Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27101135	27101135	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_006015.4	+1	reviewed	p.Q1473*	1.000	67	0%	65	24.6%	19	21%	-	-	-	NULL
BMP8B	656	genome.wustl.edu	37	1	40240606	40240606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001720.3	-1	reviewed	p.R147W	1.000	217	0%	197	12.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGFb_propeptide
SYCP1	6847	genome.wustl.edu	37	1	115430264	115430264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_003176.2	+1	validated	p.D403A	0.951	235	0%	251	25.1%	0	-	probably_damaging(0.978)	tolerated(0.41)	neutral(0.435)	HMMPfam_SCP-1
OTOF	9381	genome.wustl.edu	37	2	26697430	26697430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_194248.2	-1	reviewed	p.R1080H	1.000	62	0%	65	38.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DPYSL5	56896	genome.wustl.edu	37	2	27167662	27167662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_020134.3	+1	validated	p.D527N	1.000	45	0%	30	23.3%	0	-	probably_damaging(0.99)	tolerated(1)	neutral(0.442)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167297987	167297987	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_002976.2	-1	validated	p.T692	0.998	229	0%	201	30.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RQCD1	9125	genome.wustl.edu	37	2	219447735	219447735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_005444.1	+1	provisional	p.L82F	1.000	326	0%	313	30.7%	20	30%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Rcd1,superfamily_ARM repeat
DNAH12	201625	genome.wustl.edu	37	3	57445467	57445467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_178504.4	-1	validated	p.W905L	1.000	368	0%	323	27.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DHC_N2
COL6A5	256076	genome.wustl.edu	37	3	130095127	130095127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_153264.5	+1	validated	p.D39N	0.047	224	0%	207	40.6%	0	-	benign(0.011)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
SI	6476	genome.wustl.edu	37	3	164732949	164732949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001041.3	-1	reviewed	p.V1321F	1.000	427	0%	414	33.6%	0	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
MECOM	2122	genome.wustl.edu	37	3	169099103	169099103	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_004991.3	-1	validated	p.R83*	1.000	236	0%	328	12.5%	12	25%	-	-	-	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41015552	41015552	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_173489.4	-1	validated	p.Q971	0.100	419	0%	361	31%	0	-	-	-	-	superfamily_ARM repeat
PIK3R1	5295	genome.wustl.edu	37	5	67591109	67591109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_181523.1	+1	reviewed	p.P568T	1.000	341	0%	353	30%	76	56.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
THBS4	7060	genome.wustl.edu	37	5	79355702	79355702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_003248.4	+1	reviewed	p.G321R	1.000	109	0%	116	37.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF,superfamily_SSF57196
PCDHA4	56144	genome.wustl.edu	37	5	140187617	140187617	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_018907.2	+1	reviewed	p.S282*	0.026	130	0%	149	27.5%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
MAPK14	1432	genome.wustl.edu	37	6	36020504	36020521	+	In_Frame_Del	DEL	CGTGTGGCAGTGAAGAAG	CGTGTGGCAGTGAAGAAG	-	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	CGTGTGGCAGTGAAGAAG	CGTGTGGCAGTGAAGAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001315.2	+1	reviewed	p.RVAVKK49in_frame_del	1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:0.594:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ECT2L	345930	genome.wustl.edu	37	6	139135716	139135716	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001077706.1	+1	validated	p.L52*	0.047	362	0%	303	34.3%	0	-	-	-	-	NULL
SEMA3A	10371	genome.wustl.edu	37	7	83636679	83636679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_006080.2	-1	reviewed	p.R377P	1.000	248	0%	226	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
RINT1	60561	genome.wustl.edu	37	7	105195507	105195507	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_021930.4	+1	validated	p.K502Q	1.000	371	0%	357	35.3%	9	55.5%	benign(0.134)	tolerated(0.31)	neutral(0.038)	HMMPfam_RINT1_TIP1
MTAP	4507	genome.wustl.edu	37	9	21854833	21854833	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_002451.3	+1	reviewed	p.A218	1.000	108	0%	111	32.4%	14	28.5%	-	-	-	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
ANP32B	10541	genome.wustl.edu	37	9	100767376	100767376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_006401.2	+1	validated	p.Q153L	0.944	252	0%	295	35.9%	380	43.4%	benign(0.001)	deleterious(0.05)	neutral(0.345)	superfamily_Outer arm dynein light chain 1
SVEP1	79987	genome.wustl.edu	37	9	113139605	113139605	+	Missense_Mutation	SNP	G	G	A	rs189890058	by1000genomes	TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_153366.3	-1	validated	p.R3484C	0.990	105	0%	119	37.8%	11	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_022970.3	-1	reviewed	p.S252W	1.000	98	0%	91	71.4%	19	100%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
TM7SF2	7108	genome.wustl.edu	37	11	64881060	64881060	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_003273.2	+1	validated	p.I199	0.906	252	0%	204	31.9%	47	36.1%	-	-	-	HMMPfam_ERG4_ERG24
CHD4	1108	genome.wustl.edu	37	12	6697097	6697097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001273.2	-1	reviewed	p.R1162W	1.000	193	0%	149	32.9%	37	51.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
TPT1	7178	genome.wustl.edu	37	13	45914312	45914312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_003295.2	-1	provisional	p.S37I	1.000	303	0%	347	29.1%	8008	43%	benign(0.116)	tolerated(0.06)	neutral(0.332)	HMMPfam_TCTP,superfamily_Mss4-like
DET1	55070	genome.wustl.edu	37	15	89074177	89074177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_017996.3	-1	validated	p.R265W	1.000	59	0%	68	26.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Det1
IRX5	10265	genome.wustl.edu	37	16	54967646	54967646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_005853.5	+1	validated	p.H438R	1.000	18	0%	26	26.9%	3	33.3%	unknown(0)	deleterious(0.03)	-	NULL
HPR	3250	genome.wustl.edu	37	16	72109051	72109051	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_020995.3	+1	validated	p.Y67*	0.908	809	0%	841	23.3%	0	-	-	-	-	superfamily_Complement control module/SCR domain
ENSG00000214331	0	genome.wustl.edu	37	16	74394622	74394622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	ENST00000429810	-1	known	p.V46I	1.000	215	0%	208	19.7%	0	-	probably_damaging(0.986)	tolerated(0.05)	deleterious(0.780)	HMMPfam_DAO,superfamily_SSF51905
LLGL1	3996	genome.wustl.edu	37	17	18145018	18145018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_004140.3	+1	reviewed	p.R919H	0.996	32	0%	42	33.3%	23	34.7%	possibly_damaging(0.933)	deleterious(0.02)	deleterious(0.762)	NULL
ARSG	22901	genome.wustl.edu	37	17	66416355	66416355	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_014960.3	+1	validated	p.S443	0.004	250	0%	219	36.5%	15	60%	-	-	-	superfamily_Alkaline_phosphatase_core
KIF19	124602	genome.wustl.edu	37	17	72351378	72351378	+	Missense_Mutation	SNP	G	G	A	rs143319610	by1000genomes	TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_153209.3	+1	validated	p.R975Q	0.002	33	0%	31	29%	37	40.5%	possibly_damaging(0.781)	deleterious(0)	deleterious(0.737)	NULL
CSNK1D	1453	genome.wustl.edu	37	17	80210954	80210954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001893.3	-1	reviewed	p.R168H	1.000	307	0%	351	25.9%	56	30.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCDC102B	79839	genome.wustl.edu	37	18	66504173	66504173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001093729.1	+1	validated	p.C58Y	0.000	149	0%	144	31.9%	0	-	benign(0)	tolerated(1)	-	NULL
RDH8	50700	genome.wustl.edu	37	19	10131963	10131963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_015725.2	+1	validated	p.T190N	0.999	92	0%	84	31%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_NAD(P)-bd
ICOSLG	23308	genome.wustl.edu	37	21	45656979	45656979	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_015259.4	-1	validated	p.S59	0.000	226	0%	222	31.5%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PI4KA	5297	genome.wustl.edu	37	22	21082096	21082096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_058004.2	-1	reviewed	p.P1522R	1.000	122	1.6%	128	43%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
CRYBB2	1415	genome.wustl.edu	37	22	25623845	25623845	+	Missense_Mutation	SNP	T	T	A	rs113556772		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_000496.2	+1	reviewed	p.C67S	1.000	40	0%	49	46.9%	0	-	benign(0.02)	deleterious(0)	neutral(0.446)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
USP27X	389856	genome.wustl.edu	37	X	49646131	49646131	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001145073.1	+1	provisional	p.D407	0.991	134	0%	133	30.8%	11	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
RAB40AL	282808	genome.wustl.edu	37	X	102192541	102192541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001031834.1	+1	reviewed	p.R99C	1.000	291	0%	338	17.8%	1	0%	benign(0.068)	deleterious(0)	neutral(0.449)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
COL4A5	1287	genome.wustl.edu	37	X	107834398	107834398	+	Missense_Mutation	SNP	G	G	A	rs104886111		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_033380.1	+1	reviewed	p.G426R	1.000	144	0%	132	34.8%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
GRIA3	2892	genome.wustl.edu	37	X	122318450	122318450	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_000828.4	+1	reviewed	p.G21V	1.000	333	0%	257	31.9%	0	-	-	-	-	NULL
LOC100129236	100129236	genome.wustl.edu	37	X	150684443	150684443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	XM_001716550.1	+1	model	p.A85T	0.000	179	0%	91	17.6%	0	-	-	-	-	NULL
NSDHL	50814	genome.wustl.edu	37	X	152036177	152036177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VV-01A-21D-A122-09	TCGA-BG-A0VV-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3a84692-bd49-49fc-8bfd-a3adf9a7c317	ac9536ac-b761-40a2-9189-ec7095e1e4eb	NM_001129765.1	+1	reviewed	p.A250V	1.000	76	0%	87	20.7%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
