Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MIB2	142678	genome.wustl.edu	37	1	1558903	1558903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_080875.2	+1	validated	p.G82D	1.000	15	0%	35	40%	6	83.3%	benign(0.346)	tolerated(0.26)	neutral(0.144)	HMMPfam_MIB_HERC2
NADK	65220	genome.wustl.edu	37	1	1685737	1685737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_023018.3	-1	validated	p.T310M	0.991	37	0%	76	34.2%	205	40%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)
KIAA1751	85452	genome.wustl.edu	37	1	1905554	1905554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080484.1	-1	predicted	p.G195V	0.000	37	0%	57	33.3%	4	50%	possibly_damaging(0.838)	tolerated(0.14)	deleterious(0.570)	NULL
GPR153	387509	genome.wustl.edu	37	1	6314845	6314845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_207370.2	-1	validated	p.P41S	1.000	45	0%	91	36.3%	4	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
PLEKHG5	57449	genome.wustl.edu	37	1	6535161	6535161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198681.2	-1	reviewed	p.L160P	1.000	122	0%	189	30.7%	9	44.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TAS1R1	80835	genome.wustl.edu	37	1	6631229	6631229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_138697.3	+1	reviewed	p.R151H	0.000	54	0%	70	34.3%	0	-	benign(0.004)	tolerated(0.55)	neutral(0.007)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
RERE	473	genome.wustl.edu	37	1	8422885	8422885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001042681.1	-1	reviewed	p.G587V	1.000	141	0%	156	43.6%	33	36.3%	unknown(0)	deleterious(0)	-	HMMPfam_Atrophin-1
PTCHD2	57540	genome.wustl.edu	37	1	11561798	11561798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020780.1	+1	validated	p.R250H	0.834	5	0.000	16	0.312	0	-	possibly_damaging(0.484)	deleterious(0.03)	deleterious(0.525)	HMMPfam_Patched
NPPA	4878	genome.wustl.edu	37	1	11907726	11907726	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006172.3	-1	reviewed	p.T6S	0.106	197	0%	235	10.2%	3	0%	unknown(0)	tolerated(0.85)	-	NULL
IGSF21	84966	genome.wustl.edu	37	1	18703361	18703361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032880.3	+1	validated	p.A390V	0.134	36	0%	66	13.6%	1	0%	benign(0.049)	tolerated(0.05)	neutral(0.348)	HMMSmart_IG,superfamily_SSF48726
ZBTB40	9923	genome.wustl.edu	37	1	22838599	22838599	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001083621.1	+1	validated	p.L811	1.000	81	0%	101	41.6%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPHB2	2048	genome.wustl.edu	37	1	23240243	23240243	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000400191	+1	known	p.D1016	0.007	160	0.6%	183	35%	0	-	-	-	-	NULL
FCN3	8547	genome.wustl.edu	37	1	27700876	27700876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003665.2	-1	reviewed	p.P53H	1.000	73	0%	105	36.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GJB4	127534	genome.wustl.edu	37	1	35226978	35226978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_153212.2	+1	reviewed	p.E41D	1.000	195	0%	215	30.7%	5	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Connexin
CTPS	1503	genome.wustl.edu	37	1	41467863	41467863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001905.2	+1	validated	p.R376*	1.000	365	0%	364	36%	6	0%	-	-	-	HMMPfam_GATase,superfamily_SSF52317
KDM4A	9682	genome.wustl.edu	37	1	44159763	44159763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014663.2	+1	reviewed	p.R825H	1.000	155	0%	184	14.1%	25	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
POMGNT1	55624	genome.wustl.edu	37	1	46663514	46663514	+	RNA	SNP	A	A	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NR_024332.1	-1	reviewed	NULL	0.355	45	0%	45	33.3%	2	0%	-	-	-	-
BARHL2	343472	genome.wustl.edu	37	1	91182159	91182159	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020063.1	-1	validated	p.R198	1.000	138	0%	134	36.6%	0	-	-	-	-	NULL
FRRS1	391059	genome.wustl.edu	37	1	100174538	100174538	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001013660.2	-1	validated	p.I599	0.004	165	0%	165	33.3%	2	0%	-	-	-	NULL
DBT	1629	genome.wustl.edu	37	1	100706417	100706417	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001918.2	-1	reviewed	p.T25	0.000	155	0%	137	28.5%	6	50%	-	-	-	NULL
DPH5	51611	genome.wustl.edu	37	1	101467037	101467037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001077394.1	-1	reviewed	p.T159I	1.000	310	0%	247	30.4%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TP_methylase,superfamily_Tetrapyrrole methylase
AMY2B	280	genome.wustl.edu	37	1	104122083	104122083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020978.3	+1	reviewed	p.E499D	0.999	197	0%	173	38.7%	1	100%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_Alpha-amylase_C,HMMSmart_SM00632,superfamily_Glycosyl hydrolase domain
GNAI3	2773	genome.wustl.edu	37	1	110128958	110128958	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006496.2	+1	validated	p.D237	1.000	234	0%	192	41.7%	48	43.7%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYCP1	6847	genome.wustl.edu	37	1	115537595	115537595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003176.2	+1	validated	p.M962I	0.999	47	0%	56	48.2%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
HMGCS2	3158	genome.wustl.edu	37	1	120302487	120302487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005518.3	-1	reviewed	p.G229W	1.000	73	0%	58	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
NOTCH2NL	388677	genome.wustl.edu	37	1	145273386	145273386	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_203458.3	+1	validated	p.G80	1.000	753	0.1%	762	11.7%	263	54.7%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
CERS2	29956	genome.wustl.edu	37	1	150941418	150941418	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022075.3	-1	reviewed	p.L50R	1.000	199	0%	235	30.6%	101	58.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TDRD10	126668	genome.wustl.edu	37	1	154516586	154516586	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001098475.1	+1	validated	p.E217	0.885	158	0%	193	40.4%	1	0%	-	-	-	HMMPfam_TUDOR
GBAP1	2630	genome.wustl.edu	37	1	155185404	155185404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000368374	-1	known	p.A233V	0.999	81	0%	101	33.7%	4	25%	benign(0.004)	tolerated(0.51)	neutral(0.009)	HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases
GON4L	54856	genome.wustl.edu	37	1	155736403	155736403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001037533.1	-1	validated	p.R954Q	0.000	304	0.3%	324	35.2%	3	0%	benign(0)	tolerated(0.95)	-	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156518522	156518522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178229.4	-1	validated	p.A615V	1.000	63	0%	78	28.2%	4	75%	benign(0.043)	tolerated(0.28)	neutral(0.034)	NULL
NTRK1	4914	genome.wustl.edu	37	1	156845383	156845383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002529.3	+1	reviewed	p.L476M	0.999	113	0%	119	39.5%	0	-	benign(0.311)	tolerated(0.21)	neutral(0.141)	NULL
IFI16	3428	genome.wustl.edu	37	1	158988080	158988080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005531.2	+1	reviewed	p.P204Q	0.002	183	0%	173	35.3%	5	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_HIN
TAGLN2	8407	genome.wustl.edu	37	1	159890296	159890296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003564.1	-1	reviewed	p.A2T	1.000	96	0%	114	21.1%	884	43.4%	possibly_damaging(0.854)	deleterious(0)	deleterious(0.774)	superfamily_Calponin-homology
FAM78B	149297	genome.wustl.edu	37	1	166135431	166135431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001017961.3	-1	validated	p.V19M	1.000	55	0%	80	33.8%	1	0%	benign(0.059)	tolerated(0.14)	neutral(0.254)	NULL
DCAF6	55827	genome.wustl.edu	37	1	168037681	168037681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018442.2	+1	validated	p.S853L	0.997	172	0%	209	29.2%	22	45.4%	possibly_damaging(0.649)	deleterious(0.03)	deleterious(0.593)	NULL
F5	2153	genome.wustl.edu	37	1	169510415	169510416	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000130.4	-1	reviewed	p.P1305fs	0.096:0.010	-	-	-	-	-	-	-	-	-	HMMPfam_LSPR
F5	2153	genome.wustl.edu	37	1	169528428	169528428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000130.4	-1	reviewed	p.M231I	1.000	176	0.6%	172	36.6%	0	-	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	superfamily_Cupredoxins
FAM163A	148753	genome.wustl.edu	37	1	179782263	179782263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173509.2	+1	provisional	p.G11R	1.000	187	0%	184	33.7%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
FAM163A	148753	genome.wustl.edu	37	1	179783105	179783105	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173509.2	+1	provisional	p.C95	1.000	29	0%	32	28.1%	0	-	-	-	-	NULL
SMG7	9887	genome.wustl.edu	37	1	183515450	183515450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173156.2	+1	validated	p.P907H	0.981	135	0%	161	31.1%	9	44.4%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196577422	196577422	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198503.2	-1	validated	p.S6	1.000	324	0%	325	29.5%	0	-	-	-	-	NULL
CFHR4	10877	genome.wustl.edu	37	1	196881925	196881925	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006684.2	+1	validated	p.S104	0.000	39	0%	26	15.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
NFASC	23114	genome.wustl.edu	37	1	204985520	204985520	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000367173	+1	known	p.W993*	1.000	284	0.4%	323	36.2%	2	50%	-	-	-	NULL
DIEXF	27042	genome.wustl.edu	37	1	210012391	210012391	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000457820	+1	known	p.P81L	0.234	310	0%	333	30.3%	3	66.6%	-	-	-	HMMPfam_DUF1253
PROX1	5629	genome.wustl.edu	37	1	214170907	214170907	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002763.3	+1	provisional	p.P343	0.011	160	0.6%	192	38.5%	0	-	-	-	-	HMMPfam_Prox1
CENPF	1063	genome.wustl.edu	37	1	214816385	214816385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016343.3	+1	reviewed	p.E1568D	0.022	59	0%	54	40.7%	2	50%	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
WNT9A	7483	genome.wustl.edu	37	1	228112049	228112049	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003395.2	-1	validated	p.H135	0.926	70	0%	104	42.3%	19	52.6%	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
PCNXL2	80003	genome.wustl.edu	37	1	233121957	233121957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014801.3	-1	provisional	p.A2041T	0.888	35	0%	49	49%	7	42.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
NID1	4811	genome.wustl.edu	37	1	236205358	236205358	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002508.2	-1	reviewed	p.P329	0.002	86	0%	116	11.2%	3	0%	-	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240256392	240256392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020066.4	+1	validated	p.A328V	0.000	9	0.000	16	0.375	0	-	unknown(0)	deleterious(0.01)	-	NULL
OR11L1	391189	genome.wustl.edu	37	1	248005154	248005154	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001001959.1	-1	provisional	p.L15	0.004	140	0%	145	33.8%	0	-	-	-	-	superfamily_SSF81321
ROCK2	9475	genome.wustl.edu	37	2	11338879	11338879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004850.3	-1	reviewed	p.L978I	1.000	73	0%	77	40.3%	4	50%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_Rho_Binding
ATAD2B	54454	genome.wustl.edu	37	2	23980784	23980784	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000381024	-1	known	p.M470T	1.000	265	0%	275	33.5%	2	100%	-	-	-	NULL
DTNB	1838	genome.wustl.edu	37	2	25611077	25611077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_021907.3	-1	reviewed	p.A577T	0.999	68	0%	93	39.8%	136	44.1%	benign(0.004)	tolerated(0.11)	neutral(0.272)	NULL
FOSL2	2355	genome.wustl.edu	37	2	28631704	28631704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005253.3	+1	reviewed	p.R145C	0.995	48	0%	68	39.7%	73	32.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,HMMPfam_bZIP_2
EHD3	30845	genome.wustl.edu	37	2	31467261	31467261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014600.2	+1	validated	p.D117N	1.000	135	0%	147	36.1%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Dynamin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
BIRC6	57448	genome.wustl.edu	37	2	32658772	32658772	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016252.3	+1	reviewed	p.H1103	1.000	273	0%	294	26.5%	1	0%	-	-	-	NULL
FAM82A1	151393	genome.wustl.edu	37	2	38179324	38179324	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_144713.3	+1	validated	p.P322	0.000	44	2.3%	41	36.6%	0	-	-	-	-	NULL
PPP1R21	129285	genome.wustl.edu	37	2	48737227	48737227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001135629.1	+1	validated	p.A720V	1.000	231	0%	197	29.4%	23	56.5%	possibly_damaging(0.907)	deleterious(0.01)	deleterious(0.766)	HMMPfam_TTKRSYEDQ
SPTBN1	6711	genome.wustl.edu	37	2	54891625	54891625	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003128.2	+1	reviewed	p.N2152	0.104	107	0.9%	116	32.8%	83	36.1%	-	-	-	NULL
EHBP1	23301	genome.wustl.edu	37	2	63223864	63223864	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015252.3	+1	reviewed	p.A1093	1.000	195	0%	171	33.9%	14	64.2%	-	-	-	NULL
CD207	50489	genome.wustl.edu	37	2	71058265	71058265	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015717.2	-1	validated	p.P301	0.000	475	0.2%	373	38.9%	15	6.6%	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1
GGCX	2677	genome.wustl.edu	37	2	85779092	85779092	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000821.4	-1	reviewed	p.P484	1.000	105	0%	108	38%	25	48%	-	-	-	HMMPfam_VKG_Carbox,superfamily_RmlC_like_cupin
IMMT	10989	genome.wustl.edu	37	2	86371639	86371639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006839.2	-1	validated	p.P677S	1.000	140	0%	166	36.1%	26	50%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Mitofilin
KCNIP3	30818	genome.wustl.edu	37	2	96012813	96012813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001034914.1	+1	reviewed	p.L16V	0.994	81	0%	107	35.5%	0	-	benign(0)	tolerated(1)	-	NULL
IWS1	55677	genome.wustl.edu	37	2	128263074	128263074	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017969.2	-1	validated	p.N135	0.426	185	0.5%	182	31.9%	3	66.6%	-	-	-	NULL
PTPN18	26469	genome.wustl.edu	37	2	131128343	131128343	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014369.3	+1	reviewed	p.A274	0.001	181	0%	186	40.3%	33	42.4%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
THSD7B	80731	genome.wustl.edu	37	2	138033516	138033516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080427.1	+1	provisional	p.P776H	0.545	290	0%	272	33.5%	0	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	superfamily_TSP-1 type 1 repeat
PRPF40A	55660	genome.wustl.edu	37	2	153520415	153520415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017892.3	-1	validated	p.K649T	1.000	72	0%	70	31.4%	9	77.7%	possibly_damaging(0.806)	deleterious(0.01)	deleterious(0.709)	NULL
IFIH1	64135	genome.wustl.edu	37	2	163123794	163123794	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022168.2	-1	reviewed	p.K998fs	0.602	-	-	-	-	-	-	-	-	-	NULL
TTC21B	79809	genome.wustl.edu	37	2	166747050	166747050	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024753.3	-1	validated	p.L1068	0.998	207	0%	162	32.1%	3	33.3%	-	-	-	superfamily_TPR-like
UBR3	130507	genome.wustl.edu	37	2	170732402	170732402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_172070.3	+1	validated	p.R263W	0.989	288	0%	209	34%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBR3	130507	genome.wustl.edu	37	2	170806214	170806214	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_172070.3	+1	validated	p.R1062G	1.000	112	0%	104	43.3%	2	50%	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	NULL
AGPS	8540	genome.wustl.edu	37	2	178301497	178301497	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003659.3	+1	reviewed	p.S149	0.981	123	0%	115	25.2%	1	0%	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672448	186672448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000424728	+1	known	p.T6139A	0.950	119	0%	130	37.7%	0	-	probably_damaging(0.992)	tolerated(0.24)	deleterious(0.485)	NULL
FN1	2335	genome.wustl.edu	37	2	216274814	216274814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_212482.1	-1	reviewed	p.K655N	1.000	341	0%	284	36.6%	7	0%	possibly_damaging(0.761)	deleterious(0.01)	deleterious(0.688)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
STK11IP	114790	genome.wustl.edu	37	2	220473844	220473844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000456909	+1	known	p.P612H	0.739	185	0%	222	31.1%	10	70%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220505609	220505609	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_201574.2	+1	validated	p.P1209	1.000	126	0%	134	32.1%	6	16.6%	-	-	-	NULL
SP140	11262	genome.wustl.edu	37	2	231106120	231106120	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007237.4	+1	validated	p.V136	0.000	287	0%	292	24.7%	1	0%	-	-	-	HMMPfam_Sp100
DIS3L2	129563	genome.wustl.edu	37	2	233001224	233001224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152383.4	+1	validated	p.G249S	1.000	299	0%	294	35.4%	6	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ALPI	248	genome.wustl.edu	37	2	233323081	233323081	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001631.3	+1	reviewed	p.S382	0.933	64	0%	99	31.3%	0	-	-	-	-	HMMPfam_Alk_phosphatase,HMMSmart_SM00098,superfamily_Alkaline phosphatase-like
KCNJ13	3769	genome.wustl.edu	37	2	233633450	233633450	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002242.4	-1	reviewed	p.V178	0.954	206	0%	200	38%	0	-	-	-	-	HMMPfam_IRK,superfamily_E set domains
GPC1	2817	genome.wustl.edu	37	2	241404520	241404520	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000420138	+1	known	p.R427*	0.001	37	0%	49	55.1%	64	42.1%	-	-	-	HMMPfam_Glypican
ITPR1	3708	genome.wustl.edu	37	3	4753527	4753527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001099952.2	+1	reviewed	p.T1684I	1.000	185	0%	162	32.1%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
BRPF1	7862	genome.wustl.edu	37	3	9783721	9783721	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001003694.1	+1	reviewed	p.Q623*	1.000	105	0%	163	33.1%	3	33.3%	-	-	-	superfamily_Bromodomain
TTLL3	26140	genome.wustl.edu	37	3	9870966	9870966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001025930.2	+1	provisional	p.A481T	0.002	32	0%	40	30%	91	39.5%	benign(0.017)	tolerated(0.37)	neutral(0.019)	HMMPfam_TTL
TOP2B	7155	genome.wustl.edu	37	3	25651066	25651068	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001068.2	-1	reviewed	p.K1303in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SLC22A14	9389	genome.wustl.edu	37	3	38354586	38354586	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004803.3	+1	validated	p.T347	0.074	121	0%	144	35.4%	1	100%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SCN10A	6336	genome.wustl.edu	37	3	38760296	38760296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006514.2	-1	validated	p.D1177Y	0.380	98	0%	103	32%	0	-	possibly_damaging(0.44)	deleterious(0)	deleterious(0.588)	superfamily_SSF81324
CCR8	1237	genome.wustl.edu	37	3	39374799	39374799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005201.3	+1	reviewed	p.L326P	0.000	80	0%	69	26.1%	0	-	benign(0.267)	tolerated(0.09)	neutral(0.325)	superfamily_Family A G protein-coupled receptor-like
ZNF502	91392	genome.wustl.edu	37	3	44763635	44763635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001134440.1	+1	validated	p.K442N	0.993	241	0%	214	29%	1	0%	unknown(0)	tolerated(0.05)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FYCO1	79443	genome.wustl.edu	37	3	46000922	46000922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024513.2	-1	validated	p.R1184W	0.996	73	0%	71	25.4%	7	14.2%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
LTF	4057	genome.wustl.edu	37	3	46479588	46479588	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002343.2	-1	reviewed	p.P647	0.000	191	0%	200	38%	2002	1.2%	-	-	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
KLHL18	23276	genome.wustl.edu	37	3	47378196	47378196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025010.4	+1	validated	p.N357S	1.000	174	0%	172	34.9%	11	36.3%	possibly_damaging(0.452)	deleterious(0.04)	deleterious(0.497)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CELSR3	1951	genome.wustl.edu	37	3	48682984	48682984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001407.2	-1	reviewed	p.S2563R	1.000	15	0%	34	41.2%	0	-	possibly_damaging(0.68)	tolerated(0.05)	deleterious(0.588)	HMMPfam_7tm_2
CELSR3	1951	genome.wustl.edu	37	3	48697730	48697730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001407.2	-1	reviewed	p.A780T	1.000	88	0%	120	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LAMB2	3913	genome.wustl.edu	37	3	49167685	49167685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002292.3	-1	reviewed	p.R402W	0.738	136	0%	175	35.4%	15	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
CAMKV	79012	genome.wustl.edu	37	3	49898890	49898890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000466535	-1	known	p.S128L	0.555	80	0%	119	11.8%	0	-	unknown(0)	-	-	NULL
CACNA2D2	9254	genome.wustl.edu	37	3	50417174	50417174	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001005505.1	-1	reviewed	p.D325	1.000	105	0%	135	35.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ADAMTS9	56999	genome.wustl.edu	37	3	64607937	64607937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_182920.1	-1	reviewed	p.K875E	1.000	127	0%	195	39.5%	3	33.3%	benign(0.01)	tolerated(0.19)	neutral(0.050)	superfamily_TSP-1 type 1 repeat
MAGI1	9223	genome.wustl.edu	37	3	65415651	65415651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001033057.1	-1	reviewed	p.T571A	1.000	271	0%	264	34.1%	12	33.3%	benign(0.297)	tolerated(0.3)	neutral(0.120)	NULL
TAGLN3	29114	genome.wustl.edu	37	3	111732267	111732267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001008272.1	+1	validated	p.Q157*	1.000	145	0%	132	25%	0	-	-	-	-	superfamily_Calponin-homology domain CH-domain
KIAA2018	205717	genome.wustl.edu	37	3	113376756	113376756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001009899.2	-1	validated	p.A1258V	0.585	137	0%	172	30.8%	0	-	benign(0.033)	tolerated(0.18)	neutral(0.058)	NULL
ILDR1	286676	genome.wustl.edu	37	3	121720276	121720276	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_175924.2	-1	provisional	p.I175	0.994	150	0.7%	187	32.1%	45	37.7%	-	-	-	HMMPfam_LSR
ESYT3	83850	genome.wustl.edu	37	3	138181013	138181013	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_031913.3	+1	validated	p.L294	0.784	242	0%	221	33.5%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ACPL2	92370	genome.wustl.edu	37	3	141012039	141012039	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001037172.1	+1	validated	p.G479*	0.681	78	0%	66	37.9%	15	33.3%	-	-	-	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141163624	141163624	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080412.2	+1	validated	p.P798	0.001	97	0%	96	43.8%	1	0%	-	-	-	NULL
IGSF10	285313	genome.wustl.edu	37	3	151164718	151164718	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178822.4	-1	validated	p.G1017	1.000	163	0%	172	29.7%	0	-	-	-	-	NULL
PTX3	5806	genome.wustl.edu	37	3	157160184	157160184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002852.3	+1	validated	p.R188C	1.000	68	0%	63	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
RSRC1	51319	genome.wustl.edu	37	3	158261994	158261994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016625.2	+1	provisional	p.A312V	1.000	176	0%	156	37.2%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PLD1	5337	genome.wustl.edu	37	3	171330169	171330169	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000446289	-1	known	p.W190*	1.000	231	0%	260	31.9%	1	0%	possibly_damaging(0.924)	deleterious(0.02)	deleterious(0.756)	superfamily_Phospholipase D/nuclease
KCNMB2	10242	genome.wustl.edu	37	3	178560711	178560711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005832.3	+1	reviewed	p.R232W	0.930	100	0%	87	40.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CTBP1	1487	genome.wustl.edu	37	4	1219270	1219270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001328.2	-1	reviewed	p.R142Q	0.986	17	0%	31	35.5%	436	45.6%	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
MSX1	4487	genome.wustl.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701	byCluster;by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002448.3	+1	reviewed	p.A40G	0.097	3	0.000	7	0.857	13	38.4%	possibly_damaging(0.868)	tolerated(0.18)	neutral(0.393)	NULL
SLC2A9	56606	genome.wustl.edu	37	4	9987346	9987346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020041.2	-1	reviewed	p.A161V	0.909	190	0%	183	33.3%	1	0%	possibly_damaging(0.773)	deleterious(0.01)	deleterious(0.693)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
BOD1L	259282	genome.wustl.edu	37	4	13615990	13615991	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_148894.2	-1	validated	p.K335fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF81995
DTHD1	401124	genome.wustl.edu	37	4	36296646	36296646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001136536.3	+1	validated	p.P253H	0.008	169	0%	184	35.9%	2	50%	possibly_damaging(0.448)	deleterious(0)	deleterious(0.591)	NULL
SCFD2	152579	genome.wustl.edu	37	4	53787024	53787024	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152540.3	-1	validated	p.S525	0.004	111	0%	75	38.7%	1	0%	-	-	-	superfamily_Sec1/munc18-like (SM) proteins
HOPX	84525	genome.wustl.edu	37	4	57516863	57516863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001145460.1	-1	reviewed	p.P105L	0.116	126	0%	146	35.6%	0	-	unknown(0)	deleterious(0)	-	NULL
UGT2B11	10720	genome.wustl.edu	37	4	69879873	69879873	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000381096	-1	known	e4-1	1.000	320	0%	267	30.7%	0	-	-	-	-	-
SLC4A4	8671	genome.wustl.edu	37	4	72399971	72399971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001134742.1	+1	reviewed	p.V770I	1.000	227	0%	167	30.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_HCO3_cotransp
SOWAHB	345079	genome.wustl.edu	37	4	77817906	77817906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001029870.1	-1	provisional	p.P366L	0.001	64	0%	53	30.2%	0	-	benign(0.002)	tolerated(1)	-	NULL
ANTXR2	118429	genome.wustl.edu	37	4	80976572	80976572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001145794.1	-1	reviewed	p.I143T	0.998	223	0%	181	36.5%	2	50%	possibly_damaging(0.669)	deleterious(0)	deleterious(0.681)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
IBSP	3381	genome.wustl.edu	37	4	88733023	88733023	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004967.3	+1	reviewed	p.Y305	0.045	78	0%	75	29.3%	1	0%	-	-	-	HMMPfam_BSP_II
SLC9B1	150159	genome.wustl.edu	37	4	103870443	103870443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_139173.2	-1	reviewed	p.P118H	0.978	250	0%	200	20%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Na_H_Exchanger
TACR3	6870	genome.wustl.edu	37	4	104579526	104579526	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001059.1	-1	reviewed	p.L195	1.000	238	0%	187	26.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GSTCD	79807	genome.wustl.edu	37	4	106763261	106763261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001031720.2	+1	validated	p.V579I	1.000	433	0%	376	35.9%	1	0%	possibly_damaging(0.761)	tolerated(0.24)	neutral(0.319)	NULL
NUDT6	11162	genome.wustl.edu	37	4	123814193	123814193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007083.3	-1	validated	p.E247D	1.000	271	0%	243	28.8%	2	0%	benign(0.009)	tolerated(0.14)	neutral(0.250)	HMMPfam_NUDIX,superfamily_Nudix
LARP1B	55132	genome.wustl.edu	37	4	129035811	129035811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018078.2	+1	reviewed	p.G359C	1.000	191	0%	211	29.4%	0	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
PCDH10	57575	genome.wustl.edu	37	4	134073196	134073196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032961.1	+1	reviewed	p.R634H	1.000	14	0%	21	33.3%	0	-	probably_damaging(1)	tolerated(0.57)	deleterious(0.506)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FHDC1	85462	genome.wustl.edu	37	4	153874672	153874672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_033393.2	+1	validated	p.R174W	1.000	284	0%	222	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
KIAA0922	23240	genome.wustl.edu	37	4	154513671	154513671	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015196.3	+1	validated	p.S618	0.123	382	0%	345	35.9%	4	25%	-	-	-	NULL
NEK1	4750	genome.wustl.edu	37	4	170321441	170321441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_012224.1	-1	validated	p.N1233S	1.000	133	0%	110	40.9%	2	100%	benign(0.004)	tolerated(0.24)	neutral(0.037)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186536285	186536285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_021069.4	-1	reviewed	p.V890I	1.000	259	0%	254	25.6%	12	41.6%	probably_damaging(0.99)	tolerated(0.2)	deleterious(0.490)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SDHA	6389	genome.wustl.edu	37	5	256475	256475	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004168.2	+1	reviewed	p.I645	0.961	249	0%	234	28.6%	520	37.8%	-	-	-	HMMPfam_Succ_DH_flav_C,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
PDZD2	23037	genome.wustl.edu	37	5	32098579	32098579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178140.2	+1	reviewed	p.N2686S	0.239	187	0%	167	33.5%	2	100%	benign(0.025)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00228,superfamily_PDZ domain-like
ARL15	54622	genome.wustl.edu	37	5	53409139	53409139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_019087.2	-1	validated	p.A119T	1.000	213	0%	166	41%	3	66.6%	benign(0.418)	deleterious(0)	deleterious(0.580)	HMMPfam_Arf,superfamily_SSF52540
MAST4	375449	genome.wustl.edu	37	5	66459510	66459510	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000443808	+1	known	p.R558C	0.001	11	0%	21	33.3%	2	0%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589607	67589609	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_181523.1	+1	reviewed	p.E458in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TNPO1	3842	genome.wustl.edu	37	5	72178964	72178964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002270.3	+1	reviewed	p.T352M	1.000	133	0%	151	39.7%	52	48%	possibly_damaging(0.504)	tolerated(0.16)	neutral(0.228)	superfamily_ARM repeat
HMGCR	3156	genome.wustl.edu	37	5	74646998	74646998	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000859.2	+1	reviewed	p.S349	0.639	118	0%	136	33.8%	3	33.3%	-	-	-	NULL
LHFPL2	10184	genome.wustl.edu	37	5	77784762	77784762	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005779.2	-1	reviewed	p.Q215	1.000	241	0%	234	25.6%	1	0%	-	-	-	NULL
TMEM161B	153396	genome.wustl.edu	37	5	87536685	87536685	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_153354.3	-1	provisional	p.M18L	1.000	200	0%	171	35.1%	3	66.6%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Tmemb_161AB
DCP2	167227	genome.wustl.edu	37	5	112339641	112339641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152624.4	+1	validated	p.R270L	1.000	109	0%	93	34.4%	1	0%	benign(0.131)	deleterious(0.04)	neutral(0.360)	NULL
FTMT	94033	genome.wustl.edu	37	5	121187928	121187928	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_177478.1	+1	validated	p.A90	0.986	68	0%	72	15.3%	0	-	-	-	-	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
PITX1	5307	genome.wustl.edu	37	5	134367188	134367188	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002653.4	-1	reviewed	p.R60	0.858	44	0%	55	30.9%	1	0%	-	-	-	NULL
PCDHA3	56145	genome.wustl.edu	37	5	140180965	140180965	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018906.2	+1	reviewed	p.P61	0.998	66	1.5%	69	23.2%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140308197	140308197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018898.3	+1	reviewed	p.A574T	0.998	192	0%	197	35%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHB13	56123	genome.wustl.edu	37	5	140594909	140594909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018933.2	+1	reviewed	p.T405M	0.034	149	0.7%	153	34%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGB1	56104	genome.wustl.edu	37	5	140731491	140731491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018922.2	+1	reviewed	p.A555V	1.000	20	0%	29	27.6%	2	0%	possibly_damaging(0.498)	tolerated(0.06)	deleterious(0.489)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA4	56111	genome.wustl.edu	37	5	140736217	140736217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018917.2	+1	reviewed	p.N484Y	1.000	225	0%	226	37.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HDAC3	8841	genome.wustl.edu	37	5	141008174	141008174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003883.3	-1	reviewed	p.R215C	1.000	106	0%	115	33.9%	65	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
G3BP1	10146	genome.wustl.edu	37	5	151179895	151179895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005754.2	+1	reviewed	p.D358N	1.000	166	0%	163	31.3%	52	36.5%	unknown(0)	tolerated(0.09)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
C5orf4	10826	genome.wustl.edu	37	5	154203063	154203063	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032385.3	-1	validated	p.P152	0.200	186	0%	166	33.7%	3	33.3%	unknown(0)	-	-	NULL
EBF1	1879	genome.wustl.edu	37	5	158140014	158140014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024007.3	-1	validated	p.V445M	0.998	172	0%	180	36.7%	9	0%	possibly_damaging(0.768)	deleterious(0.02)	deleterious(0.668)	NULL
RANBP17	64901	genome.wustl.edu	37	5	170351478	170351478	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022897.2	+1	provisional	p.F464	1.000	359	0%	333	31.2%	7	42.8%	-	-	-	superfamily_ARM repeat
TBC1D9B	23061	genome.wustl.edu	37	5	179320259	179320259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198868.2	-1	validated	p.K262N	0.941	46	0%	66	34.8%	53	64.1%	benign(0.13)	tolerated(0.09)	neutral(0.307)	NULL
RIPK1	8737	genome.wustl.edu	37	6	3089839	3089842	+	Frame_Shift_Del	DEL	TTTA	TTTA	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	TTTA	TTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003804.3	+1	validated	p.Y289fs	1.000:0.995:0.998:0.987	-	-	-	-	-	-	-	-	-	HMMSmart_SM00220
JARID2	3720	genome.wustl.edu	37	6	15507446	15507446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004973.2	+1	reviewed	p.G874D	1.000	132	0%	153	17%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF184	7738	genome.wustl.edu	37	6	27420670	27420670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007149.2	-1	validated	p.K223R	0.999	210	0%	150	37.3%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HIST1H2BO	8348	genome.wustl.edu	37	6	27861416	27861416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003527.4	+1	reviewed	p.A59V	1.000	122	0%	174	27%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
ZSCAN12	9753	genome.wustl.edu	37	6	28358526	28358526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000361028	-1	known	p.E514G	0.001	151	0%	162	32.7%	0	-	possibly_damaging(0.662)	tolerated(0.29)	neutral(0.263)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
BAG6	7917	genome.wustl.edu	37	6	31612090	31612090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000404765	-1	known	p.A517T	1.000	22	0%	36	30.6%	86	73.2%	probably_damaging(0.98)	tolerated(0.32)	neutral(0.448)	NULL
ATF6B	1388	genome.wustl.edu	37	6	32089055	32089055	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004381.4	-1	reviewed	p.A183	0.355	131	0%	198	39.9%	65	47.6%	-	-	-	NULL
FKBPL	63943	genome.wustl.edu	37	6	32096687	32096687	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022110.3	-1	reviewed	p.R291	1.000	108	0%	102	39.2%	5	80%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
ITPR3	3710	genome.wustl.edu	37	6	33635636	33635636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002224.2	+1	validated	p.T594I	1.000	182	0%	199	37.2%	17	41.1%	possibly_damaging(0.746)	deleterious(0)	deleterious(0.719)	HMMPfam_RYDR_ITPR,superfamily_SSF100909
LRFN2	57497	genome.wustl.edu	37	6	40400349	40400349	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020737.1	-1	provisional	p.S168	0.006	132	0.8%	136	31.6%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
TREM1	54210	genome.wustl.edu	37	6	41248741	41248741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018643.2	-1	provisional	p.P186H	0.004	513	0%	470	32.1%	17	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TAF8	129685	genome.wustl.edu	37	6	42025185	42025185	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_138572.2	+1	reviewed	p.P141	0.603	130	0%	151	35.8%	36	36.1%	-	-	-	NULL
TRERF1	55809	genome.wustl.edu	37	6	42227461	42227461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_033502.2	-1	reviewed	p.E629K	1.000	62	0%	75	32%	1	0%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	NULL
MEP1A	4224	genome.wustl.edu	37	6	46806777	46806777	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005588.2	+1	validated	p.H715	0.391	71	0%	100	22%	0	-	-	-	-	superfamily_SSF57196
DST	667	genome.wustl.edu	37	6	56469288	56469288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000370769	-1	known	p.A3169T	0.001	53	0%	40	50%	0	-	benign(0.008)	tolerated(1)	-	NULL
PHIP	55023	genome.wustl.edu	37	6	79668220	79668220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017934.5	-1	validated	p.V1252M	1.000	110	0%	79	31.6%	0	-	possibly_damaging(0.729)	deleterious(0)	deleterious(0.710)	HMMSmart_SM00297,superfamily_Bromodomain
CGA	1081	genome.wustl.edu	37	6	87797874	87797874	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000735.2	-1	reviewed	p.L15	1.000	211	0%	187	13.4%	0	-	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969169	87969169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015021.1	+1	validated	p.Q1941P	1.000	25	0%	32	25%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
MMS22L	253714	genome.wustl.edu	37	6	97627335	97627335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198468.2	-1	predicted	p.L829I	0.859	189	0%	129	31.8%	0	-	possibly_damaging(0.84)	tolerated(0.26)	neutral(0.356)	NULL
SOBP	55084	genome.wustl.edu	37	6	107827628	107827628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018013.3	+1	validated	p.A140T	1.000	108	0%	137	35.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138584202	138584202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020340.4	+1	validated	p.H528N	0.088	63	0%	70	34.3%	10	60%	benign(0)	tolerated(1)	-	NULL
TXLNB	167838	genome.wustl.edu	37	6	139609844	139609844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_153235.3	-1	validated	p.D65N	1.000	279	0%	274	36.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UTRN	7402	genome.wustl.edu	37	6	144858754	144858754	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007124.2	+1	reviewed	p.R2090	0.000	151	0%	146	11%	3	0%	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
TULP4	56995	genome.wustl.edu	37	6	158735163	158735163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020245.3	+1	validated	p.R39C	1.000	185	0%	176	20.5%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
THBS2	7058	genome.wustl.edu	37	6	169632141	169632141	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003247.2	-1	reviewed	p.S695	0.597	144	0%	190	33.7%	3	0%	-	-	-	superfamily_SSF103647
COX19	90639	genome.wustl.edu	37	7	1012825	1012825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001031617.2	-1	validated	p.R62S	0.980	266	0%	273	32.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CHCH
MAD1L1	8379	genome.wustl.edu	37	7	1976404	1976404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001013836.1	-1	reviewed	p.R576C	0.196	17	0%	28	39.3%	33	27.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MAD
LFNG	3955	genome.wustl.edu	37	7	2566829	2566829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001040167.1	+1	reviewed	p.R375S	0.003	85	0%	132	27.3%	27	22.2%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
SDK1	221935	genome.wustl.edu	37	7	4167035	4167035	+	Silent	SNP	C	C	T	rs139165481	by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152744.3	+1	validated	p.N1282	0.317	169	0%	170	37.6%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
THSD7A	221981	genome.wustl.edu	37	7	11446941	11446941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015204.2	-1	validated	p.G1303D	1.000	157	0%	138	37.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NFE2L3	9603	genome.wustl.edu	37	7	26225110	26225110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004289.6	+1	reviewed	p.R598C	1.000	124	0%	106	34%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1
CBX3	11335	genome.wustl.edu	37	7	26246036	26246036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007276.3	+1	reviewed	p.A25T	1.000	284	0%	223	25.6%	14	21.4%	benign(0.093)	tolerated(0.36)	neutral(0.027)	superfamily_Chromo domain-like
HOXA9	3205	genome.wustl.edu	37	7	27204919	27204919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152739.3	-1	reviewed	p.P53L	1.000	6	0.000	13	0.385	0	-	possibly_damaging(0.751)	deleterious(0.02)	deleterious(0.659)	HMMPfam_Hox9_act
AMPH	273	genome.wustl.edu	37	7	38466574	38466574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001635.2	-1	reviewed	p.S399T	0.932	275	0.4%	237	33.3%	0	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
VPS41	27072	genome.wustl.edu	37	7	38857473	38857473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014396.3	-1	reviewed	p.V132M	0.999	263	0%	218	40.8%	7	28.5%	possibly_damaging(0.46)	deleterious(0.04)	deleterious(0.500)	superfamily_WD40 repeat-like
C7orf25	79020	genome.wustl.edu	37	7	42949523	42949524	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001099858.1	-1	validated	p.R384fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1308
SBDS	51119	genome.wustl.edu	37	7	66456165	66456165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016038.2	-1	reviewed	p.K195E	1.000	488	0%	508	35%	4	50%	benign(0.001)	tolerated(1)	-	HMMPfam_SBDS_C
AUTS2	26053	genome.wustl.edu	37	7	70252292	70252292	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015570.2	+1	validated	p.S802	1.000	42	2.4%	60	30%	7	42.8%	-	-	-	NULL
POM121C	100101267	genome.wustl.edu	37	7	75051540	75051540	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001099415.1	-1	validated	p.P665	0.000	141	0%	201	9%	16	25%	-	-	-	NULL
CCL24	6369	genome.wustl.edu	37	7	75442687	75442687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002991.2	-1	reviewed	p.P43H	0.910	59	0%	94	30.9%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
ARPC1A	10552	genome.wustl.edu	37	7	98951746	98951746	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006409.2	+1	reviewed	e5+2	1.000	126	0%	180	35.6%	0	-	-	-	-	-
ZNF498	221785	genome.wustl.edu	37	7	99227619	99227619	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145115.2	+1	validated	p.H537	0.998	13	0%	13	30.8%	12	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PVRIG	79037	genome.wustl.edu	37	7	99817897	99817897	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024070.3	+1	validated	p.P93	0.300	46	0%	78	14.1%	9	66.6%	-	-	-	NULL
LRRN3	54674	genome.wustl.edu	37	7	110762840	110762840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001099658.1	+1	validated	p.M4I	1.000	179	0%	167	36.5%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
LRRC4	64101	genome.wustl.edu	37	7	127670023	127670023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022143.4	-1	validated	p.E224G	1.000	21	0%	18	22.2%	4	50%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SVOPL	136306	genome.wustl.edu	37	7	138310793	138310793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001139456.1	-1	validated	p.A395V	0.025	151	0%	144	28.5%	2	50%	benign(0.011)	tolerated(0.87)	neutral(0.001)	superfamily_MFS general substrate transporter
ATP6V0A4	50617	genome.wustl.edu	37	7	138444498	138444498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020632.2	-1	reviewed	p.T213M	1.000	118	0%	149	28.9%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_V_ATPase_I
LOC643438	643438	genome.wustl.edu	37	7	148334428	148334428	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	XR_015310.2	+1	model	NULL	0.994	110	0%	110	38.2%	0	-	-	-	-	-
ATG9B	285973	genome.wustl.edu	37	7	150715498	150715498	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173681.5	-1	validated	p.A585	0.882	18	0%	26	34.6%	1	100%	-	-	-	HMMPfam_APG9
PTPRN2	5799	genome.wustl.edu	37	7	157449064	157449064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002847.3	-1	reviewed	p.T727	1.000	79	0%	83	32.5%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
ARHGEF10	9639	genome.wustl.edu	37	8	1905104	1905104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014629.2	+1	reviewed	p.P1237H	0.000	72	0%	111	32.4%	8	62.5%	benign(0.234)	tolerated(0.06)	neutral(0.346)	NULL
XKR6	286046	genome.wustl.edu	37	8	10756199	10756199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173683.3	-1	provisional	p.M397V	1.000	161	0%	186	43.5%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	HMMPfam_XK-related
DOK2	9046	genome.wustl.edu	37	8	21767296	21767296	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003974.2	-1	reviewed	p.P255	0.092	172	0%	210	41%	10	0%	-	-	-	NULL
PDLIM2	64236	genome.wustl.edu	37	8	22451333	22451333	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_176871.2	+1	validated	p.R323	0.003	73	0%	88	15.9%	35	0%	-	-	-	HMMPfam_LIM
SLC25A37	51312	genome.wustl.edu	37	8	23386590	23386590	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016612.2	+1	provisional	p.G25	1.000	21	0%	28	35.7%	15	33.3%	-	-	-	NULL
TRIM35	23087	genome.wustl.edu	37	8	27168355	27168355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_171982.3	-1	validated	p.R133H	1.000	15	0%	21	33.3%	10	60%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_zf-B_box,HMMSmart_SM00336
TRPA1	8989	genome.wustl.edu	37	8	72967731	72967731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007332.2	-1	reviewed	p.A490V	1.000	198	0%	162	37%	0	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
STAU2	27067	genome.wustl.edu	37	8	74525998	74525998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014393.2	-1	reviewed	p.R259H	1.000	186	0%	131	35.9%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
WWP1	11059	genome.wustl.edu	37	8	87460686	87460686	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007013.3	+1	validated	p.L739	1.000	256	0%	237	33.8%	4	25%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
OSGIN2	734	genome.wustl.edu	37	8	90937237	90937237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001126111.1	+1	validated	p.R376H	1.000	143	0%	137	33.6%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_FAD/NAD(P)-binding domain
NBN	4683	genome.wustl.edu	37	8	90949269	90949269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002485.4	-1	reviewed	p.A740V	1.000	260	0%	213	25.4%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nbs1_C
DSCC1	79075	genome.wustl.edu	37	8	120867983	120867983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024094.2	-1	validated	p.N18I	1.000	18	0%	31	48.4%	2	50%	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	NULL
TRMT12	55039	genome.wustl.edu	37	8	125463285	125463285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017956.3	+1	validated	p.R39S	0.789	221	0%	200	36%	5	40%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133806801	133806801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016018.4	+1	validated	p.G77W	1.000	199	0.5%	157	36.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tudor/PWWP/MBT
NAPRT1	93100	genome.wustl.edu	37	8	144657594	144657594	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145201.4	-1	validated	p.D430	0.009	40	0%	59	33.9%	224	34.8%	-	-	-	superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like
ARHGAP39	80728	genome.wustl.edu	37	8	145770812	145770812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025251.1	-1	validated	p.R781L	1.000	57	0%	75	41.3%	20	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MyTH4,HMMSmart_SM00139
TYRP1	7306	genome.wustl.edu	37	9	12708024	12708024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000550.2	+1	reviewed	p.A430V	1.000	109	0%	123	38.2%	0	-	possibly_damaging(0.762)	deleterious(0)	deleterious(0.727)	superfamily_Di-copper_centre
ADAMTSL1	92949	genome.wustl.edu	37	9	18889711	18889711	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001040272.4	+1	validated	p.Q1536	0.929	39	0%	53	35.8%	10	60%	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RPS6	6194	genome.wustl.edu	37	9	19376329	19376329	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001010.2	-1	reviewed	p.R238*	1.000	110	0%	98	39.8%	339	61.9%	-	-	-	NULL
AQP3	360	genome.wustl.edu	37	9	33442166	33442166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004925.3	-1	reviewed	p.L252M	1.000	18	0%	32	46.9%	147	41.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_MIP,superfamily_Aquaporin-like
LOC642406	642406	genome.wustl.edu	37	9	40503182	40503182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	XM_002344253.1	-1	model	p.T255I	0.001	106	0%	97	22.7%	3	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ZNF658	26149	genome.wustl.edu	37	9	40774963	40774963	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_033160.5	-1	validated	p.I104	0.000	42	0%	48	37.5%	0	-	-	-	-	NULL
TJP2	9414	genome.wustl.edu	37	9	71852823	71852823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004817.3	+1	reviewed	p.G737S	1.000	281	0%	270	34.1%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC5	23137	genome.wustl.edu	37	9	72967220	72967220	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015110.3	+1	validated	p.R1093	0.897	129	0%	112	42.9%	0	-	-	-	-	NULL
ZNF510	22869	genome.wustl.edu	37	9	99538316	99538316	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014930.1	-1	provisional	p.V12	0.074	239	0%	212	31.1%	3	100%	-	-	-	NULL
CTSL2	1515	genome.wustl.edu	37	9	99799010	99799010	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001333.2	-1	reviewed	p.W139*	1.000	137	0%	125	14.4%	314	0.6%	-	-	-	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
COL27A1	85301	genome.wustl.edu	37	9	116930187	116930187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032888.2	+1	validated	p.R118S	0.998	30	0%	38	39.5%	10	40%	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
FAM129B	64855	genome.wustl.edu	37	9	130279252	130279252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022833.2	-1	validated	p.R286H	0.030	73	0%	89	39.3%	178	46%	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
CERCAM	51148	genome.wustl.edu	37	9	131198123	131198123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016174.4	+1	validated	p.R576H	0.058	12	0%	37	40.5%	25	24%	benign(0.006)	tolerated(0.22)	neutral(0.042)	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136321278	136321278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_139025.3	+1	reviewed	p.R1219Q	0.258	63	0%	64	40.6%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spermadhesin CUB domain
CAMSAP1	157922	genome.wustl.edu	37	9	138710417	138710417	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015447.3	-1	validated	p.A1335	0.002	111	0%	110	35.5%	20	30%	-	-	-	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139396913	139396913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017617.3	-1	reviewed	p.A1732V	0.003	4	0.000	11	0.455	9	22.2%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_NODP
FAM69B	138311	genome.wustl.edu	37	9	139617928	139617928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152421.3	+1	validated	p.R333H	0.821	10	0%	37	35.1%	131	48%	benign(0.008)	tolerated(0.42)	neutral(0.014)	NULL
LCN15	389812	genome.wustl.edu	37	9	139658342	139658342	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_203347.1	-1	provisional	p.H72	0.003	67	0%	105	29.5%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Calycin
CELF2	10659	genome.wustl.edu	37	10	11259447	11259447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006561.3	+1	reviewed	p.H111Y	1.000	345	0.3%	269	32.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NMT2	9397	genome.wustl.edu	37	10	15172253	15172253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004808.2	-1	reviewed	p.R260W	1.000	109	0%	98	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NMT,superfamily_Acyl-CoA N-acyltransferases (Nat)
ARHGAP12	94134	genome.wustl.edu	37	10	32197451	32197451	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018287.5	-1	provisional	p.P111	0.997	140	0%	114	36%	2	100%	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61828706	61828706	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020987.2	-1	reviewed	p.T3978S	0.999	165	0%	166	38.6%	0	-	benign(0)	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000371953	+1	known	p.R130G	1.000	272	0%	266	34.2%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717695	89717695	+	Nonsense_Mutation	SNP	C	C	G	rs190070312	by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000371953	+1	known	p.Y240*	1.000	219	0%	200	32%	33	18.1%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
EXOC6	54536	genome.wustl.edu	37	10	94669266	94669266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_019053.4	+1	reviewed	p.M181V	1.000	142	0%	136	29.4%	1	100%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
LCOR	84458	genome.wustl.edu	37	10	98715396	98715396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032440.3	+1	validated	p.R340Q	1.000	83	0%	101	35.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RRP12	23223	genome.wustl.edu	37	10	99160849	99160849	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015179.3	-1	validated	e1+1	1.000	55	0%	56	37.5%	2	100%	-	-	-	-
ABCC2	1244	genome.wustl.edu	37	10	101591842	101591842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000392.3	+1	reviewed	p.F1071C	1.000	256	0%	243	42.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PKD2L1	9033	genome.wustl.edu	37	10	102058385	102058385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016112.2	-1	reviewed	p.S222N	1.000	138	0%	148	28.4%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_PKD_channel
XPNPEP1	7511	genome.wustl.edu	37	10	111651532	111651532	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020383.3	-1	reviewed	p.Y78*	1.000	326	0%	297	35%	23	47.8%	-	-	-	HMMPfam_Creatinase_N
HSPA12A	259217	genome.wustl.edu	37	10	118434792	118434792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025015.2	-1	validated	p.V510M	1.000	24	0%	38	34.2%	1	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_SSF53067
GRK5	2869	genome.wustl.edu	37	10	121207764	121207764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005308.2	+1	reviewed	p.V466I	0.460	82	0%	103	27.2%	4	0%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMSmart_S_TK_X,superfamily_Kinase_like
ATE1	11101	genome.wustl.edu	37	10	123662085	123662085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001001976.1	-1	reviewed	p.R212W	1.000	269	0%	261	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACADSB	36	genome.wustl.edu	37	10	124802660	124802660	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001609.3	+1	reviewed	p.T260	0.998	179	0%	165	33.3%	1	100%	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
PIDD	55367	genome.wustl.edu	37	11	799897	799897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145886.2	-1	reviewed	p.R798C	0.979	12	0%	19	21.1%	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
MRGPRE	116534	genome.wustl.edu	37	11	3249755	3249755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001039165.2	-1	validated	p.P91L	0.009	55	0%	68	39.7%	0	-	benign(0.066)	tolerated(0.73)	neutral(0.006)	HMMPfam_7tm_1,superfamily_SSF81321
CHRNA10	57053	genome.wustl.edu	37	11	3687577	3687577	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020402.2	-1	provisional	p.S371	0.620	52	0%	61	24.6%	1	0%	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ENSG00000186232	0	genome.wustl.edu	37	11	4351478	4351478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000334468	+1	known	p.Q128H	1.000	22	0%	38	31.6%	0	-	-	-	-	HMMPfam_Ssu72
MRVI1	10335	genome.wustl.edu	37	11	10622483	10622483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001098579.1	-1	reviewed	p.R658C	1.000	178	0%	182	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MRVI1
MICAL2	9645	genome.wustl.edu	37	11	12237867	12237867	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014632.2	+1	provisional	e6+1	1.000	121	0%	137	33.6%	3	100%	-	-	-	-
ARNTL	406	genome.wustl.edu	37	11	13387107	13387107	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001030272.1	+1	reviewed	p.E174*	1.000	381	0%	351	37.9%	3	0%	-	-	-	HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785
MYOD1	4654	genome.wustl.edu	37	11	17741690	17741690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002478.4	+1	reviewed	p.R121C	1.000	12	0%	11	45.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
NAV2	89797	genome.wustl.edu	37	11	20117243	20117243	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_182964.5	+1	validated	p.I1984N	1.000	481	0%	500	34%	8	25%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ACCS	84680	genome.wustl.edu	37	11	44096218	44096218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001127219.1	+1	validated	p.L159P	1.000	193	0%	195	32.3%	34	11.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
PTPRJ	5795	genome.wustl.edu	37	11	48188871	48188871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002843.3	+1	reviewed	p.A1324V	0.003	211	0%	233	33%	2	0%	benign(0.253)	tolerated(0.14)	neutral(0.276)	NULL
OR5T1	390155	genome.wustl.edu	37	11	56044076	56044076	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001004745.1	+1	provisional	p.W321*	0.000	55	0%	64	32.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OSBP	5007	genome.wustl.edu	37	11	59376069	59376069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002556.2	-1	reviewed	p.R237H	1.000	173	0%	158	38.6%	15	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
C11orf9	745	genome.wustl.edu	37	11	61533505	61533505	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001127392.1	+1	validated	p.S70	0.014	5	0.000	9	0.444	0	-	-	-	-	NULL
RASGRP2	10235	genome.wustl.edu	37	11	64503137	64503137	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001098670.1	-1	reviewed	e10-1	1.000	95	0%	179	34.1%	0	-	-	-	-	-
SPTBN2	6712	genome.wustl.edu	37	11	66475076	66475076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006946.2	-1	reviewed	p.A522T	1.000	26	0%	28	32.1%	13	61.5%	benign(0.202)	tolerated(0.05)	neutral(0.365)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PC	5091	genome.wustl.edu	37	11	66617225	66617227	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000920.3	-1	reviewed	p.E1001in_frame_del	0.995:0.981:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PYC_OADA,superfamily_SSF89000
CARNS1	57571	genome.wustl.edu	37	11	67191928	67191928	+	Silent	SNP	C	C	T	rs190057931	by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020811.1	+1	validated	p.G780	0.070	45	0%	46	41.3%	3	0%	-	-	-	superfamily_Glutathione synthetase ATP-binding domain-like
LRP5	4041	genome.wustl.edu	37	11	68177484	68177484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002335.2	+1	reviewed	p.L732I	1.000	119	0%	144	41.7%	62	46.7%	possibly_damaging(0.68)	tolerated(0.93)	neutral(0.242)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
PPP6R3	55291	genome.wustl.edu	37	11	68341614	68341614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018312.4	+1	validated	p.L410I	1.000	230	0%	207	36.7%	30	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SAPS
CCND1	595	genome.wustl.edu	37	11	69466021	69466021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_053056.2	+1	reviewed	p.P287S	1.000	18	0%	22	31.8%	21	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP35	57558	genome.wustl.edu	37	11	77921626	77921626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020798.2	+1	provisional	p.V909L	1.000	136	0%	121	35.5%	5	60%	unknown(0)	tolerated(1)	-	HMMPfam_UCH,superfamily_Cysteine proteinases
PRCP	5547	genome.wustl.edu	37	11	82564222	82564222	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_199418.2	-1	reviewed	p.F157	1.000	177	0%	135	40%	10	30%	-	-	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
DLG2	1740	genome.wustl.edu	37	11	83676499	83676499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001142699.1	-1	reviewed	p.S357G	1.000	407	0%	370	23%	0	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
HEPHL1	341208	genome.wustl.edu	37	11	93819199	93819200	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001098672.1	+1	validated	p.R642fs	0.987:0.996	-	-	-	-	-	-	-	-	-	superfamily_Cupredoxin
MTMR2	8898	genome.wustl.edu	37	11	95568541	95568541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016156.5	-1	reviewed	p.Q615H	1.000	301	0%	285	38.2%	10	30%	benign(0.057)	tolerated(0.05)	neutral(0.349)	NULL
MAML2	84441	genome.wustl.edu	37	11	95825653	95825653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032427.1	-1	validated	p.M514I	1.000	73	0%	77	28.6%	6	50%	unknown(0)	tolerated(0.13)	-	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118518698	118518698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001144758.1	+1	validated	p.R1187H	1.000	209	0%	251	39%	34	35.2%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
CBL	867	genome.wustl.edu	37	11	119103241	119103241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005188.2	+1	reviewed	p.Q93	1.000	171	0%	177	40.7%	1	0%	-	-	-	HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N
UBASH3B	84959	genome.wustl.edu	37	11	122653760	122653760	+	Splice_Site	DEL	G	G	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032873.4	+1	validated	e5-1	1.000	-	-	-	-	-	-	-	-	-	-
FOXRED1	55572	genome.wustl.edu	37	11	126142924	126142924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017547.2	+1	provisional	p.E123K	0.909	398	0%	416	31.5%	13	53.8%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
C11orf45	219833	genome.wustl.edu	37	11	128773290	128773290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145013.1	-1	provisional	p.V85I	0.000	82	0%	96	42.7%	1	0%	unknown(0)	-	-	NULL
ST14	6768	genome.wustl.edu	37	11	130066280	130066280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_021978.3	+1	reviewed	p.L387P	0.509	82	0%	100	40%	242	49.5%	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
SLC6A13	6540	genome.wustl.edu	37	12	330182	330182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016615.2	-1	provisional	p.G581R	0.004	112	0%	133	38.3%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
KCNA5	3741	genome.wustl.edu	37	12	5153711	5153711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002234.2	+1	reviewed	p.T133R	1.000	23	0%	38	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
USP5	8078	genome.wustl.edu	37	12	6972496	6972496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001098536.1	+1	validated	p.E637K	1.000	228	0%	234	28.2%	1	0%	benign(0.139)	tolerated(0.4)	neutral(0.028)	HMMPfam_UCH,superfamily_Cysteine proteinases
GRIN2B	2904	genome.wustl.edu	37	12	13716503	13716503	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000834.3	-1	reviewed	p.H1223	1.000	121	0%	138	33.3%	0	-	-	-	-	HMMPfam_NMDAR2_C
LOC728622	728622	genome.wustl.edu	37	12	17142133	17142133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	XM_001130365.3	+1	model	p.V25A	1.000	88	1.1%	112	31.2%	0	-	-	-	-	HMMSmart_SM00512,superfamily_POZ domain,HMMPfam_Skp1_POZ
C12orf39	80763	genome.wustl.edu	37	12	21679818	21679818	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_030572.2	+1	provisional	e2-2	0.832	386	0%	286	35.7%	0	-	-	-	-	-
LRMP	4033	genome.wustl.edu	37	12	25259932	25259932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006152.2	+1	reviewed	p.P402S	0.993	141	0%	121	27.3%	1	0%	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMPfam_MRVI1
ASUN	55726	genome.wustl.edu	37	12	27064214	27064214	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018164.2	-1	validated	p.L614	1.000	341	0%	270	37.4%	3	66.6%	-	-	-	HMMPfam_DUF2151
CNTN1	1272	genome.wustl.edu	37	12	41312548	41312548	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001843.2	+1	reviewed	p.R68*	0.998	185	0%	188	35.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ADAMTS20	80070	genome.wustl.edu	37	12	43944952	43944952	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025003.3	-1	validated	p.L71	0.635	151	0%	147	32.7%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
ADCY6	112	genome.wustl.edu	37	12	49164673	49164673	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015270.3	-1	reviewed	p.N1044	0.528	126	0%	148	33.8%	32	50%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
FMNL3	91010	genome.wustl.edu	37	12	50044573	50044573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_175736.4	-1	validated	p.A629V	0.983	432	0%	374	36.4%	9	22.2%	benign(0.093)	tolerated(0.29)	neutral(0.036)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
LARP4	113251	genome.wustl.edu	37	12	50869510	50869510	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_199188.2	+1	validated	p.R686	1.000	120	0%	121	33.9%	4	50%	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52200866	52200866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014191.2	+1	reviewed	p.R1866W	1.000	73	0%	85	42.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGA5	3678	genome.wustl.edu	37	12	54793513	54793513	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002205.2	-1	reviewed	p.L919	1.000	78	0%	95	35.8%	9	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
NCKAP1L	3071	genome.wustl.edu	37	12	54936412	54936412	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005337.4	+1	reviewed	p.P1109	0.972	276	0%	307	40.4%	15	0%	-	-	-	HMMPfam_Nckap1
NEUROD4	58158	genome.wustl.edu	37	12	55421002	55421002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_021191.2	+1	validated	p.S260N	1.000	159	0%	192	37%	0	-	possibly_damaging(0.869)	tolerated(1)	neutral(0.337)	NULL
LRP1	4035	genome.wustl.edu	37	12	57556224	57556224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002332.2	+1	reviewed	p.P776H	0.542	132	0%	177	32.8%	4	25%	benign(0.159)	deleterious(0.05)	neutral(0.359)	superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57605766	57605766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002332.2	+1	reviewed	p.G4439R	0.986	464	0%	542	28.8%	93	26.8%	possibly_damaging(0.708)	deleterious(0.04)	deleterious(0.605)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80750215	80750215	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000298820	+1	known	p.V376A	1.000	115	0%	106	32.1%	0	-	-	-	-	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81833826	81833826	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003625.2	-1	reviewed	e5-1	1.000	210	0%	163	38%	0	-	-	-	-	-
USP30	84749	genome.wustl.edu	37	12	109509480	109509480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032663.3	+1	validated	p.R182W	0.993	267	0%	294	13.6%	3	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_UCH,superfamily_SSF54001
CUX2	23316	genome.wustl.edu	37	12	111731306	111731306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015267.3	+1	validated	p.P165S	0.570	81	0%	155	34.8%	0	-	possibly_damaging(0.811)	tolerated(0.2)	neutral(0.354)	NULL
LHX5	64211	genome.wustl.edu	37	12	113906001	113906001	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022363.2	-1	reviewed	p.T202	0.991	85	0%	93	25.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TBX3	6926	genome.wustl.edu	37	12	115109929	115109929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016569.3	-1	reviewed	p.P650Q	0.772	31	0%	30	40%	6	66.6%	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	NULL
PXN	5829	genome.wustl.edu	37	12	120651943	120651943	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080855.1	-1	validated	p.P452	0.635	69	0%	78	37.2%	76	42.1%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SRSF9	8683	genome.wustl.edu	37	12	120901824	120901824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003769.2	-1	validated	p.E151K	1.000	352	0%	390	31.3%	479	41.1%	possibly_damaging(0.694)	deleterious(0)	deleterious(0.694)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SLC15A4	121260	genome.wustl.edu	37	12	129299428	129299428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145648.3	-1	validated	p.S245N	0.950	175	0%	209	37.8%	25	36%	benign(0.007)	tolerated(0.54)	neutral(0.007)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
EP400	57634	genome.wustl.edu	37	12	132522340	132522340	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015409.3	+1	validated	e30+2	1.000	137	0%	154	35.7%	1	100%	-	-	-	-
CHFR	55743	genome.wustl.edu	37	12	133430022	133430022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018223.2	-1	validated	p.T427M	0.000	23	0%	32	28.1%	15	26.6%	possibly_damaging(0.824)	deleterious(0.02)	deleterious(0.695)	NULL
MTUS2	23281	genome.wustl.edu	37	13	30054352	30054352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001033602.2	+1	validated	p.D1094Y	0.981	57	0%	64	29.7%	0	-	-	-	-	NULL
MLNR	2862	genome.wustl.edu	37	13	49796243	49796243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000398307	+1	known	p.H374Y	0.477	214	0%	238	32.8%	1	100%	unknown(0)	-	-	NULL
CLYBL	171425	genome.wustl.edu	37	13	100517211	100517211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000416504	+1	known	p.Y144C	0.000	156	0%	149	26.8%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
BIVM	54841	genome.wustl.edu	37	13	103492161	103492161	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017693.3	+1	validated	p.H486	0.542	104	0%	121	44.6%	6	66.6%	-	-	-	NULL
ING1	3621	genome.wustl.edu	37	13	111365324	111365324	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198217.1	+1	reviewed	p.E2*	0.000	25	0%	27	33.3%	0	-	-	-	-	NULL
ARHGEF7	8874	genome.wustl.edu	37	13	111932909	111932909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001113511.1	+1	reviewed	p.V558A	0.992	172	0.6%	205	36.1%	23	39.1%	probably_damaging(0.995)	tolerated(0.52)	neutral(0.466)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TUBGCP3	10426	genome.wustl.edu	37	13	113176744	113176744	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006322.4	-1	provisional	p.L545	0.002	130	0%	124	33.1%	3	66.6%	-	-	-	HMMPfam_Spc97_Spc98
FOXG1	2290	genome.wustl.edu	37	14	29237879	29237879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005249.3	+1	reviewed	p.T465M	1.000	108	0%	126	38.9%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TMX1	81542	genome.wustl.edu	37	14	51712043	51712043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_030755.4	+1	validated	p.R94Q	1.000	448	0%	388	32.2%	15	33.3%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
PPM1A	5494	genome.wustl.edu	37	14	60752341	60752341	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_177952.2	+1	reviewed	e3-1	1.000	157	0%	134	40.3%	0	-	-	-	-	-
TTLL5	23093	genome.wustl.edu	37	14	76211872	76211872	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015072.4	+1	reviewed	p.R479*	0.999	470	0.2%	407	32.4%	6	16.6%	-	-	-	NULL
ATXN3	4287	genome.wustl.edu	37	14	92537316	92537316	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004993.5	-1	reviewed	p.R318	0.061	144	0%	149	38.9%	10	50%	-	-	-	NULL
SERPINA4	5267	genome.wustl.edu	37	14	95035833	95035833	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006215.2	+1	provisional	p.H395	0.000	146	0%	152	27.6%	11	54.5%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDC42BPB	9578	genome.wustl.edu	37	14	103434809	103434809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006035.3	-1	reviewed	p.R747Q	1.000	218	0%	191	19.4%	6	0%	possibly_damaging(0.934)	tolerated(0.29)	neutral(0.409)	NULL
XRCC3	7517	genome.wustl.edu	37	14	104169586	104169586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001100118.1	-1	reviewed	p.R162H	1.000	73	0%	94	35.1%	5	40%	possibly_damaging(0.791)	tolerated(0.36)	neutral(0.317)	HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP1R13B	23368	genome.wustl.edu	37	14	104206283	104206283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015316.2	-1	reviewed	p.V824M	0.611	106	0.9%	132	38.6%	46	50%	possibly_damaging(0.51)	tolerated(0.22)	neutral(0.213)	NULL
TMEM179	388021	genome.wustl.edu	37	14	105061517	105061517	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_207379.1	-1	provisional	p.Q169	1.000	121	0%	166	41.6%	0	-	-	-	-	NULL
IGHG2	3501	genome.wustl.edu	37	14	106110879	106110879	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000390545	-1	known	p.C83	0.535	425	0%	518	13.5%	893	0%	-	-	-	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHV4-28	28400	genome.wustl.edu	37	14	106780764	106780764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000390612	-1	known	p.S34P	0.087	128	0.8%	154	32.5%	1	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_V-set,superfamily_SSF48726
FAM189A1	23359	genome.wustl.edu	37	15	29488646	29488646	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015307.1	-1	validated	p.R170	0.995	121	0%	116	31%	0	-	-	-	-	NULL
ENSG00000221138	0	genome.wustl.edu	37	15	33256249	33256249	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000408211	-1	novel	NULL	0.013	87	0%	123	20.3%	0	-	-	-	-	-
RYR3	6263	genome.wustl.edu	37	15	33952507	33952507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001036.3	+1	validated	p.R1502H	1.000	100	1%	128	34.4%	0	-	probably_damaging(0.999)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34105701	34105701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001036.3	+1	validated	p.W3475R	1.000	111	0%	136	26.5%	0	-	benign(0.366)	-	-	NULL
THBS1	7057	genome.wustl.edu	37	15	39886399	39886399	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003246.2	+1	reviewed	e19+2	1.000	213	0%	198	34.3%	0	-	-	-	-	-
GCHFR	2644	genome.wustl.edu	37	15	41059477	41059477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005258.2	+1	reviewed	p.R62H	0.984	122	0%	129	22.5%	71	42.2%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_GFRP,superfamily_GTP cyclohydrolase I feedback regulatory protein GFRP
STRC	161497	genome.wustl.edu	37	15	43999752	43999752	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000381686	-1	known	p.L1228	1.000	280	0%	273	33.7%	0	-	-	-	-	NULL
EIF3J	8669	genome.wustl.edu	37	15	44843113	44843113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003758.2	+1	validated	p.A63T	1.000	147	0%	137	46%	7	57.1%	unknown(0)	tolerated(0.48)	-	HMMPfam_eIF3_subunit
MAPK6	5597	genome.wustl.edu	37	15	52353495	52353495	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002748.3	+1	reviewed	e4-1	1.000	133	0%	129	41.9%	0	-	-	-	-	-
UNC13C	440279	genome.wustl.edu	37	15	54592505	54592505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080534.1	+1	provisional	p.A1401D	0.990	356	0%	270	27.4%	0	-	possibly_damaging(0.721)	tolerated(0.06)	deleterious(0.584)	NULL
KIF23	9493	genome.wustl.edu	37	15	69718690	69718690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_138555.1	+1	reviewed	p.R288H	1.000	188	0%	186	36.6%	0	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
HCN4	10021	genome.wustl.edu	37	15	73635767	73635767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005477.2	-1	reviewed	p.R390C	1.000	125	0%	129	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
TBC1D2B	23102	genome.wustl.edu	37	15	78305213	78305213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_144572.1	-1	validated	p.A741D	1.000	181	0%	267	30.7%	19	15.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
LINS	55180	genome.wustl.edu	37	15	101120777	101120777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001040614.1	-1	reviewed	p.L91I	0.997	230	0%	225	29.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCSK6	5046	genome.wustl.edu	37	15	101847443	101847443	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002570.3	-1	reviewed	p.H929Y	1.000	173	0%	172	30.8%	13	30.7%	-	-	-	NULL
CCDC154	645811	genome.wustl.edu	37	16	1487856	1487856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001143980.1	-1	provisional	p.D418N	0.147	11	0%	17	41.2%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
ZNF598	90850	genome.wustl.edu	37	16	2052654	2052654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000431526	-1	known	p.S182L	0.971	75	0%	105	29.5%	72	45.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLX4	84464	genome.wustl.edu	37	16	3644469	3644469	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032444.2	-1	provisional	p.P715	0.000	135	0%	177	28.2%	3	66.6%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
CARHSP1	23589	genome.wustl.edu	37	16	8952207	8952207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001042476.1	-1	validated	p.D94A	1.000	56	0%	79	45.6%	484	47.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
GRIN2A	2903	genome.wustl.edu	37	16	9858493	9858493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000833.3	-1	reviewed	p.R970W	1.000	238	0%	219	36.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_NMDAR2_C
TEKT5	146279	genome.wustl.edu	37	16	10788617	10788617	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_144674.1	-1	provisional	p.P38	1.000	82	0%	87	36.8%	0	-	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15728789	15728789	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014647.3	-1	validated	e3-1	1.000	516	0%	465	34.4%	0	-	-	-	-	-
ATP2A1	487	genome.wustl.edu	37	16	28905901	28905901	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173201.2	+1	reviewed	p.C420	1.000	70	0%	122	30.3%	0	-	-	-	-	superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
MAZ	4150	genome.wustl.edu	37	16	29819933	29819933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001042539.1	+1	validated	p.H384Y	1.000	64	0%	74	35.1%	721	43.1%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ARMC5	79798	genome.wustl.edu	37	16	31473680	31473680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001105247.1	+1	validated	p.R271Q	1.000	31	0%	48	35.4%	12	16.6%	probably_damaging(0.997)	tolerated(0.6)	deleterious(0.471)	superfamily_ARM repeat
RPGRIP1L	23322	genome.wustl.edu	37	16	53726257	53726257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015272.2	-1	reviewed	p.R84W	1.000	238	0%	179	32.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM192A	80011	genome.wustl.edu	37	16	57201040	57201040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024946.2	-1	validated	p.Q149H	1.000	207	0%	205	32.2%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTCF	10664	genome.wustl.edu	37	16	67662298	67662298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006565.2	+1	reviewed	p.R515H	1.000	159	0%	170	37.6%	66	45.4%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C16orf48	84080	genome.wustl.edu	37	16	67700043	67700043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032140.1	-1	predicted	p.Q71E	0.380	12	0%	20	25%	47	61.7%	benign(0.277)	tolerated(0.06)	neutral(0.352)	NULL
HAS3	3038	genome.wustl.edu	37	16	69143879	69143879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005329.2	+1	reviewed	p.R194H	1.000	54	0%	81	33.3%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53448
HYDIN	54768	genome.wustl.edu	37	16	70889141	70889141	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032821.2	-1	validated	p.K4110	0.999	185	0%	188	34%	0	-	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72829701	72829701	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006885.3	-1	reviewed	p.R2294*	1.000	213	0%	187	38%	6	33.3%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CMIP	80790	genome.wustl.edu	37	16	81737565	81737565	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198390.2	+1	validated	p.L656	1.000	90	0%	99	37.4%	53	49%	-	-	-	superfamily_RNI-like
DNAAF1	123872	genome.wustl.edu	37	16	84193342	84193342	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178452.4	+1	reviewed	p.V268	0.998	225	0%	211	39.8%	51	47%	-	-	-	superfamily_Outer arm dynein light chain 1
SLC43A2	124935	genome.wustl.edu	37	17	1519900	1519900	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152346.1	-1	provisional	p.I108	1.000	78	0%	138	35.5%	58	43.1%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RTN4RL1	146760	genome.wustl.edu	37	17	1841096	1841096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178568.2	-1	validated	p.C7Y	0.999	22	0%	29	48.3%	2	100%	unknown(0)	tolerated(0.23)	-	NULL
PSMB6	5694	genome.wustl.edu	37	17	4701093	4701095	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002798.1	+1	reviewed	p.E141in_frame_del	1.000:0.993:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
NLRP1	22861	genome.wustl.edu	37	17	5424849	5424849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_033004.3	-1	reviewed	p.R1260W	0.060	83	0%	131	42%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM6B	23135	genome.wustl.edu	37	17	7750989	7750989	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080424.1	+1	provisional	p.L461	0.996	11	0%	20	35%	3	33.3%	-	-	-	NULL
MYH1	4619	genome.wustl.edu	37	17	10404064	10404064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005963.3	-1	reviewed	p.N1248K	1.000	363	0%	319	33.5%	0	-	possibly_damaging(0.498)	deleterious(0.05)	deleterious(0.512)	HMMPfam_Myosin_tail_1
MAP2K4	6416	genome.wustl.edu	37	17	11998907	11998907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003010.2	+1	reviewed	p.V137M	1.000	300	0%	256	34%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LOC732391	732391	genome.wustl.edu	37	17	15469118	15469118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	XM_001722159.1	-1	model	p.L154P	0.000	174	0%	209	20.6%	1	0%	benign(0.273)	tolerated(0.14)	neutral(0.279)	NULL
TNFAIP1	7126	genome.wustl.edu	37	17	26668262	26668262	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_021137.4	+1	reviewed	e3-1	1.000	94	0%	91	36.3%	1	100%	-	-	-	-
MRPL45	84311	genome.wustl.edu	37	17	36454529	36454529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032351.3	+1	reviewed	p.R61W	0.996	141	0%	134	25.4%	9	22.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C17orf98	388381	genome.wustl.edu	37	17	36991465	36991465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080465.2	-1	validated	p.V148I	1.000	192	0%	219	40.2%	0	-	benign(0.008)	tolerated(0.86)	neutral(0.001)	NULL
CACNB1	782	genome.wustl.edu	37	17	37343158	37343158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000723.3	-1	reviewed	p.G147R	1.000	65	0%	75	46.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,superfamily_SH3-domain
WIPF2	147179	genome.wustl.edu	37	17	38420978	38420978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_133264.4	+1	validated	p.R184W	0.986	53	0%	76	38.2%	11	27.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ACLY	47	genome.wustl.edu	37	17	40024082	40024082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001096.2	-1	reviewed	p.P1096L	1.000	208	0%	218	32.6%	133	43.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Citrate_synthase_core
DHX58	79132	genome.wustl.edu	37	17	40256845	40256845	+	Missense_Mutation	SNP	G	G	A	rs188650103	by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024119.2	-1	validated	p.T501M	0.000	89	0%	100	27%	10	70%	possibly_damaging(0.668)	tolerated(0.06)	deleterious(0.559)	superfamily_SSF52540
EZH1	2145	genome.wustl.edu	37	17	40874874	40874874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001991.3	-1	validated	p.E142D	1.000	370	0%	442	36.2%	3	33.3%	benign(0.404)	tolerated(0.13)	neutral(0.383)	HMMSmart_SM00717
OSBPL7	114881	genome.wustl.edu	37	17	45897609	45897609	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145798.2	-1	reviewed	p.P12	0.003	132	0%	145	29.7%	8	37.5%	-	-	-	NULL
SPOP	8405	genome.wustl.edu	37	17	47696740	47696740	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001007226.1	-1	reviewed	p.R70*	1.000	121	0%	114	31.6%	5	20%	-	-	-	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
SPOP	8405	genome.wustl.edu	37	17	47699360	47699360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001007226.1	-1	reviewed	p.E50K	1.000	125	0%	127	26.8%	6	50%	benign(0.22)	deleterious(0.05)	neutral(0.367)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
SPAG9	9043	genome.wustl.edu	37	17	49067944	49067944	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000514613	-1	known	p.Q686R	0.912	199	0%	223	39.9%	18	27.7%	-	-	-	NULL
UTP18	51096	genome.wustl.edu	37	17	49338072	49338072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016001.2	+1	validated	p.A43T	0.965	7	0.000	18	0.278	3	66.6%	benign(0.223)	deleterious(0)	neutral(0.467)	NULL
COIL	8161	genome.wustl.edu	37	17	55038329	55038329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004645.2	-1	reviewed	p.P18S	1.000	142	0%	139	15.1%	0	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	NULL
SRSF1	6426	genome.wustl.edu	37	17	56083273	56083273	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006924.4	-1	reviewed	p.V147	1.000	150	0%	174	40.8%	203	52.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
VMP1	81671	genome.wustl.edu	37	17	57851164	57851164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_030938.3	+1	validated	p.A211E	1.000	182	0%	200	46%	14	21.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DCAF7	10238	genome.wustl.edu	37	17	61662609	61662609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000310827	+1	known	p.V259I	1.000	182	0%	182	37.4%	134	44.7%	possibly_damaging(0.919)	tolerated(0.11)	deleterious(0.641)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ABCA8	10351	genome.wustl.edu	37	17	66878067	66878067	+	Missense_Mutation	SNP	C	C	A	rs148843765		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007168.2	-1	reviewed	p.G1255C	0.000	283	0%	241	33.2%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CDC42EP4	23580	genome.wustl.edu	37	17	71282413	71282413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_012121.4	-1	reviewed	p.R76H	1.000	36	0%	55	36.4%	35	48.5%	possibly_damaging(0.87)	tolerated(0.13)	deleterious(0.591)	HMMPfam_PBD
UNK	85451	genome.wustl.edu	37	17	73820373	73820373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001080419.1	+1	provisional	p.L846I	1.000	37	0%	47	23.4%	43	46.5%	benign(0.056)	tolerated(0.39)	neutral(0.019)	NULL
LGALS3BP	3959	genome.wustl.edu	37	17	76967746	76967746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005567.3	-1	reviewed	p.S557F	0.006	37	0%	47	48.9%	2416	47.9%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ENPP7	339221	genome.wustl.edu	37	17	77709121	77709121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178543.3	+1	validated	p.R227W	0.565	52	0%	64	15.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
CBX4	8535	genome.wustl.edu	37	17	77808525	77808525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003655.2	-1	validated	p.A306T	0.008	71	0%	92	35.9%	8	37.5%	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
C17orf70	80233	genome.wustl.edu	37	17	79514274	79514274	+	Missense_Mutation	SNP	C	C	A	rs35394179		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025161.5	-1	validated	p.G461W	0.001	13	0%	21	23.8%	97	48.4%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
GPS1	2873	genome.wustl.edu	37	17	80012553	80012553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_212492.1	+1	reviewed	p.R199H	0.982	46	0%	81	32.1%	181	52.4%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_RPN7
SLC16A3	9123	genome.wustl.edu	37	17	80194609	80194609	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001042422.1	+1	validated	p.P76	0.004	74	0%	101	28.7%	186	33.3%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
UTS2R	2837	genome.wustl.edu	37	17	80332320	80332320	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_018949.1	+1	provisional	p.T40	0.000	24	0%	35	37.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CELF4	56853	genome.wustl.edu	37	18	34844715	34844715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020180.3	-1	reviewed	p.A391T	1.000	122	0%	169	39.6%	0	-	benign(0.009)	tolerated(0.07)	neutral(0.320)	superfamily_RNA-binding domain RBD
TSHZ1	10194	genome.wustl.edu	37	18	72998008	72998008	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005786.4	+1	reviewed	p.L171	1.000	35	0%	47	27.7%	33	30.3%	-	-	-	NULL
ZNF236	7776	genome.wustl.edu	37	18	74616441	74616441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_007345.3	+1	validated	p.A665V	0.560	254	0.4%	227	33%	0	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HCN2	610	genome.wustl.edu	37	19	603890	603890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001194.3	+1	validated	p.R327C	1.000	29	0%	57	45.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
ABCA7	10347	genome.wustl.edu	37	19	1051209	1051209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_019112.3	+1	reviewed	p.A914P	0.050	121	0%	158	34.2%	8	12.5%	benign(0.059)	tolerated(0.26)	neutral(0.038)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA7	10347	genome.wustl.edu	37	19	1051997	1051997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_019112.3	+1	reviewed	p.R1007C	1.000	52	0%	68	33.8%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C19orf71	100128569	genome.wustl.edu	37	19	3543846	3543846	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001135580.1	+1	validated	p.Y156	0.000	43	0%	53	34%	7	42.8%	-	-	-	NULL
ZBTB7A	51341	genome.wustl.edu	37	19	4054697	4054697	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015898.2	-1	validated	p.A178	0.924	28	0%	40	45%	4	75%	-	-	-	NULL
SAFB2	9667	genome.wustl.edu	37	19	5616281	5616281	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000415313	-1	known	p.R114*	0.856	202	0%	224	31.2%	39	38.4%	-	-	-	NULL
SMARCA4	6597	genome.wustl.edu	37	19	11145728	11145728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001128849.1	+1	reviewed	p.E1364K	1.000	47	0%	67	34.3%	345	44.9%	possibly_damaging(0.808)	tolerated(0.2)	neutral(0.353)	NULL
RAB3D	9545	genome.wustl.edu	37	19	11446353	11446353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004283.3	-1	validated	p.A112V	0.999	150	0%	195	22.6%	48	31.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ZNF791	163049	genome.wustl.edu	37	19	12738563	12738563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_153358.2	+1	validated	p.G74C	0.009	46	2.2%	38	39.5%	3	66.6%	benign(0.114)	tolerated(0.18)	neutral(0.065)	NULL
PRDX2	7001	genome.wustl.edu	37	19	12911596	12911596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_181738.1	-1	reviewed	p.P131S	0.032	119	0%	168	27.4%	1	0%	unknown(0)	deleterious(0)	-	NULL
GCDH	2639	genome.wustl.edu	37	19	13008557	13008557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000159.2	+1	reviewed	p.C375R	1.000	76	0%	107	29%	36	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
CD97	976	genome.wustl.edu	37	19	14507908	14507908	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_078481.2	+1	reviewed	p.S166	0.000	140	0%	187	35.3%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
OCEL1	79629	genome.wustl.edu	37	19	17337911	17337911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024578.1	+1	provisional	p.E119K	1.000	61	0%	85	38.8%	36	52.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
JAK3	3718	genome.wustl.edu	37	19	17945447	17945447	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000215.3	-1	reviewed	p.A761	0.988	37	0%	59	32.2%	5	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
UPF1	5976	genome.wustl.edu	37	19	18965730	18965730	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002911.3	+1	reviewed	p.S436	0.000	86	0%	120	39.2%	113	46%	-	-	-	NULL
DDX49	54555	genome.wustl.edu	37	19	19032693	19032693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_019070.4	+1	validated	p.V123M	1.000	55	0%	73	39.7%	41	46.3%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
GMIP	51291	genome.wustl.edu	37	19	19740909	19740909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016573.2	-1	reviewed	p.R926C	1.000	19	0%	35	20%	23	30.4%	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
ZNF430	80264	genome.wustl.edu	37	19	21239479	21239479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025189.3	+1	validated	p.G122D	0.002	112	0%	89	41.6%	0	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	NULL
LOC400682	400682	genome.wustl.edu	37	19	21838381	21838381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	XM_001726878.1	+1	model	p.H36Y	0.866	25	0%	31	22.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UQCRFS1	7386	genome.wustl.edu	37	19	29698487	29698487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006003.2	-1	validated	p.F265L	1.000	175	0%	181	33.7%	195	53.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Rieske,superfamily_Rieske_dom
ZNF536	9745	genome.wustl.edu	37	19	30934859	30934859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014717.1	+1	provisional	p.P131fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARHGAP33	115703	genome.wustl.edu	37	19	36279175	36279175	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_052948.3	+1	reviewed	p.R1075	0.972	8	0.000	18	0.389	5	0%	-	-	-	NULL
CLIP3	25999	genome.wustl.edu	37	19	36515405	36515405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_015526.1	-1	provisional	p.A271T	0.979	98	0%	119	29.4%	11	27.2%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
LOC400696	400696	genome.wustl.edu	37	19	40172107	40172107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_207646.2	+1	validated	p.G17D	0.014	240	0%	286	27.3%	3	0%	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
C19orf47	126526	genome.wustl.edu	37	19	40827943	40827943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_178830.2	-1	predicted	p.S305N	1.000	52	0%	66	25.8%	9	44.4%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CYP2A13	1553	genome.wustl.edu	37	19	41595953	41595953	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000766.3	+1	reviewed	p.G115	0.014	15	0%	15	53.3%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
PSG7	5676	genome.wustl.edu	37	19	43430712	43430712	+	Missense_Mutation	SNP	C	C	T	rs191942944	by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002783.2	-1	reviewed	p.R289H	0.000	311	0.6%	340	36.2%	0	-	benign(0.006)	tolerated(0.29)	neutral(0.029)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
APOC4	346	genome.wustl.edu	37	19	45445568	45445568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001646.1	+1	reviewed	p.P12S	0.000	74	0%	144	36.8%	0	-	possibly_damaging(0.771)	tolerated(0.34)	neutral(0.309)	NULL
PPP1R13L	10848	genome.wustl.edu	37	19	45889095	45889095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001142502.1	-1	validated	p.D690N	1.000	46	0%	58	32.8%	172	39.5%	unknown(0)	deleterious(0)	-	HMMPfam_Ank,superfamily_Ankyrin repeat
DMPK	1760	genome.wustl.edu	37	19	46281423	46281423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001081563.1	-1	reviewed	p.D223N	0.999	65	0%	124	25%	46	52.1%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EHD2	30846	genome.wustl.edu	37	19	48244201	48244201	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014601.3	+1	reviewed	p.L382	0.888	42	0%	55	36.4%	14	0%	-	-	-	NULL
FAM83E	54854	genome.wustl.edu	37	19	49114037	49114037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017708.3	-1	validated	p.T178M	0.969	30	0%	66	31.8%	38	60.5%	benign(0.036)	tolerated(0.08)	neutral(0.302)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
TRPM4	54795	genome.wustl.edu	37	19	49686388	49686388	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017636.2	+1	provisional	p.L554	0.000	42	0%	74	45.9%	30	50%	-	-	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50216289	50216289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152359.1	+1	provisional	p.H732N	1.000	52	0%	93	14%	5	20%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
MYH14	79784	genome.wustl.edu	37	19	50785025	50785025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001077186.1	+1	reviewed	p.D1456N	1.000	10	0%	12	50%	45	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
POLD1	5424	genome.wustl.edu	37	19	50912082	50912082	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002691.2	+1	validated	p.L606V	0.984	102	0%	138	37%	70	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
ZNF331	55422	genome.wustl.edu	37	19	54080864	54080864	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001079906.1	+1	validated	p.T350	0.134	149	0%	221	35.7%	13	38.4%	-	-	-	superfamily_SSF57667
LAIR1	3903	genome.wustl.edu	37	19	54867604	54867604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002287.3	-1	reviewed	p.V226I	0.000	184	0%	194	26.8%	11	0%	benign(0)	tolerated(0.92)	-	NULL
FIZ1	84922	genome.wustl.edu	37	19	56104854	56104854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032836.2	-1	reviewed	p.C151	0.631	15	0%	21	28.6%	5	80%	-	-	-	NULL
ZNF582	147948	genome.wustl.edu	37	19	56896148	56896148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_144690.1	-1	provisional	p.R213Q	0.000	90	0%	77	37.7%	0	-	probably_damaging(0.994)	tolerated(0.71)	neutral(0.454)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SNPH	9751	genome.wustl.edu	37	20	1281227	1281227	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014723.2	+1	reviewed	p.L60	0.765	46	0%	76	42.1%	0	-	-	-	-	NULL
TGM6	343641	genome.wustl.edu	37	20	2375961	2375961	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198994.2	+1	validated	p.L101	0.001	161	0%	205	37.6%	0	-	-	-	-	HMMPfam_Transglut_N,superfamily_E set domains
SMOX	54498	genome.wustl.edu	37	20	4163027	4163027	+	Missense_Mutation	SNP	C	C	T	rs145014650	by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_175839.1	+1	reviewed	p.R301W	0.105	40	0%	75	34.7%	7	28.5%	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
ADRA1D	146	genome.wustl.edu	37	20	4228724	4228724	+	Missense_Mutation	SNP	C	C	T	rs61759849		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000678.3	-1	reviewed	p.R294H	1.000	13	0%	13	46.2%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ESF1	51575	genome.wustl.edu	37	20	13750554	13750554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016649.3	-1	provisional	p.T506M	1.000	182	0%	121	28.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RRBP1	6238	genome.wustl.edu	37	20	17597404	17597404	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001042576.1	-1	reviewed	p.A847	0.000	111	0%	96	37.5%	198	46.4%	-	-	-	NULL
NINL	22981	genome.wustl.edu	37	20	25457292	25457292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025176.4	-1	validated	p.R879C	0.000	7	0.000	11	0.364	5	40%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
EFCAB8	388795	genome.wustl.edu	37	20	31480052	31480052	+	Missense_Mutation	SNP	G	G	A	rs62208904	byCluster;byFrequency;by1000genomes	TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000440534	+1	known	p.R236Q	0.073	225	0%	207	35.3%	0	-	possibly_damaging(0.655)	tolerated(0.41)	neutral(0.245)	superfamily_WD40 repeat-like,superfamily_EF-hand
BPIFB2	80341	genome.wustl.edu	37	20	31596456	31596456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_025227.1	+1	reviewed	p.V26M	0.925	51	0%	96	36.5%	0	-	probably_damaging(0.981)	tolerated(0.08)	deleterious(0.726)	superfamily_Bactericidal permeability-increasing protein BPI
BPIFB1	92747	genome.wustl.edu	37	20	31877773	31877773	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_033197.2	+1	reviewed	p.L114	0.993	110	0%	129	40.3%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
NCOA6	23054	genome.wustl.edu	37	20	33320380	33320380	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014071.2	-1	reviewed	p.A1994	0.992	185	0%	177	35.6%	17	70.5%	-	-	-	NULL
SLC32A1	140679	genome.wustl.edu	37	20	37356120	37356120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_080552.2	+1	reviewed	p.Y139C	1.000	16	0%	31	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
PTPRT	11122	genome.wustl.edu	37	20	41419980	41419980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_133170.3	-1	reviewed	p.R114K	1.000	131	0%	148	43.9%	0	-	benign(0.004)	deleterious(0.03)	neutral(0.364)	HMMPfam_MAM,HMMSmart_SM00137
KCNK15	60598	genome.wustl.edu	37	20	43378827	43378827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_022358.2	+1	reviewed	p.A114V	1.000	30	0%	58	37.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_SSF81324
MC3R	4159	genome.wustl.edu	37	20	54824734	54824734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_019888.3	+1	reviewed	p.A279S	0.990	359	0%	418	23.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RAE1	8480	genome.wustl.edu	37	20	55941931	55941931	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001015885.1	+1	reviewed	p.S148	1.000	356	0%	367	38.7%	20	15%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
LAMA5	3911	genome.wustl.edu	37	20	60907709	60907709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005560.3	-1	reviewed	p.A1116V	1.000	20	0%	36	38.9%	10	50%	benign(0)	tolerated(1)	-	NULL
PRIC285	85441	genome.wustl.edu	37	20	62200561	62200561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001037335.2	-1	reviewed	p.R343Q	0.905	26	0%	50	22%	2	0%	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34004016	34004016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003895.3	-1	validated	p.K1337N	1.000	272	0%	249	30.1%	1	0%	unknown(0)	deleterious(0.01)	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34012043	34012043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003895.3	-1	validated	p.A1212V	0.980	328	0%	287	31.7%	2	50%	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	NULL
GCFC1	94104	genome.wustl.edu	37	21	34127586	34127588	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	GTC	GTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016631.3	-1	reviewed	p.R487in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_GCFC
ZNF295	49854	genome.wustl.edu	37	21	43413036	43413036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001098402.1	-1	validated	p.S390I	0.000	191	0%	185	38.9%	4	50%	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
CBS	875	genome.wustl.edu	37	21	44492252	44492252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000071.2	-1	reviewed	p.R18C	0.007	41	0%	58	50%	1	0%	benign(0.339)	tolerated(0.14)	neutral(0.356)	NULL
PFKL	5211	genome.wustl.edu	37	21	45746706	45746706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002626.4	+1	reviewed	p.H768fs	0.964	-	-	-	-	-	-	-	-	-	superfamily_Phosphofructokinase
KRTAP10-4	386672	genome.wustl.edu	37	21	45994618	45994618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_198687.1	+1	reviewed	p.C328Y	0.398	100	0%	154	40.3%	0	-	unknown(0)	tolerated(0.07)	-	HMMPfam_Keratin_B2
KRTAP12-2	353323	genome.wustl.edu	37	21	46086427	46086427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_181684.2	-1	validated	p.C126Y	0.997	108	0.9%	130	37.7%	0	-	possibly_damaging(0.952)	tolerated(0.43)	neutral(0.409)	HMMPfam_Keratin_B2
IL17RA	23765	genome.wustl.edu	37	22	17589915	17589915	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014339.4	+1	reviewed	p.D602	0.110	13	0%	14	28.6%	6	16.6%	-	-	-	NULL
CECR2	27443	genome.wustl.edu	37	22	18028074	18028074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	ENST00000400573	+1	known	p.G1011S	0.045	63	0%	77	33.8%	0	-	benign(0)	tolerated(1)	-	NULL
PRAME	23532	genome.wustl.edu	37	22	22893400	22893400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_006115.3	-1	reviewed	p.L45M	0.791	34	0%	56	35.7%	123	49.5%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_RNI-like
RGL4	266747	genome.wustl.edu	37	22	24036132	24036132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_153615.1	+1	provisional	p.V295M	0.047	39	0%	55	30.9%	2	50%	possibly_damaging(0.816)	deleterious(0.02)	deleterious(0.692)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
UPB1	51733	genome.wustl.edu	37	22	24919641	24919641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_016327.2	+1	reviewed	p.S324N	0.999	118	0%	115	34.8%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	superfamily_Carbon-nitrogen hydrolase
TTC28	23331	genome.wustl.edu	37	22	28378723	28378723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001145418.1	-1	validated	p.G2311D	1.000	187	0%	155	40%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC28	23331	genome.wustl.edu	37	22	28492237	28492237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001145418.1	-1	validated	p.V1236A	1.000	257	0%	250	33.6%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
GAL3ST1	9514	genome.wustl.edu	37	22	30951763	30951763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_004861.1	-1	reviewed	p.R150H	0.981	61	0%	87	39.1%	37	32.4%	benign(0.047)	tolerated(0.2)	neutral(0.052)	HMMPfam_Gal-3-0_sulfotr
LIMK2	3985	genome.wustl.edu	37	22	31658767	31658767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001031801.1	+1	reviewed	p.R261C	1.000	82	0%	99	39.4%	25	56%	possibly_damaging(0.896)	deleterious(0.03)	deleterious(0.718)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32084183	32084183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_173566.2	-1	validated	p.E2046D	1.000	159	0%	129	31%	1	0%	possibly_damaging(0.857)	tolerated(0.07)	deleterious(0.650)	NULL
H1F0	3005	genome.wustl.edu	37	22	38201689	38201691	+	In_Frame_Del	DEL	GCG	GCG	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	GCG	GCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005318.3	+1	reviewed	p.R47in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
PLA2G6	8398	genome.wustl.edu	37	22	38528999	38528999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_003560.2	-1	reviewed	p.R306W	0.029	29	0%	57	35.1%	48	41.6%	possibly_damaging(0.529)	tolerated(0.05)	deleterious(0.524)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SERHL2	253190	genome.wustl.edu	37	22	42967190	42967190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014509.3	+1	provisional	p.A238T	0.995	279	0.4%	309	29.8%	4	0%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	superfamily_alpha/beta-Hydrolases
CELSR1	9620	genome.wustl.edu	37	22	46931221	46931221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_014246.1	-1	reviewed	p.S616N	0.001	29	0%	43	39.5%	9	44.4%	benign(0.139)	tolerated(0.06)	neutral(0.335)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CLCN4	1183	genome.wustl.edu	37	X	10180635	10180635	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001830.3	+1	reviewed	p.P506	0.171	81	0%	107	37.4%	0	-	-	-	-	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
ARHGAP6	395	genome.wustl.edu	37	X	11160423	11160423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_013427.2	-1	reviewed	p.E729D	1.000	254	0%	243	39.5%	0	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
CTPS2	56474	genome.wustl.edu	37	X	16717111	16717111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001144002.1	-1	reviewed	p.G91V	1.000	201	0%	188	40.4%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_synth_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLHL34	257240	genome.wustl.edu	37	X	21675237	21675237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_153270.1	-1	provisional	p.R224C	1.000	10	0%	19	47.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
TAB3	257397	genome.wustl.edu	37	X	30873652	30873652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_152787.3	-1	reviewed	p.R44*	1.000	35	0%	39	30.8%	2	0%	-	-	-	HMMPfam_CUE,HMMSmart_SM00546
USP9X	8239	genome.wustl.edu	37	X	41026800	41026800	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001039590.2	+1	reviewed	p.T798	0.962	284	0%	227	35.7%	3	0%	-	-	-	NULL
TBC1D25	4943	genome.wustl.edu	37	X	48418481	48418481	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002536.2	+1	validated	p.L395	0.931	29	0%	50	44%	34	0%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
GATA1	2623	genome.wustl.edu	37	X	48650810	48650810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_002049.3	+1	reviewed	p.A227T	1.000	130	0%	137	33.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CACNA1F	778	genome.wustl.edu	37	X	49062163	49062163	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_005183.2	-1	reviewed	p.L1872	0.004	70	0%	81	35.8%	0	-	-	-	-	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50350812	50350812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_020717.3	-1	reviewed	p.E1110D	0.957	36	0%	58	31%	1	0%	possibly_damaging(0.882)	tolerated(0.37)	neutral(0.363)	NULL
PJA1	64219	genome.wustl.edu	37	X	68381244	68381244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_145119.3	-1	reviewed	p.C613Y	0.961	87	0%	101	44.6%	69	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
NONO	4841	genome.wustl.edu	37	X	70516832	70516832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001145408.1	+1	reviewed	p.R293H	0.969	144	0%	206	21.4%	343	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71427502	71427502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017669.2	-1	validated	p.R372Q	0.993	173	0.6%	191	35.1%	1	100%	possibly_damaging(0.829)	tolerated(0.06)	deleterious(0.637)	HMMPfam_SNF2_N
GPRASP1	9737	genome.wustl.edu	37	X	101910660	101910662	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001099410.1	+1	reviewed	p.E610in_frame_del	0.002:0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
NKRF	55922	genome.wustl.edu	37	X	118723673	118723673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_017544.3	-1	reviewed	p.S572Y	0.994	229	0%	238	32.4%	7	0%	benign(0.24)	deleterious(0.01)	neutral(0.430)	HMMPfam_G-patch,HMMSmart_SM00443
NKAP	79576	genome.wustl.edu	37	X	119077322	119077322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_024528.3	-1	reviewed	p.R83W	0.811	79	0%	88	39.8%	8	0%	unknown(0)	deleterious(0.01)	-	NULL
CD40LG	959	genome.wustl.edu	37	X	135736571	135736571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_000074.2	+1	reviewed	p.S110C	0.000	153	0%	184	41.3%	0	-	possibly_damaging(0.502)	tolerated(0.07)	deleterious(0.487)	NULL
PDZD4	57595	genome.wustl.edu	37	X	153069506	153069506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_032512.2	-1	provisional	p.R538W	1.000	6	0.000	14	0.357	0	-	possibly_damaging(0.936)	deleterious(0.02)	deleterious(0.764)	NULL
MECP2	4204	genome.wustl.edu	37	X	153296524	153296524	+	Missense_Mutation	SNP	C	C	T	rs61750233		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001110792.1	-1	reviewed	p.G264D	0.996	42	0%	57	31.6%	3	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATP6AP1	537	genome.wustl.edu	37	X	153662052	153662052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17D-01A-12D-A12J-09	TCGA-D1-A17D-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fbf19a10-36ea-477e-9493-219a0985ef00	a6f258de-e3fc-4e59-8213-7bd0d7e2660b	NM_001183.4	+1	reviewed	p.V224I	0.131	87	0%	121	40.5%	233	0%	benign(0.013)	tolerated(0.14)	neutral(0.250)	HMMPfam_ATP-synt_S1
