Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TEKT2	27285	genome.wustl.edu	37	1	36553096	36553096	+	Silent	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014466.2	+1	reviewed	p.L304	0.993	67	0%	41	61%	3	100%	-	-	-	HMMPfam_Tektin
COL9A2	1298	genome.wustl.edu	37	1	40766972	40766972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001852.3	-1	reviewed	p.R651Q	0.146	18	0%	21	28.6%	52	13.4%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_Collagen
DOCK7	85440	genome.wustl.edu	37	1	62962100	62962100	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_033407.2	-1	validated	p.F1580L	1.000	218	0%	270	31.5%	13	46.1%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75683549	75683549	+	Splice_Site	SNP	A	A	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_152697.4	-1	validated	e17+2	1.000	167	0%	235	14.9%	0	-	-	-	-	-
GCLM	2730	genome.wustl.edu	37	1	94354618	94354618	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_002061.2	-1	reviewed	p.S251	0.000	183	0.5%	202	11.4%	56	21.4%	-	-	-	superfamily_NAD(P)-linked oxidoreductase
LCE2B	26239	genome.wustl.edu	37	1	152659555	152659555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014357.4	+1	reviewed	p.R79H	0.000	130	0%	110	47.3%	0	-	unknown(0)	-	-	NULL
AXDND1	126859	genome.wustl.edu	37	1	179461992	179461992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_144696.4	+1	validated	p.C765F	1.000	290	0%	333	11.4%	0	-	unknown(0)	tolerated(0.06)	-	NULL
ASPM	259266	genome.wustl.edu	37	1	197115334	197115334	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_018136.4	-1	reviewed	p.K78	0.000	53	0%	60	11.7%	2	0%	-	-	-	NULL
H3F3A	3020	genome.wustl.edu	37	1	226253376	226253376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_002107.3	+1	reviewed	p.R50C	1.000	430	0%	509	11%	686	17.7%	probably_damaging(0.984)	-	-	HMMSmart_SM00428,superfamily_Histone-fold
TRIM67	440730	genome.wustl.edu	37	1	231335933	231335933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001004342.3	+1	validated	p.R435C	1.000	111	0%	183	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00502
OR2B11	127623	genome.wustl.edu	37	1	247615234	247615234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001004492.1	-1	provisional	p.I17M	0.999	330	0%	473	12.1%	0	-	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	superfamily_SSF81321
PSME4	23198	genome.wustl.edu	37	2	54114420	54114420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014614.2	-1	validated	p.Q1569K	1.000	620	0%	585	17.6%	66	27.2%	benign(0.001)	tolerated(1)	-	superfamily_ARM repeat
TTL	150465	genome.wustl.edu	37	2	113240044	113240044	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_153712.4	+1	validated	p.L41	1.000	24	0%	25	44%	7	42.8%	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168105569	168105569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_152381.4	+1	validated	p.E2556A	1.000	132	0%	127	12.6%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
VIL1	7429	genome.wustl.edu	37	2	219294067	219294067	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_007127.2	+1	reviewed	p.G209	0.024	42	0%	64	26.6%	0	-	-	-	-	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753
SCN5A	6331	genome.wustl.edu	37	3	38646358	38646358	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001099404.1	-1	reviewed	p.S460	0.999	310	0%	342	39.8%	0	-	-	-	-	NULL
CAMKV	79012	genome.wustl.edu	37	3	49898377	49898377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000480398	-1	known	p.P123L	1.000	143	0%	157	24.2%	0	-	unknown(0)	deleterious(0)	-	NULL
DNAH12	201625	genome.wustl.edu	37	3	57325992	57325992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000295941	-1	known	p.L2494V	0.889	698	0%	714	35.9%	0	-	probably_damaging(0.969)	tolerated(0.2)	neutral(0.460)	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141161969	141161969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001080412.2	+1	validated	p.N247D	0.000	89	0%	213	11.7%	8	37.5%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
FETUB	26998	genome.wustl.edu	37	3	186369007	186369007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014375.2	+1	reviewed	p.P233S	0.997	373	0%	696	13.1%	1	0%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
MFSD7	84179	genome.wustl.edu	37	4	678562	678562	+	Silent	SNP	G	G	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_032219.2	-1	provisional	p.P223	0.908	23	0%	22	22.7%	7	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
EVC2	132884	genome.wustl.edu	37	4	5699372	5699372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_147127.4	-1	reviewed	p.D77E	0.848	237	0.4%	389	11.6%	1	0%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
OCIAD1	54940	genome.wustl.edu	37	4	48851966	48851966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001079839.2	+1	validated	p.A82P	1.000	220	0%	124	33.1%	101	46.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_OCIA
LPHN3	23284	genome.wustl.edu	37	4	62936210	62936210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_015236.4	+1	reviewed	p.P1332T	1.000	120	0%	193	11.4%	2	50%	possibly_damaging(0.666)	deleterious(0.03)	deleterious(0.601)	HMMPfam_Latrophilin
SMR3A	26952	genome.wustl.edu	37	4	71227877	71227877	+	Frame_Shift_Del	DEL	G	G	-	rs62322478	byCluster;byFrequency;by1000genomes	TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_012390.3	+1	validated	p.C16fs	0.006	-	-	-	-	-	-	-	-	-	NULL
SOWAHB	345079	genome.wustl.edu	37	4	77818892	77818892	+	Silent	SNP	G	G	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001029870.1	-1	provisional	p.P37	0.441	13	0%	19	47.4%	5	60%	-	-	-	NULL
TLL1	7092	genome.wustl.edu	37	4	166913994	166913994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_012464.3	+1	reviewed	p.A107S	1.000	547	0.2%	557	24.8%	1	0%	benign(0.002)	tolerated(0.76)	neutral(0.001)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183268060	183268060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001080477.1	+1	provisional	p.E163D	0.601	227	0%	315	20.6%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Ten_N
HELT	391723	genome.wustl.edu	37	4	185941786	185941786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001029887.1	+1	provisional	p.P282S	0.996	12	0%	21	23.8%	0	-	probably_damaging(0.962)	tolerated(0.54)	neutral(0.413)	NULL
FAT1	2195	genome.wustl.edu	37	4	187541252	187541252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_005245.3	-1	reviewed	p.A2163D	0.927	133	0%	163	35%	0	-	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
OSMR	9180	genome.wustl.edu	37	5	38876369	38876369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_003999.2	+1	reviewed	p.S47I	0.000	342	0%	664	22.6%	32	28.1%	benign(0.125)	tolerated(0.06)	neutral(0.333)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591124	67591129	+	In_Frame_Del	DEL	CTGAGA	CTGAGA	-	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	CTGAGA	CTGAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_181523.1	+1	reviewed	p.LR573in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FAM151B	167555	genome.wustl.edu	37	5	79815573	79815573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_205548.1	+1	predicted	p.P127S	0.999	284	0%	313	59.4%	7	85.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2181
VCAN	1462	genome.wustl.edu	37	5	82815962	82815962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_004385.4	+1	reviewed	p.D613N	0.001	193	0%	160	16.3%	2	0%	possibly_damaging(0.703)	tolerated(0.06)	deleterious(0.575)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137722306	137722306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_016604.3	+1	validated	p.G459E	1.000	89	0%	95	48.4%	5	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DIAPH1	1729	genome.wustl.edu	37	5	140953568	140953568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_005219.4	-1	reviewed	p.P617S	0.199	57	0%	63	36.5%	12	75%	unknown(0)	deleterious(0)	-	HMMPfam_Drf_FH1
FOXF2	2295	genome.wustl.edu	37	6	1395086	1395086	+	Missense_Mutation	SNP	G	G	A	rs181428616	by1000genomes	TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001452.1	+1	reviewed	p.V443I	1.000	320	0.3%	286	16.8%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
MLIP	90523	genome.wustl.edu	37	6	53989384	53989384	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_138569.2	+1	validated	p.F111	0.002	154	0%	190	13.7%	1	0%	-	-	-	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109798047	109798047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014797.2	-1	validated	p.E347K	1.000	87	0%	116	30.2%	7	28.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_C2H2 and C2HC zinc fingers
LAMA2	3908	genome.wustl.edu	37	6	129748968	129748968	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_000426.3	+1	reviewed	p.N1979	0.998	320	0.3%	447	11.6%	0	-	-	-	-	superfamily_ConA_like_lec_gl
MEOX2	4223	genome.wustl.edu	37	7	15725798	15725800	+	In_Frame_Del	DEL	TGG	TGG	-	rs138506557	byCluster;by1000genomes	TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_005924.4	-1	reviewed	p.H80in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DFNA5	1687	genome.wustl.edu	37	7	24789339	24789339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001127453.1	-1	reviewed	p.L19M	0.452	241	0.8%	225	16%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gasdermin
GLI3	2737	genome.wustl.edu	37	7	42004043	42004043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_000168.5	-1	reviewed	p.A1543G	0.415	232	0%	311	11.9%	1	0%	probably_damaging(0.982)	tolerated(0.22)	neutral(0.468)	NULL
POM121L12	285877	genome.wustl.edu	37	7	53103605	53103605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_182595.3	+1	validated	p.R81W	0.000	7	0.000	15	0.333	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
PION	54103	genome.wustl.edu	37	7	76941497	76941497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_017439.3	-1	validated	p.R765I	0.000	252	0%	274	50.4%	6	66.6%	probably_damaging(0.964)	tolerated(0.25)	neutral(0.443)	NULL
GNB2	2783	genome.wustl.edu	37	7	100274423	100274424	+	Splice_Site	DEL	GT	GT	-	rs138290543	by1000genomes	TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_005273.3	+1	reviewed	e3+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
MUC17	140453	genome.wustl.edu	37	7	100681610	100681610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001040105.1	+1	provisional	p.D2305Y	0.013	346	0%	514	47.9%	0	-	unknown(0)	-	-	NULL
ARHGEF5	7984	genome.wustl.edu	37	7	144075925	144075925	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000474817	+1	known	p.P734L	0.013	205	0%	259	16.2%	26	26.9%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
ZNF786	136051	genome.wustl.edu	37	7	148768385	148768385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_152411.3	-1	validated	p.E493D	0.000	34	0%	39	53.8%	8	87.5%	benign(0.097)	tolerated(0.15)	neutral(0.248)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SSPO	23145	genome.wustl.edu	37	7	149488980	149488980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000378016	+1	known	p.R1774Q	0.923	27	0%	12	33.3%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NRG1	3084	genome.wustl.edu	37	8	32621448	32621448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_013956.3	+1	reviewed	p.P489Q	0.889	115	0%	124	49.2%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Neuregulin
ASH2L	9070	genome.wustl.edu	37	8	37996551	37996551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_004674.3	+1	validated	p.E617K	1.000	172	0%	367	44.4%	57	3.5%	benign(0.036)	tolerated(0.08)	neutral(0.302)	NULL
SLC20A2	6575	genome.wustl.edu	37	8	42294897	42294897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_006749.3	-1	provisional	p.R378Q	0.318	114	0.9%	84	13.1%	16	56.2%	possibly_damaging(0.859)	deleterious(0.02)	deleterious(0.715)	HMMPfam_PHO4
PRDM14	63978	genome.wustl.edu	37	8	70981465	70981465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_024504.2	-1	validated	p.P211T	0.002	76	0%	107	18.7%	0	-	benign(0.071)	deleterious(0.01)	neutral(0.411)	NULL
PAPPA	5069	genome.wustl.edu	37	9	119097222	119097222	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_002581.3	+1	reviewed	p.Q1160	1.000	50	0%	45	28.9%	0	-	-	-	-	superfamily_SSF55486
CACNB2	783	genome.wustl.edu	37	10	18807318	18807318	+	Silent	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_201596.2	+1	reviewed	p.L286	0.975	138	0%	222	26.1%	0	-	-	-	-	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD30A	91074	genome.wustl.edu	37	10	37421200	37421200	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_052997.2	+1	validated	p.T125	0.000	272	0%	341	11.1%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	T	rs121913292		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000371953	+1	known	p.R130L	1.000	353	0%	387	31.3%	39	71.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
OR51E2	81285	genome.wustl.edu	37	11	4703452	4703452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_030774.3	-1	validated	p.R164W	0.002	44	0%	48	18.8%	0	-	benign(0.265)	deleterious(0.01)	neutral(0.433)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNHD1	144132	genome.wustl.edu	37	11	6567732	6567732	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_144666.2	+1	provisional	p.L1855	0.913	37	0%	45	11.1%	1	0%	-	-	-	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34118080	34118080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_005898.4	+1	validated	p.H587R	1.000	146	0%	99	24.2%	151	51.6%	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	NULL
ELF5	2001	genome.wustl.edu	37	11	34515199	34515199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_198381.1	-1	reviewed	p.E71V	1.000	105	0%	125	27.2%	12	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
TTC17	55761	genome.wustl.edu	37	11	43400813	43400813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_018259.5	+1	validated	p.H64D	1.000	137	0%	115	37.4%	4	75%	probably_damaging(0.991)	tolerated(0.3)	deleterious(0.473)	NULL
OR8K1	390157	genome.wustl.edu	37	11	56114229	56114229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001002907.1	+1	provisional	p.G239W	0.400	273	0%	360	31.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC82	79780	genome.wustl.edu	37	11	96104265	96104265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_024725.3	-1	validated	p.L374P	1.000	261	0%	272	31.2%	5	40%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
FOXR1	283150	genome.wustl.edu	37	11	118851328	118851328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_181721.2	+1	reviewed	p.R247Q	0.978	61	0%	68	22.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
TECTA	7007	genome.wustl.edu	37	11	120989338	120989338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_005422.2	+1	reviewed	p.G372C	0.920	87	0%	101	23.8%	0	-	probably_damaging(0.978)	tolerated(0.05)	deleterious(0.766)	HMMPfam_VWD,HMMSmart_SM00216
CPNE8	144402	genome.wustl.edu	37	12	39064600	39064600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_153634.2	-1	reviewed	p.M479I	1.000	490	0%	463	11.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_VWA,superfamily_SSF53300
ZFC3H1	196441	genome.wustl.edu	37	12	72030803	72030803	+	Silent	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_144982.4	-1	validated	p.L588	0.997	394	0%	326	32.2%	1	100%	-	-	-	NULL
MYO1H	283446	genome.wustl.edu	37	12	109872858	109872858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001101421.3	+1	provisional	p.R688C	1.000	521	0%	379	20.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
VPS33A	65082	genome.wustl.edu	37	12	122726975	122726975	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_022916.4	-1	validated	p.S350	0.005	240	0%	253	20.6%	19	36.8%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
PSPC1	55269	genome.wustl.edu	37	13	20346552	20346552	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001042414.1	-1	validated	p.S168	1.000	175	0%	193	45.1%	41	82.9%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
BRCA2	675	genome.wustl.edu	37	13	32911020	32911020	+	Missense_Mutation	SNP	C	C	T	rs80358517		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_000059.3	+1	reviewed	p.A843V	0.000	147	0%	136	15.4%	0	-	benign(0.007)	tolerated(0.45)	neutral(0.012)	NULL
CDADC1	81602	genome.wustl.edu	37	13	49842027	49842027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_030911.2	+1	validated	p.D278N	1.000	177	0%	191	13.1%	3	33.3%	benign(0.023)	tolerated(0.3)	neutral(0.030)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84454931	84454931	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_052910.1	-1	reviewed	p.R238*	0.952	158	0%	114	43.9%	0	-	-	-	-	HMMSmart_LRRCT,superfamily_SSF52058
C14orf135	64430	genome.wustl.edu	37	14	60591771	60591771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_022495.5	+1	validated	p.I727T	1.000	336	0%	299	45.2%	2	100%	possibly_damaging(0.84)	deleterious(0)	deleterious(0.766)	NULL
DDX24	57062	genome.wustl.edu	37	14	94526677	94526677	+	Silent	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_020414.3	-1	reviewed	p.V560	0.996	383	0.3%	406	44.1%	58	82.7%	-	-	-	superfamily_SSF52540
MTMR10	54893	genome.wustl.edu	37	15	31251070	31251070	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_017762.2	-1	validated	p.Q311*	1.000	174	0%	159	23.3%	5	0%	-	-	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
TRIM69	140691	genome.wustl.edu	37	15	45051858	45051858	+	Silent	SNP	T	T	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_182985.3	+1	reviewed	p.H278	0.294	332	0%	353	34.3%	4	50%	-	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51792233	51792233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_015263.3	-1	validated	p.S1063T	1.000	305	0%	320	12.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMC7	79905	genome.wustl.edu	37	16	19034458	19034458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_024847.3	+1	validated	p.V218L	0.003	405	0%	397	48.1%	1	100%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
ENSG00000214581	0	genome.wustl.edu	37	16	34681749	34681749	+	Silent	SNP	A	A	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000398617	-1	known	p.P32	0.120	21	0%	21	28.6%	0	-	-	-	-	NULL
LONP2	83752	genome.wustl.edu	37	16	48330006	48330006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_031490.2	+1	provisional	p.I488M	0.939	410	0%	429	33.6%	44	47.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
ASGR2	433	genome.wustl.edu	37	17	7012178	7012178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001181.3	-1	reviewed	p.R52C	0.956	84	0%	58	48.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_N
TP53	7157	genome.wustl.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_000546.4	-1	reviewed	p.R282W	0.997	218	0%	207	54.1%	77	93.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_p53-like transcription factors,HMMPfam_P53
DHRS7C	201140	genome.wustl.edu	37	17	9674904	9674904	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001105571.1	-1	validated	p.P279	1.000	129	0%	105	21%	0	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
SUZ12	23512	genome.wustl.edu	37	17	30300205	30300205	+	Silent	SNP	T	T	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_015355.2	+1	reviewed	p.V182	1.000	304	0%	222	13.5%	11	27.2%	-	-	-	NULL
MYOM1	8736	genome.wustl.edu	37	18	3100422	3100422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_003803.3	-1	reviewed	p.T1193M	1.000	185	0%	224	14.7%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
DSC2	1824	genome.wustl.edu	37	18	28672233	28672233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_024422.3	-1	reviewed	p.N62S	0.029	195	0%	209	13.9%	9	33.3%	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin_pro,superfamily_Cadherin-like
PHLPP1	23239	genome.wustl.edu	37	18	60562320	60562320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_194449.2	+1	validated	p.T203A	1.000	155	0%	155	18.1%	2	100%	benign(0.355)	tolerated(0.18)	neutral(0.169)	HMMSmart_SM00364,superfamily_L domain-like
CDH7	1005	genome.wustl.edu	37	18	63511153	63511153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_004361.2	+1	reviewed	p.T363S	0.570	255	0.4%	249	17.3%	0	-	benign(0.006)	tolerated(0.17)	neutral(0.059)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
MKNK2	2872	genome.wustl.edu	37	19	2041047	2041047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_199054.2	-1	validated	p.V368I	1.000	63	0%	86	15.1%	924	30.9%	possibly_damaging(0.749)	tolerated(0.62)	neutral(0.279)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DNM2	1785	genome.wustl.edu	37	19	10906062	10906062	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001005360.1	+1	reviewed	p.E381	1.000	146	0%	167	16.8%	69	30.4%	-	-	-	HMMPfam_Dynamin_M
ENSG00000105520	0	genome.wustl.edu	37	19	11475235	11475235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	ENST00000427915	+1	known	p.R385C	0.539	34	0%	38	34.2%	20	40%	-	-	-	NULL
KCNN1	3780	genome.wustl.edu	37	19	18100534	18100534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_002248.3	+1	reviewed	p.A394T	0.998	285	0%	226	24.8%	1	100%	benign(0.057)	tolerated(0.16)	neutral(0.063)	HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,superfamily_Voltage-gated potassium channels
ZNF254	9534	genome.wustl.edu	37	19	24288743	24288743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_203282.2	+1	validated	p.G11E	0.671	435	0%	453	19.6%	2	50%	benign(0.085)	tolerated(0.17)	neutral(0.065)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LGI4	163175	genome.wustl.edu	37	19	35622891	35622891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_139284.2	-1	validated	p.R124C	0.953	259	0.4%	313	20.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,superfamily_L domain-like
KPTN	11133	genome.wustl.edu	37	19	47983624	47983624	+	Silent	SNP	G	G	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_007059.2	-1	validated	p.R214	0.883	34	0%	42	42.9%	20	85%	-	-	-	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51961440	51961440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014442.2	-1	validated	p.R68W	0.221	289	0%	258	29.5%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF841	284371	genome.wustl.edu	37	19	52569856	52569856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001136499.1	-1	validated	p.K427E	1.000	268	0%	294	14.3%	8	25%	possibly_damaging(0.713)	deleterious(0)	deleterious(0.702)	superfamily_SSF57667
DYNLRB1	83658	genome.wustl.edu	37	20	33128423	33128423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014183.2	+1	reviewed	p.E96K	0.996	332	0%	409	20.3%	367	30.2%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
COL6A1	1291	genome.wustl.edu	37	21	47404312	47404312	+	Silent	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_001848.2	+1	reviewed	p.A119	0.000	39	0%	24	25%	44	2.2%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
KCTD17	79734	genome.wustl.edu	37	22	37452374	37452374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_024681.2	+1	validated	p.A112T	1.000	126	0%	188	50%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
CBX6	23466	genome.wustl.edu	37	22	39262368	39262368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_014292.3	-1	validated	p.M362K	1.000	33	0%	50	42%	14	92.8%	benign(0.301)	tolerated(0.11)	neutral(0.365)	NULL
MTMR8	55613	genome.wustl.edu	37	X	63551614	63551614	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A139-01A-11D-A122-09	TCGA-BK-A139-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ed32c725-08ae-48eb-8fa2-719b9aeb7550	2ae69cba-be7f-46c3-b610-e27a48daef9d	NM_017677.3	-1	reviewed	p.S392C	0.992	136	0%	132	11.4%	7	42.8%	possibly_damaging(0.776)	deleterious(0.01)	deleterious(0.695)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
