Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_006015.4	+1	reviewed	p.R1989*	1.000	180	0%	129	32.6%	78	34.6%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106861	27106861	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_006015.4	+1	reviewed	p.R2158*	1.000	64	0%	44	29.5%	62	22.5%	-	-	-	NULL
GALNT5	11227	genome.wustl.edu	37	2	158157422	158157422	+	Nonsense_Mutation	SNP	C	C	T	rs187784514	by1000genomes	TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_014568.1	+1	provisional	p.R784*	1.000	238	0%	71	42.3%	0	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
C3orf20	84077	genome.wustl.edu	37	3	14768528	14768528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_032137.4	+1	validated	p.A563T	0.865	145	0%	38	42.1%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T	rs121913400	byCluster	TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001098209.1	+1	reviewed	p.S33F	1.000	106	0%	22	40.9%	209	33.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119120905	119120905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_020754.2	+1	reviewed	p.R436W	1.000	64	0%	50	18%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_006218.2	+1	reviewed	p.E542K	1.000	165	0%	44	29.5%	4	50%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
MCF2L2	23101	genome.wustl.edu	37	3	183041107	183041107	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_015078.2	-1	validated	p.H173	0.981	180	0%	66	28.8%	0	-	-	-	-	HMMSmart_SM00516
SLC34A2	10568	genome.wustl.edu	37	4	25678015	25678015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_006424.2	+1	reviewed	p.R573*	0.086	102	0%	123	43.1%	167	50.2%	-	-	-	NULL
NIPBL	25836	genome.wustl.edu	37	5	37022190	37022190	+	Missense_Mutation	SNP	G	G	A	rs80358380		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_133433.3	+1	reviewed	p.R1789Q	1.000	351	0%	156	32.1%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PCDHGA3	56112	genome.wustl.edu	37	5	140723784	140723784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_018916.3	+1	reviewed	p.R62C	0.967	61	0%	82	26.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ZNF879	345462	genome.wustl.edu	37	5	178459851	178459851	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001136116.1	+1	provisional	p.S301*	0.001	109	0%	58	19%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C6orf201	404220	genome.wustl.edu	37	6	4087904	4087904	+	Missense_Mutation	SNP	C	C	T	rs148130670	by1000genomes	TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001085401.1	+1	validated	p.P10L	0.905	176	0.6%	224	22.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
PCLO	27445	genome.wustl.edu	37	7	82585187	82585187	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_033026.5	-1	validated	p.D1694	0.995	295	0%	53	39.6%	0	-	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110461608	110461608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_177531.4	+1	validated	p.G2023R	1.000	187	0%	55	56.4%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
TATDN1	83940	genome.wustl.edu	37	8	125520905	125520905	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_032026.3	-1	validated	p.L138	1.000	156	0%	72	23.6%	49	28.5%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_TatD_DNase,superfamily_Metallo-dependent hydrolases
KDM4C	23081	genome.wustl.edu	37	9	7128116	7128116	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_015061.3	+1	reviewed	p.T887	0.983	210	0.5%	51	35.3%	13	38.4%	-	-	-	HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT
GNE	10020	genome.wustl.edu	37	9	36222849	36222849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001128227.1	-1	reviewed	p.C551G	1.000	162	0%	83	38.6%	13	53.8%	benign(0.085)	deleterious(0)	neutral(0.451)	HMMPfam_ROK,superfamily_SSF53067
OLFML2A	169611	genome.wustl.edu	37	9	127572207	127572207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_182487.2	+1	validated	p.R492Q	1.000	49	0%	60	25%	14	0%	possibly_damaging(0.853)	tolerated(0.09)	deleterious(0.625)	HMMPfam_OLF,HMMSmart_SM00284
PTEN	5728	genome.wustl.edu	37	10	89720857	89720857	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	ENST00000371953	+1	known	p.Y336*	0.996	104	0%	30	86.7%	67	88%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
CCND1	595	genome.wustl.edu	37	11	69466021	69466021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_053056.2	+1	reviewed	p.P287S	1.000	21	0%	16	31.2%	48	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBTB16	7704	genome.wustl.edu	37	11	114121229	114121229	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001018011.1	+1	reviewed	p.P658	0.993	36	0%	56	28.6%	3	0%	-	-	-	NULL
ANO2	57101	genome.wustl.edu	37	12	5853322	5853322	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_020373.2	-1	validated	e12+1	1.000	129	0%	39	30.8%	0	-	-	-	-	-
KRT85	3891	genome.wustl.edu	37	12	52757081	52757081	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_002283.3	-1	reviewed	p.D300	0.833	121	0%	171	40.9%	0	-	-	-	-	HMMPfam_Filament
FLT1	2321	genome.wustl.edu	37	13	29008333	29008333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_002019.4	-1	reviewed	p.D180N	0.996	211	0%	62	41.9%	9	0%	benign(0.19)	deleterious(0)	neutral(0.463)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
AP1G2	8906	genome.wustl.edu	37	14	24035308	24035311	+	Frame_Shift_Del	DEL	GGGA	GGGA	-	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	GGGA	GGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_003917.2	-1	reviewed	p.L177fs	1.000:1.000:0.999:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
GDE1	51573	genome.wustl.edu	37	16	19514911	19514911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_016641.3	-1	validated	p.G293R	1.000	305	0%	72	29.2%	119	50.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
LOC100288822	100288822	genome.wustl.edu	37	17	4693384	4693384	+	Missense_Mutation	SNP	T	T	C	rs150754782	by1000genomes	TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	XM_002343474.1	-1	model	p.T122A	0.944	1	0.000	4	1.000	0	-	-	-	-	NULL
KDM6B	23135	genome.wustl.edu	37	17	7750178	7750186	+	In_Frame_Del	DEL	ACCACCACC	ACCACCACC	-	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	ACCACCACC	ACCACCACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001080424.1	+1	provisional	p.PPP255in_frame_del	0.528:0.804:0.807:0.775:0.765:0.746:0.002:0.005:0.007	-	-	-	-	-	-	-	-	-	NULL
PIK3R5	23533	genome.wustl.edu	37	17	8784028	8784028	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001142633.1	-1	validated	p.P857	0.000	173	0%	175	33.1%	2	0%	-	-	-	HMMPfam_PI3K_1B_p101
GPR179	440435	genome.wustl.edu	37	17	36485646	36485646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001004334.2	-1	validated	p.T1269M	0.665	102	0%	122	11.5%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
KRT23	25984	genome.wustl.edu	37	17	39079247	39079247	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_015515.3	-1	reviewed	p.H421	0.000	269	0%	49	34.7%	281	42.3%	-	-	-	NULL
KRT17	3872	genome.wustl.edu	37	17	39777998	39777998	+	Silent	SNP	G	G	A	rs147053246	by1000genomes	TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_000422.2	-1	reviewed	p.N227	0.000	108	0%	158	43.7%	647	49.3%	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
NOG	9241	genome.wustl.edu	37	17	54671998	54671999	+	In_Frame_Ins	INS	-	-	AAGAAGCTG	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_005450.4	+1	reviewed	p.141in_frame_insKKL	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Noggin,superfamily_SSF57501
KLC3	147700	genome.wustl.edu	37	19	45853784	45853784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_177417.2	+1	reviewed	p.T416I	0.002	112	0%	172	45.9%	8	37.5%	benign(0.012)	tolerated(0.09)	neutral(0.297)	NULL
PPP5C	5536	genome.wustl.edu	37	19	46850394	46850394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_006247.2	+1	provisional	p.P14H	0.995	36	0%	57	42.1%	35	45.7%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
NLRP5	126206	genome.wustl.edu	37	19	56538394	56538394	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_153447.4	+1	reviewed	p.T265	0.000	193	0%	154	36.4%	0	-	-	-	-	superfamily_SSF52540
CSRP2BP	57325	genome.wustl.edu	37	20	18125926	18125926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_020536.4	+1	reviewed	p.R103	0.998	221	0%	119	31.9%	17	17.6%	-	-	-	NULL
KRTAP19-8	728299	genome.wustl.edu	37	21	32410597	32410597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_001099219.1	-1	provisional	p.G56R	0.000	223	0%	51	35.3%	0	-	unknown(0)	-	-	NULL
SIK1	150094	genome.wustl.edu	37	21	44836669	44836669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_173354.3	-1	validated	p.E769K	1.000	20	0%	22	72.7%	19	52.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SMTN	6525	genome.wustl.edu	37	22	31494660	31494660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_134270.1	+1	reviewed	p.D723N	1.000	14	0%	34	41.2%	67	29.8%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
BAIAP2L2	80115	genome.wustl.edu	37	22	38482353	38482394	+	Frame_Shift_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	rs66500630	byCluster;by1000genomes	TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	ENST00000402500	-1	known	p.T441fs	0.064	-	-	-	-	-	-	-	-	-	NULL
CRELD2	79174	genome.wustl.edu	37	22	50319097	50319098	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A0ZU-01A-11D-A10M-09	TCGA-D1-A0ZU-10A-01D-A10M-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdca76c6-ac2f-4862-a7cf-839e6b790661	830e9e36-b66e-4799-9cbc-4d9e667cdd59	NM_024324.3	+1	validated	p.V302fs	0.665:0.687	-	-	-	-	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMSmart_SM00261,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA
