Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CEP104	9731	genome.wustl.edu	37	1	3732040	3732040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014704.3	-1	validated	p.K902E	0.005	72	0%	65	56.9%	21	76.1%	possibly_damaging(0.811)	tolerated(0.14)	deleterious(0.555)	NULL
CEP104	9731	genome.wustl.edu	37	1	3740121	3740121	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000438539	-1	known	p.S87L	0.000	165	0%	161	31.7%	17	29.4%	-	-	-	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7527961	7527961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015215.1	+1	validated	p.Q170H	1.000	282	0%	205	45.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CG-1
CLCN6	1185	genome.wustl.edu	37	1	11879573	11879573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001286.2	+1	reviewed	p.R103L	0.971	431	0%	367	44.7%	0	-	possibly_damaging(0.828)	deleterious(0.02)	deleterious(0.697)	superfamily_Clc chloride channel
CTRC	11330	genome.wustl.edu	37	1	15764987	15764987	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_007272.2	+1	reviewed	p.A9	0.000	99	0%	88	25%	0	-	-	-	-	NULL
C1QB	713	genome.wustl.edu	37	1	22986097	22986097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000491.3	+1	reviewed	p.D50N	0.102	51	0%	40	45%	7	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
UBXN11	91544	genome.wustl.edu	37	1	26609226	26609226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_183008.2	-1	reviewed	p.K402N	1.000	98	0%	81	45.7%	111	41.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Ubiquitin-like
ARID1A	8289	genome.wustl.edu	37	1	27100120	27100120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006015.4	+1	reviewed	p.Q1306*	1.000	106	0%	105	44.8%	6	33.3%	-	-	-	NULL
CD164L2	388611	genome.wustl.edu	37	1	27706581	27706581	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_207397.2	-1	validated	p.L160	0.000	87	0%	81	43.2%	5	60%	-	-	-	HMMPfam_MGC-24
FAM76A	199870	genome.wustl.edu	37	1	28071169	28071169	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001143912.1	+1	validated	p.D154V	1.000	247	0%	217	31.8%	4	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NKAIN1	79570	genome.wustl.edu	37	1	31655387	31655387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024522.2	-1	validated	p.E130D	1.000	93	0%	103	42.7%	2	0%	benign(0.09)	tolerated(0.11)	neutral(0.278)	HMMPfam_NKAIN
HDAC1	3065	genome.wustl.edu	37	1	32797831	32797833	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004964.2	+1	reviewed	p.E455in_frame_del	1.000:1.000:0.967	-	-	-	-	-	-	-	-	-	NULL
HDAC1	3065	genome.wustl.edu	37	1	32798326	32798328	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004964.2	+1	reviewed	p.E468in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
THRAP3	9967	genome.wustl.edu	37	1	36752266	36752267	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005119.3	+1	validated	p.S146fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CSF3R	1441	genome.wustl.edu	37	1	36945074	36945074	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_156039.2	-1	reviewed	p.S8	0.139	90	0%	108	51.9%	0	-	-	-	-	NULL
GRIK3	2899	genome.wustl.edu	37	1	37270770	37270770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000831.3	-1	reviewed	p.M795V	1.000	40	0%	46	13%	0	-	benign(0.161)	deleterious(0)	neutral(0.459)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850,superfamily_SSF55620
NDUFS5	4725	genome.wustl.edu	37	1	39494495	39494495	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004552.2	+1	reviewed	p.C33	1.000	87	0%	122	21.3%	1263	15.5%	-	-	-	HMMPfam_Ndufs5
RLF	6018	genome.wustl.edu	37	1	40704268	40704268	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_012421.3	+1	validated	p.N1298K	0.968	57	0%	77	46.8%	1	0%	benign(0.33)	tolerated(0.59)	neutral(0.108)	NULL
LRRC41	10489	genome.wustl.edu	37	1	46744478	46744478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000254454	-1	known	p.W810R	1.000	19	0%	27	48.1%	131	50.3%	unknown(0)	deleterious(0)	-	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52811830	52811830	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004799.2	+1	reviewed	p.C1405	1.000	133	0%	120	41.7%	56	35.7%	-	-	-	NULL
CACHD1	57685	genome.wustl.edu	37	1	65124555	65124555	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020925.2	+1	validated	p.L599	0.994	61	0%	66	40.9%	1	0%	-	-	-	NULL
PTGER3	5733	genome.wustl.edu	37	1	71512793	71512793	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_198718.1	-1	reviewed	p.A156	0.985	15	0%	15	53.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
VAV3	10451	genome.wustl.edu	37	1	108292205	108292207	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006113.4	-1	reviewed	p.F423in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
UBAP2L	9898	genome.wustl.edu	37	1	154242853	154242853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000310038	+1	known	p.K372N	0.983	22	0%	15	53.3%	58	32.7%	unknown(0)	-	-	NULL
FCRL2	79368	genome.wustl.edu	37	1	157737276	157737276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_030764.3	-1	reviewed	p.T303A	0.192	72	0%	59	37.3%	0	-	possibly_damaging(0.886)	deleterious(0.03)	deleterious(0.711)	superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158061294	158061294	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018240.5	+1	validated	p.T473	0.570	85	0%	74	45.9%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
IGSF8	93185	genome.wustl.edu	37	1	160064677	160064677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_052868.2	-1	provisional	p.G142S	1.000	44	0%	38	47.4%	25	56%	benign(0.004)	tolerated(0.2)	neutral(0.049)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OLFML2B	25903	genome.wustl.edu	37	1	161953860	161953860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015441.1	-1	provisional	p.V620M	0.985	67	0%	70	40%	35	0%	possibly_damaging(0.879)	tolerated(0.24)	neutral(0.380)	HMMPfam_OLF,HMMSmart_SM00284
TDRD5	163589	genome.wustl.edu	37	1	179632591	179632591	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_173533.2	+1	provisional	p.Q818*	0.896	137	0%	182	49.5%	0	-	-	-	-	NULL
ENSG00000247866	0	genome.wustl.edu	37	1	180151476	180151476	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000500066	-1	known	NULL	0.000	90	0%	73	57.5%	0	-	-	-	-	-
ZNF648	127665	genome.wustl.edu	37	1	182026004	182026004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001009992.1	-1	provisional	p.R381H	0.627	84	0%	58	32.8%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CRB1	23418	genome.wustl.edu	37	1	197396613	197396613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_201253.1	+1	reviewed	p.D720Y	0.998	73	0%	83	37.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Concanavalin A-like lectins/glucanases
IPO9	55705	genome.wustl.edu	37	1	201824965	201824965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018085.4	+1	validated	p.A342V	1.000	142	0%	172	45.3%	3	0%	benign(0.009)	tolerated(0.21)	neutral(0.044)	superfamily_ARM repeat
URB2	9816	genome.wustl.edu	37	1	229773515	229773515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014777.2	+1	provisional	p.G1052D	0.012	48	0%	51	19.6%	0	-	possibly_damaging(0.614)	tolerated(0.08)	deleterious(0.513)	NULL
TRIM67	440730	genome.wustl.edu	37	1	231298873	231298873	+	Missense_Mutation	SNP	G	G	A	rs185070039	by1000genomes	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001004342.3	+1	validated	p.R53Q	0.857	21	0%	23	47.8%	0	-	benign(0.097)	tolerated(0.21)	neutral(0.051)	HMMSmart_SM00184,superfamily_RING/U-box
PCNXL2	80003	genome.wustl.edu	37	1	233372675	233372675	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014801.3	-1	provisional	p.P758	0.247	69	0%	75	33.3%	1	0%	-	-	-	NULL
ZP4	57829	genome.wustl.edu	37	1	238050750	238050750	+	Missense_Mutation	SNP	G	G	A	rs140243550	by1000genomes	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_021186.2	-1	reviewed	p.A222V	0.000	92	0%	98	16.3%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ZP4	57829	genome.wustl.edu	37	1	238053462	238053462	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_021186.2	-1	reviewed	p.L64	0.000	101	0%	122	44.3%	0	-	-	-	-	NULL
OR11L1	391189	genome.wustl.edu	37	1	248004303	248004303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001001959.1	-1	provisional	p.E299V	0.000	113	0%	116	37.1%	0	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	superfamily_SSF81321
PGBD2	267002	genome.wustl.edu	37	1	249210872	249210872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_170725.2	+1	validated	p.M30T	0.802	59	0%	69	14.5%	3	0%	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
C2orf48	348738	genome.wustl.edu	37	2	10350626	10350626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_182626.1	+1	predicted	p.A128V	0.000	40	0%	32	37.5%	0	-	unknown(0)	-	-	NULL
ABCG8	64241	genome.wustl.edu	37	2	44078856	44078856	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_022437.2	+1	reviewed	p.R152	1.000	65	0%	55	41.8%	0	-	-	-	-	HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF638	27332	genome.wustl.edu	37	2	71650072	71650072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001014972.1	+1	reviewed	p.Q1143R	0.434	90	0%	74	41.9%	17	23.5%	benign(0.03)	deleterious(0)	neutral(0.446)	NULL
POLR1A	25885	genome.wustl.edu	37	2	86297159	86297159	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015425.3	-1	validated	p.Q616	1.000	66	0%	68	50%	0	-	-	-	-	HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CNNM4	26504	genome.wustl.edu	37	2	97463291	97463291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020184.3	+1	reviewed	p.R530C	0.956	27	0%	33	54.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
INPP4A	3631	genome.wustl.edu	37	2	99181149	99181149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001134224.1	+1	reviewed	p.L697P	1.000	55	0%	45	48.9%	1	0%	possibly_damaging(0.76)	tolerated(0.11)	deleterious(0.552)	NULL
TBC1D8	11138	genome.wustl.edu	37	2	101650138	101650138	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001102426.1	-1	validated	p.T547	0.000	165	0%	190	39.5%	11	36.3%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
RGPD8	727851	genome.wustl.edu	37	2	113147501	113147501	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000302558	-1	known	p.Y1007	0.003	162	0%	194	37.1%	5	0%	-	-	-	NULL
MYO7B	4648	genome.wustl.edu	37	2	128354115	128354115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080527.1	+1	provisional	p.R775W	0.994	59	0%	52	48.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS6ST1	9394	genome.wustl.edu	37	2	129025925	129025925	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004807.2	-1	reviewed	p.D349	1.000	59	0%	50	40%	9	11.1%	-	-	-	HMMPfam_HS6ST
LOC440917	440917	genome.wustl.edu	37	2	139045516	139045516	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XR_041289.2	-1	model	NULL	0.459	171	0%	149	46.3%	0	-	-	-	-	-
BAZ2B	29994	genome.wustl.edu	37	2	160206535	160206535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_013450.2	-1	validated	p.T1516M	0.991	103	0%	103	35.9%	2	50%	probably_damaging(0.976)	tolerated(0.18)	deleterious(0.474)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168726420	168726420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020981.2	+1	reviewed	p.A291T	1.000	44	0%	41	46.3%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
TTN	7273	genome.wustl.edu	37	2	179591828	179591828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000356127	-1	known	p.V5511A	0.993	67	0%	73	37%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
SESTD1	91404	genome.wustl.edu	37	2	180008356	180008356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_178123.4	-1	validated	p.R271H	1.000	205	0%	207	43%	2	50%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
C2orf69	205327	genome.wustl.edu	37	2	200790024	200790024	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_153689.5	+1	validated	p.L191	1.000	118	0%	144	43.8%	0	-	-	-	-	HMMPfam_UPF0565
TMEM237	65062	genome.wustl.edu	37	2	202492869	202492869	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001044385.1	-1	validated	p.I291	0.969	101	0%	98	41.8%	15	53.3%	-	-	-	NULL
ALS2	57679	genome.wustl.edu	37	2	202625720	202625720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020919.3	-1	reviewed	p.A333T	0.001	222	0%	168	37.5%	6	50%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	NULL
RAPH1	65059	genome.wustl.edu	37	2	204326612	204326612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_213589.1	-1	validated	p.R257G	1.000	383	0.3%	358	42.2%	1	0%	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207454233	207454236	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	CAAA	CAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003812.2	+1	reviewed	p.K652fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
MDH1B	130752	genome.wustl.edu	37	2	207620066	207620066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001039845.1	-1	validated	p.R193C	0.203	87	0%	97	16.5%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_NAD(P)-binding Rossmann-fold domains
ERBB4	2066	genome.wustl.edu	37	2	212589909	212589909	+	Silent	SNP	C	C	T	rs142765774	by1000genomes	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000260943	-1	known	p.R211Q	0.035	48	0%	49	40.8%	0	-	-	-	-	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain
IKZF2	22807	genome.wustl.edu	37	2	214012391	214012392	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000442445	-1	known	p.P68fs	0.064:0.049	-	-	-	-	-	-	-	-	-	NULL
SH3BP5	9467	genome.wustl.edu	37	3	15311247	15311247	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004844.3	-1	validated	p.Q156	1.000	34	0%	36	36.1%	2	0%	-	-	-	HMMPfam_SH3BP5
ZNF385D	79750	genome.wustl.edu	37	3	21467058	21467058	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024697.2	-1	validated	p.T260S	1.000	311	0%	277	44.4%	0	-	benign(0.002)	tolerated(1)	-	NULL
XYLB	9942	genome.wustl.edu	37	3	38454445	38454445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005108.3	+1	reviewed	p.P518S	0.511	170	0%	131	42.7%	4	75%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_SSF53067
SCN11A	11280	genome.wustl.edu	37	3	38966905	38966905	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014139.2	-1	validated	e5+1	1.000	113	0%	102	36.3%	0	-	-	-	-	-
FYCO1	79443	genome.wustl.edu	37	3	46014692	46014692	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024513.2	-1	validated	p.Q143*	1.000	105	0%	126	37.3%	0	-	-	-	-	NULL
LTF	4057	genome.wustl.edu	37	3	46501249	46501249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002343.2	-1	reviewed	p.A35V	0.000	126	0%	169	47.3%	1	0%	benign(0.018)	tolerated(0.5)	neutral(0.011)	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
CELSR3	1951	genome.wustl.edu	37	3	48699203	48699203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001407.2	-1	reviewed	p.Q289K	0.150	8	0.000	6	0.667	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
LAMB2	3913	genome.wustl.edu	37	3	49167132	49167132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002292.3	-1	reviewed	p.R475W	0.624	94	0%	95	44.2%	4	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
MST1R	4486	genome.wustl.edu	37	3	49928838	49928838	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000434765	-1	known	p.L154H	0.991	63	0%	55	38.2%	37	40.5%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ABHD14A	25864	genome.wustl.edu	37	3	52012371	52012371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000458031	+1	known	p.P78L	0.965	92	0%	98	35.7%	104	51.9%	unknown(0)	deleterious(0)	-	NULL
GLYCTK	132158	genome.wustl.edu	37	3	52324719	52324719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_145262.3	+1	reviewed	p.E121K	1.000	23	0%	25	32%	9	33.3%	benign(0.089)	tolerated(0.48)	neutral(0.017)	superfamily_GckA/TtuD-like
DNAH1	25981	genome.wustl.edu	37	3	52422224	52422224	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015512.4	+1	validated	p.Y3015	0.956	67	0%	81	45.7%	0	-	-	-	-	NULL
PBRM1	55193	genome.wustl.edu	37	3	52610557	52610557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018165.4	-1	validated	p.G1199R	1.000	247	0.8%	259	22.4%	4	0%	possibly_damaging(0.787)	deleterious(0.04)	deleterious(0.643)	HMMPfam_BAH,HMMSmart_BAH
SLMAP	7871	genome.wustl.edu	37	3	57893693	57893693	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000416658	+1	known	p.A119T	1.000	112	0%	94	42.6%	5	60%	-	-	-	NULL
EPHA6	285220	genome.wustl.edu	37	3	96533482	96533482	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080448.2	+1	provisional	p.S5	0.999	16	0%	11	54.5%	0	-	-	-	-	NULL
MORC1	27136	genome.wustl.edu	37	3	108677946	108677946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014429.3	-1	reviewed	p.E941K	0.970	64	0%	71	35.2%	0	-	benign(0.14)	deleterious(0.01)	neutral(0.418)	NULL
MORC1	27136	genome.wustl.edu	37	3	108754191	108754191	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014429.3	-1	reviewed	p.Q485	0.706	221	0%	236	44.9%	0	-	-	-	-	HMMPfam_zf-CW
ARHGAP31	57514	genome.wustl.edu	37	3	119133695	119133695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020754.2	+1	reviewed	p.S973R	0.999	54	0%	64	46.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
MCM2	4171	genome.wustl.edu	37	3	127323763	127323763	+	Missense_Mutation	SNP	G	G	A	rs190889381	by1000genomes	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004526.2	+1	reviewed	p.R146H	1.000	30	0%	30	50%	7	42.8%	possibly_damaging(0.951)	tolerated(0.12)	deleterious(0.655)	NULL
U2SURP	23350	genome.wustl.edu	37	3	142751663	142751663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080415.1	+1	provisional	p.T550S	1.000	146	0.7%	132	35.6%	18	61.1%	benign(0.3)	tolerated(0.14)	neutral(0.343)	HMMSmart_SM00582,superfamily_ENTH/VHS domain
IGSF10	285313	genome.wustl.edu	37	3	151156014	151156014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_178822.4	-1	validated	p.A2112V	0.621	201	0%	177	31.1%	0	-	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PLCH1	23007	genome.wustl.edu	37	3	155206545	155206545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001130960.1	-1	validated	p.E803K	1.000	169	0%	135	37%	2	0%	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PRKCI	5584	genome.wustl.edu	37	3	170009668	170009668	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002740.5	+1	reviewed	p.T410	0.755	127	0%	130	34.6%	1	100%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TNIK	23043	genome.wustl.edu	37	3	170893065	170893065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015028.2	-1	validated	p.A250V	0.997	172	0%	164	43.9%	3	0%	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCDC39	339829	genome.wustl.edu	37	3	180381737	180381737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_181426.1	-1	validated	p.D43G	0.942	201	0%	180	33.9%	0	-	possibly_damaging(0.949)	tolerated(0.11)	deleterious(0.665)	NULL
LAMP3	27074	genome.wustl.edu	37	3	182871803	182871803	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014398.3	-1	validated	p.A142	0.000	569	0%	504	45.8%	1	0%	-	-	-	HMMPfam_Lamp
HTT	3064	genome.wustl.edu	37	4	3237960	3237960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002111.6	+1	reviewed	p.R2957Q	1.000	135	0%	115	40%	12	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SORCS2	57537	genome.wustl.edu	37	4	7716020	7716020	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000507866	+1	known	p.V648I	0.108	70	1.4%	59	44.1%	0	-	-	-	-	HMMSmart_SM00602
CC2D2A	57545	genome.wustl.edu	37	4	15539705	15539705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080522.2	+1	reviewed	p.L650V	0.225	65	0%	64	45.3%	1	100%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36168643	36168643	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015230.2	-1	reviewed	p.T628	0.217	151	0%	137	36.5%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ATP10D	57205	genome.wustl.edu	37	4	47548693	47548693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020453.3	+1	validated	p.I483M	0.077	107	0%	111	42.3%	0	-	benign(0.156)	tolerated(0.22)	neutral(0.056)	superfamily_HAD-like
COPS4	51138	genome.wustl.edu	37	4	83987629	83987631	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_016129.2	+1	reviewed	p.L310in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
HERC6	55008	genome.wustl.edu	37	4	89317268	89317268	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017912.3	+1	validated	p.G287	0.000	88	0%	103	45.6%	0	-	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
PRDM5	11107	genome.wustl.edu	37	4	121702385	121702385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018699.2	-1	reviewed	p.Q452H	1.000	164	0%	128	38.3%	0	-	probably_damaging(0.96)	tolerated(0.07)	deleterious(0.722)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FBXW7	55294	genome.wustl.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	A	rs149680468		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_033632.2	-1	reviewed	p.R505C	1.000	148	0%	125	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DCHS2	54798	genome.wustl.edu	37	4	155411073	155411073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001142552.1	-1	validated	p.A479T	0.004	38	0%	25	40%	0	-	benign(0.01)	tolerated(0.1)	neutral(0.287)	HMMSmart_SM00112,superfamily_Cadherin-like
FGA	2243	genome.wustl.edu	37	4	155507383	155507383	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000508.3	-1	reviewed	p.S400A	0.003	128	0%	123	44.7%	0	-	benign(0.24)	tolerated(0.72)	neutral(0.026)	HMMPfam_Fib_alpha
FAT1	2195	genome.wustl.edu	37	4	187527306	187527306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005245.3	-1	reviewed	p.T3423M	0.983	123	0%	115	45.2%	2	50%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
LRRC14B	389257	genome.wustl.edu	37	5	195288	195288	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080478.1	+1	provisional	p.A455	0.000	43	0%	53	15.1%	0	-	-	-	-	NULL
SLC6A19	340024	genome.wustl.edu	37	5	1212576	1212576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001003841.2	+1	reviewed	p.R214C	1.000	45	0%	34	32.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
LPCAT1	79888	genome.wustl.edu	37	5	1466973	1466973	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024830.3	-1	validated	p.G437	0.000	51	0%	52	36.5%	2	50%	-	-	-	superfamily_SSF47473
NSUN2	54888	genome.wustl.edu	37	5	6622140	6622140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017755.4	-1	validated	p.V204A	0.997	161	0%	117	47.9%	3	0%	possibly_damaging(0.906)	tolerated(0.75)	neutral(0.361)	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
DNAH5	1767	genome.wustl.edu	37	5	13708443	13708443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001369.2	-1	reviewed	p.V4376A	1.000	91	0%	132	57.6%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_Dynein_heavy
MTMR12	54545	genome.wustl.edu	37	5	32234009	32234009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001040446.1	-1	reviewed	p.P515H	1.000	166	0%	178	46.6%	4	50%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_(Phosphotyrosine protein) phosphatases II
NPR3	4883	genome.wustl.edu	37	5	32712493	32712493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000908.2	+1	validated	p.Y204C	1.000	20	0%	20	35%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
HTR1A	3350	genome.wustl.edu	37	5	63256593	63256593	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000524.2	-1	validated	p.P318	0.001	62	0%	50	12%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MCTP1	79772	genome.wustl.edu	37	5	94050481	94050483	+	Splice_Site	DEL	CTT	CTT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024717.4	-1	validated	e21-1	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
APC	324	genome.wustl.edu	37	5	112175273	112175273	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000038.4	+1	reviewed	p.Q1328*	0.986	48	0%	65	35.4%	0	-	-	-	-	NULL
CATSPER3	347732	genome.wustl.edu	37	5	134346121	134346121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_178019.2	+1	validated	p.S332N	0.131	181	0%	161	41.6%	4	50%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140230206	140230206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_031857.1	+1	reviewed	p.S709N	1.000	79	0%	53	32.1%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140236983	140236983	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018901.2	+1	reviewed	p.N450	0.906	91	0%	65	52.3%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB4	56131	genome.wustl.edu	37	5	140502844	140502844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018938.2	+1	reviewed	p.V422I	0.143	102	0%	90	51.1%	0	-	benign(0.321)	tolerated(0.09)	neutral(0.397)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGB1	56104	genome.wustl.edu	37	5	140730522	140730522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018922.2	+1	reviewed	p.A232V	0.997	62	0%	67	17.9%	0	-	possibly_damaging(0.748)	tolerated(0.21)	neutral(0.319)	HMMSmart_SM00112,PatternScan_CADHERIN_1
RBM27	54439	genome.wustl.edu	37	5	145610441	145610441	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018989.1	+1	validated	p.R271*	1.000	106	0%	110	48.2%	0	-	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169461501	169461501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004946.2	+1	validated	p.R1189Q	1.000	128	0%	104	40.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPL26L1	51121	genome.wustl.edu	37	5	172395540	172395540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_016093.2	+1	reviewed	p.E83K	1.000	103	0%	101	46.5%	79	43%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_KOW,superfamily_Translation proteins SH3-like domain
CPLX2	10814	genome.wustl.edu	37	5	175306032	175306032	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001008220.1	+1	reviewed	p.K51	1.000	37	0%	30	46.7%	0	-	-	-	-	HMMPfam_Synaphin
ZNF346	23567	genome.wustl.edu	37	5	176477893	176477893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_012279.2	+1	reviewed	p.A220V	1.000	99	0%	88	33%	3	33.3%	possibly_damaging(0.919)	tolerated(0.16)	neutral(0.429)	NULL
EXOC2	55770	genome.wustl.edu	37	6	637718	637718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018303.4	-1	reviewed	p.G34A	1.000	106	0%	97	26.8%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_TIG,superfamily_Ig_E-set
RREB1	6239	genome.wustl.edu	37	6	7231194	7231194	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001003699.3	+1	reviewed	p.S954	0.000	64	0%	53	56.6%	3	33.3%	-	-	-	NULL
PRSS16	10279	genome.wustl.edu	37	6	27222551	27222551	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005865.3	+1	reviewed	p.V410	1.000	81	0%	76	36.8%	1	0%	-	-	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
MSH5	4439	genome.wustl.edu	37	6	31711921	31711921	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_025259.5	+1	reviewed	p.P181	0.001	70	0%	100	19%	0	-	-	-	-	NULL
CUL7	9820	genome.wustl.edu	37	6	43014049	43014049	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014780.4	-1	reviewed	p.K862M	1.000	128	0%	124	39.5%	8	37.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_APC10,superfamily_Gal_bind_like
COL21A1	81578	genome.wustl.edu	37	6	55922493	55922493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_030820.3	-1	reviewed	p.A946T	0.964	118	0%	156	33.3%	1	100%	unknown(0)	tolerated(0.32)	-	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83863273	83863273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015018.2	+1	validated	p.K2058R	1.000	471	0%	448	42.4%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PM20D2	135293	genome.wustl.edu	37	6	89871857	89871857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001010853.1	+1	validated	p.R396W	1.000	72	0%	80	60%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_Zn-dependent exopeptidases
CCNC	892	genome.wustl.edu	37	6	99997424	99997424	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005190.3	-1	reviewed	p.T186	0.996	110	0%	102	37.3%	12	16.6%	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like
HBS1L	10767	genome.wustl.edu	37	6	135323934	135323934	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006620.3	-1	reviewed	p.V159	1.000	260	0%	228	38.6%	4	50%	-	-	-	HMMPfam_DUF1916
NHSL1	57224	genome.wustl.edu	37	6	138754487	138754487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001144060.1	-1	validated	p.A332V	0.828	92	0%	95	49.5%	2	100%	probably_damaging(0.99)	tolerated(0.31)	deleterious(0.469)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139186209	139186209	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001077706.1	+1	validated	p.T456	0.004	74	0%	69	37.7%	0	-	-	-	-	NULL
TULP4	56995	genome.wustl.edu	37	6	158924023	158924023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020245.3	+1	validated	p.P1110S	0.100	45	0%	36	58.3%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160448333	160448333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000876.2	+1	reviewed	p.V255M	0.023	42	0%	48	39.6%	2	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
PDE10A	10846	genome.wustl.edu	37	6	165806284	165806284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001130690.1	-1	validated	p.F503L	1.000	106	0%	88	38.6%	0	-	benign(0.148)	deleterious(0.03)	neutral(0.378)	superfamily_SSF109604
GPR146	115330	genome.wustl.edu	37	7	1097963	1097963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_138445.2	+1	provisional	p.L271P	0.000	77	0%	74	39.2%	8	37.5%	possibly_damaging(0.716)	tolerated(0.37)	neutral(0.278)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
INTS1	26173	genome.wustl.edu	37	7	1528998	1528998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080453.2	-1	validated	p.M767T	1.000	19	0%	27	33.3%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IQCE	23288	genome.wustl.edu	37	7	2629609	2629609	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_152558.3	+1	validated	p.C371	0.000	23	0%	19	47.4%	4	75%	-	-	-	NULL
CARD11	84433	genome.wustl.edu	37	7	2951847	2951847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032415.3	-1	validated	p.E1035K	1.000	132	0%	160	46.9%	2	0%	probably_damaging(0.983)	tolerated(0.68)	neutral(0.431)	superfamily_SSF52540
SDK1	221935	genome.wustl.edu	37	7	4247753	4247753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_152744.3	+1	validated	p.S1746N	0.139	47	0%	59	40.7%	0	-	benign(0.002)	tolerated(0.31)	neutral(0.027)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SCIN	85477	genome.wustl.edu	37	7	12684210	12684210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001112706.2	+1	validated	p.E587D	1.000	59	0%	75	30.7%	1	0%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
PDE1C	5137	genome.wustl.edu	37	7	31912929	31912929	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005020.1	-1	provisional	p.R195	0.999	104	0%	93	46.2%	0	-	-	-	-	superfamily_SSF109604
TRGV3	6976	genome.wustl.edu	37	7	38398576	38398576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000390346	-1	known	p.R2L	0.000	164	0%	161	9.9%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
URGCP	55665	genome.wustl.edu	37	7	43918300	43918300	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001077663.1	-1	validated	p.S254	0.507	48	0%	57	50.9%	11	18.1%	-	-	-	NULL
COBL	23242	genome.wustl.edu	37	7	51095567	51095567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015198.3	-1	validated	p.D1076Y	0.000	284	0%	294	43.2%	4	25%	possibly_damaging(0.822)	deleterious(0.01)	deleterious(0.717)	NULL
AUTS2	26053	genome.wustl.edu	37	7	70229775	70229775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015570.2	+1	validated	p.A418T	0.964	179	0%	139	48.2%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
POM121	9883	genome.wustl.edu	37	7	72398921	72398921	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_172020.1	+1	reviewed	e3-2	0.968	229	0%	224	38.4%	0	-	-	-	-	-
GTF2IRD1	9569	genome.wustl.edu	37	7	73950543	73950543	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_016328.1	+1	reviewed	p.P449	0.840	43	0%	52	38.5%	14	14.2%	-	-	-	NULL
CDK6	1021	genome.wustl.edu	37	7	92355008	92355008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001145306.1	-1	reviewed	p.G157*	1.000	159	0%	189	45%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TECPR1	25851	genome.wustl.edu	37	7	97870246	97870246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015395.1	-1	provisional	p.V284M	0.997	45	0%	58	41.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Hyd_WA,HMMSmart_SM00706
BAIAP2L1	55971	genome.wustl.edu	37	7	97939843	97939843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018842.4	-1	reviewed	p.G290D	0.995	209	0%	207	12.6%	25	0%	possibly_damaging(0.694)	tolerated(0.5)	neutral(0.259)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98609765	98609765	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000456197	+1	known	p.R3518H	0.588	58	0%	42	45.2%	31	41.9%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
AP4M1	9179	genome.wustl.edu	37	7	99699386	99699386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004722.3	+1	reviewed	p.Y17H	1.000	77	0%	69	33.3%	3	33.3%	benign(0.023)	tolerated(0.45)	neutral(0.013)	HMMPfam_Clat_adaptor_s,superfamily_Longin_like
MLL5	55904	genome.wustl.edu	37	7	104702673	104702674	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018682.3	+1	reviewed	p.T47fs	1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
FLNC	2318	genome.wustl.edu	37	7	128493067	128493067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001458.4	+1	reviewed	p.V2064M	1.000	18	0%	22	40.9%	1	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TRPV6	55503	genome.wustl.edu	37	7	142569570	142569570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018646.2	-1	validated	p.R690C	1.000	76	0%	77	28.6%	3	66.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ARHGEF5	7984	genome.wustl.edu	37	7	144069808	144069808	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000474817	+1	known	p.R590Q	0.309	126	0%	108	18.5%	5	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CHPF2	54480	genome.wustl.edu	37	7	150935527	150935527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_019015.1	+1	provisional	p.Q693H	1.000	44	0%	53	45.3%	53	58.4%	possibly_damaging(0.578)	deleterious(0.04)	deleterious(0.547)	HMMPfam_CHGN
ATP6V1B2	526	genome.wustl.edu	37	8	20068742	20068742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001693.3	+1	reviewed	p.G173D	1.000	164	0%	163	32.5%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEFL	4747	genome.wustl.edu	37	8	24813539	24813539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000221169	-1	known	p.R164H	1.000	10	0.000	8	0.750	0	-	-	-	-	HMMPfam_Filament
EBF2	64641	genome.wustl.edu	37	8	25715990	25715990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_022659.2	-1	validated	p.P458L	1.000	252	0%	223	42.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DPYSL2	1808	genome.wustl.edu	37	8	26500973	26500973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001386.4	+1	validated	p.E277G	1.000	171	0%	151	49%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
GPR124	25960	genome.wustl.edu	37	8	37688319	37688319	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032777.8	+1	validated	p.A270	1.000	34	0%	36	19.4%	3	0%	-	-	-	HMMSmart_SM00409
FAM110B	90362	genome.wustl.edu	37	8	59059805	59059805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_147189.2	+1	validated	p.P339L	1.000	74	0%	75	46.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MSC	9242	genome.wustl.edu	37	8	72755971	72755971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005098.3	-1	reviewed	p.T148M	1.000	26	0%	28	35.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
SLC10A5	347051	genome.wustl.edu	37	8	82606437	82606438	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001010893.2	-1	validated	p.S258fs	0.989:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SBF
VPS13B	157680	genome.wustl.edu	37	8	100587947	100587947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017890.3	+1	reviewed	p.R1696*	0.996	209	0%	206	39.3%	1	0%	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110499007	110499007	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_177531.4	+1	validated	p.R3279	0.179	222	0%	199	40.7%	0	-	-	-	-	superfamily_Pectin lyase-like
KHDRBS3	10656	genome.wustl.edu	37	8	136569701	136569701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006558.1	+1	provisional	p.D161G	1.000	116	0%	95	43.2%	10	70%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
PLEC	5339	genome.wustl.edu	37	8	144996469	144996469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_201380.2	-1	reviewed	p.R2644H	0.130	11	0%	11	54.5%	14	35.7%	benign(0.24)	-	-	NULL
PLEC	5339	genome.wustl.edu	37	8	144997105	144997105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_201380.2	-1	reviewed	p.L2468P	0.998	9	0.000	18	0.444	19	31.5%	probably_damaging(0.997)	-	-	NULL
NFX1	4799	genome.wustl.edu	37	9	33351597	33351597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002504.3	+1	reviewed	p.C822R	1.000	129	0%	120	44.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOL6	65083	genome.wustl.edu	37	9	33469335	33469335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_022917.4	-1	reviewed	p.K244N	1.000	107	0%	102	45.1%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nrap
RUSC2	9853	genome.wustl.edu	37	9	35555237	35555237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001135999.1	+1	validated	p.A732V	0.237	38	0%	23	34.8%	4	0%	benign(0.184)	tolerated(0.1)	neutral(0.303)	NULL
TMEM8B	51754	genome.wustl.edu	37	9	35846998	35846998	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_016446.3	+1	provisional	p.C275	0.146	109	0%	105	54.3%	18	11.1%	-	-	-	NULL
LOC646993	646993	genome.wustl.edu	37	9	36303798	36303798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XM_929965.4	-1	model	p.P108R	1.000	9	0.000	14	0.500	12	0%	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
LOC100288765	100288765	genome.wustl.edu	37	9	69846733	69846733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XM_002342925.1	+1	model	p.A276V	1.000	53	0%	41	19.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
FAM108B1	51104	genome.wustl.edu	37	9	74489617	74489617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_016014.2	-1	validated	p.Y127C	1.000	108	0%	131	48.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
GNA14	9630	genome.wustl.edu	37	9	80262685	80262685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004297.3	-1	reviewed	p.A9T	0.989	19	0%	16	56.2%	1	0%	benign(0.016)	tolerated(0.45)	neutral(0.013)	HMMPfam_G-alpha
SECISBP2	79048	genome.wustl.edu	37	9	91943768	91943770	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024077.3	+1	reviewed	p.E257in_frame_del	0.323:0.364:0.354	-	-	-	-	-	-	-	-	-	NULL
AUH	549	genome.wustl.edu	37	9	93978355	93978357	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001698.2	-1	reviewed	p.E309in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ClpP/crotonase
SLC44A1	23446	genome.wustl.edu	37	9	108136923	108136923	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_080546.3	+1	validated	p.T513	1.000	189	0%	182	19.2%	13	23%	-	-	-	HMMPfam_DUF580
KIF12	113220	genome.wustl.edu	37	9	116855768	116855770	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_138424.1	-1	provisional	p.L332in_frame_del	0.018:0.418:0.668	-	-	-	-	-	-	-	-	-	NULL
DBC1	1620	genome.wustl.edu	37	9	121929407	121929407	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014618.2	-1	validated	p.T747	0.010	246	0%	220	41.4%	1	0%	-	-	-	NULL
C5	727	genome.wustl.edu	37	9	123731363	123731363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001735.2	-1	reviewed	p.Y1399C	0.593	160	0%	174	32.8%	0	-	benign(0.261)	tolerated(0.18)	neutral(0.083)	superfamily_AM_receptor_bind
GLE1	2733	genome.wustl.edu	37	9	131295828	131295828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001003722.1	+1	reviewed	p.S450N	0.997	128	0%	133	42.1%	14	50%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_GLE1
DOLPP1	57171	genome.wustl.edu	37	9	131849037	131849037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020438.4	+1	validated	p.V214I	0.998	74	0%	86	40.7%	3	66.6%	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
C9orf50	375759	genome.wustl.edu	37	9	132377823	132377823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_199350.3	-1	validated	p.R274*	0.845	35	0%	34	38.2%	0	-	-	-	-	NULL
FNBP1	23048	genome.wustl.edu	37	9	132662287	132662287	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000449089	-1	known	p.P500L	0.804	130	0%	104	40.4%	6	16.6%	-	-	-	superfamily_SH3-domain
BRD3	8019	genome.wustl.edu	37	9	136901205	136901205	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_007371.3	-1	reviewed	p.L629	1.000	158	0%	149	35.6%	2	0%	-	-	-	NULL
SOHLH1	402381	genome.wustl.edu	37	9	138585554	138585554	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001101677.1	-1	validated	p.S351	0.953	28	0%	32	50%	0	-	-	-	-	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139395186	139395186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017617.3	-1	reviewed	p.A1918T	1.000	41	0%	31	45.2%	12	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PTGDS	5730	genome.wustl.edu	37	9	139872131	139872131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000954.5	+1	reviewed	p.F34Y	1.000	15	0%	18	50%	62	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_LIPOCALIN,superfamily_Lipocalins
OGDHL	55753	genome.wustl.edu	37	10	50954894	50954894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018245.2	-1	validated	p.A400T	1.000	74	0%	70	52.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_E1_dh,superfamily_SSF52518
PCDH15	65217	genome.wustl.edu	37	10	55996673	55996673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001142763.1	-1	reviewed	p.I304V	0.999	220	0%	218	41.3%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Cadherin,superfamily_Cadherin-like
RHOBTB1	9886	genome.wustl.edu	37	10	62670738	62670738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014836.4	-1	reviewed	p.R68H	1.000	102	0%	73	38.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_RHO,superfamily_SSF52540
ARID5B	84159	genome.wustl.edu	37	10	63851109	63851109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032199.2	+1	validated	p.K629N	1.000	48	0%	79	30.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SH2D4B	387694	genome.wustl.edu	37	10	82363341	82363341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_207372.2	+1	validated	p.R217Q	0.315	17	0%	12	66.7%	0	-	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	NULL
PTEN	5728	genome.wustl.edu	37	10	89653819	89653822	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AGAA	AGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000371953	+1	known	p.E40fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PDCD11	22984	genome.wustl.edu	37	10	105177641	105177641	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014976.1	+1	validated	p.E621	0.001	141	0%	142	43.7%	0	-	-	-	-	superfamily_Nucleic_acid_OB
TCF7L2	6934	genome.wustl.edu	37	10	114710595	114710597	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_030756.4	+1	reviewed	p.E29in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CTNNB1_binding
FAM24B	196792	genome.wustl.edu	37	10	124609947	124609947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_152644.2	-1	validated	p.A29T	0.000	278	0%	231	44.2%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
CPXM2	119587	genome.wustl.edu	37	10	125639745	125639745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_198148.2	-1	validated	p.R129C	0.180	152	0%	159	44%	0	-	possibly_damaging(0.56)	deleterious(0.01)	deleterious(0.597)	NULL
OAT	4942	genome.wustl.edu	37	10	126097526	126097526	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000274.3	-1	reviewed	p.L70	0.072	125	0%	123	40.7%	3	0%	-	-	-	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
DOCK1	1793	genome.wustl.edu	37	10	128821565	128821567	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000398025	+1	known	p.D456in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1267049	1267049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002458.1	+1	validated	p.T2983M	0.000	191	0%	144	15.3%	2	0%	unknown(0)	-	-	NULL
OR52N1	79473	genome.wustl.edu	37	11	5810041	5810041	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001001913.1	-1	provisional	p.S2	0.009	23	0%	23	52.2%	0	-	-	-	-	superfamily_SSF81321
APBB1	322	genome.wustl.edu	37	11	6424562	6424562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001164.2	-1	reviewed	p.A343T	1.000	75	0%	78	42.3%	1	0%	possibly_damaging(0.628)	tolerated(0.27)	neutral(0.253)	superfamily_PH domain-like
DNHD1	144132	genome.wustl.edu	37	11	6554961	6554961	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_144666.2	+1	provisional	p.Y852	0.418	64	0%	69	58%	0	-	-	-	-	NULL
LDHAL6A	160287	genome.wustl.edu	37	11	18487289	18487293	+	Frame_Shift_Del	DEL	TTAAA	TTAAA	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	TTAAA	TTAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001144071.1	+1	validated	p.K118fs	1.000:1.000:1.000:0.998:0.620	-	-	-	-	-	-	-	-	-	HMMPfam_Ldh_1_N,superfamily_NAD(P)-bd
PTPN5	84867	genome.wustl.edu	37	11	18762246	18762246	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006906.1	-1	validated	p.S273	0.002	40	0%	29	37.9%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
EHF	26298	genome.wustl.edu	37	11	34680226	34680228	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_012153.4	+1	validated	p.K253in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
GYLTL1B	120071	genome.wustl.edu	37	11	45949753	45949753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_152312.3	+1	validated	p.A594T	0.991	39	0%	47	42.6%	135	53.3%	possibly_damaging(0.525)	tolerated(0.12)	neutral(0.438)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46564856	46564856	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017749.2	-1	validated	p.T237	0.153	82	0%	70	52.9%	3	100%	-	-	-	NULL
LRP4	4038	genome.wustl.edu	37	11	46884207	46884207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002334.3	-1	reviewed	p.E1779K	1.000	554	0%	546	22.3%	32	18.7%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
MADD	8567	genome.wustl.edu	37	11	47296642	47296642	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003682.3	+1	reviewed	p.K197	0.999	105	0%	99	30.3%	0	-	-	-	-	HMMPfam_DENN,HMMSmart_SM00799
OR4C15	81309	genome.wustl.edu	37	11	55322600	55322600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001001920.1	+1	provisional	p.V273A	0.023	232	0%	238	23.1%	0	-	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10Q1	219960	genome.wustl.edu	37	11	57995783	57995783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001004471.2	-1	validated	p.V189I	0.480	67	0%	72	11.1%	0	-	benign(0.03)	tolerated(0.16)	neutral(0.061)	HMMPfam_7tm_1,superfamily_SSF81321
FEN1	2237	genome.wustl.edu	37	11	61563826	61563826	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004111.4	+1	reviewed	p.S331	1.000	56	0%	51	15.7%	30	16.6%	-	-	-	superfamily_5' to 3' exonuclease C-terminal subdomain
GANAB	23193	genome.wustl.edu	37	11	62396437	62396437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_198335.2	-1	validated	p.R684C	1.000	39	0%	61	31.1%	52	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_2
UBXN1	51035	genome.wustl.edu	37	11	62445882	62445882	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015853.3	-1	provisional	e4-2	0.881	128	0%	139	48.9%	6	100%	-	-	-	-
C11orf95	65998	genome.wustl.edu	37	11	63533451	63533451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001144936.1	-1	predicted	p.W155C	1.000	150	0%	123	43.9%	0	-	-	-	-	NULL
ESRRA	2101	genome.wustl.edu	37	11	64074698	64074698	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004451.3	+1	reviewed	p.E16A	0.997	59	0%	43	30.2%	5	40%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
FOSL1	8061	genome.wustl.edu	37	11	65660428	65660428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005438.3	-1	reviewed	p.R249C	1.000	48	0%	67	47.8%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTTN	2017	genome.wustl.edu	37	11	70279799	70279799	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005231.3	+1	reviewed	p.A497	1.000	135	0%	123	48%	88	42%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
LOC220077	220077	genome.wustl.edu	37	11	71961323	71961323	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XR_017002.2	-1	model	NULL	0.980	36	0%	29	41.4%	0	-	-	-	-	-
PGM2L1	283209	genome.wustl.edu	37	11	74056576	74056576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_173582.3	-1	validated	p.A386T	1.000	205	0%	193	46.6%	1	100%	benign(0.011)	tolerated(0.07)	neutral(0.320)	superfamily_Phosphoglucomutase first 3 domains
MAML2	84441	genome.wustl.edu	37	11	95712363	95712363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032427.1	-1	validated	p.T1074A	0.998	294	0%	247	38.5%	2	0%	possibly_damaging(0.752)	tolerated(0.2)	neutral(0.325)	NULL
LAYN	143903	genome.wustl.edu	37	11	111414869	111414869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_178834.3	+1	provisional	p.R103C	0.147	117	0%	115	45.2%	5	0%	possibly_damaging(0.732)	tolerated(0.2)	neutral(0.317)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
NCAM1	4684	genome.wustl.edu	37	11	113085220	113085220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000401611	+1	known	p.S231N	1.000	85	0%	67	50.7%	0	-	possibly_damaging(0.912)	tolerated(0.07)	deleterious(0.682)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
PHLDB1	23187	genome.wustl.edu	37	11	118514585	118514585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001144758.1	+1	validated	p.P982L	1.000	42	0%	50	54%	5	0%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	NULL
TECTA	7007	genome.wustl.edu	37	11	121028919	121028919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005422.2	+1	reviewed	p.R1559W	1.000	44	2.3%	40	52.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_VWD,HMMSmart_SM00216
OR8G2	26492	genome.wustl.edu	37	11	124095512	124095512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001007249.1	+1	provisional	p.R39C	0.924	155	0%	152	42.8%	0	-	-	-	-	superfamily_SSF81321
ARHGAP32	9743	genome.wustl.edu	37	11	128848792	128848792	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001142685.1	-1	validated	p.K651	0.997	106	0%	102	44.1%	0	-	-	-	-	NULL
EFCAB4B	84766	genome.wustl.edu	37	12	3768785	3768785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001144958.1	-1	validated	p.L236R	0.988	208	0%	146	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP3	10566	genome.wustl.edu	37	12	4736891	4736891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006422.2	-1	reviewed	p.H393Y	0.003	166	0%	172	47.7%	0	-	benign(0.011)	deleterious(0.05)	neutral(0.346)	HMMPfam_AKAP_110,HMMSmart_SM00807
GRIN2B	2904	genome.wustl.edu	37	12	13716592	13716592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000834.3	-1	reviewed	p.P1194S	1.000	80	0%	84	54.8%	0	-	benign(0.013)	tolerated(0.42)	neutral(0.015)	HMMPfam_NMDAR2_C
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_033360.2	-1	reviewed	p.G12D	1.000	173	0%	200	46.5%	1	0%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCNT1	904	genome.wustl.edu	37	12	49091968	49091969	+	Splice_Site	INS	-	-	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001240.2	-1	reviewed	e6-2	1.000:0.991	-	-	-	-	-	-	-	-	-	-
RACGAP1	29127	genome.wustl.edu	37	12	50400226	50400226	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001126103.1	-1	validated	p.C93	0.871	93	0%	113	46.9%	4	25%	-	-	-	NULL
CALCOCO1	57658	genome.wustl.edu	37	12	54108446	54108446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020898.2	-1	validated	p.T473I	0.998	101	0%	105	41%	12	58.3%	possibly_damaging(0.923)	tolerated(0.09)	deleterious(0.669)	HMMPfam_CALCOCO1
OR10P1	121130	genome.wustl.edu	37	12	56031382	56031382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_206899.1	+1	provisional	p.R236H	0.000	96	0%	79	35.4%	0	-	benign(0.002)	tolerated(0.58)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
MARS	4141	genome.wustl.edu	37	12	57908506	57908506	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004990.2	+1	reviewed	p.A657	1.000	161	0%	138	47.8%	49	48.9%	-	-	-	superfamily_tRNAsyn_1a_bind,HMMPfam_tRNA-synt_1g
TRHDE	29953	genome.wustl.edu	37	12	72666729	72666729	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_013381.2	+1	reviewed	p.L57	0.915	8	0.000	12	0.417	0	-	-	-	-	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94694693	94694693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005761.1	+1	provisional	p.L1416F	1.000	102	0%	102	29.4%	0	-	unknown(0)	tolerated(0.12)	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
UTP20	27340	genome.wustl.edu	37	12	101750807	101750807	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014503.2	+1	validated	p.F1880fs	0.999	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
STAB2	55576	genome.wustl.edu	37	12	104089546	104089546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017564.9	+1	reviewed	p.A1169V	0.996	147	0%	161	47.2%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Fasciclin,superfamily_BIgH3_FAS1
SSH1	54434	genome.wustl.edu	37	12	109182626	109182626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018984.3	-1	validated	p.D763G	0.914	165	0%	191	48.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYO1H	283446	genome.wustl.edu	37	12	109865337	109865337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001101421.3	+1	provisional	p.R626Q	1.000	120	0%	109	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
USPL1	10208	genome.wustl.edu	37	13	31232199	31232199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005800.4	+1	validated	p.N662S	0.000	89	0%	101	40.6%	14	28.5%	benign(0.01)	tolerated(0.69)	neutral(0.003)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31722601	31722601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006644.2	-1	validated	p.P385L	1.000	61	0%	76	23.7%	21	4.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70
FRY	10129	genome.wustl.edu	37	13	32783015	32783015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000261575	+1	known	p.T153A	0.250	46	0%	34	38.2%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
BRCA2	675	genome.wustl.edu	37	13	32950837	32950837	+	Missense_Mutation	SNP	G	G	A	rs80359124	byCluster	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000059.3	+1	reviewed	p.R2888H	0.023	90	0%	91	51.6%	1	0%	possibly_damaging(0.855)	tolerated(0.21)	neutral(0.374)	superfamily_Nucleic_acid_OB,superfamily_SSF81878
FREM2	341640	genome.wustl.edu	37	13	39262950	39262950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_207361.4	+1	reviewed	p.G490D	1.000	37	0%	63	55.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46542056	46542056	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015070.3	-1	validated	p.R1302*	0.952	267	0%	279	40.9%	5	60%	-	-	-	NULL
HTR2A	3356	genome.wustl.edu	37	13	47469759	47469759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000621.3	-1	reviewed	p.V95I	1.000	134	0.7%	113	36.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC647262	647262	genome.wustl.edu	37	13	64321145	64321145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XM_934622.3	+1	model	p.G71V	0.842	190	0%	124	46.8%	0	-	unknown(0)	deleterious(0.01)	-	NULL
SPRY2	10253	genome.wustl.edu	37	13	80911671	80911671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005842.2	-1	reviewed	p.E57G	1.000	79	0%	99	45.5%	29	55.1%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
MCF2L	23263	genome.wustl.edu	37	13	113714940	113714940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001112732.1	+1	validated	p.V192M	0.997	68	0%	65	41.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516
SALL2	6297	genome.wustl.edu	37	14	21992767	21992767	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005407.1	-1	validated	p.P365	1.000	96	0%	82	40.2%	0	-	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24880325	24880325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_025081.2	+1	validated	p.A820T	1.000	96	0%	114	47.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
EGLN3	112399	genome.wustl.edu	37	14	34398328	34398328	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_022073.3	-1	validated	p.S190T	1.000	112	0%	91	36.3%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc
ZFYVE26	23503	genome.wustl.edu	37	14	68236463	68236465	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000394455	-1	known	p.P14in_frame_del	0.000:0.004:0.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00064
FBLN5	10516	genome.wustl.edu	37	14	92347738	92347738	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006329.3	-1	reviewed	p.N296fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
UNC79	57578	genome.wustl.edu	37	14	94173186	94173186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020818.3	+1	validated	p.Q2438R	1.000	153	0%	118	47.5%	0	-	benign(0.37)	tolerated(0.19)	neutral(0.167)	NULL
WARS	7453	genome.wustl.edu	37	14	100820803	100820803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004184.3	-1	reviewed	p.I175V	1.000	91	0%	93	32.3%	19	26.3%	benign(0.001)	tolerated(0.45)	neutral(0.012)	superfamily_Nucleotidylyl transferase
TECPR2	9895	genome.wustl.edu	37	14	102894613	102894613	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014844.3	+1	validated	p.S326	0.018	98	1%	72	36.1%	0	-	-	-	-	HMMSmart_TECPR,superfamily_WD40_like
MKRN3	7681	genome.wustl.edu	37	15	23811819	23811819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005664.3	+1	reviewed	p.M297T	1.000	133	0%	118	42.4%	2	50%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
UBE3A	7337	genome.wustl.edu	37	15	25620631	25620631	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000462.2	-1	reviewed	p.G117	0.003	67	0%	79	45.6%	3	66.6%	-	-	-	NULL
OCA2	4948	genome.wustl.edu	37	15	28096602	28096602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000275.2	-1	reviewed	p.L755R	1.000	41	0%	27	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CitMHS
STARD9	57519	genome.wustl.edu	37	15	43010963	43010963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XM_001129482.3	+1	model	p.V4533G	0.862	97	0%	86	44.2%	0	-	possibly_damaging(0.733)	-	-	superfamily_Bet v1-like
TRPM7	54822	genome.wustl.edu	37	15	50906374	50906374	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017672.4	-1	reviewed	p.T527	0.998	129	0%	137	35.8%	1	0%	-	-	-	NULL
THSD4	79875	genome.wustl.edu	37	15	72040793	72040793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024817.2	+1	provisional	p.R759C	1.000	240	0%	213	40.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NPTN	27020	genome.wustl.edu	37	15	73889513	73889513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_012428.3	-1	reviewed	p.G97S	1.000	94	0%	96	42.7%	0	-	possibly_damaging(0.807)	tolerated(0.17)	neutral(0.363)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
WDR61	80349	genome.wustl.edu	37	15	78578445	78578445	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_025234.1	-1	provisional	p.S229	1.000	39	0%	35	37.1%	56	42.8%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TMC3	342125	genome.wustl.edu	37	15	81648870	81648870	+	Missense_Mutation	SNP	C	C	T	rs146506274	by1000genomes	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080532.1	-1	provisional	p.R270Q	1.000	71	0%	82	34.1%	0	-	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
WHAMM	123720	genome.wustl.edu	37	15	83499654	83499656	+	In_Frame_Del	DEL	CCG	CCG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	CCG	CCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080435.1	+1	provisional	p.P652in_frame_del	0.038:0.029:0.000	-	-	-	-	-	-	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85360217	85360217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020778.4	+1	validated	p.A47V	0.000	50	0%	61	39.3%	0	-	unknown(0)	-	-	NULL
ACAN	176	genome.wustl.edu	37	15	89401997	89401998	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_013227.3	+1	reviewed	p.P1949fs	0.975:0.966	-	-	-	-	-	-	-	-	-	NULL
FURIN	5045	genome.wustl.edu	37	15	91424572	91424572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002569.2	+1	reviewed	p.G617W	0.998	15	0%	30	36.7%	28	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_FU,superfamily_Grow_fac_recept
TTC23	64927	genome.wustl.edu	37	15	99740199	99740199	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001040655.1	-1	validated	p.V228	0.002	280	0%	256	10.5%	2	0%	-	-	-	superfamily_TPR-like
AXIN1	8312	genome.wustl.edu	37	16	343588	343588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003502.2	-1	reviewed	p.P696T	1.000	60	0%	68	52.9%	39	41%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPUSD1	113000	genome.wustl.edu	37	16	837435	837435	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_058192.2	-1	validated	p.C75	0.991	18	0%	30	46.7%	16	43.7%	-	-	-	HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom
CRAMP1L	57585	genome.wustl.edu	37	16	1716120	1716120	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020825.3	+1	validated	p.A933	1.000	84	1.2%	85	55.3%	0	-	-	-	-	NULL
C16orf79	283870	genome.wustl.edu	37	16	2259563	2259563	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_182563.2	-1	provisional	p.R195*	0.000	36	0%	32	50%	21	38%	-	-	-	NULL
NOMO2	283820	genome.wustl.edu	37	16	18554975	18554975	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001004060.1	-1	reviewed	p.V233	1.000	325	0%	314	42.4%	0	-	-	-	-	superfamily_Carboxypeptidase regulatory domain
IGSF6	10261	genome.wustl.edu	37	16	21652899	21652901	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005849.2	-1	validated	p.N227in_frame_del	0.185:0.128:0.015	-	-	-	-	-	-	-	-	-	NULL
XPO6	23214	genome.wustl.edu	37	16	28181140	28181140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015171.2	-1	provisional	p.V166M	1.000	90	0%	84	45.2%	1	0%	possibly_damaging(0.793)	tolerated(0.28)	neutral(0.330)	HMMPfam_Xpo1,superfamily_ARM repeat
RRN3P2	653390	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000427965	+1	known	p.W375R	0.991	67	3%	117	30.8%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_RRN3
SLC5A2	6524	genome.wustl.edu	37	16	31499706	31499706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003041.3	+1	reviewed	p.E342K	0.953	29	0%	17	41.2%	1	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_SSF
ABCC12	94160	genome.wustl.edu	37	16	48149471	48149471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_033226.2	-1	reviewed	p.R615H	0.987	83	0%	78	52.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDH1	999	genome.wustl.edu	37	16	68867224	68867224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004360.3	+1	reviewed	p.A824V	1.000	133	0%	106	36.8%	38	36.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin_C
JPH3	57338	genome.wustl.edu	37	16	87724010	87724010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020655.2	+1	reviewed	p.R682W	0.998	16	0.000	9	0.444	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88496482	88496482	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001127464.1	+1	reviewed	p.F868	0.014	14	0.000	9	0.444	0	-	-	-	-	NULL
OR1A2	26189	genome.wustl.edu	37	17	3101013	3101013	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_012352.1	+1	provisional	p.S67	0.049	261	0%	258	46.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
C17orf85	55421	genome.wustl.edu	37	17	3717712	3717712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001114118.1	-1	provisional	p.V511I	0.260	171	0%	170	38.8%	13	23%	benign(0.007)	tolerated(0.67)	neutral(0.003)	NULL
SPNS3	201305	genome.wustl.edu	37	17	4350207	4350207	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_182538.4	+1	validated	p.L191	0.965	80	0%	97	43.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZBTB4	57659	genome.wustl.edu	37	17	7365612	7365612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001128833.1	-1	validated	p.G897W	0.990	17	0%	35	31.4%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FXR2	9513	genome.wustl.edu	37	17	7496752	7496752	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004860.3	-1	reviewed	p.G433	1.000	78	0%	91	50.5%	12	75%	-	-	-	NULL
LOC100287561	100287561	genome.wustl.edu	37	17	7983322	7983322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XM_002343488.1	+1	model	p.G98R	0.000	17	0%	13	30.8%	0	-	unknown(0)	-	-	NULL
ELAC2	60528	genome.wustl.edu	37	17	12896200	12896200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018127.6	-1	reviewed	p.G806R	0.000	62	0%	52	51.9%	118	50.8%	benign(0.001)	tolerated(0.83)	neutral(0.001)	NULL
LOC100287710	100287710	genome.wustl.edu	37	17	13399760	13399760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	XM_002343489.1	+1	model	p.A48T	1.000	125	0%	114	25.4%	1	0%	-	-	-	NULL
ENSG00000205325	0	genome.wustl.edu	37	17	14683332	14683332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000379640	-1	known	p.S52L	0.000	111	0%	113	44.2%	0	-	unknown(0)	-	-	NULL
SMCR8	140775	genome.wustl.edu	37	17	18220942	18220942	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_144775.2	+1	validated	p.S613	0.973	32	0%	44	54.5%	1	100%	-	-	-	NULL
CACNB1	782	genome.wustl.edu	37	17	37331630	37331630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000723.3	-1	reviewed	p.G538D	0.996	73	0%	76	40.8%	1	0%	possibly_damaging(0.484)	tolerated(0.16)	neutral(0.220)	NULL
IGFBP4	3487	genome.wustl.edu	37	17	38612718	38612718	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001552.2	+1	reviewed	p.D220	1.000	36	0%	43	34.9%	63	23.8%	-	-	-	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1
KRTAP4-3	85290	genome.wustl.edu	37	17	39324148	39324148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_033187.1	-1	validated	p.S93G	0.000	46	0%	46	34.8%	0	-	unknown(0)	tolerated(0.3)	-	HMMPfam_Keratin_B2
ACLY	47	genome.wustl.edu	37	17	40025822	40025822	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001096.2	-1	reviewed	p.R986*	1.000	195	0%	155	43.2%	40	17.5%	-	-	-	superfamily_Citrate_synthase_core
UBTF	7343	genome.wustl.edu	37	17	42284892	42284892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014233.2	-1	validated	p.G700V	0.990	321	0%	277	41.5%	147	39.4%	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
DBF4B	80174	genome.wustl.edu	37	17	42809601	42809601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_145663.1	+1	validated	p.R175H	0.997	128	0%	98	39.8%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
CCDC103	388389	genome.wustl.edu	37	17	42979968	42979968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_213607.1	+1	provisional	p.A171V	0.992	60	0%	68	52.9%	4	75%	possibly_damaging(0.692)	deleterious(0.05)	deleterious(0.593)	NULL
CDK5RAP3	80279	genome.wustl.edu	37	17	46058166	46058166	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_176096.1	+1	reviewed	e12+2	1.000	111	0%	102	18.6%	25	96%	-	-	-	-
CA10	56934	genome.wustl.edu	37	17	49731062	49731062	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001082533.1	-1	reviewed	p.T167	1.000	170	0%	135	39.3%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ANKFN1	162282	genome.wustl.edu	37	17	54520268	54520268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_153228.2	+1	validated	p.T361M	0.995	113	0%	116	44.8%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	superfamily_Fibronectin type III
RNF43	54894	genome.wustl.edu	37	17	56435317	56435317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017763.4	-1	validated	p.S607L	0.095	91	0%	77	37.7%	7	57.1%	benign(0.323)	deleterious(0)	deleterious(0.545)	NULL
ENSG00000214176	0	genome.wustl.edu	37	17	62820882	62820882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000397718	-1	known	p.A53T	1.000	54	0%	51	43.1%	3	33.3%	probably_damaging(0.968)	tolerated(0.74)	neutral(0.411)	HMMPfam_RUN
SLC39A11	201266	genome.wustl.edu	37	17	70845927	70845927	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_139177.3	-1	validated	p.G149	0.892	18	0%	27	22.2%	4	0%	-	-	-	HMMPfam_Zip
SPHK1	8877	genome.wustl.edu	37	17	74382138	74382138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_182965.2	+1	validated	p.G114D	1.000	57	0%	48	47.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_cat,HMMSmart_SM00046
MFSD11	79157	genome.wustl.edu	37	17	74738063	74738063	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024311.2	+1	provisional	p.A91	1.000	382	0%	386	41.2%	0	-	-	-	-	HMMPfam_DUF895,superfamily_MFS general substrate transporter
RNF213	57674	genome.wustl.edu	37	17	78313718	78313718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000508628	+1	known	p.T1851P	0.249	25	0%	25	32%	1	100%	possibly_damaging(0.467)	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78350210	78350210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000508628	+1	known	p.A4432V	0.000	141	0%	108	55.6%	10	30%	benign(0)	tolerated(1)	-	NULL
NOTUM	147111	genome.wustl.edu	37	17	79911087	79911087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_178493.5	-1	validated	p.W414L	1.000	16	0%	15	26.7%	32	21.8%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_PAE
NDUFV2	4729	genome.wustl.edu	37	18	9122638	9122638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_021074.4	+1	reviewed	p.R143Q	1.000	118	0%	137	55.5%	342	39.1%	probably_damaging(0.996)	tolerated(0.43)	deleterious(0.475)	HMMPfam_Complex1_24kDa,superfamily_Thiordxn-like_fd
ENSG00000175388	0	genome.wustl.edu	37	18	10760952	10760952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000383408	-1	known	p.A399V	1.000	109	0%	77	46.8%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
NF1P5	4768	genome.wustl.edu	37	18	14156240	14156240	+	Silent	SNP	A	A	T	rs75352733		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000418350	-1	known	p.I86	0.094	40	0%	28	32.1%	0	-	-	-	-	NULL
NPC1	4864	genome.wustl.edu	37	18	21134742	21134742	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000271.4	-1	reviewed	p.T511	0.853	78	0%	94	40.4%	1	0%	-	-	-	HMMPfam_Patched
EPG5	57724	genome.wustl.edu	37	18	43440128	43440128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020964.2	-1	validated	p.A2317V	1.000	103	0%	83	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56149187	56149187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_052947.3	-1	validated	p.M2127I	1.000	380	0%	344	47.4%	1	0%	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	superfamily_Protein kinase-like (PK-like)
LPPR3	79948	genome.wustl.edu	37	19	814698	814699	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024888.1	-1	provisional	p.Y217fs	0.876:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
MIDN	90007	genome.wustl.edu	37	19	1255464	1255464	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_177401.4	+1	validated	p.R300	0.979	15	0%	17	47.1%	35	40%	-	-	-	NULL
CIRBP	1153	genome.wustl.edu	37	19	1272432	1272434	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001280.2	+1	validated	p.N171in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TCF3	6929	genome.wustl.edu	37	19	1625651	1625651	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003200.2	-1	validated	p.S141	0.031	14	0.000	8	0.750	24	41.6%	-	-	-	NULL
GNA11	2767	genome.wustl.edu	37	19	3121127	3121127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002067.2	+1	validated	p.V344M	1.000	43	2.3%	46	56.5%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,superfamily_SSF52540
HDGFRP2	84717	genome.wustl.edu	37	19	4499492	4499492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001001520.1	+1	reviewed	p.R527H	1.000	17	0%	27	44.4%	142	47.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM4B	23030	genome.wustl.edu	37	19	5119673	5119673	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015015.2	+1	validated	p.R375	1.000	38	0%	43	46.5%	3	66.6%	-	-	-	NULL
INSR	3643	genome.wustl.edu	37	19	7117407	7117407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000208.2	-1	reviewed	p.R1270H	0.980	60	0%	43	32.6%	2	0%	benign(0.013)	deleterious(0.01)	neutral(0.406)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZNF317	57693	genome.wustl.edu	37	19	9271271	9271271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_020933.3	+1	provisional	p.R317Q	0.001	50	0%	42	61.9%	6	33.3%	probably_damaging(0.994)	tolerated(0.44)	neutral(0.465)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
S1PR2	9294	genome.wustl.edu	37	19	10334726	10334726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004230.3	-1	validated	p.V286I	0.718	48	0%	40	47.5%	0	-	benign(0.022)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
KLF1	10661	genome.wustl.edu	37	19	12997892	12997892	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006563.3	-1	reviewed	p.P21	0.974	93	0%	86	11.6%	0	-	-	-	-	NULL
DDX39A	10212	genome.wustl.edu	37	19	14523389	14523389	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005804.2	-1	reviewed	p.Q104*	1.000	23	0%	18	27.8%	32	21.8%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
NDUFB7	4713	genome.wustl.edu	37	19	14677610	14677610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004146.4	-1	reviewed	p.E83A	1.000	54	0%	51	29.4%	369	45.2%	possibly_damaging(0.61)	deleterious(0.01)	deleterious(0.617)	HMMPfam_NDUF_B7
CYP4F12	66002	genome.wustl.edu	37	19	15791259	15791259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_023944.2	+1	reviewed	p.T152M	0.990	73	0%	66	39.4%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_p450,superfamily_Cytochrome P450
EPS15L1	58513	genome.wustl.edu	37	19	16536020	16536020	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_021235.1	-1	provisional	p.A222	0.923	32	0%	39	53.8%	6	33.3%	-	-	-	NULL
GLT25D1	79709	genome.wustl.edu	37	19	17692190	17692190	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_024656.2	+1	provisional	p.R602	0.031	40	0%	48	47.9%	25	32%	-	-	-	NULL
UNC13A	23025	genome.wustl.edu	37	19	17746841	17746841	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001080421.2	-1	validated	p.C1157	1.000	74	0%	76	40.8%	0	-	-	-	-	HMMPfam_DUF1041
MAST3	23031	genome.wustl.edu	37	19	18235114	18235114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015016.1	+1	validated	p.V266I	0.889	123	0%	107	41.1%	2	50%	benign(0.003)	tolerated(0.16)	neutral(0.059)	HMMPfam_DUF1908
MAST3	23031	genome.wustl.edu	37	19	18252717	18252717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015016.1	+1	validated	p.A715V	0.997	68	0%	61	44.3%	0	-	possibly_damaging(0.804)	tolerated(0.07)	deleterious(0.621)	NULL
SSBP4	170463	genome.wustl.edu	37	19	18541711	18541711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032627.3	+1	validated	p.A114T	1.000	43	0%	35	31.4%	65	30.7%	benign(0.01)	tolerated(0.08)	neutral(0.300)	HMMPfam_SSDP
ELL	8178	genome.wustl.edu	37	19	18557151	18557151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_006532.3	-1	validated	p.R558W	0.952	40	0%	22	40.9%	7	42.8%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_Occludin_ELL
CERS1	10715	genome.wustl.edu	37	19	18995061	18995061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_021267.3	-1	reviewed	p.M142T	1.000	54	0%	61	41%	1	100%	possibly_damaging(0.561)	tolerated(0.35)	neutral(0.212)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
CILP2	148113	genome.wustl.edu	37	19	19650495	19650495	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_153221.2	+1	validated	p.T24	0.000	31	0%	30	50%	0	-	-	-	-	NULL
ZNF420	147923	genome.wustl.edu	37	19	37619048	37619048	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_144689.3	+1	provisional	p.H385	0.997	134	0%	113	41.6%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF607	84775	genome.wustl.edu	37	19	38190423	38190423	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032689.4	-1	validated	p.G203	0.715	138	0%	171	40.9%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PSMD8	5714	genome.wustl.edu	37	19	38869925	38869925	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002812.4	+1	reviewed	p.L194	1.000	97	0%	115	48.7%	157	42.6%	-	-	-	HMMPfam_SAC3_GANP
RYR1	6261	genome.wustl.edu	37	19	39034482	39034482	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000540.2	+1	reviewed	p.H3993	1.000	77	0%	96	37.5%	0	-	-	-	-	HMMPfam_RIH_assoc
CYP2S1	29785	genome.wustl.edu	37	19	41709508	41709508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_030622.6	+1	reviewed	p.R377Q	0.000	24	0%	19	31.6%	0	-	benign(0.392)	tolerated(0.4)	neutral(0.142)	HMMPfam_p450,superfamily_Cytochrome P450
CEACAM21	90273	genome.wustl.edu	37	19	42091797	42091797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001098506.1	+1	validated	p.A267T	0.056	89	0%	78	42.3%	0	-	possibly_damaging(0.948)	tolerated(0.55)	neutral(0.398)	NULL
ERCC1	2067	genome.wustl.edu	37	19	45923589	45923589	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_202001.2	-1	reviewed	p.F140I	1.000	41	0%	48	39.6%	100	40%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Rad10
QPCTL	54814	genome.wustl.edu	37	19	46205071	46205071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017659.3	+1	validated	p.R301H	0.994	59	0%	55	49.1%	27	70.3%	possibly_damaging(0.942)	deleterious(0.05)	deleterious(0.732)	HMMPfam_Peptidase_M28,superfamily_SSF53187
DMPK	1760	genome.wustl.edu	37	19	46283216	46283216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001081563.1	-1	reviewed	p.K34N	0.001	147	0%	117	56.4%	3	33.3%	benign(0.201)	deleterious(0)	neutral(0.464)	NULL
PRKD2	25865	genome.wustl.edu	37	19	47207593	47207595	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001079880.1	-1	reviewed	p.S242in_frame_del	0.138:0.145:0.144	-	-	-	-	-	-	-	-	-	superfamily_Cysteine-rich domain
SEPW1	6415	genome.wustl.edu	37	19	48284609	48284609	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000396715	+1	known	p.A84	0.929	122	0%	112	42%	388	38.4%	-	-	-	NULL
LIG1	3978	genome.wustl.edu	37	19	48654555	48654555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000234.1	-1	reviewed	p.A170T	0.000	151	0%	133	49.6%	10	70%	benign(0.002)	tolerated(0.46)	neutral(0.012)	NULL
FCGRT	2217	genome.wustl.edu	37	19	50027855	50027855	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001136019.2	+1	reviewed	p.L231	0.663	58	0%	53	34%	190	32.6%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
PTOV1	53635	genome.wustl.edu	37	19	50361835	50361835	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_017432.3	+1	provisional	p.S322	0.118	19	0%	20	35%	574	42.6%	-	-	-	NULL
SIGLEC5	8778	genome.wustl.edu	37	19	52130419	52130419	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003830.2	-1	validated	p.C455	0.014	101	0%	93	44.1%	0	-	-	-	-	NULL
EPS8L1	54869	genome.wustl.edu	37	19	55591638	55591638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_133180.2	+1	reviewed	p.R141C	0.147	17	0%	11	63.6%	9	55.5%	benign(0.015)	tolerated(0.07)	neutral(0.320)	HMMSmart_SM00462,HMMPfam_PTB
PPP6R1	22870	genome.wustl.edu	37	19	55756917	55756917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014931.3	-1	validated	p.L119	1.000	31	0%	37	43.2%	5	60%	-	-	-	NULL
BRSK1	84446	genome.wustl.edu	37	19	55805697	55805697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_032430.1	+1	validated	p.G204R	1.000	146	0%	163	44.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CPXM1	56265	genome.wustl.edu	37	20	2778658	2778658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_019609.4	-1	reviewed	p.R213W	0.011	62	0%	69	44.9%	14	0%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
PLCB1	23236	genome.wustl.edu	37	20	8665628	8665628	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015192.2	+1	reviewed	p.N304	0.998	141	0%	148	48%	0	-	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
ABHD12	26090	genome.wustl.edu	37	20	25290161	25290161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_015600.3	-1	validated	p.A224T	1.000	45	0%	65	35.4%	28	25%	possibly_damaging(0.794)	tolerated(0.08)	deleterious(0.598)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
NINL	22981	genome.wustl.edu	37	20	25470611	25470611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_025176.4	-1	validated	p.R499H	0.894	201	0%	165	41.8%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC32A1	140679	genome.wustl.edu	37	20	37356902	37356902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_080552.2	+1	reviewed	p.A400T	1.000	99	0%	79	36.7%	0	-	benign(0.036)	tolerated(0.26)	neutral(0.036)	HMMPfam_Aa_trans
RIMS4	140730	genome.wustl.edu	37	20	43384857	43384857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_182970.2	-1	validated	p.D243G	1.000	43	0%	34	38.2%	0	-	possibly_damaging(0.793)	deleterious(0.02)	deleterious(0.681)	NULL
SDC4	6385	genome.wustl.edu	37	20	43959164	43959164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002999.2	-1	reviewed	p.G96E	0.077	103	0%	101	51.5%	29	48.2%	probably_damaging(0.977)	tolerated(0.59)	neutral(0.423)	NULL
DOK5	55816	genome.wustl.edu	37	20	53208299	53208299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018431.3	+1	reviewed	p.R185L	1.000	240	0%	241	42.7%	2	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_IRS,HMMSmart_SM00310,superfamily_PH domain-like
KRTAP20-2	337976	genome.wustl.edu	37	21	32007684	32007684	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_181616.1	+1	provisional	p.G34	0.017	327	0%	259	42.5%	0	-	-	-	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34012038	34012038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_003895.3	-1	validated	p.A1214T	0.869	201	0%	193	43.5%	0	-	possibly_damaging(0.903)	tolerated(0.13)	deleterious(0.611)	NULL
SON	6651	genome.wustl.edu	37	21	34923049	34923049	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_138927.1	+1	reviewed	p.T504	1.000	85	0%	55	43.6%	2	50%	-	-	-	NULL
DYRK1A	1859	genome.wustl.edu	37	21	38853130	38853130	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001396.3	+1	reviewed	e4+2	1.000	118	0%	124	43.5%	2	100%	-	-	-	-
BRWD1	54014	genome.wustl.edu	37	21	40622742	40622745	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_018963.3	-1	reviewed	p.K776fs	0.653:0.951:0.999:1.000	-	-	-	-	-	-	-	-	-	superfamily_WD40 repeat-like
COL6A1	1291	genome.wustl.edu	37	21	47410311	47410311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001848.2	+1	reviewed	p.G326D	0.999	24	0%	19	63.2%	30	6.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Collagen
POTEH	23784	genome.wustl.edu	37	22	16287605	16287605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001136213.1	-1	provisional	p.L94H	0.013	194	0.5%	195	22.1%	0	-	benign(0.258)	deleterious(0)	deleterious(0.472)	NULL
C22orf25	128989	genome.wustl.edu	37	22	20024461	20024461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000401833	+1	known	p.A8V	0.000	83	0%	81	45.7%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZNF280A	129025	genome.wustl.edu	37	22	22868784	22868784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_080740.3	-1	reviewed	p.E391K	0.936	159	0%	169	36.7%	1	0%	benign(0.227)	deleterious(0)	neutral(0.467)	NULL
IGLV2-18	28814	genome.wustl.edu	37	22	23077391	23077391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000390310	+1	known	p.W56C	0.997	160	0%	129	14%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GATSL3	652968	genome.wustl.edu	37	22	30683426	30683426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001037666.2	-1	validated	p.A103V	0.989	22	0%	11	36.4%	9	33.3%	possibly_damaging(0.824)	tolerated(0.05)	deleterious(0.657)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32108841	32108841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_173566.2	-1	validated	p.G1662R	0.939	98	0%	80	36.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZBED4	9889	genome.wustl.edu	37	22	50277791	50277791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_014838.2	+1	validated	p.V161M	1.000	47	0%	53	45.3%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-BED,HMMSmart_SM00614
ENSG00000211459	0	genome.wustl.edu	37	MT	944	944	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000389680	+1	known	NULL	NULL	71	0%	97	93.8%	2481	91.2%	-	-	-	-
ZBED1	9189	genome.wustl.edu	37	X	2406844	2406844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004729.3	-1	reviewed	p.A639	0.985	68	1.5%	71	42.3%	10	60%	-	-	-	HMMPfam_hATC
ZBED1	9189	genome.wustl.edu	37	X	2407647	2407647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_004729.3	-1	reviewed	p.A372T	0.967	59	0%	48	43.8%	5	60%	benign(0.013)	tolerated(0.65)	neutral(0.004)	NULL
TBL1X	6907	genome.wustl.edu	37	X	9660259	9660259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001139466.1	+1	reviewed	p.P286S	1.000	127	0%	133	47.4%	0	-	benign(0.108)	tolerated(0.14)	neutral(0.258)	HMMSmart_SM00320
SHROOM2	357	genome.wustl.edu	37	X	9863222	9863222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001649.2	+1	reviewed	p.S425N	0.000	66	0%	62	33.9%	1	0%	benign(0.039)	tolerated(0.59)	neutral(0.006)	NULL
SHROOM2	357	genome.wustl.edu	37	X	9863522	9863522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001649.2	+1	reviewed	p.G525D	0.000	9	0.000	13	0.385	1	0%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
EIF2S3	1968	genome.wustl.edu	37	X	24075832	24075832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001415.3	+1	reviewed	p.T115M	1.000	123	0%	112	48.2%	37	13.5%	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM47C	442444	genome.wustl.edu	37	X	37028001	37028001	+	Silent	SNP	C	C	T	rs149060980	by1000genomes	TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001013736.2	+1	validated	p.R506	0.000	176	0%	188	40.4%	0	-	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39931658	39931658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001123385.1	-1	reviewed	p.T981A	1.000	56	0%	48	43.8%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
USP9X	8239	genome.wustl.edu	37	X	41089043	41089043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001039590.2	+1	reviewed	p.A2481V	0.098	154	0%	177	44.6%	9	22.2%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
SLC35A2	7355	genome.wustl.edu	37	X	48762204	48762204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005660.1	-1	provisional	p.A328T	1.000	78	0%	67	55.2%	11	72.7%	benign(0.097)	tolerated(0.35)	neutral(0.028)	HMMPfam_Nuc_sug_transp,superfamily_Multidrug resistance efflux transporter EmrE
CXorf67	340602	genome.wustl.edu	37	X	51149947	51149947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000342995	+1	known	p.A27S	0.000	75	0%	58	44.8%	0	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	NULL
MED12	9968	genome.wustl.edu	37	X	70345250	70345250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005120.2	+1	reviewed	p.G759V	1.000	73	0%	64	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86877277	86877277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_057162.2	+1	reviewed	p.L331F	1.000	172	0%	159	46.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
PCDH19	57526	genome.wustl.edu	37	X	99661801	99661801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001105243.1	-1	reviewed	p.E599K	1.000	136	0%	135	35.6%	0	-	possibly_damaging(0.948)	deleterious(0.04)	deleterious(0.740)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662990	99662990	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001105243.1	-1	reviewed	p.S202	0.094	55	0%	57	36.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
MIR1911	100302222	genome.wustl.edu	37	X	113997762	113997762	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000410783	+1	known	NULL	1.000	124	0%	109	45.9%	0	-	-	-	-	-
HTR2C	3358	genome.wustl.edu	37	X	114141212	114141212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_000868.2	+1	reviewed	p.N204S	0.956	118	0%	81	34.6%	0	-	benign(0.054)	tolerated(0.3)	neutral(0.032)	HMMPfam_7tm_1,superfamily_SSF81321
HS6ST2	90161	genome.wustl.edu	37	X	132090983	132090983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_001077188.1	-1	reviewed	p.C267Y	1.000	43	0%	35	34.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HS6ST
FMR1NB	158521	genome.wustl.edu	37	X	147090229	147090229	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_152578.2	+1	validated	p.R210	0.787	385	0%	395	40.3%	0	-	-	-	-	NULL
AFF2	2334	genome.wustl.edu	37	X	148048589	148048589	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_002025.3	+1	reviewed	p.P1061	1.000	264	0%	214	38.8%	0	-	-	-	-	HMMPfam_AF-4
SLC6A8	6535	genome.wustl.edu	37	X	152959495	152959495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000328897	+1	known	p.R431M	0.000	34	0%	42	38.1%	0	-	benign(0.146)	deleterious(0)	neutral(0.457)	HMMPfam_SNF
PLXNB3	5365	genome.wustl.edu	37	X	153035876	153035876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	NM_005393.2	+1	reviewed	p.V624I	0.000	92	0%	69	43.5%	1	0%	benign(0.227)	tolerated(0.13)	neutral(0.275)	HMMSmart_PSI
TAZ	6901	genome.wustl.edu	37	X	153648448	153648448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U8-01A-11D-A10B-09	TCGA-BS-A0U8-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	200a23d8-7c59-45c7-978c-f734c0f3ed83	7fde9da9-d516-42af-af38-d7765b5957f5	ENST00000369776	+1	known	p.G152R	0.000	113	0%	96	45.8%	5	0%	unknown(0)	tolerated(0.49)	-	NULL
