Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
KLHL21	9903	genome.wustl.edu	37	1	6653713	6653713	+	Silent	SNP	A	A	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_014851.2	-1	provisional	p.H502	0.985	23	0%	14	50%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
RHCE	6006	genome.wustl.edu	37	1	25715534	25715534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_020485.3	-1	reviewed	p.P291R	0.332	151	0%	151	28.5%	-	-	benign(0.024)	deleterious(0.01)	neutral(0.407)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
LRRIQ3	127255	genome.wustl.edu	37	1	74648290	74648290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001105659.1	-1	provisional	p.H169N	0.082	57	0%	56	16.1%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	superfamily_Outer arm dynein light chain 1
GBP6	163351	genome.wustl.edu	37	1	89846010	89846010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_198460.2	+1	validated	p.R231W	0.996	53	0%	68	39.7%	-	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
DSTYK	25778	genome.wustl.edu	37	1	205138517	205138517	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_015375.2	-1	reviewed	p.H366Q	1.000	58	0%	50	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CENPF	1063	genome.wustl.edu	37	1	214828711	214828711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_016343.3	+1	reviewed	p.S2817C	0.000	31	0%	36	50%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84784863	84784863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001370.1	+1	validated	p.G536V	1.000	69	0%	64	29.7%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
TTN	7273	genome.wustl.edu	37	2	179645904	179645904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_133379.3	-1	reviewed	p.I1156T	1.000	147	0%	153	33.3%	-	-	benign(0.29)	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
POU1F1	5449	genome.wustl.edu	37	3	87322643	87322643	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001122757.1	-1	reviewed	p.P49fs	0.626	-	-	-	-	-	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_006218.2	+1	reviewed	p.H1047R	1.000	47	0%	38	34.2%	-	-	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
KIAA0232	9778	genome.wustl.edu	37	4	6865466	6865466	+	Silent	SNP	A	A	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001100590.1	+1	validated	p.G1119	0.991	79	0%	64	37.5%	-	-	-	-	-	NULL
UBA6	55236	genome.wustl.edu	37	4	68488549	68488549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_018227.5	-1	validated	p.T1008I	1.000	75	0%	66	16.7%	-	-	probably_damaging(0.981)	tolerated(0.09)	deleterious(0.722)	HMMPfam_UBA_e1_C
PDE5A	8654	genome.wustl.edu	37	4	120528172	120528172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001083.3	-1	reviewed	p.E145K	1.000	57	0%	39	15.4%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	superfamily_GAF domain-like
DMXL1	1657	genome.wustl.edu	37	5	118469995	118469995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_005509.4	+1	validated	p.V763fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_WD40 repeat-like
C6orf223	221416	genome.wustl.edu	37	6	43970504	43970509	+	In_Frame_Del	DEL	GCGGCG	GCGGCG	-	rs72369323		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	GCGGCG	GCGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_153246.4	+1	validated	p.AA127in_frame_del	0.161:0.158:0.154:0.150:0.146:0.142	-	-	-	-	-	-	-	-	-	NULL
KHDRBS2	202559	genome.wustl.edu	37	6	62887218	62887218	+	Splice_Site	SNP	C	C	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_152688.2	-1	validated	e2-1	1.000	128	0%	106	48.1%	-	-	-	-	-	-
NFE2L3	9603	genome.wustl.edu	37	7	26225140	26225142	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_004289.6	+1	reviewed	p.D609in_frame_del	0.912:0.922:0.922	-	-	-	-	-	-	-	-	-	HMMSmart_BRLZ,HMMPfam_bZIP_1
ZFHX4	79776	genome.wustl.edu	37	8	77768163	77768163	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_024721.4	+1	validated	p.T2957	0.160	28	0%	10	50%	-	-	-	-	-	NULL
FAM171A1	221061	genome.wustl.edu	37	10	15326012	15326012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001010924.1	-1	validated	p.A64T	0.977	29	0%	23	34.8%	-	-	benign(0.35)	tolerated(0.1)	neutral(0.397)	HMMPfam_UPF0560
OR52I1	390037	genome.wustl.edu	37	11	4616176	4616176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001005169.1	+1	validated	p.Q303R	0.823	57	0%	27	22.2%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_SSF81321
PRMT3	10196	genome.wustl.edu	37	11	20483698	20483699	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_005788.3	+1	validated	p.C416fs	0.836:0.853	-	-	-	-	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
KCNA4	3739	genome.wustl.edu	37	11	30033831	30033833	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_002233.2	-1	reviewed	p.E135in_frame_del	0.994:0.998:0.996	-	-	-	-	-	-	-	-	-	NULL
OR10G4	390264	genome.wustl.edu	37	11	123886941	123886941	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001004462.1	+1	provisional	p.I220	0.010	288	0%	228	36.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CHD4	1108	genome.wustl.edu	37	12	6702721	6702721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001273.2	-1	reviewed	p.R792Q	1.000	53	0%	53	50.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FKBP11	51303	genome.wustl.edu	37	12	49319159	49319161	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_016594.2	-1	validated	p.L18in_frame_del	0.923:0.961:0.998	-	-	-	-	-	-	-	-	-	NULL
ENSG00000250952	0	genome.wustl.edu	37	12	49998331	49998333	+	RNA	DEL	AGC	AGC	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	ENST00000508736	+1	novel	NULL	0.000:0.001:0.000	-	-	-	-	-	-	-	-	-	-
CDX2	1045	genome.wustl.edu	37	13	28537404	28537404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001265.3	-1	validated	p.P264S	0.002	94	0%	57	45.6%	-	-	unknown(0)	tolerated(0.79)	-	NULL
SERPINA9	327657	genome.wustl.edu	37	14	94929444	94929444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_175739.3	-1	validated	p.P432T	0.995	28	0%	40	52.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
AK7	122481	genome.wustl.edu	37	14	96864452	96864452	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_152327.2	+1	validated	p.I49S	0.615	54	0%	53	37.7%	-	-	benign(0.085)	tolerated(0.69)	neutral(0.008)	NULL
DISP2	85455	genome.wustl.edu	37	15	40657448	40657448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_033510.1	+1	reviewed	p.Q274E	0.823	20	0.000	7	0.714	-	-	benign(0.001)	tolerated(1)	-	NULL
CNGB1	1258	genome.wustl.edu	37	16	57921890	57921890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001297.4	-1	reviewed	p.A1111T	0.977	45	0%	35	22.9%	-	-	probably_damaging(0.99)	tolerated(0.21)	deleterious(0.485)	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71976800	71976800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	ENST00000335106	-1	known	p.Q1327H	0.041	58	0%	35	42.9%	-	-	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7579505	7579506	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_000546.4	-1	reviewed	p.D61fs	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
LOC646021	646021	genome.wustl.edu	37	17	29349042	29349042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	XM_933339.3	+1	model	p.P274Q	1.000	12	0%	16	25%	-	-	-	-	-	NULL
HNF1B	6928	genome.wustl.edu	37	17	36070545	36070555	+	Frame_Shift_Del	DEL	GGGTCCAGGCT	GGGTCCAGGCT	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	GGGTCCAGGCT	GGGTCCAGGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_000458.2	-1	reviewed	p.S388fs	0.986:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_HNF-1B_C
COASY	80347	genome.wustl.edu	37	17	40716556	40716556	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001042532.2	+1	validated	p.R366fs	0.550	-	-	-	-	-	-	-	-	-	HMMPfam_CTP_transf_2,superfamily_SSF52374
OTOP2	92736	genome.wustl.edu	37	17	72927021	72927021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_178160.2	+1	validated	p.G431R	0.000	39	0%	20	75%	-	-	benign(0.08)	tolerated(0.17)	neutral(0.065)	NULL
TBCD	6904	genome.wustl.edu	37	17	80886996	80886996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_005993.4	+1	reviewed	p.R901C	0.785	45	0%	29	13.8%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_ARM repeat
CNDP2	55748	genome.wustl.edu	37	18	72183482	72183482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_018235.2	+1	validated	p.R308Q	0.995	38	0%	24	16.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187
PLEKHJ1	55111	genome.wustl.edu	37	19	2234193	2234193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_018049.1	-1	provisional	p.S92R	0.240	27	0%	16	25%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ENSG00000196686	0	genome.wustl.edu	37	19	21607879	21607882	+	RNA	DEL	TAAT	TAAT	-	rs34723025	byCluster;by1000genomes	TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	TAAT	TAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	ENST00000341265	-1	novel	NULL	0.746:0.785:0.823:0.825	-	-	-	-	-	-	-	-	-	-
ZNF780A	284323	genome.wustl.edu	37	19	40580460	40580460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001142577.1	-1	validated	p.R631H	0.001	93	0%	74	50%	-	-	benign(0.027)	tolerated(0.12)	neutral(0.262)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PPP2R1A	5518	genome.wustl.edu	37	19	52715971	52715971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_014225.5	+1	reviewed	p.P179R	1.000	33	0%	31	80.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
TMX4	56255	genome.wustl.edu	37	20	7990897	7990897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_021156.2	-1	provisional	p.G81V	1.000	76	0%	115	24.3%	-	-	probably_damaging(0.978)	tolerated(0.05)	deleterious(0.766)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
ZNF512B	57473	genome.wustl.edu	37	20	62597492	62597583	+	Frame_Shift_Del	DEL	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	-	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_020713.1	-1	provisional	p.G338fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.876:0.891:0.876:0.798:0.992:0.992:0.998:0.979:0.997:0.998:0.996:0.984:0.941:0.944:0.898:0.000	-	-	-	-	-	-	-	-	-	NULL
KCNE1	3753	genome.wustl.edu	37	21	35821640	35821640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_000219.3	-1	reviewed	p.R98Q	0.935	24	0%	14	42.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ISK_Channel
PLAC4	191585	genome.wustl.edu	37	21	42551117	42551117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_182832.2	-1	provisional	p.H147D	0.997	395	0%	247	27.1%	-	-	-	-	-	NULL
CARD10	29775	genome.wustl.edu	37	22	37906308	37906309	+	In_Frame_Ins	INS	-	-	CTCCTT	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_014550.3	-1	reviewed	p.273in_frame_insKE	0.840:0.939	-	-	-	-	-	-	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	31525491	31525491	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_004006.2	-1	reviewed	p.L2766Q	0.711	141	0%	152	36.2%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ZMYM3	9203	genome.wustl.edu	37	X	70465836	70465836	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_005096.3	-1	reviewed	p.P895	1.000	57	0%	42	47.6%	-	-	-	-	-	NULL
DRP2	1821	genome.wustl.edu	37	X	100486680	100486680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2D2-01A-11D-A17D-09	TCGA-FI-A2D2-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51cf6fdd-5d58-478c-a967-9f9b5c165751	2b19d629-877e-4080-b238-bfedb9cfa250	NM_001939.2	+1	reviewed	p.R15Q	1.000	79	0%	65	35.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
