Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TNFRSF14	8764	genome.wustl.edu	37	1	2491274	2491274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_003820.2	+1	reviewed	p.R106L	0.006	14	0.000	8	0.625	-	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
PLA2G2E	30814	genome.wustl.edu	37	1	20248866	20248866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_014589.1	-1	provisional	p.R71S	0.001	25	0%	15	40%	-	-	benign(0.373)	deleterious(0.04)	neutral(0.468)	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
MACF1	23499	genome.wustl.edu	37	1	39800724	39800724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_033044.2	+1	reviewed	p.A1262T	0.013	56	0%	51	37.3%	-	-	benign(0.235)	-	-	superfamily_SSF75399
MFSD2A	84879	genome.wustl.edu	37	1	40431006	40431006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	ENST00000412699	+1	known	p.R87P	1.000	65	0%	80	45%	-	-	-	-	-	NULL
PDE4B	5142	genome.wustl.edu	37	1	66798171	66798171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001037339.1	+1	reviewed	p.M33I	1.000	74	0%	70	41.4%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
HRNR	388697	genome.wustl.edu	37	1	152193325	152193325	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001009931.1	-1	validated	p.H260	0.000	161	0%	155	45.8%	-	-	-	-	-	NULL
ATP1A2	477	genome.wustl.edu	37	1	160105086	160105086	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_000702.3	+1	reviewed	e15+1	1.000	40	0%	53	24.5%	-	-	-	-	-	-
PIGR	5284	genome.wustl.edu	37	1	207104882	207104882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_002644.3	-1	reviewed	p.E720G	0.004	146	0%	142	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GEN1	348654	genome.wustl.edu	37	2	17962727	17962727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001130009.1	+1	validated	p.V750F	0.000	39	0%	46	26.1%	-	-	benign(0.396)	deleterious(0.01)	deleterious(0.532)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37297524	37297524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_019024.1	-1	validated	p.R259H	1.000	46	0%	89	56.2%	-	-	probably_damaging(0.959)	tolerated(0.23)	neutral(0.444)	superfamily_ARM repeat
USP34	9736	genome.wustl.edu	37	2	61417742	61417742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_014709.3	-1	validated	p.A3214T	1.000	71	0%	139	55.4%	-	-	probably_damaging(0.963)	tolerated(0.76)	neutral(0.407)	NULL
DPP10	57628	genome.wustl.edu	37	2	116548694	116548694	+	Silent	SNP	A	A	G	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_020868.3	+1	validated	p.E523	0.995	64	0%	90	54.4%	-	-	-	-	-	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
PLCL1	5334	genome.wustl.edu	37	2	199011631	199011631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_006226.3	+1	validated	p.R980H	1.000	66	0%	43	51.2%	-	-	unknown(0)	deleterious(0.01)	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	rs58340018		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001103147.1	+1	reviewed	p.Q1235in_frame_del	0.057:0.094:0.124	-	-	-	-	-	-	-	-	-	NULL
THAP4	51078	genome.wustl.edu	37	2	242572814	242572814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_015963.5	-1	validated	p.R253Q	0.135	29	0%	57	14%	-	-	possibly_damaging(0.79)	deleterious(0.04)	deleterious(0.645)	NULL
SEMA3G	56920	genome.wustl.edu	37	3	52475320	52475320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_020163.1	-1	provisional	p.S258L	0.476	15	0%	26	69.2%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
GNL3	26354	genome.wustl.edu	37	3	52721394	52721395	+	Frame_Shift_Ins	INS	-	-	AGAGG	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_014366.4	+1	validated	p.L71fs	1.000:0.997	-	-	-	-	-	-	-	-	-	HMMPfam_GN3L_Grn1
CCDC48	79825	genome.wustl.edu	37	3	128757681	128757681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_024768.2	+1	validated	p.S96L	1.000	35	0%	39	30.8%	-	-	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
LRRIQ4	344657	genome.wustl.edu	37	3	169546669	169546669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001080460.1	+1	provisional	p.Q381H	1.000	53	0%	67	62.7%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_SSF52058
TMPRSS11E	28983	genome.wustl.edu	37	4	69342017	69342017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_014058.3	+1	validated	p.L190F	0.020	67	0%	82	29.3%	-	-	possibly_damaging(0.678)	tolerated(0.08)	deleterious(0.541)	superfamily_Pept_Ser_Cys
SEPT11	55752	genome.wustl.edu	37	4	77936125	77936125	+	Silent	SNP	T	T	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_018243.2	+1	validated	p.F214	1.000	89	0%	77	50.6%	-	-	-	-	-	HMMPfam_Septin,superfamily_SSF52540
SMAD1	4086	genome.wustl.edu	37	4	146463741	146463741	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001003688.1	+1	reviewed	p.T222	0.062	43	0%	32	43.8%	-	-	-	-	-	superfamily_SMAD/FHA domain
FBXW7	55294	genome.wustl.edu	37	4	153249510	153249510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_033632.2	-1	reviewed	p.G423V	1.000	102	0%	124	44.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAP9	79884	genome.wustl.edu	37	4	156296146	156296146	+	Missense_Mutation	SNP	G	G	A	rs188784938	by1000genomes	TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001039580.1	-1	validated	p.R35C	1.000	94	0%	97	43.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM61	391712	genome.wustl.edu	37	4	165891119	165891119	+	Silent	SNP	T	T	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001012414.2	-1	validated	p.A12	0.002	47	0%	39	35.9%	-	-	-	-	-	superfamily_SSF57850
PDZD2	23037	genome.wustl.edu	37	5	32091076	32091076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_178140.2	+1	reviewed	p.V2508M	0.000	19	0%	14	50%	-	-	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
MCC	4163	genome.wustl.edu	37	5	112364713	112364713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001085377.1	-1	reviewed	p.A933S	1.000	65	0%	63	57.1%	-	-	benign(0.096)	tolerated(0.55)	neutral(0.014)	HMMPfam_MCC-bdg_PDZ
KCNN2	3781	genome.wustl.edu	37	5	113699621	113699621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_021614.2	+1	reviewed	p.A169P	1.000	110	0%	115	47.8%	-	-	probably_damaging(0.975)	tolerated(0.11)	deleterious(0.689)	HMMPfam_SK_channel
PCDH12	51294	genome.wustl.edu	37	5	141336244	141336244	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_016580.2	-1	reviewed	p.C391*	0.976	56	0%	50	48%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH12	51294	genome.wustl.edu	37	5	141336245	141336245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_016580.2	-1	reviewed	p.C391Y	0.998	56	0%	55	49.1%	-	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TDP2	51567	genome.wustl.edu	37	6	24654665	24654665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_016614.2	-1	reviewed	p.M204R	1.000	200	0%	270	31.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
DST	667	genome.wustl.edu	37	6	56716267	56716267	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	ENST00000370754	-1	known	p.E185*	1.000	51	0%	58	53.4%	-	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_Calponin-homology domain CH-domain
KIAA1429	25962	genome.wustl.edu	37	8	95511668	95511668	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_015496.3	-1	validated	p.K1388	1.000	93	0%	55	96.4%	-	-	-	-	-	NULL
CELP	1057	genome.wustl.edu	37	9	135962459	135962491	+	Splice_Site	DEL	TGCCCCTGTGCCCCTCACAAGTGACTCTGAGGC	TGCCCCTGTGCCCCTCACAAGTGACTCTGAGGC	-	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	TGCCCCTGTGCCCCTCACAAGTGACTCTGAGGC	TGCCCCTGTGCCCCTCACAAGTGACTCTGAGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	ENST00000421286	+1	known	NULL	0.000:0.003:0.011:0.006:0.007:0.000:0.000:0.000:0.000:0.009:0.050:0.034:0.026:0.020:0.015:0.001:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	-
KIAA1217	56243	genome.wustl.edu	37	10	24802317	24802317	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_019590.3	+1	validated	p.R711*	0.996	60	0%	50	40%	-	-	-	-	-	NULL
OR5P2	120065	genome.wustl.edu	37	11	7817933	7817933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_153444.1	-1	provisional	p.S186C	0.592	47	0%	27	81.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
FIBP	9158	genome.wustl.edu	37	11	65655355	65655355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	ENST00000442885	-1	known	p.P112T	0.997	19	0%	12	41.7%	-	-	-	-	-	NULL
LRFN4	78999	genome.wustl.edu	37	11	66627254	66627254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_024036.4	+1	validated	p.T499R	0.998	18	0%	11	54.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VSIG10	54621	genome.wustl.edu	37	12	118517340	118517340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_019086.5	-1	validated	p.R246C	1.000	66	0%	60	40%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_Immunoglobulin
NBEA	26960	genome.wustl.edu	37	13	35806738	35806738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_015678.4	+1	validated	p.Q1920K	1.000	74	0%	54	42.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
BLM	641	genome.wustl.edu	37	15	91347397	91347397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_000057.2	+1	reviewed	p.V1187L	1.000	50	0%	37	29.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_RQC
TELO2	9894	genome.wustl.edu	37	16	1544376	1544376	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_016111.3	+1	reviewed	p.L32	0.296	18	0%	33	51.5%	-	-	-	-	-	NULL
SRR	63826	genome.wustl.edu	37	17	2227116	2227117	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_021947.1	+1	provisional	p.W325fs	0.341:0.956	-	-	-	-	-	-	-	-	-	NULL
AOC3	8639	genome.wustl.edu	37	17	41004502	41004502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_003734.2	+1	reviewed	p.T381M	0.000	26	0%	20	90%	-	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase
CACNA1G	8913	genome.wustl.edu	37	17	48668879	48668879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_018896.3	+1	validated	p.R846H	1.000	23	0%	34	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MUC16	94025	genome.wustl.edu	37	19	9049153	9049153	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_024690.2	-1	validated	p.T10826	0.000	79	0%	43	97.7%	-	-	-	-	-	NULL
WDR87	83889	genome.wustl.edu	37	19	38385235	38385235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_031951.3	-1	provisional	p.R331W	0.060	42	0%	54	48.1%	-	-	probably_damaging(1)	-	-	superfamily_WD40 repeat-like,PatternScan_C_TYPE_LECTIN_1
DMRTC2	63946	genome.wustl.edu	37	19	42354538	42354538	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	ENST00000427618	+1	known	p.L305*	0.000	45	0%	54	53.7%	-	-	-	-	-	NULL
KLK6	5653	genome.wustl.edu	37	19	51471319	51471319	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_001012964.1	-1	reviewed	e1+2	0.931	56	0%	67	47.8%	-	-	-	-	-	-
ZNF677	342926	genome.wustl.edu	37	19	53747109	53747109	+	Silent	SNP	T	T	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_182609.2	-1	provisional	p.Q19	0.999	65	0%	103	19.4%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SCML2	10389	genome.wustl.edu	37	X	18264814	18264814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_006089.2	-1	validated	p.V569F	0.000	61	0%	58	58.6%	-	-	possibly_damaging(0.903)	tolerated(0.09)	deleterious(0.654)	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27840074	27840074	+	Silent	SNP	T	T	C	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_182506.3	+1	reviewed	p.C217	0.000	53	0%	33	51.5%	-	-	-	-	-	HMMPfam_MAGE
IL1RAPL1	11141	genome.wustl.edu	37	X	29414419	29414419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_014271.3	+1	reviewed	p.G136D	0.988	77	0%	50	46%	-	-	benign(0.042)	tolerated(0.27)	neutral(0.036)	HMMSmart_SM00409,superfamily_Immunoglobulin
ASB12	142689	genome.wustl.edu	37	X	63445396	63445396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_130388.2	-1	reviewed	p.D36E	0.031	48	0%	61	54.1%	-	-	benign(0.016)	tolerated(0.42)	neutral(0.015)	superfamily_ANK
CXorf57	55086	genome.wustl.edu	37	X	105921450	105921450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A1C7-01A-11D-A135-09	TCGA-AX-A1C7-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	653903a8-1ac0-4525-85b5-b2e8e03cbe8c	3f869b7b-79a5-401a-8927-ec7501f44dc9	NM_018015.5	+1	validated	p.Y844N	0.679	71	0%	79	39.2%	-	-	possibly_damaging(0.677)	tolerated(0.18)	neutral(0.297)	NULL
