Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CCDC30	728621	genome.wustl.edu	37	1	43076715	43076715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001080850.2	+1	validated	p.R484C	0.000	304	0%	393	33.8%	-	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
TM2D1	83941	genome.wustl.edu	37	1	62190783	62190783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_032027.2	-1	reviewed	p.A4S	0.000	18	0%	17	47.1%	-	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
BCAN	63827	genome.wustl.edu	37	1	156628347	156628347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_021948.3	+1	validated	p.P817L	0.870	31	0%	64	29.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
DISP1	84976	genome.wustl.edu	37	1	223178728	223178728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_032890.2	+1	reviewed	p.T1330M	0.924	31	0%	36	38.9%	-	-	benign(0.014)	deleterious(0.04)	neutral(0.349)	NULL
C2orf44	80304	genome.wustl.edu	37	2	24261607	24261607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_025203.2	-1	validated	p.V253G	0.001	118	0%	140	37.9%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
GTDC1	79712	genome.wustl.edu	37	2	144709580	144709580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001006636.3	-1	validated	p.R421I	1.000	351	0%	177	39%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SF3B1	23451	genome.wustl.edu	37	2	198281473	198281473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_012433.2	-1	reviewed	p.Q220K	1.000	208	0.5%	122	38.5%	-	-	benign(0.001)	tolerated(0.98)	-	NULL
DGKQ	1609	genome.wustl.edu	37	4	959940	959940	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	ENST00000502309	-1	known	p.A135	0.000	13	0%	28	39.3%	-	-	-	-	-	NULL
EXOC3	11336	genome.wustl.edu	37	5	447672	447672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_007277.4	+1	reviewed	p.G57R	1.000	28	0%	70	34.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591143	67591146	+	Frame_Shift_Del	DEL	AATA	AATA	-	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	AATA	AATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_181523.1	+1	reviewed	p.Q579fs	1.000:0.989:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591148	67591149	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_181523.1	+1	reviewed	p.L581fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RHOBTB3	22836	genome.wustl.edu	37	5	95091417	95091417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_014899.3	+1	validated	p.A334T	0.707	387	0%	257	31.1%	-	-	benign(0.01)	tolerated(0.9)	neutral(0.001)	HMMSmart_BTB
PCDHB6	56130	genome.wustl.edu	37	5	140531371	140531371	+	Silent	SNP	G	G	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_018939.2	+1	reviewed	p.L511	0.114	109	0%	232	39.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140563276	140563276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_020957.1	+1	reviewed	p.T381M	0.002	126	0%	306	38.9%	-	-	benign(0.001)	tolerated(0.75)	neutral(0.002)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140625590	140625590	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_018935.2	+1	reviewed	p.L148	0.011	55	0%	144	35.4%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
IRGM	345611	genome.wustl.edu	37	5	150227777	150227777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001145805.1	+1	validated	p.R31K	0.000	113	0%	192	38.5%	-	-	benign(0)	tolerated(0.92)	-	HMMPfam_IIGP,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNTG1	54212	genome.wustl.edu	37	8	51362262	51362262	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_018967.2	+1	reviewed	p.S85*	1.000	291	0%	158	39.2%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
GPT	2875	genome.wustl.edu	37	8	145730784	145730784	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_005309.2	+1	reviewed	p.D217	0.584	13	0%	26	46.2%	-	-	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
SH2D3C	10044	genome.wustl.edu	37	9	130513581	130513581	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_170600.2	-1	validated	e4-2	1.000	100	0%	215	39.1%	-	-	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89690801	89690801	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	ENST00000371953	+1	known	e4-2	1.000	218	0%	75	34.7%	-	-	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89711896	89711896	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	ENST00000371953	+1	known	p.R172fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
GBF1	8729	genome.wustl.edu	37	10	104142011	104142011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_004193.1	+1	provisional	p.A1833V	1.000	96	1%	168	33.9%	-	-	possibly_damaging(0.643)	tolerated(0.32)	neutral(0.249)	NULL
NFKB2	4791	genome.wustl.edu	37	10	104160207	104160207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001077494.1	+1	validated	p.A586V	0.000	31	0%	95	42.1%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
OR5M11	219487	genome.wustl.edu	37	11	56310149	56310149	+	Missense_Mutation	SNP	C	C	A	rs144332728	by1000genomes	TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001005245.1	-1	provisional	p.E195D	0.247	97	0%	64	18.8%	-	-	possibly_damaging(0.498)	deleterious(0.01)	deleterious(0.572)	HMMPfam_7tm_1,superfamily_SSF81321
ZBTB16	7704	genome.wustl.edu	37	11	114118017	114118017	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001018011.1	+1	reviewed	p.Y574	0.974	86	0%	161	39.8%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHD4	1108	genome.wustl.edu	37	12	6702279	6702279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001273.2	-1	reviewed	p.R877Q	1.000	116	0%	144	41%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL2	8085	genome.wustl.edu	37	12	49435229	49435229	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_003482.3	-1	validated	p.P2108	0.972	33	0%	45	44.4%	-	-	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52183141	52183142	+	Frame_Shift_Ins	INS	-	-	CTTCACC	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_014191.2	+1	reviewed	p.L1457fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TGDS	23483	genome.wustl.edu	37	13	95229656	95229656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_014305.2	-1	validated	p.M285V	1.000	209	0%	86	48.8%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_NAD(P)-binding Rossmann-fold domains
TRIM9	114088	genome.wustl.edu	37	14	51448776	51448776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_015163.5	-1	reviewed	p.I550N	1.000	156	0%	116	33.6%	-	-	possibly_damaging(0.782)	tolerated(0.21)	neutral(0.337)	superfamily_Concanavalin A-like lectins/glucanases
UBR1	197131	genome.wustl.edu	37	15	43329975	43329975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_174916.2	-1	reviewed	p.S673I	1.000	149	0%	105	41.9%	-	-	benign(0.091)	deleterious(0)	neutral(0.451)	NULL
STOML1	9399	genome.wustl.edu	37	15	74277004	74277004	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_004809.3	-1	provisional	p.T333	0.143	42	0%	109	42.2%	-	-	-	-	-	HMMPfam_SCP2,superfamily_Sterol carrier protein SCP
CHRNB4	1143	genome.wustl.edu	37	15	78921917	78921917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_000750.3	-1	validated	p.V244M	0.988	535	0%	838	37.8%	-	-	possibly_damaging(0.833)	tolerated(0.21)	neutral(0.361)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CDH1	999	genome.wustl.edu	37	16	68862107	68862107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_004360.3	+1	reviewed	p.R732Q	1.000	403	0.5%	350	38%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Cadherin_C
KLHL11	55175	genome.wustl.edu	37	17	40011489	40011489	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_018143.1	-1	provisional	p.S210	1.000	77	0%	110	39.1%	-	-	-	-	-	HMMPfam_BACK
GPATCH8	23131	genome.wustl.edu	37	17	42477332	42477332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001002909.1	-1	validated	p.G705W	0.998	490	0%	586	39.8%	-	-	unknown(0)	deleterious(0.01)	-	NULL
PHOSPHO1	162466	genome.wustl.edu	37	17	47302390	47302392	+	In_Frame_Del	DEL	AGG	AGG	-	rs146708566	by1000genomes	TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001143804.1	-1	validated	p.S32in_frame_del	0.092:0.143:0.249	-	-	-	-	-	-	-	-	-	NULL
LOC729602	729602	genome.wustl.edu	37	18	11621276	11621276	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	XM_002344140.1	-1	model	p.C154*	0.227	467	0%	571	34.9%	-	-	-	-	-	HMMPfam_NPIP
TGIF2	60436	genome.wustl.edu	37	20	35219567	35219567	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_021809.5	+1	reviewed	p.G149	0.997	79	0%	62	43.5%	-	-	-	-	-	NULL
KCNQ2	3785	genome.wustl.edu	37	20	62038258	62038258	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_172107.2	-1	reviewed	p.T786	0.865	22	0%	41	41.5%	-	-	-	-	-	NULL
CELSR1	9620	genome.wustl.edu	37	22	46932115	46932115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_014246.1	-1	reviewed	p.T318M	1.000	69	0%	147	40.1%	-	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
EIF2S3	1968	genome.wustl.edu	37	X	24073092	24073092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	NM_001415.3	+1	reviewed	p.G3S	1.000	131	0%	278	46.4%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
MIR513B	100313822	genome.wustl.edu	37	X	146280564	146280564	+	RNA	SNP	C	C	A	novel		TCGA-AX-A06L-01A-11D-A122-09	TCGA-AX-A06L-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44470392-800a-472e-befe-b2ea579cb78c	b7f68d14-4673-4879-8456-acf101b7bf4a	ENST00000385136	-1	known	NULL	0.075	331	0%	210	23.3%	-	-	-	-	-	-
