Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27057973	27057973	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006015.4	+1	reviewed	p.Q561*	1.000	360	0%	316	27.8%	15	20%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27107092	27107095	+	Frame_Shift_Del	DEL	GCCC	GCCC	-	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	GCCC	GCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006015.4	+1	reviewed	p.A2237fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DPYD	1806	genome.wustl.edu	37	1	98039426	98039426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_000110.3	-1	reviewed	p.R410Q	1.000	343	0%	167	22.2%	5	0%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_Pyr_redox_2,superfamily_SSF51971
PROX1	5629	genome.wustl.edu	37	1	214171556	214171556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_002763.3	+1	provisional	p.G560S	1.000	89	0%	90	27.8%	27	74%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_Prox1
OBSCN	84033	genome.wustl.edu	37	1	228467940	228467940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001098623.1	+1	reviewed	p.A2575V	0.277	48	0%	53	22.6%	2	0%	benign(0.052)	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
APOB	338	genome.wustl.edu	37	2	21260108	21260108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_000384.2	-1	reviewed	p.C186F	1.000	206	0%	191	26.7%	0	-	probably_damaging(0.999)	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
C2orf71	388939	genome.wustl.edu	37	2	29295352	29295352	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001029883.1	-1	provisional	p.T592	0.852	65	0%	80	17.5%	0	-	-	-	-	NULL
TTC7A	57217	genome.wustl.edu	37	2	47177665	47177665	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000441914	+1	known	p.R116H	0.072	110	0%	114	27.2%	8	37.5%	-	-	-	NULL
ADD2	119	genome.wustl.edu	37	2	70905924	70905924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001617.3	-1	reviewed	p.R432H	1.000	129	0%	167	27.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
INO80D	54891	genome.wustl.edu	37	2	206874391	206874391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_017759.4	-1	validated	p.R557Q	1.000	320	0%	289	22.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TNS1	7145	genome.wustl.edu	37	2	218678441	218678441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_022648.4	-1	reviewed	p.P1506S	0.998	309	0%	254	29.5%	14	0%	benign(0.264)	deleterious(0.02)	neutral(0.411)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
ATP2B2	491	genome.wustl.edu	37	3	10417136	10417136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001001331.2	-1	reviewed	p.I465T	1.000	25	0%	25	24%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
CTNNB1	1499	genome.wustl.edu	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001098209.1	+1	reviewed	p.S33P	1.000	125	0%	107	29%	551	49.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR52	55779	genome.wustl.edu	37	3	113052263	113052263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000393845	-1	known	p.L350P	0.885	230	0%	190	23.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126733176	126733176	+	Silent	SNP	G	G	A	rs182679484	by1000genomes	TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_032242.3	+1	validated	p.A831	1.000	5	0.000	13	0.769	12	66.6%	-	-	-	HMMPfam_PSI,HMMSmart_SM00423
EPHB1	2047	genome.wustl.edu	37	3	134670510	134670510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_004441.4	+1	reviewed	p.A141S	1.000	214	0%	160	26.9%	0	-	benign(0.058)	deleterious(0.01)	neutral(0.409)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
PIK3CA	5290	genome.wustl.edu	37	3	178916728	178916728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006218.2	+1	reviewed	p.E39K	1.000	76	0%	60	30%	2	0%	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006218.2	+1	reviewed	p.G118D	1.000	200	0%	159	23.9%	3	0%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	superfamily_SSF54236
LOC100288554	100288554	genome.wustl.edu	37	4	9431335	9431335	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	XM_002342446.1	+1	model	p.T98	0.221	471	0%	361	19.9%	0	-	-	-	-	HMMPfam_Defensin_beta,superfamily_Defensin-like
SCARB2	950	genome.wustl.edu	37	4	77096968	77096968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_005506.2	-1	reviewed	p.Y267C	1.000	223	0%	178	24.2%	61	37.7%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_CD36
PCDHB2	56133	genome.wustl.edu	37	5	140476372	140476372	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_018936.2	+1	reviewed	p.D666	0.982	36	0%	30	26.7%	11	45.4%	-	-	-	HMMSmart_CA,superfamily_Cadherin
HIST1H4D	8360	genome.wustl.edu	37	6	26189262	26189262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_003539.3	-1	reviewed	p.G15C	1.000	55	0%	39	33.3%	0	-	unknown(0)	deleterious(0)	-	superfamily_Histone-fold,PatternScan_HISTONE_H4
HSP90AB1	3326	genome.wustl.edu	37	6	44217133	44217133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_007355.2	+1	provisional	p.Y56C	1.000	139	0%	145	30.3%	788	55.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SHPRH	257218	genome.wustl.edu	37	6	146276252	146276252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001042683.2	-1	validated	p.D69E	0.316	190	0%	126	19%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
CAMK2B	816	genome.wustl.edu	37	7	44281817	44281817	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000433930	-1	known	p.A30V	1.000	305	0%	274	23.7%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
PEX1	5189	genome.wustl.edu	37	7	92129128	92129128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_000466.2	-1	reviewed	p.P870S	1.000	199	0%	173	15.6%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MUC17	140453	genome.wustl.edu	37	7	100682802	100682802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001040105.1	+1	provisional	p.T2702M	0.001	353	0%	421	27.3%	0	-	probably_damaging(1)	-	-	NULL
LUC7L2	51631	genome.wustl.edu	37	7	139092031	139092031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_016019.2	+1	validated	p.D208N	1.000	146	0%	117	23.1%	29	20.6%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_LUC7
PCM1	5108	genome.wustl.edu	37	8	17863822	17863822	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006197.3	+1	validated	p.R1626	0.991	176	0%	107	25.2%	55	38.1%	-	-	-	NULL
SULF1	23213	genome.wustl.edu	37	8	70533457	70533457	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001128204.1	+1	validated	p.R522P	0.998	105	0%	61	19.7%	58	0%	possibly_damaging(0.91)	tolerated(0.08)	deleterious(0.662)	superfamily_Alkaline_phosphatase_core
RALYL	138046	genome.wustl.edu	37	8	85441621	85441621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001100391.1	+1	validated	p.R35H	0.999	184	0%	179	25.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TG	7038	genome.wustl.edu	37	8	133961173	133961173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_003235.4	+1	reviewed	p.Q1796K	1.000	293	0%	219	22.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136290691	136290691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_139025.3	+1	reviewed	p.R125W	1.000	47	0%	44	15.9%	0	-	benign(0.282)	deleterious(0.01)	deleterious(0.492)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
SARDH	1757	genome.wustl.edu	37	9	136584058	136584058	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001134707.1	-1	reviewed	e6+2	1.000	116	0%	104	25%	0	-	-	-	-	-
WDFY4	57705	genome.wustl.edu	37	10	50028406	50028406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_020945.1	+1	validated	p.T1878M	0.000	44	0%	45	17.8%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
HKDC1	80201	genome.wustl.edu	37	10	70998834	70998834	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_025130.3	+1	validated	p.R178	0.073	112	0%	95	22.1%	0	-	-	-	-	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain
GHITM	27069	genome.wustl.edu	37	10	85909925	85909925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_014394.2	+1	validated	p.A236V	0.997	290	0%	235	16.6%	353	42.2%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	HMMPfam_UPF0005
PTEN	5728	genome.wustl.edu	37	10	89624249	89624249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000371953	+1	known	p.I8fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89717715	89717716	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000371953	+1	known	p.P248fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
MUC5B	727897	genome.wustl.edu	37	11	1262585	1262585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_002458.1	+1	validated	p.T1495M	0.000	75	0%	86	30.2%	0	-	possibly_damaging(0.763)	-	-	NULL
KRTAP5-1	387264	genome.wustl.edu	37	11	1605790	1605790	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001005922.1	-1	validated	p.C230	0.472	217	0%	234	17.9%	2	50%	-	-	-	PatternScan_ZN2_CY6_FUNGAL_1
GLB1L3	112937	genome.wustl.edu	37	11	134147714	134147714	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001080407.2	+1	validated	p.F90	0.020	118	0%	107	38.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
KRT6B	3854	genome.wustl.edu	37	12	52841137	52841137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_005555.3	-1	reviewed	p.G511E	0.388	185	0%	168	24.4%	0	-	unknown(0)	tolerated(0.09)	-	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64456756	64456756	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_020762.2	+1	validated	p.A287	1.000	222	0%	188	29.8%	0	-	-	-	-	NULL
DDX54	79039	genome.wustl.edu	37	12	113617797	113617797	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001111322.1	-1	reviewed	p.P106	0.023	156	0%	152	29.6%	61	36%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM70B	348013	genome.wustl.edu	37	13	114469115	114469115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_182614.2	+1	provisional	p.S25L	0.994	90	0%	86	26.7%	1	0%	possibly_damaging(0.825)	deleterious(0)	deleterious(0.757)	NULL
IGHM	3507	genome.wustl.edu	37	14	106322172	106322172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000496208	-1	known	p.S50I	0.000	189	0%	163	38.7%	64	0%	benign(0.401)	tolerated(0.13)	neutral(0.382)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
HERC2	8924	genome.wustl.edu	37	15	28360632	28360632	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_004667.4	-1	reviewed	p.A4555	0.001	58	0%	72	29.2%	18	50%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
SIN3A	25942	genome.wustl.edu	37	15	75674045	75674045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001145357.1	-1	reviewed	p.L1066R	1.000	141	0%	133	52.6%	35	88.5%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
BAIAP3	8938	genome.wustl.edu	37	16	1392245	1392245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_003933.3	+1	reviewed	p.H341Q	1.000	65	0%	71	26.8%	0	-	benign(0.129)	tolerated(0.15)	neutral(0.252)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CTCF	10664	genome.wustl.edu	37	16	67644787	67644787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006565.2	+1	reviewed	p.G19fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SLC13A5	284111	genome.wustl.edu	37	17	6594246	6594246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_177550.3	-1	validated	p.S430F	1.000	132	0%	141	22.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_sulph_symp
CHD3	1107	genome.wustl.edu	37	17	7807889	7807889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001005271.2	+1	reviewed	p.R1401W	0.998	186	0%	199	24.1%	15	0%	probably_damaging(1)	-	-	HMMPfam_DUF1087
CNTROB	116840	genome.wustl.edu	37	17	7851000	7851000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	ENST00000380262	+1	known	p.P702L	0.180	76	0%	85	25.9%	26	34.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MED13	9969	genome.wustl.edu	37	17	60088386	60088386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_005121.2	-1	reviewed	p.V498L	1.000	406	0%	356	29.2%	30	43.3%	possibly_damaging(0.593)	tolerated(0.56)	neutral(0.211)	NULL
NEDD4L	23327	genome.wustl.edu	37	18	56050532	56050532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001144967.1	+1	validated	p.N803D	1.000	295	0%	308	24.4%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
EEF2	1938	genome.wustl.edu	37	19	3982300	3982300	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001961.3	-1	reviewed	p.G245	0.983	151	0%	164	24.4%	1953	48%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
TSHZ3	57616	genome.wustl.edu	37	19	31769277	31769277	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_020856.2	-1	validated	p.V474	0.005	160	0%	152	33.6%	4	0%	-	-	-	NULL
PTPRH	5794	genome.wustl.edu	37	19	55696971	55696971	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_002842.3	-1	validated	p.H987	0.724	95	0%	91	28.6%	4	75%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
COL6A2	1292	genome.wustl.edu	37	21	47539000	47539000	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001849.3	+1	reviewed	p.G412	0.021	39	0%	32	15.6%	60	0%	-	-	-	HMMPfam_Collagen
CNKSR2	22866	genome.wustl.edu	37	X	21458859	21458859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_014927.3	+1	reviewed	p.V160A	1.000	222	0%	169	21.9%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_CRIC_ras_sig
DCAF8L1	139425	genome.wustl.edu	37	X	27998032	27998032	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_001017930.1	-1	reviewed	p.Q474*	1.000	243	0%	193	23.3%	1	100%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
FAM47B	170062	genome.wustl.edu	37	X	34961511	34961511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_152631.2	+1	validated	p.C188Y	0.057	75	0%	69	18.8%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SMC1A	8243	genome.wustl.edu	37	X	53407567	53407567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_006306.2	-1	reviewed	p.E1198K	1.000	204	0%	166	31.9%	65	55.3%	benign(0.102)	deleterious(0)	neutral(0.453)	HMMPfam_SMC_N,superfamily_SSF52540
MED12	9968	genome.wustl.edu	37	X	70343021	70343021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_005120.2	+1	reviewed	p.R521H	1.000	426	0%	409	24.7%	12	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RLIM	51132	genome.wustl.edu	37	X	73815791	73815791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_016120.3	-1	reviewed	p.D8H	0.996	158	0%	113	20.4%	3	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109696151	109696151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_020769.2	+1	validated	p.T769K	0.064	222	0%	188	23.9%	0	-	possibly_damaging(0.663)	tolerated(0.54)	neutral(0.242)	NULL
LDOC1	23641	genome.wustl.edu	37	X	140271105	140271105	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11X-01A-11D-A10M-09	TCGA-B5-A11X-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca36a979-641b-4af7-b224-d47ef36e21ba	85cb816c-492f-48b5-8ce1-7b75ad797f7d	NM_012317.2	-1	reviewed	p.V34	0.999	28	0%	35	28.6%	120	0%	-	-	-	NULL
