Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
KLHL17	339451	genome.wustl.edu	37	1	900462	900462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_198317.1	+1	provisional	p.A607V	0.847	73	0%	70	11.4%	5	0%	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_Kelch_1,HMMSmart_Kelch
PARK7	11315	genome.wustl.edu	37	1	8030993	8030993	+	Missense_Mutation	SNP	C	C	T	rs182164240	by1000genomes	TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001123377.1	+1	reviewed	p.R98W	0.097	333	0.3%	349	24.1%	555	38.1%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_DJ-1_PfpI,superfamily_Class I glutamine amidotransferase-like
RERE	473	genome.wustl.edu	37	1	8418863	8418863	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001042681.1	-1	reviewed	p.P1244	0.000	141	0%	216	25.9%	34	41.1%	-	-	-	HMMPfam_Atrophin-1
PRAMEF7	441871	genome.wustl.edu	37	1	12979720	12979720	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001012277.1	+1	provisional	p.L304	0.001	360	0%	306	15%	0	-	-	-	-	superfamily_RNI-like
CROCC	9696	genome.wustl.edu	37	1	17273358	17273358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014675.3	+1	validated	p.E796K	1.000	48	0%	28	14.3%	11	18.1%	unknown(0)	deleterious(0.04)	-	NULL
PADI3	51702	genome.wustl.edu	37	1	17603144	17603144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_016233.2	+1	reviewed	p.A480T	1.000	281	0%	273	23.1%	0	-	benign(0.007)	tolerated(0.75)	neutral(0.002)	HMMPfam_PAD,superfamily_SSF55909
PLA2G2E	30814	genome.wustl.edu	37	1	20249177	20249177	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014589.1	-1	provisional	p.Q38*	1.000	101	0%	85	20%	0	-	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
USP48	84196	genome.wustl.edu	37	1	22078004	22078004	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032236.5	-1	reviewed	p.L257*	1.000	290	0%	346	23.4%	6	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
HSPG2	3339	genome.wustl.edu	37	1	22181416	22181416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000374695	-1	known	p.A2020T	0.987	180	0%	142	29.6%	16	6.2%	benign(0.235)	tolerated(0.08)	neutral(0.324)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_I-set,superfamily_Immunoglobulin
LUZP1	7798	genome.wustl.edu	37	1	23418889	23418889	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001142546.1	-1	reviewed	p.S622	0.000	222	0%	160	16.9%	7	42.8%	-	-	-	NULL
NIPAL3	57185	genome.wustl.edu	37	1	24775979	24775979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020448.4	+1	validated	p.V135I	0.003	140	0%	114	14%	11	45.4%	benign(0.002)	tolerated(0.51)	neutral(0.009)	HMMPfam_DUF803
ARID1A	8289	genome.wustl.edu	37	1	27107151	27107151	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006015.4	+1	reviewed	p.Y2254*	0.857	71	0%	79	25.3%	58	41.3%	-	-	-	NULL
PTAFR	5724	genome.wustl.edu	37	1	28477310	28477310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000952.4	-1	validated	p.V75I	0.037	268	0%	319	24.1%	7	0%	benign(0.002)	tolerated(0.93)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SRSF4	6429	genome.wustl.edu	37	1	29486987	29486987	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005626.4	-1	reviewed	p.D50	1.000	257	0%	316	24.7%	37	40.5%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PHC2	1912	genome.wustl.edu	37	1	33820474	33820474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_198040.2	-1	reviewed	p.A453T	0.995	133	0%	127	21.3%	0	-	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34312506	34312506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_052896.3	-1	validated	p.G298R	1.000	80	0%	65	21.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZMYM1	79830	genome.wustl.edu	37	1	35580267	35580267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_024772.3	+1	validated	p.D946N	0.016	29	0%	20	30%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KLF17	128209	genome.wustl.edu	37	1	44596414	44596414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_173484.3	+1	validated	p.A386P	0.015	100	0%	138	25.4%	0	-	probably_damaging(0.981)	tolerated(0.47)	neutral(0.436)	NULL
AGL	178	genome.wustl.edu	37	1	100346326	100346326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000028.2	+1	reviewed	p.T625K	1.000	641	0%	717	25.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_(Trans)glycosidases
LOC126987	126987	genome.wustl.edu	37	1	106623395	106623395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	XM_002342097.1	-1	model	p.R222W	0.761	39	0%	37	13.5%	0	-	-	-	-	NULL
MAGI3	260425	genome.wustl.edu	37	1	114123198	114123198	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001142782.1	+1	validated	p.P156	1.000	201	0%	244	18.4%	3	33.3%	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540
CLK2	1196	genome.wustl.edu	37	1	155233072	155233072	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003993.2	-1	reviewed	p.F478	0.798	149	0%	117	35%	49	32.6%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DCAF8	50717	genome.wustl.edu	37	1	160209729	160209729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015726.3	-1	reviewed	p.R161W	1.000	83	0%	70	30%	27	29.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
DUSP27	92235	genome.wustl.edu	37	1	167096221	167096221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001080426.1	+1	provisional	p.A618V	0.018	80	0%	125	17.6%	0	-	benign(0.007)	tolerated(0.08)	neutral(0.300)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178421771	178421771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_170692.2	+1	reviewed	p.L647M	1.000	292	0%	283	23%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP
CACNA1S	779	genome.wustl.edu	37	1	201019592	201019592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000069.2	-1	reviewed	p.R1389Q	1.000	218	0%	292	26%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
IGFN1	91156	genome.wustl.edu	37	1	201184862	201184862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000451870	+1	known	p.R607Q	0.974	36	0%	42	35.7%	0	-	probably_damaging(0.979)	tolerated(0.36)	neutral(0.442)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NFASC	23114	genome.wustl.edu	37	1	204945872	204945872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015090.3	+1	reviewed	p.A605T	0.987	112	0%	76	21.1%	5	0%	benign(0.052)	deleterious(0.04)	neutral(0.352)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
SLC26A9	115019	genome.wustl.edu	37	1	205896680	205896680	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_134325.2	-1	reviewed	p.H385	0.496	255	0%	312	26%	0	-	-	-	-	HMMPfam_Sulfate_transp
CR1	1378	genome.wustl.edu	37	1	207793370	207793370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000651.4	+1	reviewed	p.A2404	0.000	276	0%	291	23.7%	1	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PTPN14	5784	genome.wustl.edu	37	1	214557322	214557322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005401.4	-1	reviewed	p.E626K	1.000	43	0%	45	26.7%	4	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HIST3H2BB	128312	genome.wustl.edu	37	1	228646034	228646034	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_175055.2	+1	reviewed	p.N68	1.000	249	0.4%	274	27.4%	0	-	-	-	-	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
TRIM67	440730	genome.wustl.edu	37	1	231344781	231344781	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001004342.3	+1	validated	p.D636	0.987	121	0%	109	29.4%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ZP4	57829	genome.wustl.edu	37	1	238050795	238050795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_021186.2	-1	reviewed	p.P207Q	0.018	187	0.5%	180	29.4%	0	-	probably_damaging(0.993)	tolerated(0.11)	deleterious(0.722)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ZP4	57829	genome.wustl.edu	37	1	238051724	238051724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_021186.2	-1	reviewed	p.D163Y	0.314	216	0%	237	18.6%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,PatternScan_P_TREFOIL
ADAM17	6868	genome.wustl.edu	37	2	9676879	9676879	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003183.4	-1	reviewed	p.N103	0.602	502	0%	576	22.6%	8	25%	-	-	-	NULL
TAF1B	9014	genome.wustl.edu	37	2	10008496	10008496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005680.2	+1	reviewed	p.A164V	0.676	167	0%	210	21.9%	6	33.3%	benign(0)	deleterious(0)	neutral(0.445)	NULL
GREB1	9687	genome.wustl.edu	37	2	11725319	11725319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014668.3	+1	reviewed	p.R312C	1.000	236	0%	261	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
APOB	338	genome.wustl.edu	37	2	21230830	21230830	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000384.2	-1	reviewed	p.V2970	0.219	285	0%	268	31.3%	0	-	-	-	-	NULL
OTOF	9381	genome.wustl.edu	37	2	26705407	26705407	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_194248.2	-1	reviewed	p.V482	0.042	101	0%	84	22.6%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MAPRE3	22924	genome.wustl.edu	37	2	27247085	27247085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_012326.2	+1	reviewed	p.R130Q	0.999	143	0%	149	23.5%	24	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calponin-homology domain CH-domain
ENSG00000181250	0	genome.wustl.edu	37	2	33952650	33952650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000322472	-1	known	p.V65I	1.000	79	0%	45	11.1%	0	-	-	-	-	HMMPfam_MARVEL
MSH2	4436	genome.wustl.edu	37	2	47703672	47703672	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000251.1	+1	reviewed	p.T724	0.117	244	0%	282	29.8%	20	40%	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
C2orf73	129852	genome.wustl.edu	37	2	54587506	54587506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001100396.1	+1	validated	p.C224Y	0.995	99	0%	135	25.9%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73827898	73827898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015120.4	+1	reviewed	p.E3920A	0.999	312	0%	413	26.2%	18	55.5%	possibly_damaging(0.454)	deleterious(0.01)	deleterious(0.554)	NULL
DQX1	165545	genome.wustl.edu	37	2	74752202	74752202	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_133637.2	-1	validated	p.T122S	0.678	75	0%	49	12.2%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC138	165055	genome.wustl.edu	37	2	109489908	109489908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_144978.1	+1	provisional	p.K565N	0.369	194	0%	161	31.1%	8	50%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
TMEM177	80775	genome.wustl.edu	37	2	120439078	120439078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001105198.1	+1	validated	p.A217T	0.455	54	0%	22	18.2%	27	37%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125192250	125192250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_130773.2	+1	reviewed	p.L240Q	0.996	97	0%	121	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
GPR39	2863	genome.wustl.edu	37	2	133402882	133402882	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001508.2	+1	validated	p.F355	0.638	49	0%	33	27.3%	5	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
LRP2	4036	genome.wustl.edu	37	2	170038097	170038097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004525.2	-1	reviewed	p.A3344T	0.948	284	0%	280	27.9%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
TTN	7273	genome.wustl.edu	37	2	179460304	179460304	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_133378.4	-1	reviewed	p.R16691Q	0.978	233	0%	242	24%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179643731	179643731	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_133379.3	-1	reviewed	p.G1360*	1.000	247	0%	232	17.2%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
IGFBP2	3485	genome.wustl.edu	37	2	217528687	217528687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000597.2	+1	validated	p.R280C	1.000	136	0%	87	16.1%	155	3.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
CCDC108	255101	genome.wustl.edu	37	2	219888026	219888026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_194302.2	-1	provisional	p.R908H	0.431	121	0%	115	21.7%	7	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_PapD-like
AGAP1	116987	genome.wustl.edu	37	2	236708037	236708037	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001037131.1	+1	validated	p.S276	0.991	87	2.3%	91	24.2%	2	0%	-	-	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4859885	4859885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001099952.2	+1	reviewed	p.E2615K	1.000	268	0%	341	25.8%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
OSBPL10	114884	genome.wustl.edu	37	3	31712319	31712319	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000429492	-1	known	p.R397*	1.000	236	0%	162	23.5%	13	53.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Oxysterol_BP
ARPP21	10777	genome.wustl.edu	37	3	35725305	35725305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_016300.4	+1	validated	p.Q87*	1.000	248	0%	248	23%	0	-	-	-	-	NULL
GORASP1	64689	genome.wustl.edu	37	3	39142560	39142560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_031899.2	-1	reviewed	p.G128S	1.000	127	0%	137	32.1%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ domain-like,HMMPfam_GRASP55_65
ZNF662	389114	genome.wustl.edu	37	3	42956105	42956105	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001134656.1	+1	validated	p.G206	0.000	159	0%	213	26.8%	1	100%	-	-	-	NULL
ALS2CL	259173	genome.wustl.edu	37	3	46729621	46729622	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_147129.2	-1	validated	p.90in_frame_insL	0.021:0.057	-	-	-	-	-	-	-	-	-	NULL
VPRBP	9730	genome.wustl.edu	37	3	51458310	51458310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014703.2	-1	validated	p.G652D	1.000	251	0%	257	22.2%	6	50%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_ARM repeat
SEMA3G	56920	genome.wustl.edu	37	3	52474033	52474033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020163.1	-1	provisional	p.R409*	1.000	112	0%	70	28.6%	10	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
IL17RB	55540	genome.wustl.edu	37	3	53889340	53889340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_018725.3	+1	reviewed	p.M167I	1.000	142	0.7%	174	15.5%	0	-	possibly_damaging(0.891)	tolerated(0.25)	neutral(0.387)	NULL
LRIG1	26018	genome.wustl.edu	37	3	66463324	66463324	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015541.2	-1	validated	p.A254	0.650	257	0%	239	22.2%	59	32.2%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CNTN3	5067	genome.wustl.edu	37	3	74347150	74347150	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020872.1	-1	validated	p.G787*	1.000	386	0%	409	23.5%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GPR15	2838	genome.wustl.edu	37	3	98251449	98251449	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005290.1	+1	provisional	p.I191N	0.000	361	0%	333	23.1%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GTPBP8	29083	genome.wustl.edu	37	3	112718408	112718408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014170.2	+1	validated	p.V261A	1.000	231	0%	268	24.3%	5	60%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PIK3R4	30849	genome.wustl.edu	37	3	130452955	130452955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014602.2	-1	validated	p.R296H	0.987	22	0%	30	23.3%	3	33.3%	benign(0.389)	tolerated(0.14)	neutral(0.374)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like,superfamily_ARM-type_fold
FAM194A	131831	genome.wustl.edu	37	3	150421680	150421680	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_152394.3	-1	validated	p.A2	0.003	109	0%	93	24.7%	0	-	-	-	-	NULL
CCNL1	57018	genome.wustl.edu	37	3	156866320	156866320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020307.2	-1	validated	p.R431C	1.000	510	0%	487	24.8%	30	23.3%	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	NULL
KCNMB3	27094	genome.wustl.edu	37	3	178962353	178962353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014407.3	-1	reviewed	p.V130A	1.000	148	0%	187	21.4%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CaKB
VPS8	23355	genome.wustl.edu	37	3	184714201	184714201	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001009921.2	+1	validated	p.G1250R	1.000	156	0%	201	25.4%	10	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DGKQ	1609	genome.wustl.edu	37	4	961568	961568	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000509465	-1	known	p.T225M	0.001	38	0%	28	21.4%	3	66.6%	-	-	-	NULL
CYTL1	54360	genome.wustl.edu	37	4	5021020	5021020	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000509419	-1	known	p.R50Q	0.949	52	0%	27	22.2%	2	0%	-	-	-	NULL
NCAPG	64151	genome.wustl.edu	37	4	17839254	17839254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_022346.3	+1	validated	p.N766Y	0.995	263	0%	305	28.2%	8	25%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
CCDC149	91050	genome.wustl.edu	37	4	24838064	24838064	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001130726.1	-1	validated	p.K243fs	0.995	-	-	-	-	-	-	-	-	-	HMMPfam_DUF2353
N4BP2	55728	genome.wustl.edu	37	4	40123257	40123257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_018177.3	+1	reviewed	p.V1176M	0.000	73	0%	73	20.5%	1	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
AASDH	132949	genome.wustl.edu	37	4	57250442	57250442	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_181806.2	-1	validated	p.H8	0.032	170	0%	183	24.6%	3	33.3%	-	-	-	superfamily_Acetyl-CoA synthetase-like
HTN1	3346	genome.wustl.edu	37	4	70918824	70918824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002159.2	+1	validated	p.A11T	0.008	602	0%	734	22.5%	0	-	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
ANKRD50	57182	genome.wustl.edu	37	4	125591377	125591377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020337.2	-1	validated	p.A1019T	1.000	84	0%	80	21.2%	3	66.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126240343	126240343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_024582.4	+1	validated	p.G926D	1.000	102	0%	85	22.4%	0	-	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
IRF2	3660	genome.wustl.edu	37	4	185320080	185320080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002199.3	-1	reviewed	p.S228F	1.000	113	0%	109	30.3%	24	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5209340	5209340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_139056.2	+1	reviewed	p.C529Y	1.000	180	0%	256	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67569797	67569798	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_181523.1	+1	reviewed	p.S154fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
HEXB	3074	genome.wustl.edu	37	5	73981173	73981173	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000521.3	+1	reviewed	p.L30	0.026	18	0%	11	36.4%	9	22.2%	-	-	-	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74443141	74443141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000274361	-1	known	p.S699P	0.304	611	0%	651	25.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ANK
BHMT	635	genome.wustl.edu	37	5	78417160	78417160	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001713.2	+1	reviewed	p.G199	0.996	144	0%	135	31.1%	0	-	-	-	-	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
THBS4	7060	genome.wustl.edu	37	5	79354054	79354054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003248.4	+1	reviewed	p.V189A	1.000	116	0%	111	27%	0	-	benign(0.198)	tolerated(0.33)	neutral(0.043)	HMMSmart_TSPN
THBS4	7060	genome.wustl.edu	37	5	79355623	79355623	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003248.4	+1	reviewed	p.P294	0.196	91	0%	94	26.6%	3	33.3%	-	-	-	HMMSmart_EGF,superfamily_SSF57196
HARS	3035	genome.wustl.edu	37	5	140057274	140057274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002109.3	-1	reviewed	p.R232H	1.000	422	0%	548	22.4%	44	36.3%	benign(0.152)	deleterious(0.02)	neutral(0.397)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
PCDHA12	56137	genome.wustl.edu	37	5	140255227	140255227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_018903.2	+1	reviewed	p.A57V	0.000	85	0%	66	22.7%	0	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
CCNJL	79616	genome.wustl.edu	37	5	159682576	159682576	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_024565.5	-1	validated	p.T289	0.023	218	0.5%	192	32.8%	0	-	-	-	-	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
ENSG00000241956	0	genome.wustl.edu	37	5	164028094	164028094	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000486913	+1	known	NULL	1.000	80	0%	47	25.5%	0	-	-	-	-	-
STC2	8614	genome.wustl.edu	37	5	172745050	172745050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003714.2	-1	reviewed	p.A237T	0.000	143	0%	96	24%	4	0%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_Stanniocalcin
HK3	3101	genome.wustl.edu	37	5	176310838	176310838	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002115.2	-1	reviewed	p.N662	1.000	141	0%	118	32.2%	3	0%	-	-	-	HMMPfam_Hexokinase_1,superfamily_SSF53067
C5orf60	285679	genome.wustl.edu	37	5	179069426	179069426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001142306.1	-1	provisional	p.A250T	0.006	376	0%	447	26.4%	0	-	probably_damaging(0.965)	-	-	NULL
EXOC2	55770	genome.wustl.edu	37	6	497476	497476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_018303.4	-1	reviewed	p.S817F	1.000	150	0%	157	26.8%	9	33.3%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
CAGE1	285782	genome.wustl.edu	37	6	7387403	7387403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000502583	-1	known	p.N2D	0.455	172	0%	159	24.5%	0	-	possibly_damaging(0.763)	deleterious(0)	deleterious(0.728)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24843671	24843671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014722.2	-1	validated	p.S447P	0.024	303	0%	332	25.3%	4	0%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
HIST1H1B	3009	genome.wustl.edu	37	6	27834630	27834632	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005322.2	-1	reviewed	p.K226in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54805185	54805185	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001010872.1	+1	validated	p.N472	1.000	127	0%	106	25.5%	0	-	-	-	-	NULL
SMAP1	60682	genome.wustl.edu	37	6	71464755	71464755	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001044305.1	+1	reviewed	p.P109fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
UFL1	23376	genome.wustl.edu	37	6	96986508	96986508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015323.4	+1	validated	p.P327H	1.000	142	0%	155	23.9%	9	44.4%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
SIM1	6492	genome.wustl.edu	37	6	100897473	100897473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005068.2	-1	reviewed	p.V151M	1.000	157	0%	148	25.7%	0	-	benign(0.382)	deleterious(0.04)	deleterious(0.471)	superfamily_SSF55785
SESN1	27244	genome.wustl.edu	37	6	109319816	109319816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014454.1	-1	provisional	p.T291I	1.000	119	0.8%	173	21.4%	16	18.7%	probably_damaging(0.972)	tolerated(0.3)	neutral(0.443)	HMMPfam_PA26
CEP85L	387119	genome.wustl.edu	37	6	118886824	118886824	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001042475.2	-1	validated	p.T296	1.000	270	0%	306	23.2%	0	-	-	-	-	NULL
MED23	9439	genome.wustl.edu	37	6	131931365	131931365	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004830.2	-1	reviewed	p.L300	1.000	144	0%	150	24.7%	11	9%	-	-	-	NULL
MYB	4602	genome.wustl.edu	37	6	135514982	135514982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001130173.1	+1	reviewed	p.S257G	1.000	594	0%	556	26.1%	1	100%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151674461	151674461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005100.3	+1	reviewed	p.E1645D	0.000	195	0%	261	17.6%	12	41.6%	benign(0.147)	tolerated(0.45)	neutral(0.025)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159654584	159654584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032532.2	+1	validated	p.Q1014K	0.000	30	0%	35	25.7%	4	0%	unknown(0)	deleterious(0.02)	-	NULL
RADIL	55698	genome.wustl.edu	37	7	4874346	4874346	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_018059.4	-1	validated	p.P436	0.028	22	0%	16	31.2%	0	-	-	-	-	NULL
FERD3L	222894	genome.wustl.edu	37	7	19184670	19184670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_152898.2	-1	validated	p.A106T	1.000	207	0%	146	22.6%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_HLH,superfamily_HLH_basic
NPC1L1	29881	genome.wustl.edu	37	7	44579498	44579498	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_013389.2	-1	reviewed	p.E166	0.592	66	0%	62	22.6%	0	-	-	-	-	NULL
H2AFV	94239	genome.wustl.edu	37	7	44875212	44875212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_012412.4	-1	reviewed	p.R81C	1.000	164	0%	210	25.2%	180	39.4%	benign(0.26)	deleterious(0)	deleterious(0.472)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
CLIP2	7461	genome.wustl.edu	37	7	73803434	73803434	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000493166	+1	known	p.R105H	0.006	26	0%	26	30.8%	6	0%	-	-	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87912125	87912125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_024636.2	-1	validated	p.R272Q	0.999	172	0.6%	246	26.4%	1	0%	benign(0.009)	tolerated(0.15)	neutral(0.241)	HMMPfam_Ferric_reduct
SMURF1	57154	genome.wustl.edu	37	7	98633233	98633233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020429.1	-1	reviewed	p.A665V	1.000	128	0.8%	101	19.8%	8	37.5%	benign(0.036)	tolerated(0.89)	neutral(0.002)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MUC17	140453	genome.wustl.edu	37	7	100684272	100684272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001040105.1	+1	provisional	p.S3192N	0.000	410	0%	486	23.3%	0	-	probably_damaging(0.99)	-	-	NULL
ORAI2	80228	genome.wustl.edu	37	7	102087259	102087259	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001126340.1	+1	validated	p.P175	0.001	110	0%	94	28.7%	24	8.3%	-	-	-	HMMPfam_DUF1650
ATXN7L1	222255	genome.wustl.edu	37	7	105283308	105283308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020725.1	-1	validated	p.N280S	1.000	859	0%	882	24.4%	2	0%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_SCA7
OPN1SW	611	genome.wustl.edu	37	7	128414669	128414669	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001708.2	-1	reviewed	p.T190	0.905	153	0%	283	24.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KCNH2	3757	genome.wustl.edu	37	7	150642533	150642533	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000238.2	-1	reviewed	p.R1134*	0.996	15	0%	33	33.3%	0	-	-	-	-	NULL
LOXL2	4017	genome.wustl.edu	37	8	23190949	23190949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002318.2	-1	reviewed	p.G311R	0.056	67	0%	34	11.8%	13	0%	benign(0.016)	tolerated(0.44)	neutral(0.013)	superfamily_Srcr_receptor
ENTPD4	9583	genome.wustl.edu	37	8	23290619	23290619	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004901.3	-1	validated	p.G557	1.000	59	0%	51	17.6%	25	40%	-	-	-	NULL
PNMA2	10687	genome.wustl.edu	37	8	26365469	26365469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_007257.5	-1	validated	p.Y268C	0.923	138	0%	133	15.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Retrotrans_gag
ESCO2	157570	genome.wustl.edu	37	8	27645471	27645471	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001017420.2	+1	reviewed	p.N361	0.001	215	0%	467	25.3%	1	0%	-	-	-	NULL
WWP1	11059	genome.wustl.edu	37	8	87450848	87450848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_007013.3	+1	validated	p.R595H	1.000	346	0%	522	25.3%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
FER1L6	654463	genome.wustl.edu	37	8	125072870	125072870	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001039112.2	+1	validated	p.G1023*	0.996	336	0%	309	23.6%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ZFAT	57623	genome.wustl.edu	37	8	135621016	135621016	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020863.3	-1	reviewed	p.Y247	0.325	222	0%	266	23.7%	1	0%	-	-	-	NULL
EIF2C2	27161	genome.wustl.edu	37	8	141559336	141559336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000220592	-1	known	p.P489S	1.000	84	0%	81	24.7%	3	33.3%	benign(0.276)	deleterious(0)	deleterious(0.474)	NULL
PLEC	5339	genome.wustl.edu	37	8	144995412	144995412	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_201380.2	-1	reviewed	p.H2996	0.862	145	0%	150	23.3%	41	19.5%	-	-	-	HMMSmart_SM00250,superfamily_Plakin repeat
GPAA1	8733	genome.wustl.edu	37	8	145139491	145139491	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003801.3	+1	reviewed	p.Y330F	0.998	103	0%	91	14.3%	114	31.5%	benign(0.002)	tolerated(0.7)	neutral(0.002)	HMMPfam_Gaa1
FREM1	158326	genome.wustl.edu	37	9	14746950	14746950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_144966.5	-1	reviewed	p.A2037T	0.003	181	0%	170	25.3%	4	0%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
TEK	7010	genome.wustl.edu	37	9	27197529	27197529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000459.3	+1	reviewed	p.R614Q	0.997	129	2.3%	151	22.5%	4	0%	probably_damaging(0.956)	tolerated(0.32)	neutral(0.424)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
DAPK1	1612	genome.wustl.edu	37	9	90321196	90321196	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004938.2	+1	reviewed	p.Q1070	1.000	66	0%	49	28.6%	33	33.3%	-	-	-	NULL
PHF2	5253	genome.wustl.edu	37	9	96436132	96436132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005392.3	+1	reviewed	p.D872N	1.000	57	0%	40	30%	22	18.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GRIN3A	116443	genome.wustl.edu	37	9	104499576	104499576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_133445.2	-1	reviewed	p.P229L	1.000	90	0%	76	17.1%	0	-	possibly_damaging(0.777)	tolerated(0.07)	deleterious(0.609)	superfamily_SSF53822
PTPN3	5774	genome.wustl.edu	37	9	112166751	112166751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002829.3	-1	reviewed	p.G644R	1.000	192	0%	159	28.9%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52799
SVEP1	79987	genome.wustl.edu	37	9	113198775	113198775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_153366.3	-1	validated	p.A1550V	1.000	208	0%	175	24.6%	1	0%	probably_damaging(0.991)	tolerated(0.33)	neutral(0.468)	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
RC3H2	54542	genome.wustl.edu	37	9	125643050	125643051	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001100588.1	-1	validated	p.S261fs	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
PPP2R4	5524	genome.wustl.edu	37	9	131885349	131885349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_178001.1	+1	reviewed	p.G50R	1.000	52	0%	81	21%	38	34.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PTPA
RAPGEF1	2889	genome.wustl.edu	37	9	134497216	134497216	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000414781	-1	known	p.A4T	0.155	84	0%	58	20.7%	8	0%	-	-	-	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139417612	139417612	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_017617.3	-1	reviewed	p.C144	1.000	38	0%	23	34.8%	6	0%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
ZMYND11	10771	genome.wustl.edu	37	10	293392	293392	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006624.4	+1	reviewed	p.E365*	1.000	235	0%	375	26.7%	13	0%	-	-	-	NULL
SPAG6	9576	genome.wustl.edu	37	10	22680763	22680763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_012443.2	+1	reviewed	p.A371S	1.000	257	0%	282	25.2%	0	-	benign(0.082)	tolerated(0.14)	neutral(0.256)	superfamily_ARM repeat
LYZL2	119180	genome.wustl.edu	37	10	30915087	30915087	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_183058.2	-1	validated	p.W128*	0.947	259	0%	235	24.3%	0	-	-	-	-	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
RBP3	5949	genome.wustl.edu	37	10	48390525	48390525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002900.2	-1	reviewed	p.Q118P	0.905	100	0%	66	31.8%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	HMMSmart_SM00245,superfamily_ClpP/crotonase
C10orf71	118461	genome.wustl.edu	37	10	50532748	50532748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001135196.1	+1	validated	p.P720S	0.455	109	0%	109	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TFAM	7019	genome.wustl.edu	37	10	60145389	60145389	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003201.1	+1	provisional	p.R28*	0.023	98	0%	68	20.6%	16	6.2%	-	-	-	NULL
TET1	80312	genome.wustl.edu	37	10	70332938	70332938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_030625.2	+1	validated	p.K281N	0.978	83	0%	129	17.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
COL13A1	1305	genome.wustl.edu	37	10	71681683	71681683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001130103.1	+1	reviewed	p.G368W	1.000	134	0%	131	21.4%	4	0%	probably_damaging(1)	-	-	HMMPfam_Collagen
MAT1A	4143	genome.wustl.edu	37	10	82039972	82039972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000429.2	-1	reviewed	p.R169H	1.000	92	0%	66	36.4%	0	-	benign(0.303)	deleterious(0.03)	neutral(0.459)	HMMPfam_S-AdoMet_synt_M,superfamily_S-AdoMet_synt
PTEN	5728	genome.wustl.edu	37	10	89692802	89692802	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000371953	+1	known	p.P96A	1.000	453	0%	564	24.3%	12	8.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ENTPD7	57089	genome.wustl.edu	37	10	101458581	101458581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020354.3	+1	validated	p.R434H	0.797	84	0%	91	35.2%	5	60%	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_GDA1_CD39
PCGF6	84108	genome.wustl.edu	37	10	105110561	105110563	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001011663.1	-1	reviewed	p.E89in_frame_del	0.999:0.986:0.508	-	-	-	-	-	-	-	-	-	NULL
GSTO1	9446	genome.wustl.edu	37	10	106025846	106025846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004832.1	+1	reviewed	p.L157P	0.997	654	0%	734	23.8%	68	29.4%	benign(0.348)	deleterious(0.01)	deleterious(0.516)	HMMPfam_GST_C,superfamily_GST_C_like
MUC2	4583	genome.wustl.edu	37	11	1086086	1086086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002457.2	+1	reviewed	p.V976M	0.000	30	0%	35	34.3%	2	100%	possibly_damaging(0.948)	-	-	HMMPfam_VWD,HMMSmart_SM00216
DNHD1	144132	genome.wustl.edu	37	11	6593003	6593003	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_144666.2	+1	provisional	p.P4683	0.008	94	0%	68	29.4%	1	0%	-	-	-	HMMPfam_Dynein_heavy
SWAP70	23075	genome.wustl.edu	37	11	9771475	9771476	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015055.2	+1	validated	p.K576fs	0.738:0.782	-	-	-	-	-	-	-	-	-	NULL
USP47	55031	genome.wustl.edu	37	11	11974391	11974391	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_017944.3	+1	validated	p.S1161	1.000	366	0%	418	24.2%	27	33.3%	-	-	-	NULL
COPB1	1315	genome.wustl.edu	37	11	14512125	14512125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001144061.1	-1	reviewed	p.I198V	0.999	277	0%	376	25.8%	33	39.3%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
PHF21A	51317	genome.wustl.edu	37	11	45967528	45967528	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001101802.1	-1	validated	p.L438	1.000	358	0%	439	24.8%	3	0%	-	-	-	NULL
OR5M11	219487	genome.wustl.edu	37	11	56310547	56310547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001005245.1	-1	provisional	p.L63I	1.000	233	0%	301	22.6%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AK3P	81228	genome.wustl.edu	37	11	56738782	56738782	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000326876	+1	known	p.T86	0.000	126	0%	180	27.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CTNND1	1500	genome.wustl.edu	37	11	57577603	57577603	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001085458.1	+1	validated	p.R820*	1.000	153	0%	192	25.5%	25	4%	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
PRPF19	27339	genome.wustl.edu	37	11	60668143	60668143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014502.4	-1	validated	p.V247I	0.984	329	0%	307	21.8%	103	39.8%	benign(0.002)	tolerated(0.25)	neutral(0.037)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TRPT1	83707	genome.wustl.edu	37	11	63993014	63993014	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001033678.3	-1	validated	p.A38	1.000	77	0%	42	28.6%	29	44.8%	-	-	-	HMMPfam_PTS_2-RNA
CABP4	57010	genome.wustl.edu	37	11	67225137	67225137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_145200.3	+1	reviewed	p.R212H	0.931	161	0%	155	24.5%	4	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
DHCR7	1717	genome.wustl.edu	37	11	71146862	71146862	+	Silent	SNP	G	G	A	rs145901607	by1000genomes	TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001360.2	-1	reviewed	p.P329	0.031	18	0%	12	41.7%	26	38.4%	unknown(0)	-	-	HMMPfam_ERG4_ERG24
PDE2A	5138	genome.wustl.edu	37	11	72307680	72307680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002599.3	-1	validated	p.P149L	1.000	85	0%	94	25.5%	1	0%	unknown(0)	-	-	NULL
STARD10	10809	genome.wustl.edu	37	11	72470295	72470295	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006645.2	-1	validated	p.D113	0.994	173	0%	188	24.5%	197	44.6%	-	-	-	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
XRRA1	143570	genome.wustl.edu	37	11	74574105	74574105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000431210	-1	known	p.R28Q	0.000	78	0%	112	26.8%	0	-	-	-	-	NULL
C11orf30	56946	genome.wustl.edu	37	11	76253301	76253301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020193.3	+1	validated	p.R867W	1.000	296	0%	305	26.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C11orf73	51501	genome.wustl.edu	37	11	86055742	86055742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_016401.3	+1	validated	p.P173L	1.000	279	0%	312	52.6%	61	65.5%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_DUF775
ME3	10873	genome.wustl.edu	37	11	86157394	86157394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001014811.1	-1	reviewed	p.R506W	1.000	83	0%	87	29.9%	19	26.3%	possibly_damaging(0.792)	tolerated(0.09)	deleterious(0.593)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
ME3	10873	genome.wustl.edu	37	11	86198431	86198431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001014811.1	-1	reviewed	p.G253R	1.000	260	0%	169	24.9%	13	23%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_malic,superfamily_SSF53223
MRE11A	4361	genome.wustl.edu	37	11	94189501	94189501	+	Missense_Mutation	SNP	G	G	A	rs186333183	by1000genomes	TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005591.3	-1	reviewed	p.R502C	0.995	559	0%	625	26.7%	3	33.3%	benign(0.011)	deleterious(0.03)	neutral(0.365)	NULL
C11orf70	85016	genome.wustl.edu	37	11	101929675	101929675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032930.1	+1	predicted	p.W48L	1.000	95	0%	128	22.7%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MMP20	9313	genome.wustl.edu	37	11	102479681	102479681	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004771.3	-1	reviewed	p.I266	1.000	306	0%	367	21%	0	-	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
RAB39A	54734	genome.wustl.edu	37	11	107832867	107832867	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_017516.1	+1	provisional	p.E141	0.997	160	0%	231	27.7%	0	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRIK4	2900	genome.wustl.edu	37	11	120745948	120745948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014619.2	+1	reviewed	p.R387Q	1.000	156	0%	191	22%	0	-	benign(0.009)	tolerated(0.64)	neutral(0.004)	superfamily_SSF53822
SORL1	6653	genome.wustl.edu	37	11	121474944	121474944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003105.4	+1	reviewed	p.C1521Y	1.000	156	0%	103	22.3%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module
UBASH3B	84959	genome.wustl.edu	37	11	122650260	122650260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032873.4	+1	validated	p.R153H	1.000	148	0.7%	129	27.1%	3	0%	benign(0.047)	tolerated(0.21)	neutral(0.047)	NULL
MSANTD2	79684	genome.wustl.edu	37	11	124637722	124637722	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_024631.2	-1	validated	p.R292*	1.000	168	0%	180	27.8%	5	20%	-	-	-	NULL
DCP1B	196513	genome.wustl.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_152640.3	-1	validated	p.Q252H	0.000	83	2.4%	74	24.3%	7	42.8%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
TEAD4	7004	genome.wustl.edu	37	12	3120173	3120173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003213.2	+1	reviewed	p.R77Q	1.000	60	0%	56	30.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TEA,HMMSmart_TEA,PatternScan_TEA_1
CHD4	1108	genome.wustl.edu	37	12	6710104	6710104	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001273.2	-1	reviewed	p.R305	0.952	411	0%	360	25%	17	11.7%	-	-	-	NULL
PTMS	5763	genome.wustl.edu	37	12	6878779	6878781	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002824.4	+1	validated	p.K21in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Prothymosin
C3AR1	719	genome.wustl.edu	37	12	8212518	8212518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004054.2	-1	validated	p.W88*	1.000	213	0%	235	23%	8	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000246407	0	genome.wustl.edu	37	12	8384806	8384806	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000499592	-1	known	NULL	0.000	20	0%	46	28.3%	0	-	-	-	-	-
ETV6	2120	genome.wustl.edu	37	12	11992105	11992105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001987.4	+1	reviewed	p.D65E	1.000	118	0%	138	38.4%	4	25%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
C12orf36	283422	genome.wustl.edu	37	12	13526205	13526205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_182558.1	-1	provisional	p.K117T	0.000	418	0%	498	25.5%	0	-	unknown(0)	-	-	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27832470	27832470	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003622.2	+1	reviewed	p.S555C	0.921	129	0%	103	27.2%	4	25%	possibly_damaging(0.474)	deleterious(0.03)	deleterious(0.521)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30906403	30906403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001002259.1	-1	validated	p.R99W	0.993	298	0%	348	26.4%	2	50%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
MLL2	8085	genome.wustl.edu	37	12	49433506	49433506	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003482.3	-1	validated	e31+1	1.000	81	0%	71	32.4%	0	-	-	-	-	-
MLL2	8085	genome.wustl.edu	37	12	49433845	49433845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003482.3	-1	validated	p.P2570T	1.000	149	0%	165	25.5%	1	100%	unknown(0)	-	-	NULL
PRPF40B	25766	genome.wustl.edu	37	12	50031273	50031273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000395012	+1	known	p.M1T	0.445	114	0%	86	22.1%	13	30.7%	-	-	-	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50187645	50187645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001037806.3	-1	validated	p.R1044W	0.998	51	0%	42	19%	11	27.2%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ACVR1B	91	genome.wustl.edu	37	12	52377938	52377938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004302.3	+1	reviewed	p.V323M	0.979	177	0%	197	26.4%	10	0%	possibly_damaging(0.799)	deleterious(0.04)	deleterious(0.650)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ACVR1B	91	genome.wustl.edu	37	12	52387827	52387827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004302.3	+1	reviewed	p.R484L	1.000	95	0%	84	31%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PHC1P1	653441	genome.wustl.edu	37	12	55806811	55806811	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000326184	-1	known	p.A570	0.885	85	0%	55	18.2%	0	-	-	-	-	NULL
METTL21B	25895	genome.wustl.edu	37	12	58174313	58174314	+	Frame_Shift_Ins	INS	-	-	AGAGC	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015433.2	+1	validated	p.F191fs	0.102:0.220	-	-	-	-	-	-	-	-	-	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LRIG3	121227	genome.wustl.edu	37	12	59272737	59272737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_153377.3	-1	provisional	p.R651H	1.000	158	0%	111	28.8%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
USP15	9958	genome.wustl.edu	37	12	62777895	62777895	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006313.1	+1	provisional	p.R400*	0.988	493	0%	580	22.8%	2	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
KITLG	4254	genome.wustl.edu	37	12	88910138	88910138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000899.3	-1	reviewed	p.V165F	0.285	162	0%	161	23.6%	1	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_SCF,superfamily_4-helical cytokines
NR2C1	7181	genome.wustl.edu	37	12	95452262	95452262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003297.2	-1	reviewed	p.R123H	1.000	201	0%	264	28.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TCP11L2	255394	genome.wustl.edu	37	12	106708135	106708135	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_152772.1	+1	provisional	e2-1	1.000	178	0%	199	24.1%	0	-	-	-	-	-
ALKBH2	121642	genome.wustl.edu	37	12	109527846	109527846	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001001655.2	-1	validated	p.T149	0.345	150	0%	157	17.8%	28	32.1%	-	-	-	NULL
ALKBH2	121642	genome.wustl.edu	37	12	109527868	109527868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001001655.2	-1	validated	p.R142Q	1.000	169	0%	153	33.3%	26	34.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CCDC64	92558	genome.wustl.edu	37	12	120510399	120510399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_207311.2	+1	validated	p.V392I	1.000	50	0%	33	30.3%	3	33.3%	possibly_damaging(0.767)	tolerated(0.34)	neutral(0.307)	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129569187	129569187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_133448.2	-1	validated	p.V502M	0.020	231	0%	213	20.7%	0	-	benign(0.212)	tolerated(0.23)	neutral(0.062)	NULL
FREM2	341640	genome.wustl.edu	37	13	39263687	39263687	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_207361.4	+1	reviewed	p.R736*	1.000	96	0%	95	25.3%	0	-	-	-	-	NULL
STK24	8428	genome.wustl.edu	37	13	99127107	99127107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003576.3	-1	validated	p.E201K	1.000	150	0%	131	25.2%	47	42.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RNASE12	493901	genome.wustl.edu	37	14	21058856	21058856	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001024822.2	-1	validated	p.L9	0.723	318	0%	366	22.4%	0	-	-	-	-	NULL
SPTB	6710	genome.wustl.edu	37	14	65235770	65235770	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001024858.2	-1	reviewed	p.W2002G	0.043	223	0%	181	24.9%	0	-	possibly_damaging(0.618)	tolerated(0.06)	deleterious(0.537)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
RAB15	376267	genome.wustl.edu	37	14	65418360	65418361	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_198686.2	-1	validated	p.R69fs	0.956:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
GPHN	10243	genome.wustl.edu	37	14	67390936	67390936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020806.4	+1	reviewed	p.A252V	1.000	391	0%	362	24.3%	9	11.1%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ZFP36L1	677	genome.wustl.edu	37	14	69257025	69257025	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004926.2	-1	reviewed	p.S81fs	0.537	-	-	-	-	-	-	-	-	-	HMMPfam_Tis11B_N
YLPM1	56252	genome.wustl.edu	37	14	75248810	75248810	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_019589.2	+1	validated	p.P688	0.714	374	0.3%	342	24.6%	5	0%	-	-	-	NULL
PTPN21	11099	genome.wustl.edu	37	14	88945968	88945968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_007039.3	-1	reviewed	p.V603M	1.000	16	0%	13	38.5%	1	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
MOAP1	64112	genome.wustl.edu	37	14	93650536	93650536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_022151.4	-1	reviewed	p.R18W	0.220	129	0.8%	128	20.3%	15	46.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM181A	90050	genome.wustl.edu	37	14	94394613	94394613	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_138344.3	+1	predicted	p.S56	0.001	75	0%	53	24.5%	5	40%	-	-	-	NULL
WDR20	91833	genome.wustl.edu	37	14	102676134	102676134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_181291.1	+1	reviewed	p.E543K	1.000	151	0%	233	21%	8	37.5%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_WD40_like
IGHM	3507	genome.wustl.edu	37	14	106320535	106320535	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000390558	-1	known	p.P421L	0.978	125	0%	105	23.8%	2671	0%	-	-	-	HMMPfam_C1-set,superfamily_Immunoglobulin
MKRN3	7681	genome.wustl.edu	37	15	23812358	23812358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005664.3	+1	reviewed	p.R477W	0.118	268	0%	317	20.2%	0	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
ZNF770	54989	genome.wustl.edu	37	15	35274406	35274406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014106.2	-1	validated	p.F410L	0.661	119	0%	133	30.1%	4	75%	benign(0.01)	tolerated(0.27)	neutral(0.034)	NULL
ZNF770	54989	genome.wustl.edu	37	15	35275296	35275296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014106.2	-1	validated	p.V114I	0.942	184	0%	162	25.9%	1	100%	possibly_damaging(0.906)	tolerated(0.54)	neutral(0.367)	NULL
EHD4	30844	genome.wustl.edu	37	15	42193279	42193279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_139265.3	-1	validated	p.M397T	1.000	144	0%	154	26.6%	31	25.8%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	NULL
CAPN3	825	genome.wustl.edu	37	15	42693961	42693961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000070.2	+1	reviewed	p.R493W	1.000	95	0%	92	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
PPIP5K1	9677	genome.wustl.edu	37	15	43826979	43826979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001130858.1	-1	validated	p.A1399T	0.982	138	0%	118	23.7%	9	22.2%	benign(0.012)	deleterious(0.01)	neutral(0.406)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51763591	51763591	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015263.3	-1	validated	p.P2406	0.991	307	0%	284	27.1%	2	0%	-	-	-	superfamily_WD40 repeat-like
GCOM1	145781	genome.wustl.edu	37	15	57976677	57976677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001018100.2	+1	reviewed	p.M461T	0.000	166	0%	169	22.5%	5	0%	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
MAP2K1	5604	genome.wustl.edu	37	15	66781572	66781572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002755.3	+1	reviewed	p.S327T	1.000	195	0%	284	23.2%	26	30.7%	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MPI	4351	genome.wustl.edu	37	15	75185047	75185047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002435.1	+1	reviewed	p.D131N	1.000	97	0%	109	23.9%	41	29.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins,PatternScan_PMI_I_1
C15orf26	161502	genome.wustl.edu	37	15	81436089	81436089	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_173528.2	+1	predicted	p.S188	0.959	231	0%	223	21.5%	7	0%	-	-	-	NULL
TMC3	342125	genome.wustl.edu	37	15	81625552	81625552	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001080532.1	-1	provisional	p.S837	0.388	176	0%	224	29.5%	1	0%	-	-	-	NULL
ACAN	176	genome.wustl.edu	37	15	89391215	89391215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_013227.3	+1	reviewed	p.V560M	0.147	119	0%	133	26.3%	0	-	unknown(0)	tolerated(0.18)	-	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
CCDC154	645811	genome.wustl.edu	37	16	1488623	1488623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001143980.1	-1	provisional	p.A341V	0.385	48	0%	49	26.5%	1	0%	probably_damaging(0.996)	tolerated(0.94)	neutral(0.462)	NULL
MAPK8IP3	23162	genome.wustl.edu	37	16	1779192	1779192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015133.3	+1	reviewed	p.H165Y	1.000	169	0%	195	19.5%	3	33.3%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Jnk-SapK_ap_N
E4F1	1877	genome.wustl.edu	37	16	2283030	2283030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004424.3	+1	reviewed	p.A301V	0.003	65	0%	47	25.5%	17	35.2%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
SEC14L5	9717	genome.wustl.edu	37	16	5046404	5046404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014692.1	+1	validated	p.M241I	1.000	48	0%	39	43.6%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N
DNAH3	55567	genome.wustl.edu	37	16	20974932	20974932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_017539.1	-1	provisional	p.R3425H	1.000	172	0%	182	23.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
EEF2K	29904	genome.wustl.edu	37	16	22260105	22260105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_013302.3	+1	reviewed	p.D126G	0.907	132	0%	153	31.4%	7	57.1%	benign(0.052)	tolerated(0.28)	neutral(0.035)	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like
FHOD1	29109	genome.wustl.edu	37	16	67270542	67270542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_013241.2	-1	reviewed	p.G413C	0.000	86	0%	97	20.6%	6	0%	benign(0.187)	deleterious(0.01)	neutral(0.423)	NULL
DDX19A	55308	genome.wustl.edu	37	16	70404241	70404241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_018332.3	+1	provisional	p.R379Q	1.000	423	0%	555	21.1%	27	22.2%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	71025285	71025285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032821.2	-1	validated	p.D1267G	0.030	339	0%	404	16.8%	1	0%	benign(0.022)	tolerated(0.16)	neutral(0.060)	NULL
DHX38	9785	genome.wustl.edu	37	16	72133143	72133143	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014003.3	+1	reviewed	p.T308	0.149	117	0%	166	29.5%	11	45.4%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72831719	72831720	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006885.3	-1	reviewed	p.Q1621fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00451
CHST5	23563	genome.wustl.edu	37	16	75563169	75563169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_024533.3	-1	validated	p.A372T	0.959	15	0%	22	36.4%	2	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
EIF4A1	1973	genome.wustl.edu	37	17	7476181	7476181	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001416.2	+1	validated	p.R8*	1.000	144	0.7%	171	24%	186	19.8%	-	-	-	NULL
SOX15	6665	genome.wustl.edu	37	17	7492706	7492706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006942.1	-1	reviewed	p.P97S	1.000	65	0%	31	19.4%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CHD3	1107	genome.wustl.edu	37	17	7806722	7806722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001005271.2	+1	reviewed	p.R1269W	1.000	78	0%	80	21.2%	15	20%	probably_damaging(1)	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
USP43	124739	genome.wustl.edu	37	17	9590172	9590172	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_153210.3	+1	validated	p.Q433	0.997	175	0%	130	23.8%	2	50%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF287	57336	genome.wustl.edu	37	17	16456451	16456451	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020653.2	-1	validated	p.L335	1.000	125	0%	185	21.6%	0	-	-	-	-	NULL
PRPSAP2	5636	genome.wustl.edu	37	17	18832162	18832162	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002767.2	+1	reviewed	p.A281	0.839	285	0%	300	24%	53	35.8%	-	-	-	HMMPfam_Pribosyltran,superfamily_SSF53271
LGALS9	3965	genome.wustl.edu	37	17	25969343	25969343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_009587.2	+1	reviewed	p.G138D	0.474	391	0%	294	27.2%	66	1.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
TMEM98	26022	genome.wustl.edu	37	17	31266554	31266554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001033504.1	+1	validated	p.R158Q	1.000	271	0%	294	28.9%	76	7.8%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
GPR179	440435	genome.wustl.edu	37	17	36482864	36482864	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001004334.2	-1	validated	p.Q2196	0.934	224	0%	182	25.8%	0	-	-	-	-	NULL
CWC25	54883	genome.wustl.edu	37	17	36971274	36971274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_017748.3	-1	provisional	p.R90C	0.994	135	0%	118	29.7%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TOP2A	7153	genome.wustl.edu	37	17	38556273	38556273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001067.2	-1	reviewed	p.L1016S	0.978	175	0%	189	22.8%	7	57.1%	benign(0.004)	tolerated(0.47)	neutral(0.011)	HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase
KRT24	192666	genome.wustl.edu	37	17	38855720	38855720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_019016.2	-1	reviewed	p.R446H	1.000	304	0.7%	243	21.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Filament,PatternScan_IF
HDAC5	10014	genome.wustl.edu	37	17	42157798	42157798	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001015053.1	-1	reviewed	p.I933	0.994	64	0%	45	26.7%	45	24.4%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
GRN	2896	genome.wustl.edu	37	17	42429885	42429885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002087.2	+1	reviewed	p.N530K	0.535	76	0%	92	16.3%	940	29.5%	possibly_damaging(0.916)	tolerated(0.48)	neutral(0.378)	HMMSmart_SM00277,superfamily_Granulin repeat
DBF4B	80174	genome.wustl.edu	37	17	42818794	42818794	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_145663.1	+1	validated	p.T268	0.000	220	0%	270	23.3%	3	0%	-	-	-	NULL
ACBD4	79777	genome.wustl.edu	37	17	43213875	43213875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001135704.1	+1	reviewed	p.R33C	1.000	62	0%	32	43.8%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ACBP,superfamily_ACBP
SNF8	11267	genome.wustl.edu	37	17	47009026	47009026	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_007241.2	-1	provisional	p.T206	0.019	236	0.4%	234	25.6%	110	3.6%	-	-	-	"HMMPfam_EAP30,superfamily_""Winged helix"" DNA-binding domain"
MRC2	9902	genome.wustl.edu	37	17	60755963	60755963	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006039.3	+1	validated	p.Y717	0.379	32	0%	32	28.1%	6	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
SCN4A	6329	genome.wustl.edu	37	17	62049141	62049141	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000334.4	-1	reviewed	p.D184	0.062	81	0%	79	24.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GALK1	2584	genome.wustl.edu	37	17	73758963	73758963	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000154.1	-1	reviewed	p.S205	0.996	53	0%	28	35.7%	27	14.8%	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold
RNF213	57674	genome.wustl.edu	37	17	78343365	78343365	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000508628	+1	known	p.V4073	0.007	131	0%	107	26.2%	7	42.8%	-	-	-	NULL
HGS	9146	genome.wustl.edu	37	17	79663956	79663956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004712.3	+1	provisional	p.M604V	0.999	15	0.000	8	0.500	58	24.1%	benign(0.012)	tolerated(0.06)	neutral(0.323)	NULL
TBCD	6904	genome.wustl.edu	37	17	80881552	80881552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005993.4	+1	reviewed	p.A735T	0.842	117	0%	111	27.9%	39	30.7%	possibly_damaging(0.765)	tolerated(0.55)	neutral(0.291)	superfamily_ARM repeat
ZFP161	7541	genome.wustl.edu	37	18	5291608	5291608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001143823.1	-1	validated	p.A200V	1.000	145	0%	117	27.4%	9	11.1%	possibly_damaging(0.799)	deleterious(0)	deleterious(0.746)	NULL
MC5R	4161	genome.wustl.edu	37	18	13826462	13826462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005913.1	+1	provisional	p.S233N	1.000	248	0%	235	28.9%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ASXL3	80816	genome.wustl.edu	37	18	31314300	31314300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_030632.1	+1	provisional	p.R335W	1.000	210	0.5%	246	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RTTN	25914	genome.wustl.edu	37	18	67806869	67806869	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_173630.3	-1	validated	p.S918	0.560	133	0%	153	19.6%	1	100%	-	-	-	NULL
NETO1	81832	genome.wustl.edu	37	18	70417389	70417389	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_138966.2	-1	reviewed	p.S483	0.003	493	0.4%	583	23.7%	0	-	-	-	-	NULL
NFATC1	4772	genome.wustl.edu	37	18	77227530	77227530	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_172387.1	+1	reviewed	p.N667	0.999	128	0.8%	136	20.6%	4	0%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
KLF16	83855	genome.wustl.edu	37	19	1863074	1863074	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_031918.3	-1	validated	p.S141	0.896	34	0%	37	40.5%	13	15.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DOT1L	84444	genome.wustl.edu	37	19	2226432	2226432	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032482.2	+1	validated	p.D1304	0.000	13	0.000	7	0.571	10	20%	-	-	-	NULL
CREB3L3	84699	genome.wustl.edu	37	19	4159700	4159700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032607.1	+1	provisional	p.P166L	0.000	80	1.3%	77	36.4%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
GTF2F1	2962	genome.wustl.edu	37	19	6381791	6381793	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002096.2	-1	validated	p.K251in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TFIIF_alpha,superfamily_Rap30/74 interaction domains
FBN3	84467	genome.wustl.edu	37	19	8203436	8203436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032447.3	-1	reviewed	p.G293D	1.000	23	0%	19	36.8%	0	-	possibly_damaging(0.891)	deleterious(0.01)	deleterious(0.756)	superfamily_TB module/8-cys domain
HNRNPM	4670	genome.wustl.edu	37	19	8551128	8551128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005968.3	+1	validated	p.R606C	1.000	44	0%	33	18.2%	169	33.7%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
ADAMTS10	81794	genome.wustl.edu	37	19	8662205	8662205	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000393912	-1	known	p.C23	1.000	180	0%	226	26.5%	1	0%	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11347142	11347142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_020812.2	-1	validated	p.R758W	1.000	60	0%	52	25%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF439	90594	genome.wustl.edu	37	19	11979067	11979067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_152262.2	+1	provisional	p.G395S	0.000	163	0%	215	27%	5	40%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAN2B1	4125	genome.wustl.edu	37	19	12760770	12760770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000528.3	-1	reviewed	p.R742C	0.000	377	0.5%	339	25.1%	117	18.8%	possibly_damaging(0.836)	deleterious(0.02)	deleterious(0.703)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
TNPO2	30000	genome.wustl.edu	37	19	12812635	12812635	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001136196.1	-1	validated	p.N814	0.651	90	0%	68	14.7%	28	39.2%	-	-	-	superfamily_ARM repeat
RFX1	5989	genome.wustl.edu	37	19	14074059	14074059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002918.4	-1	validated	p.R867C	1.000	61	0%	60	20%	36	30.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CYP4F11	57834	genome.wustl.edu	37	19	16034637	16034637	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001128932.1	-1	reviewed	p.V301	0.943	202	0%	162	17.9%	4	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CPAMD8	27151	genome.wustl.edu	37	19	17081720	17081720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015692.2	-1	validated	p.P779S	0.028	20	0%	25	20%	5	20%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
NR2F6	2063	genome.wustl.edu	37	19	17351567	17351567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005234.3	-1	validated	p.R96C	1.000	165	0%	146	26%	57	29.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
RAB3A	5864	genome.wustl.edu	37	19	18313485	18313485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002866.4	-1	validated	p.M22I	1.000	184	0.5%	175	22.3%	6	66.6%	benign(0.13)	deleterious(0.03)	neutral(0.376)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP89	84902	genome.wustl.edu	37	19	33406281	33406281	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032816.3	-1	validated	p.A509	0.000	323	0%	359	24.8%	6	16.6%	-	-	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40383910	40383910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003890.2	-1	validated	p.R3234S	0.020	255	0%	161	7.5%	42	0%	unknown(0)	tolerated(0.57)	-	NULL
IRF2BP1	26145	genome.wustl.edu	37	19	46388270	46388270	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015649.1	-1	provisional	p.R255*	0.988	35	0%	16	31.2%	40	40%	-	-	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46807261	46807261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_152795.2	+1	reviewed	p.R45C	1.000	12	0%	10	60%	1	0%	probably_damaging(0.973)	tolerated(0.05)	deleterious(0.760)	HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
CRX	1406	genome.wustl.edu	37	19	48342686	48342686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_000554.4	+1	reviewed	p.A121V	0.470	33	0%	31	16.1%	0	-	benign(0.075)	deleterious(0.02)	neutral(0.388)	NULL
PRMT1	3276	genome.wustl.edu	37	19	50189971	50189971	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001536.3	+1	validated	p.N340	0.764	24	0%	38	21.1%	397	40%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LENG8	114823	genome.wustl.edu	37	19	54963296	54963296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_052925.2	+1	validated	p.G22V	0.996	113	0%	108	29.6%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF586	54807	genome.wustl.edu	37	19	58290292	58290292	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_017652.2	+1	validated	p.R113	0.018	183	0%	233	21.5%	5	20%	-	-	-	superfamily_SSF57667
FASTKD5	60493	genome.wustl.edu	37	20	3128122	3128122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_021826.4	-1	validated	p.R532H	0.990	81	1.2%	58	22.4%	18	27.7%	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	HMMPfam_FAST_2
PLCB1	23236	genome.wustl.edu	37	20	8770858	8770858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_015192.2	+1	reviewed	p.V1125L	0.060	177	0%	287	27.2%	6	0%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_PLC-beta_C
CBFA2T2	9139	genome.wustl.edu	37	20	32210951	32210951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005093.3	+1	reviewed	p.L190M	1.000	65	0%	59	22%	2	50%	benign(0.052)	deleterious(0.03)	neutral(0.367)	HMMPfam_TAFH,HMMSmart_SM00549
E2F1	1869	genome.wustl.edu	37	20	32267636	32267636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005225.2	-1	reviewed	p.R166H	1.000	203	0%	165	21.2%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
CDH4	1002	genome.wustl.edu	37	20	60509156	60509156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001794.2	+1	reviewed	p.H808Y	0.988	15	0.000	8	0.625	0	-	possibly_damaging(0.617)	tolerated(0.12)	deleterious(0.475)	HMMPfam_Cadherin_C
SLCO4A1	28231	genome.wustl.edu	37	20	61290061	61290061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_016354.3	+1	validated	p.A277T	1.000	56	0%	40	35%	2	50%	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLC17A9	63910	genome.wustl.edu	37	20	61596999	61596999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_022082.3	+1	validated	p.C328Y	1.000	123	0%	84	19%	2	0%	benign(0.347)	tolerated(0.06)	neutral(0.432)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
KCNQ2	3785	genome.wustl.edu	37	20	62103608	62103608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_172107.2	-1	reviewed	p.R70H	1.000	13	0.000	8	0.625	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DGCR2	9993	genome.wustl.edu	37	22	19052396	19052396	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005137.2	-1	reviewed	p.Q171	1.000	79	0%	57	19.3%	32	25%	-	-	-	HMMSmart_CLECT,superfamily_C-type_lectin_fold
MYO18B	84700	genome.wustl.edu	37	22	26166060	26166060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000418374	+1	known	p.R12H	0.000	431	0%	580	21%	0	-	-	-	-	NULL
ZNRF3	84133	genome.wustl.edu	37	22	29445671	29445671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_032173.2	+1	validated	p.P401L	0.121	22	0%	26	26.9%	0	-	possibly_damaging(0.889)	tolerated(0.1)	deleterious(0.636)	NULL
PES1	23481	genome.wustl.edu	37	22	30976111	30976111	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014303.2	-1	reviewed	p.Y366	0.010	176	0%	201	20.9%	82	29.2%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
MCM5	4174	genome.wustl.edu	37	22	35815947	35815947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_006739.3	+1	reviewed	p.G592R	1.000	32	0%	24	16.7%	55	38.1%	possibly_damaging(0.877)	tolerated(0.53)	neutral(0.349)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIOBP	11078	genome.wustl.edu	37	22	38120883	38120883	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001039141.2	+1	reviewed	p.R774*	0.016	660	0%	814	27.9%	1	0%	-	-	-	NULL
CSNK1E	1454	genome.wustl.edu	37	22	38696782	38696784	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001894.4	-1	reviewed	p.N170in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SREBF2	6721	genome.wustl.edu	37	22	42289229	42289229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004599.2	+1	reviewed	p.R773W	1.000	125	0%	101	20.8%	30	33.3%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
TCF20	6942	genome.wustl.edu	37	22	42564666	42564666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005650.1	-1	reviewed	p.R1959Q	1.000	116	0.9%	111	19.8%	8	25%	benign(0.018)	deleterious(0)	neutral(0.445)	NULL
PLXNB2	23654	genome.wustl.edu	37	22	50714390	50714390	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_012401.2	-1	validated	p.A1780	0.114	105	0%	143	27.3%	504	40.6%	-	-	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
GTPBP6	8225	genome.wustl.edu	37	X	221828	221828	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000400701	-1	known	p.R259C	0.948	412	0%	361	23.8%	60	25%	-	-	-	NULL
VCX3B	425054	genome.wustl.edu	37	X	8434008	8434008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001001888.2	+1	reviewed	p.E109K	0.001	449	0%	422	15.6%	0	-	unknown(0)	tolerated(0.83)	-	NULL
SMS	6611	genome.wustl.edu	37	X	22010810	22010810	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_004595.2	+1	reviewed	p.C347	1.000	572	0%	599	22.9%	80	0%	-	-	-	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LOC389842	389842	genome.wustl.edu	37	X	25664287	25664287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	XM_372200.7	-1	model	p.A53V	1.000	87	0%	83	18.1%	0	-	-	-	-	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
LOC389842	389842	genome.wustl.edu	37	X	25664376	25664376	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	XM_372200.7	-1	model	p.H23	1.000	99	0%	139	12.9%	0	-	-	-	-	superfamily_PH domain-like
BRWD3	254065	genome.wustl.edu	37	X	79960225	79960225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_153252.4	-1	reviewed	p.L891F	0.917	673	0%	850	23.2%	0	-	benign(0.08)	tolerated(0.07)	neutral(0.325)	NULL
NRK	203447	genome.wustl.edu	37	X	105150501	105150501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_198465.2	+1	validated	p.R314W	0.304	312	0%	365	23%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like)
MIR1911	100302222	genome.wustl.edu	37	X	113997777	113997777	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	ENST00000410783	+1	known	NULL	0.999	211	0%	154	20.8%	0	-	-	-	-	-
ODZ1	10178	genome.wustl.edu	37	X	124029866	124029866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_014253.3	-1	reviewed	p.D148N	1.000	385	0.3%	428	24.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ten_N
XPNPEP2	7512	genome.wustl.edu	37	X	128888464	128888464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_003399.5	+1	reviewed	p.A375V	0.997	153	0%	151	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
SOX3	6658	genome.wustl.edu	37	X	139586802	139586802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_005634.2	-1	reviewed	p.P142T	1.000	54	0%	37	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
SLITRK4	139065	genome.wustl.edu	37	X	142716505	142716505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_173078.3	-1	reviewed	p.R807M	1.000	347	0%	409	24.2%	0	-	possibly_damaging(0.865)	deleterious(0.03)	deleterious(0.700)	NULL
TREX2	11219	genome.wustl.edu	37	X	152710736	152710736	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_080701.3	-1	reviewed	p.L51	0.000	64	0%	73	17.8%	0	-	-	-	-	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T
FLNA	2316	genome.wustl.edu	37	X	153582585	153582585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_001110556.1	-1	reviewed	p.R1831W	1.000	62	0%	48	29.2%	159	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
IL9R	3581	genome.wustl.edu	37	X	155239484	155239484	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UA-01A-11D-A122-09	TCGA-BS-A0UA-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6c1aa708-0552-4485-b859-4ade5f5a8431	d62bfc2a-9986-483c-8743-1fc609df0687	NM_002186.2	+1	reviewed	p.W326G	0.505	32	0%	31	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
