.404A>G	c.(403-405)GAC>GGC	p.D135G	LRP12_uc003ymb.2_Missense_Mutation_p.D116G	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	135	Extracellular (Potential).|CUB 1.				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGATGTGGTCTTGTGAAGA	0.368000													3	111					0	0	0.00024832	0	0
ZC3H3	23144	broad.mit.edu	37	8	144550575	144550576	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr8:144550575_144550576GG>AA	uc003yyd.2	-	7	2110_2111	c.2081_2082CC>TT	c.(2080-2082)CCC>CTT	p.P694L		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	694	C3H1-type 1.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CCACCTTCTCGGGATCGTGGAT	0.673000													9	27					0	0	6.4e-05	0	0
DMRT3	58524	broad.mit.edu	37	9	990578	990578	+	Missense_Mutation	SNP	G	A	A	rs147923658		TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr9:990578G>A	uc003zgw.1	+	2	1030	c.992G>A	c.(991-993)GGA>GAA	p.G331E		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	331					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TGGTCTGTGGGATCAGCCTTT	0.567000													31	5					0	0	0.000227799	0	0
SMC5	23137	broad.mit.edu	37	9	72879317	72879317	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr9:72879317C>T	uc004ahr.2	+	2	400	c.283C>T	c.(283-285)CTT>TTT	p.L95F		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	95					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						TGCCATTTGCCTTGGTTTAGC	0.383000													32	68					0	0	0.000953801	0	0
ALDH1A1	216	broad.mit.edu	37	9	75524517	75524517	+	Splice_Site	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr9:75524517C>T	uc004ajd.2	-	11	1411	c.1358_splice	c.e11+1	p.W453_splice	ALDH1A1_uc011lsh.1_Splice_Site_p.W374_splice|ALDH1A1_uc011lsg.1_Splice_Site_p.W279_splice	NM_000689	NP_000680	P00352	AL1A1_HUMAN	aldehyde dehydrogenase 1A1						cellular aldehyde metabolic process|ethanol oxidation|xenobiotic metabolic process	cytosol	aldehyde dehydrogenase (NAD) activity|androgen binding|Ras GTPase activator activity|retinal dehydrogenase activity			ovary(3)|lung(1)	4					NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	GTTGGACTTACCACACTGTTC	0.383000													26	38					0	0	0.000586117	0	0
VPS13A	23230	broad.mit.edu	37	9	79959086	79959086	+	Silent	SNP	T	C	C	rs143259810		TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr9:79959086T>C	uc004akr.2	+	51	7304	c.7044T>C	c.(7042-7044)CCT>CCC	p.P2348P	VPS13A_uc004akp.3_Silent_p.P2348P|VPS13A_uc004akq.3_Silent_p.P2348P|VPS13A_uc004aks.2_Silent_p.P2309P	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2348					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CCTTTTGGCCTGAGTATGCTT	0.294000													3	78					0	0	0.00024832	0	0
ZNF41	7592	broad.mit.edu	37	X	47315704	47315704	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chrX:47315704T>C	uc004dhs.3	-	2	359	c.292A>G	c.(292-294)ACA>GCA	p.T98A	ZNF41_uc004dhu.3_Missense_Mutation_p.T90A|ZNF41_uc004dht.3_5'UTR|ZNF41_uc004dhv.3_Missense_Mutation_p.T66A|ZNF41_uc004dhw.3_Missense_Mutation_p.T58A|ZNF41_uc004dhy.3_Missense_Mutation_p.T56A|ZNF41_uc004dhx.3_Missense_Mutation_p.T56A|ZNF41_uc011mlm.1_5'UTR|ZNF41_uc004dhz.2_RNA|ZNF41_uc004dia.2_RNA	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	98	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				TTCTCTAGTGTCACATCCCAG	0.552000													24	8					0	0	0.000878237	0	0
TSPAN6	7105	broad.mit.edu	37	X	99887504	99887504	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chrX:99887504G>A	uc004ega.1	-	6	750	c.647C>T	c.(646-648)TCC>TTC	p.S216F	TSPAN6_uc010nna.1_Missense_Mutation_p.S122F	NM_003270	NP_003261	O43657	TSN6_HUMAN	transmembrane 4 superfamily member 6	216	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	signal transducer activity			ovary(1)	1						AACTCCAAAGGAAATTCCTGC	0.338000													11	1					0	0	0.000151284	0	0
FGF13	2258	broad.mit.edu	37	X	137793186	137793186	+	Translation_Start_Site	SNP	C	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chrX:137793186C>T	uc004fam.2	-	1	642	c.-20G>A	c.(-22--18)CGGTG>CGATG		FGF13_uc004fan.2_Intron|FGF13_uc011mwi.1_Intron|FGF13_uc004faq.2_Intron|FGF13_uc004far.2_Intron|FGF13_uc011mwj.1_Intron|FGF13_uc011mwk.1_Intron|uc004fao.2_5'Flank	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1						cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CCCACCACCACCGCTTCTTTT	0.642000													21	0					0	0	0.000229342	0	0
ITPKB	3707	broad.mit.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	-	-	rs11278152		TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr1:226924876_226924884delCTGCCGCTG	uc010pvo.1	-	2	616_624	c.276_284delCAGCGGCAG	c.(274-285)AGCAGCGGCAGT>AGT	p.92_95SSGS>S	ITPKB_uc001hqh.2_In_Frame_Del_p.92_95SSGS>S	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	92_95							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				GCTCACgctactgccgctgctgccgctgc	0.617													8	13	---	---	---	---					
PTEN	5728	broad.mit.edu	37	10	89693002	89693003	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr10:89693002_89693003insA	uc001kfb.2	+	6	1517_1518	c.486_487insA	c.(484-489)GACAAAfs	p.D162fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	162_163	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.?(2)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.D162G(1)|p.D162H(1)|p.D162V(1)|p.F56fs*2(1)|p.D162fs*8(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		GGACCAGAGACAAAAAGGTAAG	0.332		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			17	10	---	---	---	---					
NLK	51701	broad.mit.edu	37	17	26518151	26518168	+	In_Frame_Del	DEL	TGGAAGAGTTTATACCAG	-	-			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr17:26518151_26518168delTGGAAGAGTTTATACCAG	uc010crj.2	+	9	1553_1570	c.1341_1358delTGGAAGAGTTTATACCAG	c.(1339-1359)ACTGGAAGAGTTTATACCAGT>ACT	p.GRVYTS448del	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	448_453					intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CCACCTCCACTGGAAGAGTTTATACCAGTGACTTTGAG	0.445													18	58	---	---	---	---					
TUBGCP6	85378	broad.mit.edu	37	22	50657854	50657854	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr22:50657854delG	uc003bkb.1	-	19	4859	c.4347delC	c.(4345-4347)CCCfs	p.P1449fs	TUBGCP6_uc003bka.1_Frame_Shift_Del_p.P536fs|TUBGCP6_uc010har.1_Frame_Shift_Del_p.P1441fs|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1449					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GGGGAAGCACGGGGCGCAAAA	0.687													2	4	---	---	---	---					
VILL	50853	broad.mit.edu	37	3	38035430	38035431	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GF-A2C7-01A-11D-A197-08	TCGA-GF-A2C7-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ea4af682-faeb-475f-a84c-2b3858620fc6	2f132c4a-f0c8-4b73-b4d8-9aebf13a6911	g.chr3:38035430_38035431insT	uc003chj.2	+	3	388_389	c.102_103insT	c.(100-105)AACTTTfs	p.N34fs	VILL_uc003chk.1_Frame_Shift_Ins_p.N34fs|VILL_uc003chl.2_Frame_Shift_Ins_p.N34fs|VILL_uc010hgu.2_5'Flank	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	34_35	Gelsolin-like 1.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CTTACGGGAACTTTTTTGAGGA	0.599													40	83	---	---	---	---					
