Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ATAD3C	219293	genome.wustl.edu	37	1	1403858	1403858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039211.2	+1	validated	p.R395H	1.000	6	0.000	14	0.429	0	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	NULL
ATAD3B	83858	genome.wustl.edu	37	1	1430951	1430951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031921.4	+1	provisional	p.Q567H	1.000	11	0.000	9	0.667	34	0%	benign(0.201)	deleterious(0.03)	neutral(0.384)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1751	85452	genome.wustl.edu	37	1	1897818	1897818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080484.1	-1	predicted	p.P465S	0.228	27	0%	28	35.7%	1	0%	benign(0.01)	tolerated(1)	neutral(0.001)	NULL
PRKCZ	5590	genome.wustl.edu	37	1	2105386	2105386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002744.4	+1	reviewed	p.A446T	1.000	27	0%	25	32%	45	0%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PANK4	55229	genome.wustl.edu	37	1	2453201	2453201	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018216.1	-1	reviewed	p.Q55*	0.998	13	0%	14	42.9%	20	0%	-	-	-	HMMPfam_Fumble
NPHP4	261734	genome.wustl.edu	37	1	5927923	5927923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015102.2	-1	reviewed	p.A1117T	1.000	40	0%	45	11.1%	13	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NPHP4	261734	genome.wustl.edu	37	1	5933329	5933329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015102.2	-1	reviewed	p.P1100S	0.241	56	0%	42	50%	14	0%	benign(0.01)	tolerated(0.06)	neutral(0.323)	NULL
NPHP4	261734	genome.wustl.edu	37	1	5933353	5933353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015102.2	-1	reviewed	p.S1092P	0.000	50	0%	48	33.3%	15	0%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
CHD5	26038	genome.wustl.edu	37	1	6203920	6203920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015557.1	-1	provisional	p.D669V	0.054	34	0%	37	16.2%	0	-	benign(0.013)	tolerated(0.19)	neutral(0.050)	superfamily_SSF52540
TAS1R1	80835	genome.wustl.edu	37	1	6634990	6634990	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000411823	+1	known	p.P192L	0.000	41	0%	28	46.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CAMTA1	23261	genome.wustl.edu	37	1	7797424	7797424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015215.1	+1	validated	p.A1151V	1.000	84	0%	79	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
VAMP3	9341	genome.wustl.edu	37	1	7837336	7837336	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004781.3	+1	reviewed	p.S63	0.974	39	0%	66	13.6%	41	0%	-	-	-	HMMPfam_Synaptobrevin
PER3	8863	genome.wustl.edu	37	1	7886636	7886636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016831.1	+1	reviewed	p.A677V	0.028	123	0%	167	16.2%	9	0%	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	NULL
RERE	473	genome.wustl.edu	37	1	8421857	8421857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042681.1	-1	reviewed	p.A661V	0.928	71	0%	68	29.4%	56	0%	unknown(0)	tolerated(0.08)	-	HMMPfam_Atrophin-1
RERE	473	genome.wustl.edu	37	1	8684438	8684438	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000514428	-1	known	p.T1I	1.000	352	0%	362	27.9%	23	0%	-	-	-	NULL
H6PD	9563	genome.wustl.edu	37	1	9324214	9324214	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004285.3	+1	reviewed	p.P554	0.011	35	0%	57	24.6%	13	0%	-	-	-	superfamily_SSF100950
UBE4B	10277	genome.wustl.edu	37	1	10155592	10155592	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105562.1	+1	reviewed	p.T95	0.006	143	0%	138	34.1%	16	0%	-	-	-	NULL
UBE4B	10277	genome.wustl.edu	37	1	10195147	10195147	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105562.1	+1	reviewed	p.T709	0.483	74	0%	104	19.2%	39	0%	-	-	-	HMMPfam_Ufd2P_core
UBE4B	10277	genome.wustl.edu	37	1	10218427	10218427	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105562.1	+1	reviewed	p.T980	0.295	211	0%	240	13.3%	29	0%	-	-	-	HMMPfam_Ufd2P_core
TARDBP	23435	genome.wustl.edu	37	1	11080584	11080584	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007375.3	+1	reviewed	p.Y214	0.627	93	0%	180	25.6%	202	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
EXOSC10	5394	genome.wustl.edu	37	1	11137471	11137471	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001998.1	-1	validated	p.H610	0.848	48	0%	82	11%	61	0%	-	-	-	NULL
MTOR	2475	genome.wustl.edu	37	1	11168337	11168337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004958.3	-1	reviewed	p.D2512G	1.000	76	0%	82	15.9%	82	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNFRSF8	943	genome.wustl.edu	37	1	12144535	12144535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001243.3	+1	reviewed	p.E26D	0.000	127	0%	163	25.8%	0	-	benign(0.301)	tolerated(0.65)	neutral(0.096)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12403086	12403086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015378.2	+1	reviewed	p.A2955T	1.000	96	0%	127	25.2%	2	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12567075	12567075	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000011700	+1	known	p.C3143Y	1.000	153	0%	131	30.5%	37	0%	-	-	-	NULL
DHRS3	9249	genome.wustl.edu	37	1	12628377	12628377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004753.4	-1	validated	p.R301W	1.000	117	0%	77	20.8%	148	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PRAMEF1	65121	genome.wustl.edu	37	1	12854480	12854480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023013.1	+1	provisional	p.R235H	0.000	655	0.3%	800	32.8%	0	-	benign(0.016)	deleterious(0.03)	neutral(0.365)	superfamily_SSF52047
PRAMEF2	65122	genome.wustl.edu	37	1	12919080	12919080	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023014.1	+1	provisional	p.T72	0.086	310	0%	306	27.8%	0	-	-	-	-	superfamily_SSF52047
PRAMEF2	65122	genome.wustl.edu	37	1	12921372	12921372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023014.1	+1	provisional	p.C388Y	0.000	620	0%	838	20.2%	0	-	benign(0.158)	tolerated(0.19)	neutral(0.064)	superfamily_SSF52047
PRDM2	7799	genome.wustl.edu	37	1	14106627	14106627	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012231.4	+1	reviewed	p.S779	0.973	173	0%	257	16.7%	12	0%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16258679	16258679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015001.2	+1	reviewed	p.R1982W	0.623	89	0%	115	27%	15	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPEN	23013	genome.wustl.edu	37	1	16260963	16260963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015001.2	+1	reviewed	p.A2743V	0.388	74	0%	80	10%	7	0%	unknown(0)	deleterious(0.02)	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16261065	16261065	+	Missense_Mutation	SNP	C	C	T	rs181891870	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015001.2	+1	reviewed	p.A2777V	0.029	52	0%	65	12.3%	23	0%	unknown(0)	tolerated(0.08)	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16262537	16262537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015001.2	+1	reviewed	p.R3268C	1.000	56	0%	52	11.5%	7	0%	unknown(0)	deleterious(0)	-	NULL
ZBTB17	7709	genome.wustl.edu	37	1	16269942	16269942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003443.2	-1	validated	p.R550H	1.000	18	0%	15	40%	74	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPHA2	1969	genome.wustl.edu	37	1	16459688	16459688	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004431.3	-1	reviewed	p.G680	0.753	36	0%	46	32.6%	65	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
EPHA2	1969	genome.wustl.edu	37	1	16464769	16464769	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004431.3	-1	reviewed	e4+1	1.000	13	0%	22	31.8%	0	-	-	-	-	-
ARHGEF19	128272	genome.wustl.edu	37	1	16525157	16525157	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153213.3	-1	provisional	p.S778	0.929	132	0%	154	36.4%	114	0%	-	-	-	superfamily_SH3-domain
RSG1	79363	genome.wustl.edu	37	1	16560223	16560223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030907.3	-1	validated	p.S50F	1.000	39	0%	39	33.3%	3	0%	unknown(0)	-	-	NULL
C1orf144	26099	genome.wustl.edu	37	1	16721696	16721696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000434120	+1	known	p.R139Q	0.998	31	0%	29	13.8%	115	0%	unknown(0)	deleterious(0)	-	NULL
MST1P9	11223	genome.wustl.edu	37	1	17086973	17086973	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_002729.2	-1	validated	NULL	0.726	42	0%	71	18.3%	1	0%	-	-	-	-
SDHB	6390	genome.wustl.edu	37	1	17349180	17349180	+	Missense_Mutation	SNP	G	G	A	rs138996609	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003000.2	-1	reviewed	p.R230C	1.000	29	0%	255	9.8%	215	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_alpha-helical ferredoxin
PADI3	51702	genome.wustl.edu	37	1	17593214	17593214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016233.2	+1	reviewed	p.R137W	0.853	52	0%	46	30.4%	0	-	possibly_damaging(0.783)	deleterious(0.02)	deleterious(0.676)	HMMPfam_PAD_M,superfamily_PAD_central
PADI3	51702	genome.wustl.edu	37	1	17607184	17607184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016233.2	+1	reviewed	p.R552C	1.000	117	0%	106	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAD,superfamily_SSF55909
ACTL8	81569	genome.wustl.edu	37	1	18152404	18152404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030812.2	+1	validated	p.R164H	0.003	41	0%	30	26.7%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
PAX7	5081	genome.wustl.edu	37	1	18962753	18962753	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002584.2	+1	reviewed	p.R158	0.986	40	0%	79	35.4%	0	-	-	-	-	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
TAS1R2	80834	genome.wustl.edu	37	1	19166293	19166293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152232.2	-1	validated	p.V774I	0.330	38	0%	33	21.2%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_3
TAS1R2	80834	genome.wustl.edu	37	1	19166377	19166377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152232.2	-1	validated	p.A746T	0.994	39	0%	50	36%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_3
TAS1R2	80834	genome.wustl.edu	37	1	19166566	19166566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152232.2	-1	validated	p.A683T	0.098	65	0%	82	20.7%	0	-	possibly_damaging(0.67)	tolerated(0.1)	deleterious(0.524)	HMMPfam_7tm_3
MIR1290	100302276	genome.wustl.edu	37	1	19223633	19223633	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408735	-1	known	NULL	0.003	11	0%	26	46.2%	0	-	-	-	-	-
UBR4	23352	genome.wustl.edu	37	1	19404482	19404482	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020765.2	-1	validated	p.Y5104	1.000	61	0%	60	21.7%	106	0%	-	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19430631	19430631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020765.2	-1	validated	p.L4283P	1.000	229	0%	285	27.7%	68	0%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19444359	19444359	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020765.2	-1	validated	p.S3529	1.000	169	0%	153	34%	23	0%	-	-	-	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19453122	19453122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020765.2	-1	validated	p.A3086S	0.999	147	0%	224	18.8%	28	0%	probably_damaging(0.971)	tolerated(0.07)	deleterious(0.732)	NULL
RNF186	54546	genome.wustl.edu	37	1	20141384	20141384	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019062.1	-1	provisional	p.L71	1.000	40	0%	50	40%	1	0%	-	-	-	HMMSmart_RING,superfamily_SSF57850
KIF17	57576	genome.wustl.edu	37	1	21009205	21009205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020816.2	-1	validated	p.D802N	1.000	135	0%	125	25.6%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
HP1BP3	50809	genome.wustl.edu	37	1	21106308	21106308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016287.3	-1	validated	p.P65S	0.999	12	0%	31	19.4%	127	0%	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
RAP1GAP	5909	genome.wustl.edu	37	1	21936701	21936701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145658.1	-1	validated	p.F368S	1.000	43	0%	42	14.3%	40	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
HSPG2	3339	genome.wustl.edu	37	1	22176666	22176666	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005529.5	-1	reviewed	p.G2418S	0.855	39	0%	26	50%	22	0%	-	-	-	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22832622	22832622	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083621.1	+1	validated	p.T416	0.636	98	0%	115	31.3%	6	0%	-	-	-	NULL
C1QC	714	genome.wustl.edu	37	1	22974051	22974051	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114101.1	+1	reviewed	p.H171	0.906	143	0%	111	43.2%	167	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
EPHB2	2048	genome.wustl.edu	37	1	23234607	23234607	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004442.6	+1	reviewed	p.G767	0.998	93	0%	77	33.8%	15	6.6%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDM1A	23028	genome.wustl.edu	37	1	23405541	23405541	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015013.3	+1	reviewed	p.C618	0.636	294	0%	283	29.3%	243	0%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
LUZP1	7798	genome.wustl.edu	37	1	23418083	23418083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142546.1	-1	reviewed	p.S891N	0.998	284	0%	291	27.5%	17	0%	benign(0.052)	tolerated(0.16)	neutral(0.062)	NULL
LUZP1	7798	genome.wustl.edu	37	1	23420681	23420681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142546.1	-1	reviewed	p.R25H	1.000	225	0%	223	26.9%	4	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CortBP2
TCEA3	6920	genome.wustl.edu	37	1	23710901	23710901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003196.1	-1	validated	p.R326C	0.998	448	0%	290	28.3%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFIIS_C,HMMSmart_SM00440,PatternScan_ZF_TFIIS_1,superfamily_Zinc beta-ribbon
ASAP3	55616	genome.wustl.edu	37	1	23759634	23759634	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017707.3	-1	reviewed	p.P753	0.860	79	1.3%	97	16.5%	8	0%	-	-	-	NULL
MYOM3	127294	genome.wustl.edu	37	1	24408672	24408672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152372.3	-1	validated	p.P700L	0.994	13	0%	29	37.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IL28RA	163702	genome.wustl.edu	37	1	24483701	24483701	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170743.2	-1	reviewed	p.S494	0.000	147	0%	109	12.8%	9	0%	-	-	-	NULL
RCAN3	11123	genome.wustl.edu	37	1	24861759	24861759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013441.2	+1	validated	p.A240T	0.011	42	0%	63	47.6%	25	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
SRRM1	10250	genome.wustl.edu	37	1	24995828	24995828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005839.3	+1	validated	p.R652C	1.000	321	0%	360	27.5%	154	0%	unknown(0)	deleterious(0)	-	NULL
CLIC4	25932	genome.wustl.edu	37	1	25124325	25124325	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013943.2	+1	reviewed	p.T55	0.983	26	0%	49	16.3%	77	0%	-	-	-	superfamily_Thioredoxin-like
RHD	6007	genome.wustl.edu	37	1	25611169	25611169	+	Missense_Mutation	SNP	C	C	T	rs78305203		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016124.3	+1	reviewed	p.A85V	0.922	26	0%	56	33.9%	0	-	benign(0.013)	tolerated(0.08)	neutral(0.300)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
TMEM57	55219	genome.wustl.edu	37	1	25812268	25812268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018202.4	+1	validated	p.A493V	1.000	161	0%	206	17.5%	71	0%	benign(0.082)	tolerated(0.12)	neutral(0.267)	superfamily_Prefoldin,HMMPfam_Macoilin
SLC30A2	7780	genome.wustl.edu	37	1	26368239	26368239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004434.1	-1	validated	p.G264W	1.000	42	0%	37	29.7%	0	-	probably_damaging(0.989)	tolerated(0.18)	deleterious(0.495)	HMMPfam_Cation_efflux
UBXN11	91544	genome.wustl.edu	37	1	26608889	26608889	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183008.2	-1	reviewed	p.G488	0.001	15	0%	10	40%	21	4.7%	-	-	-	NULL
PIGV	55650	genome.wustl.edu	37	1	27120733	27120733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017837.2	+1	validated	p.H70Y	1.000	33	0%	69	24.6%	6	0%	benign(0.078)	tolerated(1)	neutral(0.005)	HMMPfam_Mannosyl_trans2
FAM46B	115572	genome.wustl.edu	37	1	27332835	27332835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052943.3	-1	validated	p.R293Q	0.001	7	0.000	10	0.500	12	0%	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_DUF1693
FAM46B	115572	genome.wustl.edu	37	1	27333043	27333043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052943.3	-1	validated	p.D224N	1.000	20	0%	37	21.6%	11	0%	possibly_damaging(0.8)	deleterious(0.03)	deleterious(0.665)	HMMPfam_DUF1693
SLC9A1	6548	genome.wustl.edu	37	1	27428590	27428590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003047.3	-1	validated	p.R618C	1.000	18	0%	26	23.1%	47	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MAP3K6	9064	genome.wustl.edu	37	1	27683961	27683961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004672.3	-1	reviewed	p.Q1063R	0.718	7	0.000	13	0.692	11	0%	possibly_damaging(0.785)	tolerated(0.14)	deleterious(0.543)	NULL
WASF2	10163	genome.wustl.edu	37	1	27742485	27742485	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006990.2	-1	reviewed	p.K177	1.000	204	0%	292	14.7%	56	0%	-	-	-	NULL
AHDC1	27245	genome.wustl.edu	37	1	27874673	27874673	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029882.2	-1	validated	p.S1318	0.952	29	0%	26	34.6%	29	0%	-	-	-	NULL
AHDC1	27245	genome.wustl.edu	37	1	27876400	27876400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029882.2	-1	validated	p.R743W	0.996	16	0%	29	41.4%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMPDL3B	27293	genome.wustl.edu	37	1	28285040	28285040	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014474.2	+1	validated	p.P353	0.000	44	0%	40	10%	64	0%	-	-	-	NULL
SMPDL3B	27293	genome.wustl.edu	37	1	28285153	28285153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014474.2	+1	validated	p.R391H	1.000	34	0%	33	30.3%	62	0%	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	NULL
MED18	54797	genome.wustl.edu	37	1	28661303	28661303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127350.1	+1	validated	p.R150H	1.000	70	0%	160	36.2%	29	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Med18
TRNAU1AP	54952	genome.wustl.edu	37	1	28887186	28887186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017846.4	+1	validated	p.A56V	1.000	57	0%	61	42.6%	31	0%	possibly_damaging(0.9)	tolerated(0.08)	deleterious(0.656)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
YTHDF2	51441	genome.wustl.edu	37	1	29069960	29069960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016258.2	+1	reviewed	p.R393Q	1.000	66	0%	104	26%	148	0%	possibly_damaging(0.648)	tolerated(0.12)	deleterious(0.488)	NULL
SRSF4	6429	genome.wustl.edu	37	1	29481413	29481413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005626.4	-1	reviewed	p.R125C	1.000	99	0%	102	10.8%	150	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
MECR	51102	genome.wustl.edu	37	1	29533399	29533399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016011.2	-1	validated	p.A142V	0.999	39	0%	69	23.2%	42	0%	benign(0.026)	tolerated(0.08)	neutral(0.301)	superfamily_GroES-like,HMMPfam_ADH_N
PTPRU	10076	genome.wustl.edu	37	1	29585263	29585263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005704.3	+1	reviewed	p.S151N	1.000	38	0%	84	32.1%	8	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_MAM,HMMSmart_SM00137
PTPRU	10076	genome.wustl.edu	37	1	29606138	29606138	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005704.3	+1	reviewed	p.A578	0.944	83	0%	69	21.7%	14	0%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
PTPRU	10076	genome.wustl.edu	37	1	29641957	29641957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005704.3	+1	reviewed	p.V1111M	1.000	54	0%	40	20%	30	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PUM1	9698	genome.wustl.edu	37	1	31532179	31532179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001020658.1	-1	reviewed	p.A79T	1.000	66	0%	128	34.4%	29	0%	benign(0.144)	deleterious(0)	neutral(0.457)	NULL
COL16A1	1307	genome.wustl.edu	37	1	32151733	32151733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001856.3	-1	reviewed	p.P615S	0.001	54	0%	49	16.3%	13	0%	unknown(0)	tolerated(0.9)	-	HMMPfam_Collagen
COL16A1	1307	genome.wustl.edu	37	1	32158222	32158222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001856.3	-1	reviewed	p.E379K	1.000	39	0%	41	26.8%	14	0%	unknown(0)	tolerated(0.12)	-	HMMPfam_Collagen
BAI2	576	genome.wustl.edu	37	1	32193073	32193073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001703.2	-1	reviewed	p.A1569V	0.437	20	0%	24	20.8%	5	0%	benign(0.004)	tolerated(0.26)	neutral(0.034)	NULL
BAI2	576	genome.wustl.edu	37	1	32210256	32210256	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001703.2	-1	reviewed	p.A305	0.716	25	0%	41	34.1%	1	0%	-	-	-	NULL
YARS	8565	genome.wustl.edu	37	1	33276604	33276604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003680.3	-1	reviewed	p.I38L	0.998	353	0%	715	14.5%	70	0%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
ADC	113451	genome.wustl.edu	37	1	33585651	33585651	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052998.2	+1	validated	p.A417	0.001	112	0%	113	43.4%	7	0%	-	-	-	superfamily_Alanine racemase C-terminal domain-like
ZNF362	149076	genome.wustl.edu	37	1	33760850	33760850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152493.2	+1	validated	p.A364T	0.999	23	0%	28	28.6%	36	0%	possibly_damaging(0.807)	tolerated(1)	neutral(0.304)	NULL
ZSCAN20	7579	genome.wustl.edu	37	1	33958952	33958952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145238.3	+1	validated	p.R537H	1.000	108	0%	128	31.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00717
CSMD2	114784	genome.wustl.edu	37	1	34068035	34068035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052896.3	-1	validated	p.G2217D	1.000	26	0%	21	23.8%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34076819	34076819	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052896.3	-1	validated	p.T2015	0.158	99	0%	103	30.1%	1	0%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34286079	34286079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052896.3	-1	validated	p.S357L	1.000	372	0%	320	15.9%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C1orf212	113444	genome.wustl.edu	37	1	35321099	35321099	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138428.5	-1	validated	p.A61	0.000	62	0%	104	32.7%	61	0%	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35496146	35496146	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007167.3	-1	validated	e1+2	1.000	136	0%	236	35.2%	0	-	-	-	-	-
TFAP2E	339488	genome.wustl.edu	37	1	36056327	36056327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178548.3	+1	validated	p.A333T	0.055	18	0%	29	27.6%	1	0%	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_TF_AP-2
EIF2C4	192670	genome.wustl.edu	37	1	36288535	36288535	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017629.2	+1	reviewed	p.G86	0.998	125	0%	228	14%	6	0%	-	-	-	superfamily_PAZ domain
EIF2C4	192670	genome.wustl.edu	37	1	36290940	36290940	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017629.2	+1	reviewed	p.G111	0.785	265	0%	324	28.7%	10	10%	-	-	-	superfamily_PAZ domain
TEKT2	27285	genome.wustl.edu	37	1	36553587	36553587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014466.2	+1	reviewed	p.A365T	0.999	5	0.000	11	0.545	15	0%	possibly_damaging(0.914)	deleterious(0.04)	deleterious(0.715)	HMMPfam_Tektin
ADPRHL2	54936	genome.wustl.edu	37	1	36557223	36557223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017825.2	+1	reviewed	p.A105T	1.000	52	0%	46	26.1%	54	0%	benign(0.028)	tolerated(0.42)	neutral(0.015)	HMMPfam_ADP_ribosyl_GH,superfamily_Ribosyl_crysJ1
STK40	83931	genome.wustl.edu	37	1	36807526	36807526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032017.1	-1	provisional	p.R380C	1.000	23	0%	27	29.6%	50	0%	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	NULL
GRIK3	2899	genome.wustl.edu	37	1	37271783	37271783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000831.3	-1	reviewed	p.V746I	1.000	98	1%	89	36%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
ZC3H12A	80149	genome.wustl.edu	37	1	37948533	37948533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025079.2	+1	validated	p.C374Y	0.006	17	0%	26	26.9%	6	0%	benign(0.263)	tolerated(0.24)	neutral(0.065)	NULL
MEAF6	64769	genome.wustl.edu	37	1	37967578	37967578	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022756.4	-1	provisional	p.T120	0.328	90	0%	130	33.1%	75	0%	-	-	-	NULL
EPHA10	284656	genome.wustl.edu	37	1	38197200	38197200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099439.1	-1	validated	p.V516I	0.982	143	0.7%	215	12.6%	0	-	benign(0.133)	tolerated(0.7)	neutral(0.013)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MANEAL	149175	genome.wustl.edu	37	1	38265839	38265839	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113482.1	+1	validated	p.E446	1.000	41	0%	57	31.6%	8	0%	-	-	-	NULL
MTF1	4520	genome.wustl.edu	37	1	38281133	38281133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005955.2	-1	reviewed	p.A646V	0.938	24	0%	33	33.3%	4	0%	benign(0.003)	tolerated(0.2)	neutral(0.049)	NULL
SF3A3	10946	genome.wustl.edu	37	1	38444495	38444495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006802.2	-1	reviewed	p.L278I	1.000	13	0%	34	23.5%	120	0%	possibly_damaging(0.942)	tolerated(0.14)	deleterious(0.637)	NULL
RHBDL2	54933	genome.wustl.edu	37	1	39381378	39381378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017821.3	-1	reviewed	p.A84V	0.997	122	0%	141	20.6%	2	0%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
MACF1	23499	genome.wustl.edu	37	1	39788374	39788374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012090.3	+1	reviewed	p.A1380V	1.000	94	0%	131	11.5%	4	0%	benign(0.017)	tolerated(0.09)	neutral(0.297)	HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39799008	39799008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033044.2	+1	reviewed	p.A690T	0.001	190	0%	195	29.7%	0	-	benign(0.006)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39853302	39853302	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033044.2	+1	reviewed	p.R3370*	0.990	65	0%	116	14.7%	12	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
OXCT2	64064	genome.wustl.edu	37	1	40236268	40236268	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022120.1	-1	provisional	p.N220	0.902	34	0%	47	42.6%	0	-	-	-	-	HMMPfam_CoA_trans,superfamily_SSF100950
PPT1	5538	genome.wustl.edu	37	1	40546147	40546147	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000310.3	-1	reviewed	p.A183	0.892	275	0.4%	214	28.5%	89	0%	-	-	-	HMMPfam_Palm_thioest,superfamily_alpha/beta-Hydrolases
SCMH1	22955	genome.wustl.edu	37	1	41494256	41494256	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031694.2	-1	validated	p.H619	0.946	141	0%	143	11.2%	93	1%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
HIVEP3	59269	genome.wustl.edu	37	1	42048521	42048521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024503.3	-1	validated	p.A650T	1.000	241	0%	176	33.5%	0	-	probably_damaging(0.999)	tolerated(0.63)	deleterious(0.494)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FOXJ3	22887	genome.wustl.edu	37	1	42645484	42645484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014947.3	-1	validated	p.A589V	1.000	156	0%	154	34.4%	34	0%	benign(0.378)	tolerated(0.7)	neutral(0.122)	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42730851	42730851	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014947.3	-1	validated	p.R127*	1.000	329	0%	342	13.2%	15	0%	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"
RIMKLA	284716	genome.wustl.edu	37	1	42865151	42865151	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173642.3	+1	validated	p.Q80	1.000	39	0%	51	33.3%	10	0%	-	-	-	NULL
PPIH	10465	genome.wustl.edu	37	1	43131652	43131652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006347.3	+1	reviewed	p.A113V	1.000	128	0%	202	31.7%	177	0%	benign(0.143)	tolerated(0.08)	neutral(0.312)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
WDR65	149465	genome.wustl.edu	37	1	43672498	43672498	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152498.3	+1	validated	p.C550	0.768	173	0%	237	13.5%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
TIE1	7075	genome.wustl.edu	37	1	43777409	43777409	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005424.2	+1	provisional	p.P467	0.085	47	0%	62	25.8%	6	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CDC20	991	genome.wustl.edu	37	1	43826614	43826614	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001255.2	+1	reviewed	p.Q353	1.000	13	0%	41	36.6%	349	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SZT2	23334	genome.wustl.edu	37	1	43891182	43891182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015284.2	+1	predicted	p.A53T	1.000	205	0%	180	30.6%	1	0%	possibly_damaging(0.842)	tolerated(0.44)	neutral(0.335)	NULL
SZT2	23334	genome.wustl.edu	37	1	43908188	43908188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015284.2	+1	predicted	p.W1785R	1.000	79	1.3%	95	29.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44084747	44084747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002840.3	+1	reviewed	p.R1507H	1.000	68	0%	65	27.7%	314	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRF	5792	genome.wustl.edu	37	1	44086156	44086156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002840.3	+1	reviewed	p.R1757H	1.000	56	0%	74	18.9%	426	0.2%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ST3GAL3	6487	genome.wustl.edu	37	1	44365342	44365342	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174963.2	+1	reviewed	p.A298	0.344	47	0%	31	19.4%	0	-	-	-	-	HMMPfam_Glyco_transf_29
DMAP1	55929	genome.wustl.edu	37	1	44684319	44684319	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001034023.1	+1	reviewed	p.N204	0.884	114	0.9%	141	30.5%	51	0%	-	-	-	NULL
TMEM53	79639	genome.wustl.edu	37	1	45120376	45120376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024587.2	-1	provisional	p.R230H	0.965	91	0%	106	14.2%	5	0%	benign(0.005)	tolerated(0.12)	neutral(0.261)	HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases
KIF2C	11004	genome.wustl.edu	37	1	45226268	45226268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006845.3	+1	validated	p.C526Y	1.000	22	0%	32	18.8%	55	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF2C	11004	genome.wustl.edu	37	1	45228107	45228107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006845.3	+1	validated	p.A614V	0.001	34	0%	52	30.8%	68	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
PLK3	1263	genome.wustl.edu	37	1	45268491	45268491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004073.2	+1	validated	p.G238D	1.000	27	0%	47	27.7%	9	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HECTD3	79654	genome.wustl.edu	37	1	45475700	45475700	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024602.5	-1	validated	p.S239	1.000	95	0%	90	12.2%	26	0%	-	-	-	HMMPfam_APC10,superfamily_Galactose-binding domain-like
HECTD3	79654	genome.wustl.edu	37	1	45475763	45475763	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024602.5	-1	validated	p.C218	1.000	83	0%	95	33.7%	25	0%	-	-	-	superfamily_Galactose-binding domain-like
TOE1	114034	genome.wustl.edu	37	1	45808083	45808083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025077.3	+1	validated	p.R174W	0.992	113	0%	142	26.8%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAF1,superfamily_RNaseH_fold
MAST2	23139	genome.wustl.edu	37	1	46476461	46476461	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015112.2	+1	validated	p.S346	0.253	76	0%	130	41.5%	26	0%	-	-	-	HMMPfam_DUF1908
MAST2	23139	genome.wustl.edu	37	1	46488982	46488982	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015112.2	+1	validated	p.G521	0.993	117	0%	111	33.3%	20	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAST2	23139	genome.wustl.edu	37	1	46496749	46496749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015112.2	+1	validated	p.R927*	1.000	54	0%	27	44.4%	23	0%	-	-	-	NULL
NSUN4	387338	genome.wustl.edu	37	1	46826407	46826407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199044.2	+1	validated	p.R262H	1.000	94	0%	160	28.1%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DMBX1	127343	genome.wustl.edu	37	1	46972737	46972737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_147192.2	+1	reviewed	p.A19T	1.000	51	0%	61	36.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KNCN	148930	genome.wustl.edu	37	1	47016853	47016853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001097611.1	-1	provisional	p.G12D	1.000	47	0%	38	13.2%	0	-	possibly_damaging(0.563)	tolerated(0.09)	deleterious(0.489)	NULL
MOB3C	148932	genome.wustl.edu	37	1	47075751	47075751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145279.4	-1	reviewed	p.V234I	1.000	83	0%	137	23.4%	6	0%	benign(0.013)	tolerated(0.07)	neutral(0.320)	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein
MOB3C	148932	genome.wustl.edu	37	1	47078757	47078757	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145279.4	-1	reviewed	p.A131	0.004	17	0%	37	40.5%	2	0%	-	-	-	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein
CYP4B1	1580	genome.wustl.edu	37	1	47279204	47279204	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099772.1	+1	reviewed	p.C182	0.257	72	0%	54	29.6%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4X1	260293	genome.wustl.edu	37	1	47501570	47501570	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178033.1	+1	reviewed	p.C195	0.997	171	0%	219	25.1%	39	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP4X1	260293	genome.wustl.edu	37	1	47501843	47501843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178033.1	+1	reviewed	p.D259Y	1.000	262	0%	261	15.3%	24	0%	possibly_damaging(0.849)	deleterious(0.01)	deleterious(0.732)	HMMPfam_p450,superfamily_Cytochrome P450
STIL	6491	genome.wustl.edu	37	1	47746066	47746066	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001048166.1	-1	reviewed	p.P688	0.000	256	0.4%	324	34%	17	0%	-	-	-	NULL
STIL	6491	genome.wustl.edu	37	1	47759168	47759168	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001048166.1	-1	reviewed	p.C278	1.000	240	0%	269	33.8%	9	0%	-	-	-	NULL
TTC39A	22996	genome.wustl.edu	37	1	51756242	51756242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144832.1	-1	validated	p.T445M	1.000	40	0%	43	27.9%	17	0%	possibly_damaging(0.477)	tolerated(0.25)	neutral(0.195)	HMMPfam_Deme6,superfamily_SSF48452
EPS15	2060	genome.wustl.edu	37	1	51831687	51831688	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001981.2	-1	reviewed	p.A711fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
BTF3L4	91408	genome.wustl.edu	37	1	52525558	52525558	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152265.3	+1	validated	p.V13	1.000	87	0%	111	27.9%	73	0%	-	-	-	NULL
ORC1	4998	genome.wustl.edu	37	1	52847417	52847417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004153.2	-1	reviewed	p.C677Y	1.000	83	0%	106	28.3%	16	0%	benign(0.025)	deleterious(0)	neutral(0.446)	HMMSmart_AAA,superfamily_SSF52540
SELRC1	65260	genome.wustl.edu	37	1	53153792	53153792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023077.2	-1	validated	p.A99V	1.000	63	0%	71	14.1%	34	2.9%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
SCP2	6342	genome.wustl.edu	37	1	53413742	53413742	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002979.3	+1	reviewed	p.G63	1.000	216	0%	198	30.8%	17	0%	-	-	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
SCP2	6342	genome.wustl.edu	37	1	53453714	53453714	+	Silent	SNP	G	G	A	rs7538935	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002979.3	+1	reviewed	p.T329	0.201	105	1%	131	35.1%	26	0%	-	-	-	HMMPfam_Thiolase_C,superfamily_Thiolase-like
PODN	127435	genome.wustl.edu	37	1	53542944	53542944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153703.3	+1	validated	p.L270F	1.000	37	0%	26	30.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF52058
SLC1A7	6512	genome.wustl.edu	37	1	53558444	53558444	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006671.4	-1	validated	p.G271	1.000	55	0%	21	33.3%	0	-	-	-	-	HMMPfam_SDF
TCEANC2	127428	genome.wustl.edu	37	1	54562051	54562051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153035.1	+1	predicted	p.L178M	1.000	91	0%	99	18.2%	7	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PARS2	25973	genome.wustl.edu	37	1	55223974	55223974	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152268.3	-1	validated	p.L287	0.000	112	0%	202	25.2%	4	0%	-	-	-	superfamily_Class II aaRS and biotin synthetases
USP24	23358	genome.wustl.edu	37	1	55603256	55603256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015306.2	-1	validated	p.A885S	0.997	115	0%	110	14.5%	8	0%	benign(0.013)	tolerated(0.75)	neutral(0.002)	superfamily_Ubiquitin-like
C8A	731	genome.wustl.edu	37	1	57378115	57378115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000562.2	+1	reviewed	p.G474W	0.961	46	0%	51	15.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MACPF,HMMSmart_MACPF
C8B	732	genome.wustl.edu	37	1	57411715	57411715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000066.2	-1	reviewed	p.A295V	0.989	107	0.9%	190	36.3%	0	-	possibly_damaging(0.876)	tolerated(1)	neutral(0.341)	HMMPfam_MACPF,HMMSmart_SM00457
FGGY	55277	genome.wustl.edu	37	1	59811936	59811936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113411.1	+1	validated	p.V111I	0.089	118	0%	164	41.5%	3	0%	benign(0)	tolerated(1)	-	HMMPfam_FGGY_N,superfamily_SSF53067
NFIA	4774	genome.wustl.edu	37	1	61872302	61872302	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145512.1	+1	reviewed	p.P486	0.579	24	0%	23	43.5%	39	0%	-	-	-	HMMPfam_CTF_NFI
INADL	10207	genome.wustl.edu	37	1	62330025	62330025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_176877.2	+1	reviewed	p.E852G	1.000	178	0%	230	38.3%	13	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ITGB3BP	23421	genome.wustl.edu	37	1	63920561	63920561	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014288.3	-1	provisional	p.Q111	1.000	59	0%	51	29.4%	43	0%	-	-	-	HMMPfam_NRIF3
ROR1	4919	genome.wustl.edu	37	1	64644351	64644351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005012.2	+1	validated	p.S876F	1.000	46	0%	91	9.9%	9	0%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
JAK1	3716	genome.wustl.edu	37	1	65348959	65348959	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002227.2	-1	reviewed	e2+1	1.000	84	0%	107	25.2%	0	-	-	-	-	-
DNAJC6	9829	genome.wustl.edu	37	1	65851514	65851514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014787.2	+1	validated	p.G250E	1.000	181	0%	167	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
DNAJC6	9829	genome.wustl.edu	37	1	65858333	65858333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014787.2	+1	validated	p.A506V	0.000	47	0%	63	15.9%	0	-	benign(0.014)	tolerated(0.33)	neutral(0.025)	NULL
DNAJC6	9829	genome.wustl.edu	37	1	65864506	65864506	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014787.2	+1	validated	p.T626	0.587	137	0%	219	30.1%	0	-	-	-	-	NULL
MIER1	57708	genome.wustl.edu	37	1	67423747	67423747	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020948.3	+1	validated	p.G86	0.329	127	0%	151	32.5%	18	0%	-	-	-	NULL
IL23R	149233	genome.wustl.edu	37	1	67666567	67666567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144701.2	+1	reviewed	p.H213Q	0.834	222	0%	298	35.2%	0	-	benign(0.006)	tolerated(0.33)	neutral(0.024)	superfamily_Fibronectin type III
PTGER3	5733	genome.wustl.edu	37	1	71331467	71331467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000370934	-1	known	p.A385V	0.005	462	0%	480	35.6%	0	-	benign(0.079)	-	-	NULL
NEGR1	257194	genome.wustl.edu	37	1	72400820	72400820	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173808.2	-1	validated	p.T117	0.969	72	0%	88	21.6%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ACADM	34	genome.wustl.edu	37	1	76227042	76227042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127328.1	+1	reviewed	p.A398V	1.000	100	0%	91	33%	67	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
RABGGTB	5876	genome.wustl.edu	37	1	76259853	76259853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004582.2	+1	provisional	p.R264C	1.000	367	0%	372	15.1%	180	0.5%	benign(0.045)	tolerated(0.1)	neutral(0.289)	HMMPfam_Prenyltrans,superfamily_Terpenoid cyclases/Protein prenyltransferases
ZZZ3	26009	genome.wustl.edu	37	1	78046740	78046740	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015534.4	-1	provisional	p.R641	1.000	171	0%	221	12.7%	15	0%	-	-	-	NULL
PTGFR	5737	genome.wustl.edu	37	1	79002279	79002279	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000959.3	+1	reviewed	p.S329	0.954	230	0%	195	37.9%	0	-	-	-	-	NULL
LPHN2	23266	genome.wustl.edu	37	1	82408795	82408795	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000449420	+1	known	p.P48L	0.054	182	0%	187	24.6%	31	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
LPHN2	23266	genome.wustl.edu	37	1	82431756	82431756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012302.2	+1	reviewed	p.V661I	1.000	245	0%	241	32.4%	22	0%	possibly_damaging(0.498)	tolerated(0.27)	neutral(0.200)	NULL
TTLL7	79739	genome.wustl.edu	37	1	84408289	84408289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024686.4	-1	validated	p.P194S	1.000	97	0%	82	42.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
WDR63	126820	genome.wustl.edu	37	1	85595718	85595718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145172.3	+1	validated	p.E819K	0.999	269	0%	357	30.5%	1	0%	benign(0.019)	tolerated(0.16)	neutral(0.060)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85647934	85647934	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032184.1	-1	validated	p.Q797	1.000	63	0%	91	17.6%	3	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CLCA1	1179	genome.wustl.edu	37	1	86961245	86961245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001285.3	+1	reviewed	p.T667M	0.195	110	0%	80	32.5%	0	-	possibly_damaging(0.771)	tolerated(0.06)	deleterious(0.609)	NULL
CLCA4	22802	genome.wustl.edu	37	1	87040256	87040256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012128.3	+1	reviewed	p.A501T	0.000	200	0%	183	18%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_DUF1973
HS2ST1	9653	genome.wustl.edu	37	1	87569270	87569270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012262.3	+1	reviewed	p.T281I	1.000	158	0%	145	26.2%	55	0%	benign(0.342)	tolerated(0.13)	neutral(0.360)	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases
GTF2B	2959	genome.wustl.edu	37	1	89323128	89323128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001514.5	-1	reviewed	p.R193Q	1.000	110	0%	114	29.8%	59	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMSmart_SM00385,superfamily_Cyclin-like
GTF2B	2959	genome.wustl.edu	37	1	89329791	89329791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001514.5	-1	reviewed	p.R44Q	1.000	128	0%	141	22.7%	84	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon
RBMXL1	494115	genome.wustl.edu	37	1	89448371	89448371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000321792	-1	known	p.R380Q	1.000	120	0%	180	31.7%	46	0%	unknown(0)	deleterious(0)	-	NULL
GBP1	2633	genome.wustl.edu	37	1	89522749	89522749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002053.2	-1	validated	p.A315T	1.000	158	0%	125	26.4%	18	0%	benign(0.328)	tolerated(0.05)	neutral(0.448)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP1	2633	genome.wustl.edu	37	1	89522792	89522792	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002053.2	-1	validated	p.Y300	0.063	138	0%	108	36.1%	20	0%	-	-	-	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP2	2634	genome.wustl.edu	37	1	89586899	89586899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004120.3	-1	reviewed	p.C82Y	1.000	449	0%	653	15%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GBP,superfamily_SSF52540
LRRC8B	23507	genome.wustl.edu	37	1	90049255	90049255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134476.1	+1	validated	p.A349V	0.957	251	0%	219	32%	13	0%	benign(0.245)	tolerated(0.14)	neutral(0.275)	NULL
LRRC8B	23507	genome.wustl.edu	37	1	90049357	90049357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134476.1	+1	validated	p.R383H	1.000	208	0%	173	27.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC8C	84230	genome.wustl.edu	37	1	90152057	90152057	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032270.4	+1	validated	p.Q9*	1.000	137	0%	93	31.2%	1	0%	-	-	-	NULL
LRRC8C	84230	genome.wustl.edu	37	1	90179104	90179104	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032270.4	+1	validated	p.C325	1.000	279	0%	257	38.5%	1	0%	-	-	-	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90399877	90399877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134479.1	+1	validated	p.A417V	1.000	118	0%	134	35.8%	72	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPHX4	253152	genome.wustl.edu	37	1	92528676	92528676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173567.4	+1	validated	p.A308T	1.000	222	0%	227	25.6%	8	0%	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
RPAP2	79871	genome.wustl.edu	37	1	92789059	92789059	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000370343	+1	known	p.I194	0.993	267	0%	311	10.9%	22	0%	-	-	-	NULL
RPAP2	79871	genome.wustl.edu	37	1	92799003	92799003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000370343	+1	known	p.R504H	1.000	125	0%	143	18.2%	35	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC18	343099	genome.wustl.edu	37	1	93649649	93649649	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206886.2	+1	validated	p.N201	0.278	187	0%	245	27.8%	2	0%	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94528158	94528158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000350.2	-1	reviewed	p.P638S	1.000	57	0%	57	36.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DPYD	1806	genome.wustl.edu	37	1	98348924	98348924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000110.3	-1	reviewed	p.L16M	1.000	131	0%	109	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Helical_ferredxn
LPPR5	163404	genome.wustl.edu	37	1	99418744	99418744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037317.1	-1	reviewed	p.T168I	0.975	213	0%	157	13.4%	0	-	benign(0.008)	tolerated(0.19)	neutral(0.050)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
RTCD1	8634	genome.wustl.edu	37	1	100741175	100741175	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130841.1	+1	validated	p.A225	0.583	90	1.1%	102	25.5%	77	0%	-	-	-	HMMPfam_RTC,superfamily_RNA 3'-terminal phosphate cyclase RPTC insert domain,superfamily_EPT/RTPC-like,HMMPfam_RTC_insert
VCAM1	7412	genome.wustl.edu	37	1	101194835	101194835	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001078.2	+1	reviewed	p.T367	0.123	164	0%	193	30.6%	17	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OLFM3	118427	genome.wustl.edu	37	1	102270455	102270455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_058170.2	-1	validated	p.S239N	1.000	110	0%	151	13.2%	0	-	benign(0.019)	tolerated(0.21)	neutral(0.045)	HMMPfam_OLF,HMMSmart_SM00284
COL11A1	1301	genome.wustl.edu	37	1	103488330	103488330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080629.2	-1	reviewed	p.V417L	1.000	161	0%	175	19.4%	0	-	unknown(0)	tolerated(1)	-	NULL
PRPF38B	55119	genome.wustl.edu	37	1	109241947	109241947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018061.2	+1	validated	p.R316*	1.000	276	0%	363	38.8%	55	0%	-	-	-	NULL
PRPF38B	55119	genome.wustl.edu	37	1	109242232	109242232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018061.2	+1	validated	p.R411W	0.999	62	0%	139	29.5%	85	0%	unknown(0)	deleterious(0)	-	NULL
FNDC7	163479	genome.wustl.edu	37	1	109271412	109271412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144937.1	+1	provisional	p.R510W	0.000	96	0%	128	37.5%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMSmart_SM00060,superfamily_Fibronectin type III
WDR47	22911	genome.wustl.edu	37	1	109525353	109525353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142550.1	-1	validated	p.A723V	1.000	305	0%	523	31.7%	20	0%	benign(0.002)	tolerated(1)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
KIAA1324	57535	genome.wustl.edu	37	1	109716353	109716353	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020775.3	+1	validated	p.T282	0.036	117	0%	165	15.2%	71	0%	-	-	-	superfamily_Growth factor receptor domain
CELSR2	1952	genome.wustl.edu	37	1	109811377	109811377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001408.2	+1	reviewed	p.P2165S	1.000	45	0%	58	20.7%	33	0%	possibly_damaging(0.943)	tolerated(0.07)	deleterious(0.707)	NULL
EPS8L3	79574	genome.wustl.edu	37	1	110301202	110301202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139053.1	-1	reviewed	p.R183H	0.009	57	0%	47	44.7%	0	-	benign(0.188)	tolerated(0.13)	neutral(0.270)	NULL
CSF1	1435	genome.wustl.edu	37	1	110459982	110459982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000757.4	+1	validated	p.R98H	1.000	272	0%	371	28.3%	12	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CSF-1,superfamily_4-helical cytokines
AHCYL1	10768	genome.wustl.edu	37	1	110557410	110557410	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006621.4	+1	validated	p.G202	0.987	46	0%	37	37.8%	74	0%	-	-	-	HMMPfam_AdoHcyase,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
SLC6A17	388662	genome.wustl.edu	37	1	110740737	110740737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010898.2	+1	validated	p.A619T	1.000	22	0%	23	34.8%	0	-	benign(0.043)	deleterious(0.05)	neutral(0.348)	HMMPfam_SNF
SLC6A17	388662	genome.wustl.edu	37	1	110740933	110740933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010898.2	+1	validated	p.A684V	0.996	30	0%	47	36.2%	1	0%	benign(0)	tolerated(1)	-	NULL
PROK1	84432	genome.wustl.edu	37	1	110996588	110996588	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032414.2	+1	validated	p.C26	0.999	54	0%	39	15.4%	0	-	-	-	-	HMMPfam_Prokineticin,superfamily_SSF57190
CD53	963	genome.wustl.edu	37	1	111435121	111435121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000560.3	+1	reviewed	p.G73D	1.000	252	0%	229	28.8%	25	0%	unknown(0)	deleterious(0)	-	HMMPfam_Tetraspannin,PatternScan_TM4_1
DRAM2	128338	genome.wustl.edu	37	1	111667444	111667444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178454.4	-1	validated	p.V87I	0.000	167	0%	229	29.7%	31	0%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Frag1
CEPT1	10390	genome.wustl.edu	37	1	111703876	111703876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007794.1	+1	reviewed	p.A196V	1.000	230	0%	281	30.2%	21	0%	benign(0.043)	deleterious(0.03)	neutral(0.367)	HMMPfam_CDP-OH_P_transf
KCND3	3752	genome.wustl.edu	37	1	112323392	112323392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004980.3	-1	reviewed	p.R431C	1.000	33	0%	28	35.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCND3	3752	genome.wustl.edu	37	1	112524738	112524738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004980.3	-1	reviewed	p.T204M	1.000	13	0%	29	44.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
LRIG2	9860	genome.wustl.edu	37	1	113657106	113657106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014813.1	+1	provisional	p.A713V	0.999	121	0%	113	15%	7	0%	possibly_damaging(0.476)	tolerated(1)	neutral(0.157)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LRIG2	9860	genome.wustl.edu	37	1	113659057	113659057	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014813.1	+1	provisional	p.D893	0.948	75	0%	96	28.1%	8	0%	-	-	-	NULL
PTPN22	26191	genome.wustl.edu	37	1	114402011	114402011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015967.4	-1	reviewed	p.K53N	1.000	255	0%	316	32.9%	0	-	benign(0.067)	tolerated(0.11)	neutral(0.276)	HMMSmart_PTPc,superfamily_SSF52799
AP4B1	10717	genome.wustl.edu	37	1	114443859	114443859	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006594.2	-1	validated	p.R206*	1.000	188	0%	238	26.1%	43	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
TRIM33	51592	genome.wustl.edu	37	1	114944075	114944075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015906.3	-1	reviewed	p.R968H	1.000	68	0%	80	26.3%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
AMPD1	270	genome.wustl.edu	37	1	115226906	115226906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000036.2	-1	reviewed	p.S154L	1.000	159	0%	202	40.1%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
CSDE1	7812	genome.wustl.edu	37	1	115262240	115262240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130523.1	-1	validated	p.R741C	1.000	306	0%	305	34.4%	979	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
VANGL1	81839	genome.wustl.edu	37	1	116206790	116206790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138959.2	+1	reviewed	p.I238N	1.000	60	0%	48	25%	17	0%	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	HMMPfam_Strabismus
MAB21L3	126868	genome.wustl.edu	37	1	116670258	116670258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152367.2	+1	validated	p.C218Y	0.991	91	0%	90	34.4%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
IGSF3	3321	genome.wustl.edu	37	1	117122062	117122062	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001542.2	-1	validated	p.L1116	0.994	116	0%	115	35.7%	14	0%	-	-	-	HMMSmart_IG
PTGFRN	5738	genome.wustl.edu	37	1	117484664	117484664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020440.2	+1	provisional	p.A126V	1.000	53	0%	95	20%	14	0%	probably_damaging(0.989)	tolerated(0.2)	deleterious(0.488)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD101	9398	genome.wustl.edu	37	1	117556234	117556234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004258.3	+1	validated	p.L350F	0.974	115	0%	100	39%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
TRIM45	80263	genome.wustl.edu	37	1	117659238	117659238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025188.3	-1	reviewed	p.S451I	1.000	294	0%	257	30%	28	0%	benign(0.325)	tolerated(0.08)	neutral(0.401)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
WDR3	10885	genome.wustl.edu	37	1	118477191	118477191	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006784.2	+1	reviewed	p.I89	0.998	217	0%	195	37.4%	26	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR3	10885	genome.wustl.edu	37	1	118494926	118494926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006784.2	+1	reviewed	p.M637I	1.000	186	0.5%	201	16.9%	38	0%	possibly_damaging(0.916)	deleterious(0.05)	deleterious(0.712)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SPAG17	200162	genome.wustl.edu	37	1	118635883	118635883	+	Missense_Mutation	SNP	C	C	T	rs183758503	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206996.2	-1	validated	p.D357N	1.000	87	0%	121	33.1%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
HAO2	51179	genome.wustl.edu	37	1	119923746	119923746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005783.1	+1	reviewed	p.A13V	0.985	229	0%	271	28.4%	0	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
RBM8A	9939	genome.wustl.edu	37	1	145509207	145509207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005105.2	+1	reviewed	p.R174H	1.000	96	0%	343	21.3%	379	0%	unknown(0)	deleterious(0)	-	superfamily_RNA-binding domain RBD
ANKRD35	148741	genome.wustl.edu	37	1	145562584	145562584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144698.3	+1	validated	p.R758W	0.973	7	0.000	27	0.259	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIAS3	10401	genome.wustl.edu	37	1	145578428	145578428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006099.3	+1	reviewed	p.P131S	1.000	265	0%	737	14%	62	0%	benign(0.183)	tolerated(0.31)	neutral(0.044)	NULL
POLR3C	10623	genome.wustl.edu	37	1	145601614	145601614	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006468.6	-1	provisional	p.S264	0.782	120	0%	399	20.1%	75	0%	-	-	-	HMMPfam_RNA_pol_Rpc82
PDZK1	5174	genome.wustl.edu	37	1	145762128	145762128	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002614.3	+1	provisional	p.P435	0.676	391	0%	572	13.1%	8	0%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
LOC100132184	100132184	genome.wustl.edu	37	1	146392616	146392616	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342117.1	-1	model	p.T26	0.474	23	0%	67	14.9%	0	-	-	-	-	HMMPfam_Profilin,superfamily_Profilin (actin-binding protein)
BCL9	607	genome.wustl.edu	37	1	147094224	147094224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004326.2	+1	reviewed	p.P1019S	1.000	303	0%	612	19.4%	31	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACP6	51205	genome.wustl.edu	37	1	147119276	147119276	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016361.3	-1	validated	p.Y412*	0.984	348	0%	649	19.1%	20	0%	-	-	-	superfamily_Phosphoglycerate mutase-like
SV2A	9900	genome.wustl.edu	37	1	149883479	149883479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014849.3	-1	validated	p.A226T	1.000	88	0%	209	15.8%	3	0%	possibly_damaging(0.873)	deleterious(0.01)	deleterious(0.745)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
OTUD7B	56957	genome.wustl.edu	37	1	149915802	149915802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020205.2	-1	validated	p.R829M	1.000	291	0%	393	20.6%	18	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
ENSG00000238526	0	genome.wustl.edu	37	1	150234140	150234140	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000458929	+1	novel	NULL	0.013	18	0%	51	17.6%	0	-	-	-	-	-
PRPF3	9129	genome.wustl.edu	37	1	150300833	150300833	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004698.2	+1	reviewed	p.R111*	1.000	201	0%	544	16.7%	44	0%	-	-	-	NULL
PRPF3	9129	genome.wustl.edu	37	1	150307507	150307507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004698.2	+1	reviewed	p.R277H	1.000	58	0%	156	23.1%	47	0%	probably_damaging(0.957)	tolerated(0.54)	neutral(0.408)	NULL
CTSS	1520	genome.wustl.edu	37	1	150722592	150722592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004079.3	-1	reviewed	p.T228I	0.000	85	0%	220	23.6%	39	0%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
LOC100289153	100289153	genome.wustl.edu	37	1	150769217	150769217	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342134.1	+1	model	p.S50	0.000	142	0%	377	19.4%	46	0%	-	-	-	NULL
SETDB1	9869	genome.wustl.edu	37	1	150936157	150936157	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145415.1	+1	reviewed	p.G1203	0.324	183	0%	624	17.5%	91	0%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ANXA9	8416	genome.wustl.edu	37	1	150960781	150960781	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003568.2	+1	validated	p.P272	0.553	42	0%	124	21.8%	0	-	-	-	-	superfamily_Annexin
FAM63A	55793	genome.wustl.edu	37	1	150974841	150974841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018379.4	-1	validated	p.L85M	0.000	65	0%	134	14.9%	6	0%	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
LYSMD1	388695	genome.wustl.edu	37	1	151134348	151134348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_212551.4	-1	validated	p.V137I	0.004	209	0%	556	19.2%	19	0%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
PIP5K1A	8394	genome.wustl.edu	37	1	151214603	151214603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135638.1	+1	validated	p.K456N	1.000	439	0%	978	16.8%	52	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PI4KB	5298	genome.wustl.edu	37	1	151265387	151265387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002651.1	-1	provisional	p.R810W	1.000	31	0%	63	20.6%	109	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
SELENBP1	8991	genome.wustl.edu	37	1	151337741	151337741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003944.2	-1	reviewed	p.S354I	1.000	23	0%	68	30.9%	110	0%	probably_damaging(0.997)	tolerated(0.62)	deleterious(0.470)	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C
SELENBP1	8991	genome.wustl.edu	37	1	151338052	151338052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003944.2	-1	reviewed	p.R344H	1.000	198	0%	414	22.2%	112	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C
POGZ	23126	genome.wustl.edu	37	1	151378786	151378786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015100.2	-1	reviewed	p.P909S	0.919	150	0%	292	16.4%	42	0%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
POGZ	23126	genome.wustl.edu	37	1	151396522	151396522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015100.2	-1	reviewed	p.R476W	1.000	151	0%	397	17.1%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POGZ	23126	genome.wustl.edu	37	1	151396580	151396580	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015100.2	-1	reviewed	p.N456	0.002	168	0%	387	20.7%	27	0%	-	-	-	NULL
CELF3	11189	genome.wustl.edu	37	1	151677596	151677596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007185.4	-1	reviewed	p.A440V	1.000	40	0%	67	17.9%	0	-	benign(0.415)	deleterious(0)	deleterious(0.579)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CELF3	11189	genome.wustl.edu	37	1	151678303	151678303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007185.4	-1	reviewed	p.C422Y	1.000	56	0%	134	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CELF3	11189	genome.wustl.edu	37	1	151680007	151680007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007185.4	-1	reviewed	p.A250T	1.000	12	0%	35	20%	0	-	benign(0.005)	tolerated(0.17)	neutral(0.059)	NULL
CELF3	11189	genome.wustl.edu	37	1	151681548	151681548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007185.4	-1	reviewed	p.A138T	1.000	98	0%	190	20.5%	1	0%	possibly_damaging(0.521)	deleterious(0)	deleterious(0.620)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LINGO4	339398	genome.wustl.edu	37	1	151774021	151774021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004432.2	-1	provisional	p.G387D	0.972	60	0%	117	20.5%	0	-	benign(0.119)	tolerated(0.1)	neutral(0.296)	HMMSmart_LRRCT,superfamily_SSF52058
S100A11	6282	genome.wustl.edu	37	1	152005287	152005287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005620.1	-1	reviewed	p.P57S	0.999	111	0%	250	15.6%	1441	0%	possibly_damaging(0.905)	deleterious(0.01)	deleterious(0.765)	superfamily_SSF47473
TCHH	7062	genome.wustl.edu	37	1	152082475	152082475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007113.2	-1	provisional	p.R1073H	0.167	383	0%	748	17.1%	6	0%	unknown(0)	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152085137	152085137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007113.2	-1	provisional	p.R186C	0.005	112	0%	183	17.5%	0	-	unknown(0)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152275641	152275641	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002016.1	-1	reviewed	p.R3907	0.000	178	0%	323	18%	2	0%	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152278877	152278877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002016.1	-1	reviewed	p.R2829C	0.003	680	0%	948	10.9%	0	-	unknown(0)	tolerated(0.08)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152280001	152280001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002016.1	-1	reviewed	p.T2454M	0.000	409	0%	506	23.1%	0	-	unknown(0)	tolerated(0.12)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152281097	152281097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002016.1	-1	reviewed	p.S2089A	0.000	379	0%	437	15.8%	4	0%	unknown(0)	tolerated(0.26)	-	NULL
LCE3A	353142	genome.wustl.edu	37	1	152595576	152595576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178431.1	-1	validated	p.S2P	0.979	136	0%	215	15.8%	1	0%	unknown(0)	-	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152732850	152732850	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025231.1	+1	provisional	p.L262	0.543	130	0%	267	20.2%	0	-	-	-	-	NULL
LCE1C	353133	genome.wustl.edu	37	1	152777713	152777713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178351.3	-1	validated	p.R81M	0.675	113	0%	184	10.9%	0	-	unknown(0)	-	-	NULL
IVL	3713	genome.wustl.edu	37	1	152883770	152883770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005547.2	+1	reviewed	p.Q499H	0.000	25	0%	80	38.8%	0	-	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	HMMPfam_Involucrin
PGLYRP3	114771	genome.wustl.edu	37	1	153270504	153270504	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052891.1	-1	provisional	p.D318	0.421	867	0%	1639	17.1%	0	-	-	-	-	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP
CHTOP	26097	genome.wustl.edu	37	1	153617685	153617685	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015607.2	+1	provisional	p.G229	1.000	90	0%	175	14.3%	280	0%	-	-	-	NULL
NPR1	4881	genome.wustl.edu	37	1	153658636	153658636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000906.3	+1	validated	p.R573H	1.000	35	0%	131	15.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NPR1	4881	genome.wustl.edu	37	1	153659150	153659150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000906.3	+1	validated	p.T596I	1.000	136	0%	478	19%	1	0%	possibly_damaging(0.927)	tolerated(0.09)	deleterious(0.671)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NPR1	4881	genome.wustl.edu	37	1	153661759	153661759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000906.3	+1	validated	p.A887V	1.000	68	0%	273	20.5%	0	-	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
INTS3	65123	genome.wustl.edu	37	1	153734053	153734053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023015.3	+1	validated	p.A473T	1.000	107	0%	203	21.2%	35	0%	possibly_damaging(0.942)	tolerated(0.38)	neutral(0.405)	HMMPfam_DUF2356
INTS3	65123	genome.wustl.edu	37	1	153737175	153737175	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023015.3	+1	validated	p.E645	1.000	159	0%	319	16.3%	44	0%	-	-	-	NULL
SLC27A3	11000	genome.wustl.edu	37	1	153751770	153751770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000368659	+1	known	p.R25C	0.000	61	0%	163	17.2%	0	-	-	-	-	NULL
DENND4B	9909	genome.wustl.edu	37	1	153905209	153905209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014856.2	-1	validated	p.A1223D	0.958	26	0%	102	19.6%	10	0%	possibly_damaging(0.722)	tolerated(0.53)	neutral(0.270)	NULL
TPM3	7170	genome.wustl.edu	37	1	154141803	154141803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152263.2	-1	reviewed	p.A278T	1.000	99	0%	279	17.9%	6	0%	benign(0)	tolerated(1)	-	HMMPfam_Tropomyosin
TPM3	7170	genome.wustl.edu	37	1	154141826	154141826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152263.2	-1	reviewed	p.A270V	1.000	105	0%	276	13.8%	7	0%	benign(0.003)	tolerated(0.11)	neutral(0.272)	HMMPfam_Tropomyosin
ATP8B2	57198	genome.wustl.edu	37	1	154315639	154315639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020452.3	+1	reviewed	p.A535T	1.000	40	0%	111	25.2%	12	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
TDRD10	126668	genome.wustl.edu	37	1	154493948	154493948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098475.1	+1	validated	p.A121V	0.000	280	0.4%	871	16.5%	0	-	benign(0)	-	-	NULL
TDRD10	126668	genome.wustl.edu	37	1	154516526	154516526	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098475.1	+1	validated	p.G197	0.995	137	0.7%	353	14.7%	0	-	-	-	-	NULL
PBXIP1	57326	genome.wustl.edu	37	1	154919053	154919053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020524.2	-1	provisional	p.I366T	0.000	52	0%	141	18.4%	19	0%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
PBXIP1	57326	genome.wustl.edu	37	1	154919243	154919243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020524.2	-1	provisional	p.P303S	0.850	47	0%	140	23.6%	36	0%	benign(0.035)	tolerated(0.21)	neutral(0.046)	NULL
FLAD1	80308	genome.wustl.edu	37	1	154965072	154965072	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000405236	+1	known	p.S317	0.004	32	0%	150	20.7%	6	0%	-	-	-	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154988027	154988027	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015872.2	+1	validated	p.P297	0.893	40	0%	59	20.3%	31	0%	-	-	-	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154988264	154988264	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015872.2	+1	validated	p.C376	0.997	67	0%	114	16.7%	53	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
THBS3	7059	genome.wustl.edu	37	1	155165843	155165843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007112.3	-1	reviewed	p.R916H	1.000	58	0%	160	11.9%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases
GBA	2629	genome.wustl.edu	37	1	155207269	155207269	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000157.3	-1	reviewed	p.L288	0.996	55	0%	88	12.5%	43	0%	-	-	-	HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases
FAM189B	10712	genome.wustl.edu	37	1	155224465	155224465	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006589.2	-1	validated	p.C68	1.000	37	0%	59	22%	24	0%	-	-	-	NULL
CLK2	1196	genome.wustl.edu	37	1	155238502	155238502	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003993.2	-1	reviewed	p.R161*	1.000	44	0%	132	15.9%	47	0%	-	-	-	superfamily_Kinase_like
RUSC1-AS1	284618	genome.wustl.edu	37	1	155291163	155291163	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039517.1	-1	predicted	p.G39	0.004	27	0%	56	21.4%	0	-	-	-	-	NULL
RUSC1	23623	genome.wustl.edu	37	1	155291734	155291734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105203.1	+1	validated	p.G57D	1.000	59	0%	196	23.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155317519	155317519	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018489.2	-1	reviewed	p.D2577	0.000	219	0%	617	17.5%	28	0%	-	-	-	superfamily_FYVE/PHD zinc finger
ASH1L	55870	genome.wustl.edu	37	1	155365308	155365308	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018489.2	-1	reviewed	p.K2015	1.000	70	0%	102	15.7%	10	0%	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155450170	155450170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018489.2	-1	reviewed	p.P831S	1.000	292	0%	790	18.7%	4	0%	benign(0.005)	deleterious(0)	neutral(0.445)	HMMSmart_SM00384
GON4L	54856	genome.wustl.edu	37	1	155732151	155732151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037533.1	-1	validated	p.A1581S	1.000	28	0%	67	22.4%	24	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
GON4L	54856	genome.wustl.edu	37	1	155735352	155735352	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037533.1	-1	validated	p.P1304	0.000	103	0%	199	23.6%	24	0%	-	-	-	NULL
ARHGEF2	9181	genome.wustl.edu	37	1	155931469	155931469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004723.3	-1	validated	p.A456V	0.785	53	0%	137	23.4%	64	0%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
LAMTOR2	28956	genome.wustl.edu	37	1	156028077	156028077	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000368302	+1	known	p.C110	0.000	29	0%	103	24.3%	0	-	-	-	-	superfamily_SSF103196
MEX3A	92312	genome.wustl.edu	37	1	156047186	156047186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001093725.1	-1	validated	p.R248C	1.000	5	0.000	36	0.250	105	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
SEMA4A	64218	genome.wustl.edu	37	1	156132875	156132875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022367.2	+1	provisional	p.R375Q	1.000	88	0%	156	19.9%	7	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SLC25A44	9673	genome.wustl.edu	37	1	156170081	156170081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014655.2	+1	validated	p.R148H	1.000	121	0%	354	21.2%	13	0%	benign(0.376)	tolerated(0.12)	neutral(0.381)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SMG5	23381	genome.wustl.edu	37	1	156221193	156221193	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015327.2	-1	validated	e20+1	1.000	70	0%	165	19.4%	5	0%	-	-	-	-
CCT3	7203	genome.wustl.edu	37	1	156288726	156288726	+	Missense_Mutation	SNP	C	C	T	rs138692004	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005998.3	-1	reviewed	p.R231H	0.999	51	0%	157	17.2%	391	0.2%	possibly_damaging(0.676)	deleterious(0)	deleterious(0.685)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
RHBG	57127	genome.wustl.edu	37	1	156347982	156347982	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000400992	+1	known	p.Q123	0.000	9	0.000	17	0.294	0	-	-	-	-	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt
IQGAP3	128239	genome.wustl.edu	37	1	156503571	156503571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178229.4	-1	validated	p.L1324I	1.000	35	0%	59	22%	31	0%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	HMMSmart_RasGAP
GPATCH4	54865	genome.wustl.edu	37	1	156565382	156565382	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015590.2	-1	validated	p.R251*	0.000	268	0%	560	22.1%	57	0%	-	-	-	NULL
BCAN	63827	genome.wustl.edu	37	1	156617471	156617471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021948.3	+1	validated	p.V213A	1.000	83	0%	199	20.6%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
BCAN	63827	genome.wustl.edu	37	1	156618428	156618428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021948.3	+1	validated	p.R280W	0.982	108	0%	298	22.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
BCAN	63827	genome.wustl.edu	37	1	156621440	156621440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021948.3	+1	validated	p.S419Y	1.000	114	0%	286	14.7%	0	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
NES	10763	genome.wustl.edu	37	1	156641106	156641106	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006617.1	-1	reviewed	p.D958	0.000	140	0%	339	13.3%	19	0%	-	-	-	NULL
RRNAD1	51093	genome.wustl.edu	37	1	156702118	156702118	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015997.3	+1	validated	p.T94	0.739	56	0%	139	15.8%	21	0%	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
RRNAD1	51093	genome.wustl.edu	37	1	156705547	156705547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142560.1	+1	validated	p.A223T	0.856	59	0%	138	14.5%	17	0%	benign(0.005)	tolerated(0.4)	neutral(0.016)	NULL
INSRR	3645	genome.wustl.edu	37	1	156821779	156821779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014215.1	-1	validated	p.A281V	1.000	18	0%	42	21.4%	0	-	benign(0.285)	tolerated(0.54)	neutral(0.095)	HMMPfam_Furin-like,superfamily_Grow_fac_recept
INSRR	3645	genome.wustl.edu	37	1	156821943	156821943	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014215.1	-1	validated	p.G226	0.069	32	0%	50	14%	0	-	-	-	-	HMMPfam_Furin-like,HMMSmart_FU,superfamily_Grow_fac_recept
NTRK1	4914	genome.wustl.edu	37	1	156848925	156848925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002529.3	+1	reviewed	p.P606H	1.000	40	0%	88	14.8%	0	-	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PEAR1	375033	genome.wustl.edu	37	1	156882099	156882099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080471.1	+1	provisional	p.G671E	0.755	34	0%	52	19.2%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMSmart_EGF,superfamily_Grow_fac_recept
ARHGEF11	9826	genome.wustl.edu	37	1	156914914	156914914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198236.1	-1	reviewed	p.A963V	0.998	71	0%	83	18.1%	16	0%	benign(0.291)	tolerated(0.05)	neutral(0.435)	superfamily_DH-domain
ETV3L	440695	genome.wustl.edu	37	1	157068581	157068581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004341.2	-1	validated	p.R135W	0.985	74	0%	126	17.5%	0	-	benign(0.004)	tolerated(0.22)	neutral(0.042)	superfamily_SSF46785
FCRL4	83417	genome.wustl.edu	37	1	157548598	157548598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031282.2	-1	reviewed	p.C441Y	0.000	42	0%	73	21.9%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
FCRL3	115352	genome.wustl.edu	37	1	157665867	157665867	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052939.3	-1	reviewed	p.S365	0.001	137	0%	281	16.7%	2	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158059510	158059510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018240.5	+1	validated	p.P392S	1.000	71	0%	148	12.2%	4	0%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158059572	158059572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018240.5	+1	validated	p.E412D	0.991	60	0%	138	13%	17	0%	possibly_damaging(0.658)	tolerated(0.06)	deleterious(0.555)	HMMSmart_SM00409,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158063200	158063200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018240.5	+1	validated	p.A515T	0.993	94	0%	199	19.1%	15	0%	benign(0.007)	tolerated(0.77)	neutral(0.001)	NULL
KIRREL	55243	genome.wustl.edu	37	1	158064462	158064462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018240.5	+1	validated	p.R609H	1.000	68	0%	114	15.8%	32	0%	benign(0.265)	deleterious(0.01)	neutral(0.433)	NULL
CD1A	909	genome.wustl.edu	37	1	158226842	158226842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001763.2	+1	reviewed	p.V291I	0.011	125	0%	262	22.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_C1-set,superfamily_SSF48726
CD1C	911	genome.wustl.edu	37	1	158262062	158262062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001765.2	+1	reviewed	p.V173I	0.006	1023	0%	2234	18%	1	0%	benign(0)	tolerated(0.94)	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
CD1C	911	genome.wustl.edu	37	1	158262114	158262114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001765.2	+1	reviewed	p.L190S	0.284	1176	0%	2538	6.5%	1	0%	benign(0.373)	tolerated(0.89)	neutral(0.119)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
OR10T2	128360	genome.wustl.edu	37	1	158368369	158368369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004475.1	-1	provisional	p.E296D	0.979	67	0%	133	15%	0	-	probably_damaging(0.975)	tolerated(0.39)	neutral(0.433)	superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158583632	158583632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003126.2	-1	reviewed	p.R2290C	0.979	189	0%	282	18.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_EF-hand
MNDA	4332	genome.wustl.edu	37	1	158811982	158811983	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002432.1	+1	reviewed	p.E14fs	0.004:0.002	-	-	-	-	-	-	-	-	-	HMMPfam_PAAD_DAPIN
PYHIN1	149628	genome.wustl.edu	37	1	158943538	158943538	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152501.3	+1	validated	p.R487	0.003	241	0%	493	15%	1	0%	-	-	-	NULL
IFI16	3428	genome.wustl.edu	37	1	159002361	159002361	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000448393	+1	known	p.S224N	0.000	367	0%	757	15.6%	17	0%	-	-	-	NULL
CADM3	57863	genome.wustl.edu	37	1	159159607	159159607	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021189.3	+1	validated	p.L45	0.987	39	0%	41	17.1%	0	-	-	-	-	NULL
DARC	2532	genome.wustl.edu	37	1	159175382	159175382	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122951.1	+1	reviewed	p.C53	1.000	96	0%	222	16.2%	0	-	-	-	-	NULL
APCS	325	genome.wustl.edu	37	1	159557760	159557760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001639.3	+1	reviewed	p.A17T	0.004	211	0%	338	15.4%	0	-	benign(0.003)	tolerated(0.21)	neutral(0.044)	NULL
CRP	1401	genome.wustl.edu	37	1	159684222	159684222	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000567.2	-1	reviewed	p.G18	0.003	66	0%	107	15.9%	0	-	-	-	-	NULL
SLAMF8	56833	genome.wustl.edu	37	1	159799777	159799777	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020125.2	+1	reviewed	p.W54*	1.000	126	0%	215	17.2%	3	0%	-	-	-	superfamily_Immunoglobulin
CCDC19	25790	genome.wustl.edu	37	1	159847243	159847243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012337.2	-1	validated	p.A352T	1.000	285	0%	579	14%	2	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
CCDC19	25790	genome.wustl.edu	37	1	159854304	159854304	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012337.2	-1	validated	p.S273	0.011	165	0%	367	18.8%	1	0%	-	-	-	NULL
IGSF9	57549	genome.wustl.edu	37	1	159904612	159904612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135050.1	-1	validated	p.G225E	1.000	61	0%	131	16%	36	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_SSF48726
ATP1A2	477	genome.wustl.edu	37	1	160093820	160093820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000702.3	+1	reviewed	p.D157N	1.000	58	0%	120	20.8%	112	0%	benign(0.183)	deleterious(0.03)	neutral(0.382)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160098598	160098598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000702.3	+1	reviewed	p.D392N	1.000	85	0%	172	15.7%	66	0%	possibly_damaging(0.902)	tolerated(0.2)	neutral(0.406)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160124955	160124955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144699.3	+1	reviewed	p.L110F	1.000	185	0%	337	13.1%	0	-	possibly_damaging(0.437)	deleterious(0.01)	deleterious(0.548)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160169684	160169684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001231.4	+1	reviewed	p.A337V	1.000	28	0%	74	12.2%	0	-	benign(0.209)	tolerated(0.25)	neutral(0.057)	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
DCAF8	50717	genome.wustl.edu	37	1	160194851	160194851	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015726.3	-1	reviewed	e7+1	1.000	77	0%	109	21.1%	0	-	-	-	-	-
DCAF8	50717	genome.wustl.edu	37	1	160213760	160213760	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015726.3	-1	reviewed	p.D13	1.000	405	0%	921	16%	28	0%	-	-	-	NULL
COPA	1314	genome.wustl.edu	37	1	160268672	160268672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098398.1	-1	reviewed	p.T656N	1.000	162	0%	339	23.6%	141	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Coatomer_WDAD
VANGL2	57216	genome.wustl.edu	37	1	160389272	160389272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020335.1	+1	validated	p.A225T	1.000	76	0%	121	15.7%	38	0%	probably_damaging(0.968)	tolerated(0.92)	neutral(0.410)	HMMPfam_Strabismus
LY9	4063	genome.wustl.edu	37	1	160784551	160784551	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000392203	+1	known	p.R318*	0.600	43	0%	70	21.4%	0	-	-	-	-	NULL
ITLN1	55600	genome.wustl.edu	37	1	160850417	160850417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017625.2	-1	validated	p.A216T	0.990	354	0%	712	24.3%	2	0%	benign(0.108)	tolerated(0.59)	neutral(0.013)	superfamily_Fibrinogen C-terminal domain-like
ITLN2	142683	genome.wustl.edu	37	1	160914953	160914953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080878.2	-1	validated	p.A319T	0.998	43	0%	91	16.5%	1	0%	possibly_damaging(0.505)	deleterious(0.05)	deleterious(0.514)	NULL
USF1	7391	genome.wustl.edu	37	1	161012380	161012380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007122.3	-1	reviewed	p.V47I	1.000	48	0%	79	12.7%	72	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
NDUFS2	4720	genome.wustl.edu	37	1	161183249	161183249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004550.4	+1	reviewed	p.A399V	1.000	51	0%	182	14.3%	161	0%	possibly_damaging(0.947)	deleterious(0.03)	deleterious(0.755)	HMMPfam_Complex1_49kDa,superfamily_SSF56762
NR1I3	9970	genome.wustl.edu	37	1	161199504	161199504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077469.1	-1	reviewed	p.P331S	0.000	122	0%	188	22.3%	0	-	unknown(0)	-	-	NULL
FCGR2C	9103	genome.wustl.edu	37	1	161559402	161559402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201563.4	+1	reviewed	p.L62I	0.975	152	0%	378	15.9%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
OLFML2B	25903	genome.wustl.edu	37	1	161953556	161953556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015441.1	-1	provisional	p.T721M	1.000	194	0%	301	16.6%	9	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_OLF,HMMSmart_SM00284
DDR2	4921	genome.wustl.edu	37	1	162745564	162745564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014796.1	+1	reviewed	p.G660E	1.000	354	0%	729	18.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
NUF2	83540	genome.wustl.edu	37	1	163317716	163317716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031423.3	+1	reviewed	p.R371H	0.761	166	0%	305	22.6%	66	0%	benign(0.007)	tolerated(0.22)	neutral(0.042)	NULL
NUF2	83540	genome.wustl.edu	37	1	163325170	163325170	+	Missense_Mutation	SNP	G	G	A	rs144589776	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031423.3	+1	reviewed	p.G436S	0.992	322	0%	517	20.9%	57	0%	benign(0.001)	tolerated(0.88)	-	NULL
PBX1	5087	genome.wustl.edu	37	1	164761955	164761955	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002585.2	+1	validated	p.E164*	1.000	43	0%	64	18.8%	55	0%	-	-	-	HMMPfam_PBC
PBX1	5087	genome.wustl.edu	37	1	164769020	164769020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002585.2	+1	validated	p.R199W	1.000	70	0%	131	24.4%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PBC
LMX1A	4009	genome.wustl.edu	37	1	165182948	165182948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177398.3	-1	validated	p.T200I	1.000	187	0%	318	10.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
LRRC52	440699	genome.wustl.edu	37	1	165532949	165532949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005214.3	+1	validated	p.R277H	0.170	113	0%	232	22%	0	-	benign(0.006)	tolerated(0.26)	neutral(0.034)	NULL
MGST3	4259	genome.wustl.edu	37	1	165624643	165624643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004528.2	+1	reviewed	p.A121T	0.640	72	0%	127	22%	306	0%	possibly_damaging(0.897)	deleterious(0.03)	deleterious(0.718)	HMMPfam_MAPEG
TADA1	117143	genome.wustl.edu	37	1	166826894	166826894	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053053.3	-1	validated	p.T306	0.994	124	0%	329	21.6%	17	5.8%	-	-	-	NULL
MAEL	84944	genome.wustl.edu	37	1	166974607	166974607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032858.1	+1	validated	p.A273V	1.000	117	0%	245	13.1%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
GPA33	10223	genome.wustl.edu	37	1	167042758	167042758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005814.1	-1	reviewed	p.A21V	0.870	63	0%	160	15%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_V-set
ADCY10	55811	genome.wustl.edu	37	1	167830247	167830247	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018417.4	-1	reviewed	p.I557	1.000	226	0%	498	18.9%	0	-	-	-	-	NULL
ADCY10	55811	genome.wustl.edu	37	1	167844411	167844411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018417.4	-1	reviewed	p.A474T	0.973	160	0%	292	12%	0	-	possibly_damaging(0.811)	tolerated(0.38)	neutral(0.323)	NULL
DCAF6	55827	genome.wustl.edu	37	1	167962634	167962634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018442.2	+1	validated	p.A287T	1.000	153	0.7%	207	17.4%	12	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_WD40_like
GPR161	23432	genome.wustl.edu	37	1	168056928	168056928	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153832.1	-1	provisional	p.L407	1.000	73	1.4%	141	22.7%	21	0%	-	-	-	NULL
ATP1B1	481	genome.wustl.edu	37	1	169094255	169094255	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001677.3	+1	reviewed	p.D120	0.730	285	0%	561	23.9%	128	0%	-	-	-	HMMPfam_Na_K-ATPase
F5	2153	genome.wustl.edu	37	1	169505798	169505798	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000130.4	-1	reviewed	p.E1639	0.998	107	0%	208	19.2%	0	-	-	-	-	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169524432	169524432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000130.4	-1	reviewed	p.A369V	0.889	221	0%	366	18%	0	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169541576	169541576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000130.4	-1	reviewed	p.L86I	1.000	84	0%	162	16%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3
F5	2153	genome.wustl.edu	37	1	169555581	169555581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000130.4	-1	reviewed	p.G15D	0.966	62	0%	107	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
METTL18	92342	genome.wustl.edu	37	1	169762181	169762181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033418.1	-1	provisional	p.N219S	1.000	375	0.3%	721	15.8%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LOC646804	646804	genome.wustl.edu	37	1	171053067	171053067	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_929761.3	+1	model	p.D145	0.115	32	0%	76	21.1%	0	-	-	-	-	NULL
FMO3	2328	genome.wustl.edu	37	1	171085413	171085413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002294.2	+1	reviewed	p.R417C	0.000	249	0%	383	11.7%	2	0%	benign(0.005)	tolerated(0.05)	neutral(0.345)	HMMPfam_FMO-like
FMO3	2328	genome.wustl.edu	37	1	171086490	171086490	+	Missense_Mutation	SNP	G	G	A	rs72549335		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002294.2	+1	reviewed	p.G503R	0.006	206	0%	357	21%	1	0%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_FMO-like
PRRC2C	23215	genome.wustl.edu	37	1	171482184	171482184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015172.3	+1	validated	p.R53C	1.000	198	0%	428	17.3%	24	0%	unknown(0)	-	-	HMMPfam_BAT2_N
PRRC2C	23215	genome.wustl.edu	37	1	171504578	171504578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015172.3	+1	validated	p.V627I	0.666	177	0%	376	22.1%	35	0%	benign(0.414)	tolerated(0.36)	neutral(0.154)	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171509342	171509342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015172.3	+1	validated	p.R911W	0.499	154	0%	252	21.4%	21	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MYOC	4653	genome.wustl.edu	37	1	171607859	171607859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000261.1	-1	reviewed	p.S203Y	0.080	219	0%	381	17.3%	0	-	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	NULL
METTL13	51603	genome.wustl.edu	37	1	171753063	171753063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015935.4	+1	validated	p.A113T	0.982	80	0%	147	13.6%	71	0%	possibly_damaging(0.538)	tolerated(0.08)	deleterious(0.482)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DNM3	26052	genome.wustl.edu	37	1	172011170	172011170	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015569.3	+1	validated	p.V338	1.000	268	0%	485	14.4%	2	0%	-	-	-	HMMPfam_Dynamin_M
DNM3	26052	genome.wustl.edu	37	1	172100368	172100368	+	Silent	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015569.3	+1	validated	p.G533	0.999	79	0%	105	21.9%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
C1orf9	51430	genome.wustl.edu	37	1	172520731	172520731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014283.3	+1	validated	p.A48T	0.540	59	0%	213	16.9%	7	0%	benign(0.323)	deleterious(0)	deleterious(0.545)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173506160	173506160	+	Missense_Mutation	SNP	G	G	A	rs187759185	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178527.3	-1	validated	p.R526C	0.984	322	0%	717	16.2%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	NULL
CENPL	91687	genome.wustl.edu	37	1	173769630	173769630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127181.2	-1	validated	p.V377M	1.000	68	0%	114	25.4%	20	0%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	NULL
DARS2	55157	genome.wustl.edu	37	1	173819483	173819483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018122.4	+1	reviewed	p.L404I	0.997	45	0%	109	22.9%	35	0%	benign(0.308)	tolerated(0.56)	neutral(0.103)	HMMPfam_GAD,HMMPfam_tRNA-synt_2,superfamily_SSF55261,superfamily_SSF55681
SERPINC1	462	genome.wustl.edu	37	1	173873107	173873107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000488.3	-1	reviewed	p.P439S	1.000	154	0%	328	19.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin
RC3H1	149041	genome.wustl.edu	37	1	173930297	173930297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172071.2	-1	validated	p.A763V	1.000	193	0%	341	15.2%	4	0%	benign(0.002)	tolerated(0.27)	neutral(0.034)	NULL
RC3H1	149041	genome.wustl.edu	37	1	173933139	173933139	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172071.2	-1	validated	p.P601	0.912	91	0%	159	17.6%	7	0%	-	-	-	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174671316	174671316	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014857.3	+1	validated	p.S697	1.000	165	0%	291	17.2%	7	0%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
MRPS14	63931	genome.wustl.edu	37	1	174983858	174983858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022100.1	-1	reviewed	p.R112C	1.000	328	0%	503	16.1%	65	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Ribosomal_S14,superfamily_SSF57716
TNN	63923	genome.wustl.edu	37	1	175086261	175086261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022093.1	+1	validated	p.P769L	1.000	142	0%	230	20.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNN	63923	genome.wustl.edu	37	1	175097224	175097224	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022093.1	+1	validated	p.G1034	0.000	103	0%	234	21.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PAPPA2	60676	genome.wustl.edu	37	1	176525963	176525963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020318.2	+1	validated	p.A169T	0.002	248	0%	484	25.4%	0	-	benign(0.244)	tolerated(0.69)	neutral(0.027)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176526320	176526320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020318.2	+1	validated	p.T288A	1.000	118	0%	218	18.8%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMSmart_SM00560,superfamily_Concanavalin A-like lectins/glucanases
PAPPA2	60676	genome.wustl.edu	37	1	176668660	176668660	+	Silent	SNP	C	C	T	rs148565646	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020318.2	+1	validated	p.R1057	0.085	444	0%	577	21.8%	0	-	-	-	-	PatternScan_N6_MTASE
PAPPA2	60676	genome.wustl.edu	37	1	176679239	176679239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020318.2	+1	validated	p.T1193I	0.128	236	0%	415	22.2%	0	-	benign(0.194)	deleterious(0.02)	neutral(0.401)	NULL
ASTN1	460	genome.wustl.edu	37	1	176838138	176838138	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000450659	-1	known	p.S454F	1.000	232	0%	367	16.3%	1	0%	-	-	-	NULL
C1orf49	84066	genome.wustl.edu	37	1	178483203	178483203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032126.4	+1	validated	p.E27D	0.990	111	0%	225	17.3%	0	-	benign(0.181)	deleterious(0)	neutral(0.461)	NULL
C1orf220	400798	genome.wustl.edu	37	1	178514721	178514721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000319387	+1	known	p.G36D	0.000	35	0%	61	24.6%	1	0%	unknown(0)	-	-	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178753656	178753656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152663.3	+1	validated	p.A54V	1.000	92	0%	203	17.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RALGPS2	55103	genome.wustl.edu	37	1	178780473	178780473	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152663.3	+1	validated	p.E107	1.000	206	0%	430	18.8%	0	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
ABL2	27	genome.wustl.edu	37	1	179095654	179095654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007314.3	-1	reviewed	p.A182V	1.000	80	0%	238	18.5%	2	0%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SOAT1	6646	genome.wustl.edu	37	1	179271864	179271864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003101.4	+1	provisional	p.K15N	0.949	263	0%	667	14.8%	13	0%	benign(0.007)	tolerated(0.09)	neutral(0.296)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179452353	179452353	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144696.4	+1	validated	p.H696	0.259	185	0%	370	24.9%	0	-	-	-	-	NULL
FAM163A	148753	genome.wustl.edu	37	1	179783050	179783050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173509.2	+1	provisional	p.A77V	0.922	26	0%	39	17.9%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
FAM163A	148753	genome.wustl.edu	37	1	179783142	179783142	+	Missense_Mutation	SNP	C	C	T	rs181342438	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173509.2	+1	provisional	p.R108W	1.000	65	0%	128	17.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CEP350	9857	genome.wustl.edu	37	1	179959673	179959673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.A51V	0.983	53	0%	95	16.8%	2	0%	benign(0.003)	deleterious(0.05)	neutral(0.345)	NULL
CEP350	9857	genome.wustl.edu	37	1	179965896	179965896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.A202S	1.000	104	0%	207	15.9%	1	0%	benign(0.132)	tolerated(0.07)	neutral(0.330)	NULL
CEP350	9857	genome.wustl.edu	37	1	179966044	179966044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.A251V	0.141	228	0.4%	414	21.5%	3	0%	benign(0)	tolerated(1)	-	NULL
CEP350	9857	genome.wustl.edu	37	1	179989536	179989536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.A876V	0.641	303	0%	498	20.9%	5	0%	possibly_damaging(0.606)	deleterious(0.01)	deleterious(0.616)	NULL
CEP350	9857	genome.wustl.edu	37	1	179989651	179989651	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.G914	1.000	166	0%	333	21.9%	4	0%	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180010867	180010867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.T1431M	0.982	67	0%	154	22.7%	6	0%	unknown(0)	deleterious(0)	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180063531	180063531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014810.4	+1	reviewed	p.K2764R	0.989	189	0%	341	17.9%	8	0%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
XPR1	9213	genome.wustl.edu	37	1	180832961	180832961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004736.3	+1	validated	p.N540S	1.000	311	0%	562	20.1%	22	0%	benign(0.021)	tolerated(0.44)	neutral(0.014)	HMMPfam_EXS
CACNA1E	777	genome.wustl.edu	37	1	181680101	181680102	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000721.2	+1	reviewed	p.E360fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181721359	181721359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000721.2	+1	reviewed	p.R1271H	1.000	234	0.4%	504	20.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181726217	181726217	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000721.2	+1	reviewed	p.E1428	1.000	100	0%	237	17.3%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181741281	181741281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000721.2	+1	reviewed	p.P1685S	0.092	211	0.5%	383	23.2%	0	-	benign(0.028)	tolerated(0.66)	neutral(0.004)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181741311	181741311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000721.2	+1	reviewed	p.G1695S	1.000	240	0%	435	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181764163	181764163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000721.2	+1	reviewed	p.R2021H	1.000	68	0%	84	25%	0	-	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	NULL
GLUL	2752	genome.wustl.edu	37	1	182353785	182353785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033044.2	-1	reviewed	p.G293S	1.000	124	0%	285	22.8%	593	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
GLUL	2752	genome.wustl.edu	37	1	182354584	182354584	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033044.2	-1	reviewed	p.T237	0.989	132	0%	360	20.8%	491	0%	-	-	-	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
RNASEL	6041	genome.wustl.edu	37	1	182555660	182555660	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021133.2	-1	reviewed	p.T94	0.793	77	0%	195	20.5%	3	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RGS16	6004	genome.wustl.edu	37	1	182569572	182569572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002928.3	-1	reviewed	p.A155V	1.000	77	0%	125	13.6%	4	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
DHX9	1660	genome.wustl.edu	37	1	182827691	182827691	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001357.4	+1	reviewed	p.E272	1.000	109	0%	274	14.2%	61	0%	-	-	-	NULL
DHX9	1660	genome.wustl.edu	37	1	182835595	182835595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001357.4	+1	reviewed	p.A450V	1.000	187	0%	422	19.7%	84	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMG7	9887	genome.wustl.edu	37	1	183506286	183506286	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173156.2	+1	validated	p.W390*	1.000	235	0%	357	19.3%	29	0%	-	-	-	NULL
NCF2	4688	genome.wustl.edu	37	1	183546778	183546778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000433.3	-1	reviewed	p.D108Y	1.000	124	0%	254	18.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
APOBEC4	403314	genome.wustl.edu	37	1	183617356	183617356	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203454.2	-1	reviewed	p.S187	0.987	107	0%	262	19.5%	0	-	-	-	-	NULL
GLT25D2	23127	genome.wustl.edu	37	1	183913409	183913409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015101.2	-1	validated	p.R440C	1.000	197	0%	369	16.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_25
FAM129A	116496	genome.wustl.edu	37	1	184863257	184863257	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052966.2	-1	validated	p.Y90	0.089	279	0%	556	16.9%	7	0%	-	-	-	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185270586	185270586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006469.4	-1	validated	p.V292A	1.000	200	0%	457	21%	126	0%	possibly_damaging(0.454)	deleterious(0.01)	deleterious(0.554)	NULL
HMCN1	83872	genome.wustl.edu	37	1	185939558	185939558	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031935.2	+1	reviewed	p.G768	0.888	381	0%	480	13.8%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186014935	186014935	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031935.2	+1	reviewed	p.D2140	0.655	106	0%	201	19.9%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186023068	186023068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031935.2	+1	reviewed	p.A2271V	1.000	196	0.5%	328	17.7%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186099823	186099823	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031935.2	+1	reviewed	p.G4408	1.000	280	0%	485	17.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186143745	186143745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031935.2	+1	reviewed	p.R5305Q	1.000	131	0%	266	23.3%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
HMCN1	83872	genome.wustl.edu	37	1	186147571	186147571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031935.2	+1	reviewed	p.P5323S	1.000	509	0.2%	993	17.2%	2	0%	possibly_damaging(0.73)	tolerated(0.19)	neutral(0.316)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TPR	7175	genome.wustl.edu	37	1	186296767	186296767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003292.2	-1	reviewed	p.P1905H	1.000	84	0%	154	16.2%	74	0%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
TPR	7175	genome.wustl.edu	37	1	186302284	186302284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003292.2	-1	reviewed	p.P1809S	1.000	149	0%	202	18.8%	64	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PTGS2	5743	genome.wustl.edu	37	1	186645267	186645267	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000963.2	-1	reviewed	p.G340	1.000	211	0%	352	15.6%	5	0%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PLA2G4A	5321	genome.wustl.edu	37	1	186946763	186946763	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024420.2	+1	reviewed	p.K601	1.000	192	0%	368	18.8%	7	0%	-	-	-	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
FAM5C	339479	genome.wustl.edu	37	1	190067520	190067520	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199051.1	-1	provisional	p.S643	1.000	448	0%	724	15.6%	0	-	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190067657	190067657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199051.1	-1	provisional	p.R598W	1.000	548	0.2%	827	18.5%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
MIR1278	100302163	genome.wustl.edu	37	1	193105707	193105707	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408753	+1	known	NULL	0.000	29	0%	50	14%	0	-	-	-	-	-
CDC73	79577	genome.wustl.edu	37	1	193205402	193205402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024529.4	+1	reviewed	p.V445I	1.000	264	0.4%	447	12.1%	68	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_CDC73
CDC73	79577	genome.wustl.edu	37	1	193219827	193219827	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024529.4	+1	reviewed	p.S527	1.000	137	0%	263	20.9%	87	0%	-	-	-	NULL
KCNT2	343450	genome.wustl.edu	37	1	196254802	196254802	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198503.2	-1	validated	p.D894	1.000	134	0%	295	16.9%	0	-	-	-	-	NULL
KCNT2	343450	genome.wustl.edu	37	1	196274432	196274432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198503.2	-1	validated	p.A843T	1.000	112	0%	191	15.7%	1	0%	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196285066	196285066	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198503.2	-1	validated	p.Y813	1.000	41	0%	108	20.4%	0	-	-	-	-	NULL
KCNT2	343450	genome.wustl.edu	37	1	196309594	196309594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198503.2	-1	validated	p.N554D	1.000	306	0%	523	19.7%	0	-	possibly_damaging(0.819)	tolerated(0.17)	neutral(0.368)	NULL
CFH	3075	genome.wustl.edu	37	1	196648769	196648769	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000186.3	+1	reviewed	p.S212	0.001	136	0%	268	17.2%	9	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196706138	196706138	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000186.3	+1	reviewed	e16+2	1.000	101	0%	177	18.6%	0	-	-	-	-	-
CFHR1	3078	genome.wustl.edu	37	1	196799813	196799813	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002113.2	+1	reviewed	e5+1	0.993	231	0%	465	22.6%	0	-	-	-	-	-
CFHR5	81494	genome.wustl.edu	37	1	196964852	196964852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030787.3	+1	reviewed	p.V205I	0.038	121	0%	211	19%	0	-	possibly_damaging(0.86)	tolerated(0.13)	deleterious(0.585)	superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196965192	196965192	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030787.3	+1	reviewed	p.Y277	0.353	213	0%	374	19.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196973883	196973883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030787.3	+1	reviewed	p.T475A	0.000	231	0%	394	17%	0	-	benign(0.19)	tolerated(0.17)	neutral(0.077)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197059121	197059121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018136.4	-1	reviewed	p.R3308H	1.000	255	0%	430	18.1%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASPM	259266	genome.wustl.edu	37	1	197073077	197073077	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018136.4	-1	reviewed	p.R1768	0.003	185	0%	416	16.6%	8	0%	-	-	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197074012	197074012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018136.4	-1	reviewed	p.H1457Y	0.067	77	0%	244	23.4%	6	0%	possibly_damaging(0.813)	tolerated(0.08)	deleterious(0.607)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197111914	197111914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018136.4	-1	reviewed	p.R490C	0.998	300	0%	476	18.1%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ASPM	259266	genome.wustl.edu	37	1	197113224	197113224	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018136.4	-1	reviewed	p.E102*	1.000	133	0%	241	12.4%	2	0%	-	-	-	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197150191	197150191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194314.2	-1	validated	p.R535C	1.000	135	0%	279	20.8%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197150220	197150220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194314.2	-1	validated	p.R525H	1.000	120	0%	250	18%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CRB1	23418	genome.wustl.edu	37	1	197390290	197390290	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201253.1	+1	reviewed	p.G444	1.000	167	0%	496	18.8%	0	-	-	-	-	HMMSmart_SM00181
CRB1	23418	genome.wustl.edu	37	1	197404528	197404528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201253.1	+1	reviewed	p.D1179N	0.578	86	0%	282	59.2%	0	-	possibly_damaging(0.849)	tolerated(0.23)	neutral(0.367)	HMMSmart_SM00179,PatternScan_EGF_CA,superfamily_EGF/Laminin
DENND1B	163486	genome.wustl.edu	37	1	197564383	197564383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142795.1	-1	validated	p.Q314H	1.000	510	0%	891	16.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_dDENN,HMMSmart_SM00801
LHX9	56956	genome.wustl.edu	37	1	197889265	197889265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020204.2	+1	reviewed	p.A113V	1.000	155	0%	253	19.8%	0	-	benign(0.009)	tolerated(0.38)	neutral(0.018)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LHX9	56956	genome.wustl.edu	37	1	197898271	197898271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020204.2	+1	reviewed	p.A359V	1.000	141	0%	263	23.6%	0	-	benign(0.088)	tolerated(0.07)	neutral(0.326)	NULL
PTPRC	5788	genome.wustl.edu	37	1	198687383	198687383	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002838.3	+1	reviewed	p.C535	0.003	91	0%	194	12.9%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRC	5788	genome.wustl.edu	37	1	198697525	198697525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002838.3	+1	reviewed	p.A591S	1.000	243	0%	466	19.3%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF281	23528	genome.wustl.edu	37	1	200378164	200378164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012482.3	-1	provisional	p.P224S	1.000	95	0%	215	20%	10	0%	probably_damaging(0.958)	tolerated(0.37)	neutral(0.421)	NULL
KIF14	9928	genome.wustl.edu	37	1	200587836	200587836	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014875.2	-1	validated	p.T6A	0.000	55	0%	182	11%	3	0%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
DDX59	83479	genome.wustl.edu	37	1	200613545	200613545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031725.4	-1	validated	p.P566L	1.000	303	0%	584	17%	12	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C1orf106	55765	genome.wustl.edu	37	1	200878060	200878060	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018265.2	+1	validated	p.S344	1.000	58	0%	93	22.6%	5	0%	-	-	-	NULL
KIF21B	23046	genome.wustl.edu	37	1	200954050	200954050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017596.2	-1	provisional	p.R1247H	1.000	73	0%	104	20.2%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40_like
KIF21B	23046	genome.wustl.edu	37	1	200972906	200972906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017596.2	-1	provisional	p.Q340H	1.000	47	0%	91	25.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
TMEM9	252839	genome.wustl.edu	37	1	201104814	201104814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016456.3	-1	validated	p.D177N	1.000	59	0%	118	16.9%	352	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Tmemb_9
TMEM9	252839	genome.wustl.edu	37	1	201104936	201104936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016456.3	-1	validated	p.R136H	0.919	42	0%	95	18.9%	362	0%	benign(0.007)	tolerated(0.16)	neutral(0.059)	HMMPfam_Tmemb_9
PKP1	5317	genome.wustl.edu	37	1	201291204	201291204	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000299.2	+1	reviewed	p.N503	0.001	35	0%	35	20%	0	-	-	-	-	superfamily_ARM repeat
NAV1	89796	genome.wustl.edu	37	1	201779152	201779152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020443.4	+1	reviewed	p.V1491M	1.000	131	0%	325	20.6%	26	0%	benign(0.261)	deleterious(0.03)	neutral(0.392)	superfamily_SSF52540
IPO9	55705	genome.wustl.edu	37	1	201817581	201817581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018085.4	+1	validated	p.R125C	1.000	122	0%	326	18.1%	53	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
LGR6	59352	genome.wustl.edu	37	1	202287858	202287858	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017403.1	+1	reviewed	p.K809	1.000	78	0%	119	16%	9	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R12B	4660	genome.wustl.edu	37	1	202396274	202396274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032105.2	+1	reviewed	p.A270T	1.000	207	1%	392	18.6%	3	0%	benign(0.115)	tolerated(0.07)	neutral(0.328)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PPP1R12B	4660	genome.wustl.edu	37	1	202464434	202464434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032105.2	+1	reviewed	p.R720H	0.993	169	0%	335	19.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KDM5B	10765	genome.wustl.edu	37	1	202705466	202705466	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006618.3	-1	validated	p.R1047*	0.995	51	2%	191	19.4%	89	0%	-	-	-	HMMPfam_PLU-1
KLHL12	59349	genome.wustl.edu	37	1	202862460	202862460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021633.2	-1	provisional	p.R496H	1.000	218	0%	544	15.4%	59	0%	probably_damaging(0.985)	tolerated(0.17)	deleterious(0.491)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ADIPOR1	51094	genome.wustl.edu	37	1	202911272	202911272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127687.1	-1	validated	p.A294T	1.000	83	0%	246	17.5%	108	0%	possibly_damaging(0.95)	tolerated(0.11)	deleterious(0.665)	HMMPfam_HlyIII
MYOG	4656	genome.wustl.edu	37	1	203054675	203054675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002479.4	-1	reviewed	p.L139I	1.000	35	0%	54	24.1%	0	-	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	superfamily_HLH helix-loop-helix DNA-binding domain
CHI3L1	1116	genome.wustl.edu	37	1	203154344	203154344	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001276.2	-1	reviewed	p.T75	0.005	109	0%	227	19.4%	45	0%	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
FMOD	2331	genome.wustl.edu	37	1	203317030	203317030	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002023.3	-1	reviewed	p.G123	0.228	54	0%	123	17.1%	17	0%	-	-	-	superfamily_SSF52058
FMOD	2331	genome.wustl.edu	37	1	203317066	203317066	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002023.3	-1	reviewed	p.Y111	1.000	36	0%	89	22.5%	29	0%	-	-	-	superfamily_SSF52058
OPTC	26254	genome.wustl.edu	37	1	203472121	203472121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014359.3	+1	reviewed	p.R271H	0.999	13	0%	33	21.2%	0	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	superfamily_SSF52058
GOLT1A	127845	genome.wustl.edu	37	1	204172023	204172023	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198447.1	-1	provisional	e2+1	1.000	114	0%	175	20.6%	0	-	-	-	-	-
PPP1R15B	84919	genome.wustl.edu	37	1	204378620	204378620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032833.3	-1	validated	p.K640N	1.000	113	0%	167	15.6%	30	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PP1c_bdg
PIK3C2B	5287	genome.wustl.edu	37	1	204416603	204416603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002646.3	-1	reviewed	p.R817H	0.523	67	0%	136	17.6%	4	0%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
PIK3C2B	5287	genome.wustl.edu	37	1	204433609	204433609	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002646.3	-1	reviewed	p.R386	1.000	68	0%	133	16.5%	5	0%	-	-	-	HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like
PIK3C2B	5287	genome.wustl.edu	37	1	204438625	204438625	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002646.3	-1	reviewed	p.P102	0.000	121	0%	264	21.6%	0	-	-	-	-	NULL
MDM4	4194	genome.wustl.edu	37	1	204507384	204507384	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002393.3	+1	validated	p.D153	0.000	282	0%	617	15.7%	4	0%	-	-	-	NULL
MDM4	4194	genome.wustl.edu	37	1	204518768	204518768	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002393.3	+1	validated	p.C477	0.999	84	0%	220	19.1%	9	0%	-	-	-	superfamily_RING/U-box
LRRN2	10446	genome.wustl.edu	37	1	204587295	204587295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006338.2	-1	reviewed	p.A609V	1.000	40	0%	45	22.2%	14	0%	possibly_damaging(0.808)	deleterious(0.02)	deleterious(0.687)	NULL
TMEM81	388730	genome.wustl.edu	37	1	205052996	205052996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203376.1	-1	validated	p.Q151H	0.023	195	0.5%	342	19.6%	3	0%	possibly_damaging(0.525)	tolerated(0.2)	neutral(0.226)	HMMSmart_IG,superfamily_SSF48726
TMCC2	9911	genome.wustl.edu	37	1	205210656	205210656	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014858.3	+1	validated	p.G77	1.000	15	0%	40	22.5%	0	-	-	-	-	NULL
KLHDC8A	55220	genome.wustl.edu	37	1	205308441	205308441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018203.1	-1	provisional	p.A213V	1.000	40	0%	97	16.5%	1	0%	benign(0.227)	tolerated(0.07)	neutral(0.342)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
SLC41A1	254428	genome.wustl.edu	37	1	205760731	205760731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173854.4	-1	validated	p.T491N	1.000	57	0%	136	14.7%	40	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MgtE
SLC41A1	254428	genome.wustl.edu	37	1	205768118	205768118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173854.4	-1	validated	p.V222M	1.000	26	0%	61	24.6%	25	0%	probably_damaging(0.985)	tolerated(0.42)	neutral(0.446)	HMMPfam_MgtE
FAM72A	729533	genome.wustl.edu	37	1	206141510	206141510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001123168.1	+1	predicted	p.A73T	1.000	438	0.2%	1099	9.1%	12	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SRGAP2	23380	genome.wustl.edu	37	1	206634701	206634701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015326.2	+1	validated	p.P966S	1.000	142	0%	294	16.3%	17	0%	benign(0.011)	tolerated(0.05)	neutral(0.346)	NULL
LOC100131192	100131192	genome.wustl.edu	37	1	206711677	206711677	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342168.1	-1	model	p.S15	0.000	104	0%	239	16.3%	0	-	-	-	-	NULL
DYRK3	8444	genome.wustl.edu	37	1	206821148	206821148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003582.2	+1	reviewed	p.R202Q	1.000	264	0%	658	15%	6	0%	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	superfamily_Protein kinase-like (PK-like)
IL24	11009	genome.wustl.edu	37	1	207073696	207073696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000367095	+1	known	p.T34M	0.602	39	0%	155	19.4%	0	-	unknown(0)	deleterious(0)	-	NULL
C1orf116	79098	genome.wustl.edu	37	1	207195607	207195607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023938.5	-1	validated	p.A501V	0.000	32	0%	43	16.3%	8	0%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
C1orf116	79098	genome.wustl.edu	37	1	207198345	207198345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023938.5	-1	validated	p.T57I	1.000	52	0%	87	19.5%	4	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CD55	1604	genome.wustl.edu	37	1	207510045	207510045	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114752.1	+1	reviewed	p.S287	0.000	384	0%	1020	23.3%	66	0%	-	-	-	NULL
CD55	1604	genome.wustl.edu	37	1	207532928	207532928	+	Missense_Mutation	SNP	G	G	A	rs55738985		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114752.1	+1	reviewed	p.A413T	0.696	129	0%	215	17.2%	47	0%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
CR2	1380	genome.wustl.edu	37	1	207658891	207658891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006658.2	+1	reviewed	p.A1091S	0.982	136	0%	363	16.3%	0	-	benign(0.156)	deleterious(0)	neutral(0.459)	NULL
CR1	1378	genome.wustl.edu	37	1	207700391	207700391	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000434033	+1	known	p.A339V	0.000	313	0%	651	8.3%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PLXNA2	5362	genome.wustl.edu	37	1	208216456	208216456	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025179.3	-1	reviewed	p.R1323*	0.998	19	0%	50	20%	12	0%	-	-	-	HMMPfam_Plexin_cytopl
PLXNA2	5362	genome.wustl.edu	37	1	208218448	208218448	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025179.3	-1	reviewed	p.C1201	0.751	63	0%	100	18%	9	0%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PLXNA2	5362	genome.wustl.edu	37	1	208227831	208227831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025179.3	-1	reviewed	p.R931C	1.000	53	0%	114	35.1%	18	0%	possibly_damaging(0.64)	tolerated(0.05)	deleterious(0.570)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PLXNA2	5362	genome.wustl.edu	37	1	208270191	208270191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025179.3	-1	reviewed	p.A590V	0.877	59	0%	93	18.3%	9	0%	benign(0.043)	tolerated(0.07)	neutral(0.322)	NULL
PLXNA2	5362	genome.wustl.edu	37	1	208390389	208390389	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025179.3	-1	reviewed	p.Y293	0.514	65	0%	142	20.4%	13	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA2	5362	genome.wustl.edu	37	1	208390895	208390895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025179.3	-1	reviewed	p.R125C	1.000	109	0%	265	16.6%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
LAMB3	3914	genome.wustl.edu	37	1	209791835	209791835	+	Silent	SNP	C	C	T	rs143164025	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000228.2	-1	reviewed	p.A957	0.000	31	0%	47	14.9%	52	0%	-	-	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209803226	209803226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000228.2	-1	reviewed	p.A330T	0.999	93	0%	166	16.3%	31	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
LAMB3	3914	genome.wustl.edu	37	1	209807808	209807808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000228.2	-1	reviewed	p.R183H	0.001	93	0%	188	16%	20	0%	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
HSD11B1	3290	genome.wustl.edu	37	1	209905924	209905924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005525.2	+1	reviewed	p.E221*	1.000	158	0%	394	16.8%	2	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
TRAF3IP3	80342	genome.wustl.edu	37	1	209952782	209952782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000400959	+1	known	p.A400V	0.000	79	0%	134	22.4%	0	-	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	NULL
DIEXF	27042	genome.wustl.edu	37	1	210015828	210015828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000457820	+1	known	p.249G	0.119	121	0%	353	20.7%	2	0%	-	-	-	NULL
HHAT	55733	genome.wustl.edu	37	1	210761332	210761332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122834.2	+1	validated	p.W378*	1.000	108	0%	167	18.6%	1	0%	-	-	-	HMMPfam_MBOAT
KCNH1	3756	genome.wustl.edu	37	1	210857434	210857434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172362.2	-1	reviewed	p.R720H	0.963	71	0%	99	13.1%	1	0%	possibly_damaging(0.877)	tolerated(0.07)	deleterious(0.661)	NULL
KCNH1	3756	genome.wustl.edu	37	1	211093209	211093209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172362.2	-1	reviewed	p.T412I	0.900	340	0%	559	18.1%	0	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RCOR3	55758	genome.wustl.edu	37	1	211451529	211451529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136223.1	+1	validated	p.S196N	1.000	252	0%	625	17%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRAF5	7188	genome.wustl.edu	37	1	211545547	211545547	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033910.2	+1	reviewed	p.R393*	1.000	400	0%	759	21.3%	12	16.6%	-	-	-	NULL
VASH2	79805	genome.wustl.edu	37	1	213146177	213146177	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024749.3	+1	validated	p.Y207	0.653	52	0%	153	23.5%	6	0%	-	-	-	NULL
ANGEL2	90806	genome.wustl.edu	37	1	213180399	213180399	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000310246	-1	known	p.C238	0.005	49	0%	126	19.8%	1	0%	-	-	-	NULL
SMYD2	56950	genome.wustl.edu	37	1	214504371	214504371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020197.2	+1	validated	p.R299C	1.000	164	0%	184	21.2%	173	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPN14	5784	genome.wustl.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	CCT	-	rs143136196	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005401.4	-1	reviewed	p.E716in_frame_del	0.182:0.503:0.995	-	-	-	-	-	-	-	-	-	NULL
PTPN14	5784	genome.wustl.edu	37	1	214557727	214557727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005401.4	-1	reviewed	p.R491W	1.000	225	0%	275	10.5%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CENPF	1063	genome.wustl.edu	37	1	214791952	214791952	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016343.3	+1	reviewed	p.A132	0.000	122	0%	262	17.9%	26	0%	-	-	-	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214811226	214811226	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016343.3	+1	reviewed	p.N488	0.018	86	0%	228	17.5%	23	0%	-	-	-	NULL
CENPF	1063	genome.wustl.edu	37	1	214819839	214819839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016343.3	+1	reviewed	p.R2309H	0.000	199	0%	452	17.9%	94	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
KCNK2	3776	genome.wustl.edu	37	1	215259847	215259847	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017425.2	+1	reviewed	p.T61	0.657	69	0%	154	16.9%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
KCNK2	3776	genome.wustl.edu	37	1	215408243	215408243	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017425.2	+1	reviewed	p.R346*	1.000	195	0%	345	20.6%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
KCTD3	51133	genome.wustl.edu	37	1	215792518	215792518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016121.3	+1	validated	p.E591K	1.000	181	0%	400	21.5%	73	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
USH2A	7399	genome.wustl.edu	37	1	215824057	215824057	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.A4740	0.979	234	0.4%	288	13.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215844391	215844391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.P4686S	0.001	458	0%	742	15.9%	0	-	benign(0.005)	tolerated(0.55)	neutral(0.007)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215956215	215956215	+	Nonsense_Mutation	SNP	G	G	A	rs111033379		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.R3484*	1.000	122	0%	236	16.1%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215987179	215987179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.P3213L	0.008	141	0%	331	10.9%	0	-	benign(0.059)	tolerated(0.06)	neutral(0.327)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216011419	216011419	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.C3095	1.000	237	0%	458	22.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216019218	216019218	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.N3001	1.000	121	0%	247	20.6%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216074237	216074237	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.G2437	0.981	108	0%	185	22.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216138761	216138761	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.Q2340*	0.507	208	0%	471	15.9%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216246245	216246245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.R1948H	0.997	249	0%	468	19%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216246286	216246286	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.S1934	0.007	254	0%	487	16.6%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216348735	216348735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206933.2	-1	reviewed	p.P1496S	0.996	73	0%	158	18.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
GPATCH2	55105	genome.wustl.edu	37	1	217604612	217604612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018040.2	-1	provisional	p.R488*	0.996	323	0%	595	17.8%	10	0%	-	-	-	HMMPfam_G-patch,HMMSmart_SM00443
SLC30A10	55532	genome.wustl.edu	37	1	220089025	220089025	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018713.2	-1	validated	p.G408	0.861	118	0%	179	15.6%	0	-	-	-	-	NULL
EPRS	2058	genome.wustl.edu	37	1	220208320	220208320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004446.2	-1	reviewed	p.R56H	1.000	118	0%	301	18.3%	54	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MARK1	4139	genome.wustl.edu	37	1	220791875	220791875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018650.3	+1	validated	p.G259D	1.000	198	0%	396	19.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MARC1	64757	genome.wustl.edu	37	1	220970031	220970031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022746.3	+1	validated	p.A166T	0.950	47	0%	113	11.5%	27	0%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like
MARC1	64757	genome.wustl.edu	37	1	220970107	220970107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022746.3	+1	validated	p.R191H	0.086	33	0%	85	17.6%	29	0%	benign(0.007)	tolerated(0.12)	neutral(0.261)	superfamily_PK beta-barrel domain-like
HLX	3142	genome.wustl.edu	37	1	221055540	221055540	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021958.3	+1	validated	p.P269	0.000	57	0%	87	28.7%	8	0%	-	-	-	superfamily_Homeodomain_like
HLX	3142	genome.wustl.edu	37	1	221057695	221057695	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021958.3	+1	validated	p.G372	1.000	20	0%	49	30.6%	6	0%	-	-	-	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222712048	222712048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024746.3	-1	validated	p.R507C	1.000	224	0%	432	12%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Quino_gluc_DH
MIA3	375056	genome.wustl.edu	37	1	222828048	222828048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198551.2	+1	validated	p.A1507G	0.025	237	0%	517	16.6%	68	0%	benign(0.163)	tolerated(0.08)	neutral(0.315)	NULL
BROX	148362	genome.wustl.edu	37	1	222898866	222898866	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144695.2	+1	validated	p.Y183	0.699	109	0%	245	16.3%	36	0%	-	-	-	HMMPfam_BRO1
DISP1	84976	genome.wustl.edu	37	1	223176720	223176720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032890.2	+1	reviewed	p.R661W	1.000	106	0%	208	15.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched,superfamily_SSF82866
TLR5	7100	genome.wustl.edu	37	1	223283999	223283999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003268.5	-1	reviewed	p.V792A	0.823	62	0%	187	17.6%	4	0%	possibly_damaging(0.492)	tolerated(0.05)	deleterious(0.509)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
SUSD4	55061	genome.wustl.edu	37	1	223396739	223396739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000271787	-1	known	p.A207V	0.012	60	0%	94	17%	4	0%	benign(0.095)	deleterious(0)	neutral(0.452)	NULL
SUSD4	55061	genome.wustl.edu	37	1	223402609	223402609	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017982.3	-1	validated	p.S282	0.075	82	0%	140	17.9%	4	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C1orf65	164127	genome.wustl.edu	37	1	223567551	223567551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152610.2	+1	validated	p.S245I	0.002	54	0%	72	22.2%	1	0%	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	NULL
C1orf65	164127	genome.wustl.edu	37	1	223567887	223567887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152610.2	+1	validated	p.R357H	0.081	9	0.000	18	0.278	0	-	possibly_damaging(0.886)	tolerated(0.16)	neutral(0.406)	NULL
CAPN2	824	genome.wustl.edu	37	1	223933077	223933077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001748.4	+1	reviewed	p.L166I	1.000	56	0%	101	18.8%	73	0%	possibly_damaging(0.616)	tolerated(0.2)	neutral(0.264)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN2	824	genome.wustl.edu	37	1	223934868	223934868	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001748.4	+1	reviewed	e5+1	1.000	125	0%	247	19%	0	-	-	-	-	-
CAPN2	824	genome.wustl.edu	37	1	223940622	223940622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001748.4	+1	reviewed	p.R367W	1.000	76	0%	144	18.8%	62	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
C1orf55	163859	genome.wustl.edu	37	1	226173192	226173192	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152608.3	-1	validated	p.A389	0.014	227	0%	503	10.1%	23	0%	-	-	-	NULL
PARP1	142	genome.wustl.edu	37	1	226564979	226564979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001618.3	-1	reviewed	p.R591C	1.000	344	0%	831	20.3%	321	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WGR,HMMSmart_SM00773
ITPKB	3707	genome.wustl.edu	37	1	226924241	226924241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002221.3	-1	reviewed	p.A307T	0.140	19	0%	52	21.2%	3	0%	benign(0.063)	deleterious(0)	neutral(0.449)	NULL
SNAP47	116841	genome.wustl.edu	37	1	227935928	227935928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053052.3	+1	validated	p.A209V	1.000	32	0%	38	18.4%	24	0%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
SNAP47	116841	genome.wustl.edu	37	1	227947039	227947039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053052.3	+1	validated	p.R326C	0.988	87	0%	152	17.1%	50	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228434341	228434341	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098623.1	+1	reviewed	p.T1290	0.467	69	0%	220	24.5%	1	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228444508	228444508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098623.1	+1	reviewed	p.R1489H	0.003	37	0%	76	21.1%	1	0%	possibly_damaging(0.891)	tolerated(0.22)	neutral(0.392)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228456343	228456343	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098623.1	+1	reviewed	p.T1658	0.106	13	0%	21	23.8%	1	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228475463	228475463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098623.1	+1	reviewed	p.R3205C	1.000	22	0%	25	32%	4	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228479791	228479791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098623.1	+1	reviewed	p.A3511V	0.002	71	0%	173	15.6%	2	0%	unknown(0)	tolerated(0.18)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228509283	228509283	+	Missense_Mutation	SNP	C	C	T	rs34118894		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098623.1	+1	reviewed	p.A4914V	0.001	20	0%	36	25%	5	0%	benign(0.017)	tolerated(0.33)	neutral(0.025)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TRIM11	81559	genome.wustl.edu	37	1	228582687	228582687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145214.2	-1	reviewed	p.G376S	0.615	79	0%	149	18.8%	61	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SM00449
RAB4A	5867	genome.wustl.edu	37	1	229433246	229433246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004578.2	+1	provisional	p.A103V	1.000	242	0%	504	16.3%	189	0%	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACTA1	58	genome.wustl.edu	37	1	229568857	229568857	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100.3	-1	reviewed	p.C2	0.959	36	0%	63	14.3%	0	-	-	-	-	NULL
ABCB10	23456	genome.wustl.edu	37	1	229666038	229666038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012089.2	-1	reviewed	p.P518L	1.000	189	0%	541	16.3%	7	0%	benign(0.322)	tolerated(0.11)	neutral(0.373)	superfamily_SSF52540
ABCB10	23456	genome.wustl.edu	37	1	229666058	229666058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012089.2	-1	reviewed	p.Q511H	1.000	210	0%	574	16.9%	6	0%	benign(0.004)	tolerated(0.07)	neutral(0.319)	superfamily_SSF52540
TAF5L	27097	genome.wustl.edu	37	1	229738425	229738425	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014409.3	-1	reviewed	p.Y163	0.890	121	0%	370	19.7%	6	0%	-	-	-	HMMPfam_TFIID_90kDa
URB2	9816	genome.wustl.edu	37	1	229768082	229768082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014777.2	+1	provisional	p.D65N	1.000	30	0%	78	26.9%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
URB2	9816	genome.wustl.edu	37	1	229773774	229773774	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014777.2	+1	provisional	p.D1138	0.000	31	3.2%	65	15.4%	8	0%	-	-	-	NULL
GALNT2	2590	genome.wustl.edu	37	1	230384969	230384969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004481.3	+1	reviewed	p.T286M	1.000	75	0%	110	16.4%	34	0%	probably_damaging(0.957)	tolerated(0.19)	neutral(0.450)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT2	2590	genome.wustl.edu	37	1	230391031	230391031	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004481.3	+1	reviewed	p.H359	0.850	69	0%	110	23.6%	55	0%	benign(0.008)	tolerated(0.06)	neutral(0.323)	superfamily_Nucleotide-diphospho-sugar transferases
PGBD5	79605	genome.wustl.edu	37	1	230472879	230472879	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024554.3	-1	reviewed	p.T380	0.937	89	0%	135	20.7%	1	0%	-	-	-	NULL
PGBD5	79605	genome.wustl.edu	37	1	230492794	230492794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024554.3	-1	reviewed	p.V232A	1.000	46	0%	101	17.8%	0	-	possibly_damaging(0.496)	deleterious(0.02)	deleterious(0.548)	NULL
AGT	183	genome.wustl.edu	37	1	230841889	230841889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000029.3	-1	reviewed	p.S305N	0.995	85	0%	179	19%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CAPN9	10753	genome.wustl.edu	37	1	230898468	230898468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006615.2	+1	reviewed	p.V158I	1.000	102	0%	121	12.4%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN9	10753	genome.wustl.edu	37	1	230903323	230903323	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006615.2	+1	reviewed	p.S191	1.000	196	0%	354	18.4%	0	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
TTC13	79573	genome.wustl.edu	37	1	231060654	231060654	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024525.4	-1	validated	p.R552*	1.000	300	0%	451	21.5%	24	0%	-	-	-	NULL
TTC13	79573	genome.wustl.edu	37	1	231067541	231067541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024525.4	-1	validated	p.L356I	1.000	242	0%	475	15.4%	8	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like
TRIM67	440730	genome.wustl.edu	37	1	231335933	231335933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004342.3	+1	validated	p.R435C	1.000	108	0%	204	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00502
TRIM67	440730	genome.wustl.edu	37	1	231344959	231344959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004342.3	+1	validated	p.R696C	1.000	79	0%	86	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
DISC1	27185	genome.wustl.edu	37	1	232172483	232172483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018662.2	+1	reviewed	p.A824V	1.000	45	0%	76	25%	2	0%	benign(0.04)	deleterious(0.04)	neutral(0.351)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232561507	232561507	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020808.3	-1	validated	p.T1486	0.003	57	0%	121	21.5%	2	0%	-	-	-	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232596693	232596693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020808.3	-1	validated	p.R1012H	1.000	100	0%	200	16%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SIPA1L2	57568	genome.wustl.edu	37	1	232626709	232626709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020808.3	-1	validated	p.V573I	1.000	181	0%	296	18.6%	4	0%	possibly_damaging(0.842)	tolerated(0.14)	deleterious(0.572)	superfamily_Rap/Ran-GAP (Pfam 02145)
KIAA1383	54627	genome.wustl.edu	37	1	232941106	232941106	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019090.2	+1	validated	p.R113*	0.001	54	0%	111	23.4%	0	-	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233136131	233136131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014801.3	-1	provisional	p.R1750W	0.990	87	0%	173	20.8%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pecanex_C
B3GALNT2	148789	genome.wustl.edu	37	1	235622014	235622014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152490.2	-1	validated	p.A308T	1.000	149	0%	349	17.5%	28	0%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_Galactosyl_T
LYST	1130	genome.wustl.edu	37	1	235878638	235878638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000081.2	-1	reviewed	p.R3216H	1.000	67	0%	165	18.2%	5	0%	probably_damaging(0.976)	-	-	HMMPfam_Beach,superfamily_BEACH domain
LYST	1130	genome.wustl.edu	37	1	235922848	235922848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000081.2	-1	reviewed	p.R2102H	1.000	139	0%	267	16.5%	0	-	probably_damaging(0.988)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235972457	235972457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000081.2	-1	reviewed	p.A554V	1.000	186	0%	376	15.4%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
NID1	4811	genome.wustl.edu	37	1	236142393	236142393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002508.2	-1	reviewed	p.A1175V	0.992	40	0%	96	10.4%	18	0%	benign(0.011)	tolerated(0.22)	neutral(0.043)	HMMSmart_SM00135,superfamily_YWTD domain
NID1	4811	genome.wustl.edu	37	1	236154248	236154248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002508.2	-1	reviewed	p.R956C	0.988	133	0%	279	21.1%	6	0%	possibly_damaging(0.942)	deleterious(0.04)	deleterious(0.736)	superfamily_YWTD domain
EDARADD	128178	genome.wustl.edu	37	1	236645845	236645845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145861.2	+1	reviewed	p.L182F	1.000	98	0%	180	18.3%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Death
LGALS8	3964	genome.wustl.edu	37	1	236706248	236706248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006499.3	+1	reviewed	p.A195T	0.109	172	0%	331	14.5%	39	0%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
LGALS8	3964	genome.wustl.edu	37	1	236711414	236711414	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006499.3	+1	reviewed	p.L345	0.018	155	0%	268	18.3%	62	0%	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
MTR	4548	genome.wustl.edu	37	1	237057711	237057711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000254.2	+1	reviewed	p.A1087T	0.994	126	0.8%	211	12.8%	20	0%	possibly_damaging(0.802)	deleterious(0)	deleterious(0.746)	superfamily_Methionine synthase activation domain-like
RYR2	6262	genome.wustl.edu	37	1	237608797	237608797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.V423I	0.739	312	0%	571	16.8%	0	-	benign(0.15)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237838058	237838058	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.T2914	0.879	40	0%	122	16.4%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237865325	237865325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.A3139T	1.000	33	0%	86	17.4%	0	-	benign(0.19)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237948243	237948243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.P4411S	0.991	44	0%	90	20%	0	-	benign(0.004)	-	-	HMMPfam_RR_TM4-6
RYR2	6262	genome.wustl.edu	37	1	237969443	237969443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.L4720I	1.000	102	0%	169	14.2%	0	-	probably_damaging(0.994)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237972324	237972324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.D4808N	1.000	387	0%	684	18.9%	2	0%	probably_damaging(0.999)	-	-	HMMPfam_Ion_trans
RYR2	6262	genome.wustl.edu	37	1	237995903	237995903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001035.2	+1	reviewed	p.A4954T	1.000	150	0%	271	11.8%	0	-	probably_damaging(0.998)	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240371838	240371838	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020066.4	+1	validated	p.G1242	0.056	22	0%	41	26.8%	0	-	-	-	-	HMMSmart_FH2,HMMPfam_Drf_FH1,superfamily_FH2_actin_bd
FMN2	56776	genome.wustl.edu	37	1	240637436	240637436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020066.4	+1	validated	p.K1717N	1.000	37	0%	124	16.9%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
RGS7	6000	genome.wustl.edu	37	1	240990434	240990434	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002924.4	-1	validated	p.K216	0.991	99	0%	178	17.4%	1	0%	-	-	-	NULL
FH	2271	genome.wustl.edu	37	1	241667492	241667492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000143.2	-1	reviewed	p.A320T	1.000	119	0%	301	13.6%	135	0%	benign(0.043)	deleterious(0.01)	neutral(0.408)	HMMPfam_Lyase_1,superfamily_L-aspartase-like
FH	2271	genome.wustl.edu	37	1	241680489	241680489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000143.2	-1	reviewed	p.R87H	1.000	152	0%	335	14.6%	118	0.8%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_Lyase_1,superfamily_L-aspartase-like
OPN3	23596	genome.wustl.edu	37	1	241757780	241757780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014322.2	-1	reviewed	p.D387N	0.464	174	0%	404	25.5%	16	0%	possibly_damaging(0.918)	deleterious(0.05)	deleterious(0.714)	NULL
CHML	1122	genome.wustl.edu	37	1	241798392	241798392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001821.3	-1	reviewed	p.G226D	0.994	159	0%	413	14.8%	14	0%	probably_damaging(0.997)	tolerated(0.37)	deleterious(0.485)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
CHML	1122	genome.wustl.edu	37	1	241798619	241798619	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001821.3	-1	reviewed	p.S150	0.000	218	0%	550	16.4%	13	0%	-	-	-	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
MAP1LC3C	440738	genome.wustl.edu	37	1	242159683	242159683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004343.2	-1	validated	p.R76C	1.000	48	0%	110	17.3%	0	-	benign(0.088)	deleterious(0)	neutral(0.451)	HMMPfam_MAP1_LC3,superfamily_SSF54236
CEP170	9859	genome.wustl.edu	37	1	243349298	243349298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014812.2	-1	reviewed	p.S450L	1.000	108	0%	299	18.4%	7	0%	possibly_damaging(0.916)	tolerated(0.79)	neutral(0.368)	NULL
AKT3	10000	genome.wustl.edu	37	1	243727071	243727071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005465.3	-1	reviewed	p.A300V	1.000	162	0%	298	19.8%	4	0%	benign(0.003)	deleterious(0)	neutral(0.445)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKT3	10000	genome.wustl.edu	37	1	243809299	243809299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005465.3	-1	reviewed	p.L109M	1.000	164	0%	277	17%	0	-	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	HMMSmart_SM00233,superfamily_PH domain-like
ZNF238	10472	genome.wustl.edu	37	1	244217379	244217379	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_205768.2	+1	validated	p.L101	1.000	46	0%	123	12.2%	9	0%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
C1orf100	200159	genome.wustl.edu	37	1	244528036	244528036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012970.1	+1	predicted	p.R12C	0.445	194	0%	270	19.6%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
ADSS	159	genome.wustl.edu	37	1	244580970	244580970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001126.2	-1	reviewed	p.V344I	0.993	130	0%	306	17%	142	0%	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245772617	245772617	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018012.3	+1	provisional	p.G567	0.999	24	0%	47	21.3%	3	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TFB2M	64216	genome.wustl.edu	37	1	246711868	246711868	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022366.2	-1	validated	p.P279	0.000	99	0%	235	13.2%	22	0%	-	-	-	HMMPfam_RrnaAD,superfamily_SSF53335
OR2C3	81472	genome.wustl.edu	37	1	247695289	247695289	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198074.4	-1	validated	p.I175	0.001	25	0%	110	21.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2AK2	391191	genome.wustl.edu	37	1	248128896	248128896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004491.1	+1	provisional	p.Y88C	0.001	699	0%	1162	17.7%	0	-	benign(0.029)	deleterious(0.04)	neutral(0.350)	HMMPfam_7tm_1,superfamily_SSF81321
OR2AK2	391191	genome.wustl.edu	37	1	248129571	248129571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004491.1	+1	provisional	p.T313M	0.000	331	0%	468	18.8%	0	-	benign(0.037)	tolerated(0.66)	neutral(0.005)	superfamily_SSF81321
OR2L2	26246	genome.wustl.edu	37	1	248201923	248201923	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004686.2	+1	provisional	p.A118	0.996	411	0%	922	16.2%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR2L2	26246	genome.wustl.edu	37	1	248201940	248201940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004686.2	+1	provisional	p.A124V	1.000	399	0%	897	19.2%	0	-	benign(0.277)	deleterious(0)	deleterious(0.474)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR2L3	391192	genome.wustl.edu	37	1	248224197	248224197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004687.1	+1	provisional	p.Y72H	0.001	1081	0%	2066	20%	0	-	benign(0.008)	tolerated(0.15)	neutral(0.241)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2L3	391192	genome.wustl.edu	37	1	248224883	248224883	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004687.1	+1	provisional	p.L300	0.091	205	0%	337	16.9%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2M5	127059	genome.wustl.edu	37	1	248308900	248308900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004690.1	+1	provisional	p.L151M	0.000	755	0.1%	1306	15.2%	0	-	possibly_damaging(0.714)	tolerated(0.19)	neutral(0.307)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T33	391195	genome.wustl.edu	37	1	248437000	248437000	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004695.1	-1	provisional	p.G39	0.381	343	0%	621	12.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458472	248458472	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004692.1	-1	provisional	p.Q137*	0.000	122	0%	230	18.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M7	391196	genome.wustl.edu	37	1	248487669	248487669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004691.1	-1	provisional	p.L68I	0.003	634	0%	1412	16.9%	0	-	possibly_damaging(0.68)	tolerated(0.17)	neutral(0.301)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512968	248512968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001918.1	+1	provisional	p.A298T	0.102	281	0%	387	19.4%	0	-	possibly_damaging(0.68)	deleterious(0.04)	deleterious(0.591)	superfamily_SSF81321
OR2T5	401993	genome.wustl.edu	37	1	248652117	248652117	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004697.1	+1	provisional	p.A76	0.004	498	0%	1063	12.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SH3BP5L	80851	genome.wustl.edu	37	1	249106375	249106375	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030645.1	-1	provisional	p.E302	0.002	12	0%	22	27.3%	18	5.5%	-	-	-	NULL
SH3BP5L	80851	genome.wustl.edu	37	1	249108764	249108764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030645.1	-1	provisional	p.V141I	1.000	25	0%	51	31.4%	42	0%	possibly_damaging(0.797)	tolerated(0.52)	neutral(0.308)	HMMPfam_SH3BP5
LOC100130262	100130262	genome.wustl.edu	37	1	249142523	249142523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001724354.2	-1	model	p.A12T	0.075	28	0%	53	34%	40	0%	-	-	-	NULL
ZNF692	55657	genome.wustl.edu	37	1	249144888	249144888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136036.1	-1	provisional	p.P421S	1.000	47	0%	88	18.2%	35	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF57667
PGBD2	267002	genome.wustl.edu	37	1	249210979	249210979	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170725.2	+1	validated	p.R66*	0.000	36	0%	197	17.8%	7	0%	-	-	-	NULL
PXDN	7837	genome.wustl.edu	37	2	1643104	1643104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012293.1	-1	validated	p.T1348I	0.000	51	0%	46	13%	54	0%	benign(0.006)	tolerated(0.13)	neutral(0.253)	NULL
PXDN	7837	genome.wustl.edu	37	2	1664725	1664725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012293.1	-1	validated	p.A589T	0.007	30	0%	38	28.9%	33	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYT1L	23040	genome.wustl.edu	37	2	1983513	1983513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015025.2	-1	validated	p.R13W	1.000	30	0%	39	38.5%	0	-	unknown(0)	deleterious(0)	-	NULL
ALLC	55821	genome.wustl.edu	37	2	3727545	3727545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018436.3	+1	validated	p.A87T	0.719	79	0%	86	12.8%	0	-	benign(0.293)	deleterious(0)	deleterious(0.535)	superfamily_Gal_bind_like,HMMPfam_Allantoicase
KIDINS220	57498	genome.wustl.edu	37	2	8934092	8934092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020738.2	-1	validated	p.A375V	1.000	305	0.3%	290	30%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CPSF3	51692	genome.wustl.edu	37	2	9611524	9611524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016207.2	+1	provisional	p.V637I	0.959	107	0%	195	24.6%	222	0%	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
ATP6V1C2	245973	genome.wustl.edu	37	2	10917779	10917779	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039362.1	+1	reviewed	p.P298	1.000	105	0%	96	32.3%	0	-	-	-	-	HMMPfam_V-ATPase_C
LOC650157	650157	genome.wustl.edu	37	2	11492032	11492032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001129774.2	+1	model	p.R94C	0.647	80	0%	114	28.9%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
GREB1	9687	genome.wustl.edu	37	2	11780424	11780424	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014668.3	+1	reviewed	p.T1898	0.982	91	0%	99	30.3%	4	0%	-	-	-	NULL
TRIB2	28951	genome.wustl.edu	37	2	12880597	12880597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021643.3	+1	reviewed	p.V237M	1.000	66	0%	87	32.2%	5	0%	benign(0.115)	tolerated(0.73)	neutral(0.010)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NBAS	51594	genome.wustl.edu	37	2	15359051	15359051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015909.2	-1	validated	p.R2093Q	1.000	49	0%	71	16.9%	29	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
NBAS	51594	genome.wustl.edu	37	2	15427292	15427292	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000442506	-1	known	p.A729V	0.000	101	0%	108	26.9%	21	0%	-	-	-	NULL
NBAS	51594	genome.wustl.edu	37	2	15555769	15555769	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000429842	-1	known	p.A44T	0.304	286	0%	309	25.2%	4	0%	-	-	-	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17697479	17697479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099218.2	-1	provisional	p.G735D	0.000	254	0%	248	38.3%	0	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
MSGN1	343930	genome.wustl.edu	37	2	17997946	17997946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105569.1	+1	provisional	p.E54G	1.000	85	0%	83	32.5%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
RDH14	57665	genome.wustl.edu	37	2	18736600	18736600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020905.3	-1	validated	p.A290T	1.000	186	0%	272	28.3%	41	0%	possibly_damaging(0.619)	deleterious(0)	deleterious(0.660)	superfamily_NAD(P)-binding Rossmann-fold domains
NT5C1B	93034	genome.wustl.edu	37	2	18745319	18745319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002006.1	-1	validated	p.R526W	1.000	82	0%	137	38%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_5-nucleotidase
OSR1	130497	genome.wustl.edu	37	2	19553399	19553399	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145260.2	-1	validated	p.T56	0.976	50	0%	35	28.6%	2	0%	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21232176	21232176	+	Nonsense_Mutation	SNP	G	G	A	rs121918390		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000384.2	-1	reviewed	p.R2522*	0.396	240	0.4%	275	25.5%	0	-	-	-	-	NULL
ATAD2B	54454	genome.wustl.edu	37	2	24008934	24008934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017552.1	-1	validated	p.R979H	1.000	77	0%	69	29%	10	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,superfamily_P-loop containing nucleoside triphosphate hydrolases
MFSD2B	388931	genome.wustl.edu	37	2	24246468	24246468	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080473.1	+1	provisional	p.D395	0.734	27	0%	39	35.9%	0	-	-	-	-	superfamily_MFS_gen_substrate_transporter
NCOA1	8648	genome.wustl.edu	37	2	24928023	24928023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003743.4	+1	reviewed	p.A340T	1.000	212	0%	274	32.1%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PYP-like sensor domain (PAS domain)
DNMT3A	1788	genome.wustl.edu	37	2	25470555	25470555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022552.3	-1	reviewed	p.P307S	1.000	49	0%	62	40.3%	46	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
DTNB	1838	genome.wustl.edu	37	2	25851118	25851118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021907.3	-1	reviewed	p.R95H	1.000	45	0%	86	15.1%	35	0%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_efhand_1,superfamily_EF-hand
LOC729769	729769	genome.wustl.edu	37	2	26217917	26217917	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001131246.3	+1	model	p.C103	1.000	114	0%	257	31.1%	0	-	-	-	-	HMMPfam_UCR_hinge,superfamily_Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
OTOF	9381	genome.wustl.edu	37	2	26690004	26690004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194248.2	-1	reviewed	p.G1442D	0.968	45	0%	36	25%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
DPYSL5	56896	genome.wustl.edu	37	2	27156176	27156176	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020134.3	+1	validated	p.D255	0.098	114	0%	119	36.1%	0	-	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
SLC5A6	8884	genome.wustl.edu	37	2	27424303	27424303	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021095.2	-1	validated	p.R521	0.018	56	0%	104	26%	65	0%	-	-	-	NULL
CAD	790	genome.wustl.edu	37	2	27448753	27448753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004341.3	+1	reviewed	p.E601K	1.000	63	0%	87	23%	26	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
CAD	790	genome.wustl.edu	37	2	27455514	27455514	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004341.3	+1	reviewed	p.S948	0.854	88	0%	151	31.8%	22	0%	-	-	-	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like
CAD	790	genome.wustl.edu	37	2	27460618	27460618	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000458503	+1	known	p.R184H	0.930	35	0%	37	43.2%	36	0%	-	-	-	superfamily_Metallo-dependent hydrolases
SLC30A3	7781	genome.wustl.edu	37	2	27478210	27478210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003459.4	-1	validated	p.C379	1.000	18	0%	15	33.3%	0	-	-	-	-	NULL
SNX17	9784	genome.wustl.edu	37	2	27596783	27596783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014748.2	+1	reviewed	p.G126E	1.000	27	0%	42	35.7%	117	0%	possibly_damaging(0.948)	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27799471	27799471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032266.3	+1	validated	p.G11D	0.005	56	0%	103	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPN1	11321	genome.wustl.edu	37	2	27861846	27861846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007266.3	+1	reviewed	p.N236S	1.000	151	0%	182	13.7%	66	0%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_ATP_bind_1
EHD3	30845	genome.wustl.edu	37	2	31489221	31489221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014600.2	+1	validated	p.G420D	1.000	31	0%	46	34.8%	6	0%	benign(0.364)	tolerated(0.09)	neutral(0.412)	NULL
SPAST	6683	genome.wustl.edu	37	2	32379499	32379499	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014946.3	+1	reviewed	p.S595	0.927	93	0%	109	36.7%	35	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRC4	58484	genome.wustl.edu	37	2	32475766	32475766	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000360906	-1	known	p.S389	0.994	110	0%	131	17.6%	1	0%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32620633	32620633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016252.3	+1	reviewed	p.V336I	1.000	156	0%	136	26.5%	3	0%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	HMMPfam_BIR,HMMSmart_SM00238,superfamily_Inhibitor of apoptosis (IAP) repeat
BIRC6	57448	genome.wustl.edu	37	2	32640863	32640863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016252.3	+1	reviewed	p.R835Q	1.000	161	0%	188	12.8%	4	0%	probably_damaging(0.987)	tolerated(0.41)	neutral(0.452)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32750576	32750576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016252.3	+1	reviewed	p.R3934H	1.000	91	0%	108	32.4%	28	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32770829	32770829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016252.3	+1	reviewed	p.A4238T	1.000	255	0%	263	33.1%	67	0%	possibly_damaging(0.64)	tolerated(0.62)	neutral(0.228)	NULL
LTBP1	4052	genome.wustl.edu	37	2	33174009	33174009	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206943.2	+1	reviewed	p.K188fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_EGF/Laminin
LTBP1	4052	genome.wustl.edu	37	2	33335707	33335707	+	Missense_Mutation	SNP	G	G	A	rs117874429	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206943.2	+1	reviewed	p.V308M	0.976	250	0%	278	27%	24	0%	benign(0.009)	tolerated(0.18)	neutral(0.057)	NULL
LTBP1	4052	genome.wustl.edu	37	2	33622300	33622300	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206943.2	+1	reviewed	p.C1646	0.316	85	0%	112	27.7%	166	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
STRN	6801	genome.wustl.edu	37	2	37076877	37076877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003162.2	-1	validated	p.G718D	1.000	157	0%	219	26.5%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HEATR5B	54497	genome.wustl.edu	37	2	37232860	37232860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019024.1	-1	validated	p.P1607L	1.000	121	0%	109	11.9%	27	0%	possibly_damaging(0.891)	tolerated(0.07)	deleterious(0.669)	superfamily_ARM repeat
EIF2AK2	5610	genome.wustl.edu	37	2	37347267	37347267	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135651.1	-1	validated	p.C361	1.000	176	0%	167	33.5%	36	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
QPCT	25797	genome.wustl.edu	37	2	37594548	37594548	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012413.3	+1	reviewed	p.G240	1.000	120	0%	217	11.1%	11	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
DHX57	90957	genome.wustl.edu	37	2	39095404	39095404	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198963.1	-1	provisional	p.G48	0.975	101	0%	111	26.1%	13	0%	-	-	-	NULL
EML4	27436	genome.wustl.edu	37	2	42531666	42531666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019063.3	+1	validated	p.V648M	1.000	145	0%	188	26.1%	13	0%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DYNC2LI1	51626	genome.wustl.edu	37	2	44028016	44028016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016008.2	+1	validated	p.R231C	1.000	101	0%	133	15%	38	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRPPRC	10128	genome.wustl.edu	37	2	44173257	44173257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133259.3	-1	reviewed	p.E735D	0.968	184	0%	174	21.3%	110	0%	possibly_damaging(0.667)	tolerated(0.63)	neutral(0.239)	HMMPfam_PPR,superfamily_SSF48452
LRPPRC	10128	genome.wustl.edu	37	2	44173295	44173295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133259.3	-1	reviewed	p.R723*	1.000	164	0%	155	31%	87	0%	-	-	-	HMMPfam_PPR,superfamily_SSF48452
PPM1B	5495	genome.wustl.edu	37	2	44429167	44429167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002706.4	+1	reviewed	p.D277N	1.000	93	0%	156	25%	80	0%	possibly_damaging(0.63)	deleterious(0.04)	deleterious(0.569)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
SRBD1	55133	genome.wustl.edu	37	2	45780795	45780795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018079.4	-1	validated	p.R495H	1.000	256	0%	270	23.3%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EPAS1	2034	genome.wustl.edu	37	2	46609713	46609713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001430.4	+1	reviewed	p.L813M	0.290	70	0%	43	11.6%	14	0%	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
MCFD2	90411	genome.wustl.edu	37	2	47135054	47135054	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139279.4	-1	reviewed	p.S68	0.046	43	0%	50	30%	62	0%	-	-	-	superfamily_EF-hand
TTC7A	57217	genome.wustl.edu	37	2	47220629	47220629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020458.2	+1	validated	p.R269W	0.780	118	0%	109	38.5%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
FSHR	2492	genome.wustl.edu	37	2	49190103	49190103	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000145.3	-1	reviewed	p.S619	1.000	138	0%	118	30.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR75	10936	genome.wustl.edu	37	2	54081216	54081216	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006794.2	-1	validated	p.A226	0.949	70	0%	97	40.2%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SPTBN1	6711	genome.wustl.edu	37	2	54872430	54872430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003128.2	+1	reviewed	p.A1445V	1.000	160	0%	162	32.1%	89	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CCDC88A	55704	genome.wustl.edu	37	2	55559736	55559736	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135597.1	-1	validated	p.R941*	0.998	120	0%	118	31.4%	2	0%	-	-	-	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55582840	55582840	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135597.1	-1	validated	p.P225	1.000	106	0%	142	33.1%	2	0%	-	-	-	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55591108	55591108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135597.1	-1	validated	p.A155V	1.000	48	0%	64	25%	1	0%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
EFEMP1	2202	genome.wustl.edu	37	2	56108799	56108799	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039348.1	-1	reviewed	p.S196	0.999	217	0%	176	27.3%	5	0%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
REL	5966	genome.wustl.edu	37	2	61147229	61147229	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002908.2	+1	validated	p.L303	0.994	326	0%	367	36.8%	3	0%	-	-	-	superfamily_Ig_E-set
USP34	9736	genome.wustl.edu	37	2	61431422	61431422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014709.3	-1	validated	p.C3118Y	1.000	126	0%	138	24.6%	68	0%	possibly_damaging(0.537)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61542018	61542018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014709.3	-1	validated	p.Y1125C	1.000	240	0%	290	12.1%	13	0%	probably_damaging(1)	-	-	NULL
EHBP1	23301	genome.wustl.edu	37	2	63182712	63182712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015252.3	+1	reviewed	p.A828T	1.000	108	0%	146	33.6%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EHBP1	23301	genome.wustl.edu	37	2	63223797	63223797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015252.3	+1	reviewed	p.S1071N	1.000	122	0%	122	26.2%	25	0%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
OTX1	5013	genome.wustl.edu	37	2	63282998	63282998	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014562.2	+1	reviewed	p.S204	0.960	16	0%	18	27.8%	1	0%	-	-	-	HMMPfam_TF_Otx
SLC1A4	6509	genome.wustl.edu	37	2	65237867	65237867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003038.3	+1	validated	p.A257V	1.000	128	0%	142	28.9%	25	0%	unknown(0)	deleterious(0.04)	-	HMMPfam_SDF
WDR92	116143	genome.wustl.edu	37	2	68368888	68368888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138458.2	-1	validated	p.P152L	1.000	358	0%	397	33.5%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
PNO1	56902	genome.wustl.edu	37	2	68389725	68389725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020143.2	+1	provisional	p.A184T	0.998	134	0%	214	30.8%	93	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
FBXO48	554251	genome.wustl.edu	37	2	68691493	68691493	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024680.1	-1	provisional	p.L106	0.270	147	0%	239	29.3%	3	0%	-	-	-	superfamily_SSF81383
ANTXR1	84168	genome.wustl.edu	37	2	69300171	69300171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032208.2	+1	reviewed	p.V144I	1.000	285	0%	258	27.5%	42	0%	probably_damaging(0.996)	tolerated(0.8)	neutral(0.462)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
C2orf42	54980	genome.wustl.edu	37	2	70377563	70377563	+	Silent	SNP	C	C	T	rs181408789	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017880.1	-1	predicted	p.A550	0.015	36	0%	71	29.6%	13	0%	-	-	-	NULL
TIA1	7072	genome.wustl.edu	37	2	70456215	70456215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022173.2	-1	reviewed	p.V96I	1.000	99	0%	132	34.1%	63	0%	benign(0)	tolerated(0.18)	neutral(0.056)	superfamily_RNA-binding domain RBD
CLEC4F	165530	genome.wustl.edu	37	2	71046981	71046981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173535.2	-1	validated	p.P35L	0.000	48	0%	65	32.3%	0	-	benign(0.002)	tolerated(1)	-	NULL
CD207	50489	genome.wustl.edu	37	2	71062878	71062878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015717.2	-1	validated	p.A10V	0.130	31	0%	28	32.1%	0	-	benign(0.071)	deleterious(0)	neutral(0.450)	NULL
ANKRD53	79998	genome.wustl.edu	37	2	71209079	71209079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001115116.1	+1	validated	p.G211S	0.929	31	0%	56	28.6%	2	0%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MPHOSPH10	10199	genome.wustl.edu	37	2	71361845	71361845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005791.1	+1	reviewed	p.A339V	0.031	162	0%	297	29%	66	0%	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_Mpp10
ZNF638	27332	genome.wustl.edu	37	2	71658542	71658542	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014972.1	+1	reviewed	p.A1912	0.004	137	0%	171	32.2%	96	0%	-	-	-	NULL
DYSF	8291	genome.wustl.edu	37	2	71838614	71838614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130987.1	+1	reviewed	p.R1360Q	1.000	62	0%	79	17.7%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ALMS1	7840	genome.wustl.edu	37	2	73680007	73680007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015120.4	+1	reviewed	p.V2117A	0.000	76	0%	80	15%	5	0%	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73681187	73681187	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015120.4	+1	reviewed	p.R2510	0.984	51	0%	50	24%	19	0%	-	-	-	NULL
SLC4A5	57835	genome.wustl.edu	37	2	74480226	74480226	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021196.3	-1	reviewed	p.R381	0.493	104	0%	91	31.9%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
DCTN1	1639	genome.wustl.edu	37	2	74589844	74589844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004082.3	-1	reviewed	p.P1181L	1.000	62	0%	40	12.5%	217	0%	probably_damaging(0.956)	tolerated(0.08)	deleterious(0.700)	NULL
TTC31	64427	genome.wustl.edu	37	2	74719495	74719495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022492.4	+1	validated	p.A362T	1.000	59	0%	77	33.8%	9	0%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMSmart_SM00028,superfamily_TPR-like
LOXL3	84695	genome.wustl.edu	37	2	74762733	74762733	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032603.2	-1	reviewed	p.Y466	0.852	181	0%	221	41.2%	5	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
LOXL3	84695	genome.wustl.edu	37	2	74779554	74779554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032603.2	-1	reviewed	p.C70G	1.000	18	0%	29	31%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
HK2	3099	genome.wustl.edu	37	2	75117977	75117977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000189.4	+1	reviewed	p.V888A	1.000	385	0%	336	31%	90	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Hexokinase_2,superfamily_SSF53067
DNAH6	1768	genome.wustl.edu	37	2	84777063	84777063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001370.1	+1	validated	p.T456M	0.902	191	0%	152	41.4%	0	-	possibly_damaging(0.937)	tolerated(0.09)	deleterious(0.679)	NULL
RETSAT	54884	genome.wustl.edu	37	2	85570442	85570442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017750.3	-1	validated	p.A586T	0.349	98	0%	98	24.5%	34	0%	benign(0.047)	tolerated(0.22)	neutral(0.045)	NULL
CAPG	822	genome.wustl.edu	37	2	85622687	85622687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001747.2	-1	reviewed	p.R319C	1.000	51	0%	37	27%	202	0%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
VAMP5	10791	genome.wustl.edu	37	2	85820104	85820104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006634.2	+1	reviewed	p.A59T	1.000	66	0%	117	29.1%	71	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Synaptobrevin
POLR1A	25885	genome.wustl.edu	37	2	86257456	86257456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015425.3	-1	validated	p.A1548T	1.000	150	0.7%	156	23.1%	31	3.2%	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1A	25885	genome.wustl.edu	37	2	86317036	86317036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015425.3	-1	validated	p.P150L	0.630	74	0%	91	16.5%	12	0%	unknown(0)	-	-	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
PTCD3	55037	genome.wustl.edu	37	2	86352950	86352950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017952.5	+1	validated	p.A300S	1.000	59	0%	84	31%	61	0%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	NULL
IMMT	10989	genome.wustl.edu	37	2	86378537	86378537	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000419070	-1	known	p.A283T	1.000	171	0%	247	16.6%	99	0%	-	-	-	HMMPfam_Mitofilin
KDM3A	55818	genome.wustl.edu	37	2	86709673	86709673	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018433.5	+1	reviewed	p.R926	1.000	249	0%	201	34.3%	67	0%	-	-	-	NULL
KDM3A	55818	genome.wustl.edu	37	2	86718091	86718091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018433.5	+1	reviewed	p.R1221C	1.000	280	0%	275	70.9%	203	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
LOC730268	730268	genome.wustl.edu	37	2	88032080	88032080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342213.1	+1	model	p.G554C	1.000	258	0%	211	10.9%	10	0%	-	-	-	HMMPfam_PC_rep
THNSL2	55258	genome.wustl.edu	37	2	88474907	88474907	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018271.3	+1	validated	p.V186	0.997	81	0%	43	16.3%	24	0%	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
THNSL2	55258	genome.wustl.edu	37	2	88478459	88478459	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018271.3	+1	validated	p.T243	0.000	308	0%	243	27.2%	25	0%	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
EIF2AK3	9451	genome.wustl.edu	37	2	88885402	88885402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004836.5	-1	reviewed	p.T536I	1.000	227	0%	265	32.8%	28	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RPIA	22934	genome.wustl.edu	37	2	89035244	89035244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144563.2	+1	reviewed	p.A196T	1.000	455	0%	399	38.1%	48	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rib_5-P_isom_A,superfamily_SSF100950
IGKV2-24	28923	genome.wustl.edu	37	2	89476590	89476590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000484817	-1	known	p.G9R	0.031	95	0%	69	23.2%	0	-	probably_damaging(0.989)	tolerated(0.36)	neutral(0.460)	NULL
FAHD2A	51011	genome.wustl.edu	37	2	96071507	96071507	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016044.2	+1	validated	p.T67	0.694	68	0%	81	18.5%	53	0%	-	-	-	NULL
FAHD2A	51011	genome.wustl.edu	37	2	96072870	96072870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016044.2	+1	validated	p.P143S	1.000	113	0%	99	27.3%	32	0%	possibly_damaging(0.598)	deleterious(0.04)	deleterious(0.556)	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel
LOC400986	400986	genome.wustl.edu	37	2	96519526	96519526	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001717763.2	-1	model	p.S1345	0.000	41	0%	50	16%	2	0%	-	-	-	NULL
LOC400986	400986	genome.wustl.edu	37	2	96521616	96521616	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001717763.2	-1	model	p.Q1117*	0.635	112	0%	114	37.7%	0	-	-	-	-	NULL
ASTL	431705	genome.wustl.edu	37	2	96799759	96799759	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002036.3	-1	validated	p.W94*	1.000	11	0%	19	26.3%	0	-	-	-	-	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
STARD7	56910	genome.wustl.edu	37	2	96861114	96861114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020151.3	-1	validated	p.R155H	1.000	21	0%	31	22.6%	146	0.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
SNRNP200	23020	genome.wustl.edu	37	2	96947557	96947557	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014014.3	-1	reviewed	p.I1673	0.951	53	0%	63	23.8%	200	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNRNP200	23020	genome.wustl.edu	37	2	96956457	96956457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014014.3	-1	reviewed	p.R840C	1.000	204	0.5%	207	32.4%	103	0%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
LMAN2L	81562	genome.wustl.edu	37	2	97373088	97373088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142292.1	-1	validated	p.V329I	1.000	14	0%	16	37.5%	21	0%	benign(0.198)	tolerated(0.28)	neutral(0.051)	NULL
LMAN2L	81562	genome.wustl.edu	37	2	97377666	97377666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142292.1	-1	validated	p.A213S	1.000	78	0%	114	27.2%	33	0%	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
CNNM4	26504	genome.wustl.edu	37	2	97427243	97427243	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020184.3	+1	reviewed	p.L169	0.999	83	0%	83	30.1%	6	0%	-	-	-	NULL
ACTR1B	10120	genome.wustl.edu	37	2	98275867	98275867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005735.3	-1	reviewed	p.R88H	1.000	31	0%	54	25.9%	81	0%	benign(0.026)	deleterious(0.02)	neutral(0.384)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
TMEM131	23505	genome.wustl.edu	37	2	98378623	98378623	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015348.1	-1	validated	p.N1588	0.949	61	0%	77	11.7%	50	0%	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99688282	99688282	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025244.2	-1	validated	p.Q332*	0.958	278	0%	252	31.3%	0	-	-	-	-	NULL
REV1	51455	genome.wustl.edu	37	2	100020164	100020164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016316.2	-1	reviewed	p.A1054T	0.000	213	0%	127	36.2%	24	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
REV1	51455	genome.wustl.edu	37	2	100081431	100081431	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016316.2	-1	reviewed	p.R3*	1.000	229	0%	385	36.9%	4	0%	-	-	-	NULL
AFF3	3899	genome.wustl.edu	37	2	100167968	100167968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025108.1	-1	reviewed	p.H1242Y	1.000	37	0%	31	29%	4	0%	possibly_damaging(0.441)	tolerated(0.07)	neutral(0.463)	HMMPfam_AF-4
LONRF2	164832	genome.wustl.edu	37	2	100925600	100925600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198461.3	-1	validated	p.A256V	0.000	110	0%	235	40.9%	3	0%	benign(0.043)	tolerated(0.26)	neutral(0.037)	HMMSmart_SM00028,superfamily_TPR-like
NPAS2	4862	genome.wustl.edu	37	2	101564788	101564788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002518.3	+1	reviewed	p.T152M	0.992	98	0%	135	32.6%	23	0%	probably_damaging(0.993)	tolerated(0.1)	deleterious(0.736)	HMMPfam_PAS
NPAS2	4862	genome.wustl.edu	37	2	101606764	101606764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002518.3	+1	reviewed	p.R625H	0.007	105	0%	116	37.1%	17	5.8%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
IL1R1	3554	genome.wustl.edu	37	2	102782660	102782660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000877.2	+1	reviewed	p.G192W	0.944	107	0%	153	15.7%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
SLC9A4	389015	genome.wustl.edu	37	2	103095549	103095549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001011552.3	+1	validated	p.A170T	0.986	110	0%	109	33%	0	-	benign(0.035)	tolerated(0.18)	neutral(0.058)	HMMPfam_Na_H_Exchanger
SLC9A2	6549	genome.wustl.edu	37	2	103274414	103274414	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003048.3	+1	validated	p.E227	1.000	188	0%	203	30.5%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
FHL2	2274	genome.wustl.edu	37	2	105979835	105979835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039492.2	-1	reviewed	p.R199C	1.000	23	0%	52	21.2%	72	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ST6GAL2	84620	genome.wustl.edu	37	2	107423301	107423301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142351.1	-1	validated	p.A475T	1.000	42	0%	59	18.6%	0	-	benign(0.37)	deleterious(0.05)	neutral(0.463)	HMMPfam_Glyco_transf_29
SLC5A7	60482	genome.wustl.edu	37	2	108627216	108627216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021815.2	+1	provisional	p.R548*	0.813	71	0%	86	36%	0	-	-	-	-	NULL
SULT1C4	27233	genome.wustl.edu	37	2	109002778	109002778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006588.2	+1	reviewed	p.S249L	0.000	168	0%	187	33.2%	2	0%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
RANBP2	5903	genome.wustl.edu	37	2	109357093	109357093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006267.4	+1	reviewed	p.A311T	1.000	576	0%	700	11.6%	9	0%	unknown(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109365400	109365400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006267.4	+1	reviewed	p.R363H	0.998	360	0%	511	33.5%	9	0%	unknown(0)	-	-	NULL
EDAR	10913	genome.wustl.edu	37	2	109513490	109513490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022336.3	-1	reviewed	p.S407I	1.000	35	0%	63	34.9%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Death,superfamily_DEATH_like
ANAPC1	64682	genome.wustl.edu	37	2	112545863	112545863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022662.2	-1	validated	p.A1583T	1.000	110	0.9%	81	14.8%	25	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112614426	112614426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022662.2	-1	validated	p.L466F	1.000	160	0%	205	29.8%	7	0%	benign(0.374)	tolerated(0.11)	neutral(0.391)	NULL
MERTK	10461	genome.wustl.edu	37	2	112686842	112686842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006343.2	+1	reviewed	p.Q69H	0.084	100	0%	98	38.8%	8	0%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113157317	113157317	+	Silent	SNP	G	G	A	rs2951266	byCluster	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000302558	-1	known	p.D649	0.999	617	0%	773	21.3%	4	0%	-	-	-	NULL
IL1B	3553	genome.wustl.edu	37	2	113588108	113588108	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000576.2	-1	reviewed	p.R214*	0.935	211	0%	163	35%	5	0%	-	-	-	HMMPfam_IL1,HMMSmart_IL1,superfamily_Cytok_IL1_like
DPP10	57628	genome.wustl.edu	37	2	116534835	116534835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020868.3	+1	validated	p.V425L	1.000	102	0%	107	35.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
INSIG2	51141	genome.wustl.edu	37	2	118864344	118864344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016133.2	+1	reviewed	p.S134F	1.000	181	0%	175	30.9%	120	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_INSIG
STEAP3	55240	genome.wustl.edu	37	2	120005349	120005349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182915.2	+1	validated	p.A206V	0.009	24	0%	33	21.2%	5	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
TMEM37	140738	genome.wustl.edu	37	2	120194610	120194610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183240.2	+1	validated	p.R56H	0.001	83	0%	107	15.9%	14	0%	benign(0.01)	tolerated(0.51)	neutral(0.009)	NULL
ENSG00000163075	0	genome.wustl.edu	37	2	120385296	120385296	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000443972	+1	known	p.C87Y	0.005	245	0%	257	39.3%	8	0%	-	-	-	NULL
GLI2	2736	genome.wustl.edu	37	2	121684939	121684939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005270.4	+1	reviewed	p.P51S	1.000	234	0%	271	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLASP1	23332	genome.wustl.edu	37	2	122204923	122204923	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000452274	-1	known	p.T415M	0.674	24	0%	34	41.2%	18	5.5%	-	-	-	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	124783244	124783244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130773.2	+1	reviewed	p.R6Q	0.102	91	0%	88	23.9%	0	-	possibly_damaging(0.863)	tolerated(0.24)	neutral(0.371)	NULL
BIN1	274	genome.wustl.edu	37	2	127821523	127821523	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139343.1	-1	reviewed	p.P228	0.001	26	0%	18	44.4%	51	1.9%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
IWS1	55677	genome.wustl.edu	37	2	128249616	128249616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017969.2	-1	validated	p.A660T	1.000	112	0%	102	18.6%	95	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	HMMPfam_IWS1_C
WDR33	55339	genome.wustl.edu	37	2	128477181	128477181	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018383.3	-1	reviewed	p.P806	0.047	27	0%	36	36.1%	25	0%	-	-	-	NULL
POTEF	728378	genome.wustl.edu	37	2	130832398	130832398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099771.2	-1	validated	p.R883W	1.000	67	0%	77	51.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMPD4	55627	genome.wustl.edu	37	2	130930007	130930007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017951.3	-1	validated	p.L231M	1.000	12	0%	25	40%	60	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
TUBA3E	112714	genome.wustl.edu	37	2	130951378	130951378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207312.2	-1	validated	p.W346L	1.000	35	0%	80	30%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
IMP4	92856	genome.wustl.edu	37	2	131103985	131103985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033416.1	+1	provisional	p.R274C	1.000	6	0.000	10	0.400	100	1%	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	NULL
PTPN18	26469	genome.wustl.edu	37	2	131128789	131128789	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014369.3	+1	reviewed	p.Y314	0.000	39	0%	55	25.5%	25	0%	-	-	-	NULL
FAM123C	205147	genome.wustl.edu	37	2	131520872	131520872	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105193.1	+1	validated	p.A409	0.000	14	0%	14	28.6%	0	-	-	-	-	HMMPfam_WTX
POTEE	445582	genome.wustl.edu	37	2	131976471	131976471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083538.1	+1	validated	p.V166M	0.000	80	0%	134	17.2%	0	-	possibly_damaging(0.819)	tolerated(1)	neutral(0.309)	HMMPfam_Ank,superfamily_Ankyrin repeat
TUBA3D	113457	genome.wustl.edu	37	2	132237904	132237904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080386.2	+1	validated	p.C213Y	1.000	69	0%	168	28%	0	-	possibly_damaging(0.639)	deleterious(0)	deleterious(0.668)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
ZNF806	646915	genome.wustl.edu	37	2	133075993	133075993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001724242.2	+1	model	p.A485V	0.368	128	0.8%	191	18.3%	0	-	-	-	-	NULL
GPR39	2863	genome.wustl.edu	37	2	133175175	133175175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001508.2	+1	validated	p.R187Q	0.000	41	0%	54	13%	7	0%	benign(0.006)	tolerated(0.48)	neutral(0.011)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TMEM163	81615	genome.wustl.edu	37	2	135308187	135308187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030923.4	-1	validated	p.R138C	1.000	84	0%	83	14.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM163	81615	genome.wustl.edu	37	2	135309639	135309639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030923.4	-1	validated	p.A116T	1.000	98	0%	111	25.2%	4	0%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
ACMSD	130013	genome.wustl.edu	37	2	135625231	135625231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138326.2	+1	validated	p.P190H	1.000	172	0%	150	10%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
ACMSD	130013	genome.wustl.edu	37	2	135630089	135630089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138326.2	+1	validated	p.R243C	1.000	75	0%	71	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
CCNT2	905	genome.wustl.edu	37	2	135694491	135694491	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_058241.1	+1	reviewed	p.A107	1.000	87	1.1%	97	28.9%	14	0%	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
ZRANB3	84083	genome.wustl.edu	37	2	135920113	135920113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000283060	-1	known	p.A572T	0.000	68	0%	91	45.1%	0	-	unknown(0)	-	-	NULL
DARS	1615	genome.wustl.edu	37	2	136670055	136670055	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001349.2	-1	validated	e13+1	1.000	147	0%	142	19.7%	1	0%	-	-	-	-
LRP1B	53353	genome.wustl.edu	37	2	141200103	141200103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018557.2	-1	validated	p.C3462R	1.000	106	0%	183	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141771157	141771157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018557.2	-1	validated	p.G783E	1.000	196	0%	236	28.8%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141771271	141771271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018557.2	-1	validated	p.S745L	1.000	191	0%	221	39.4%	0	-	possibly_damaging(0.527)	deleterious(0.02)	deleterious(0.561)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141819742	141819742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018557.2	-1	validated	p.P372S	1.000	254	0%	290	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
GTDC1	79712	genome.wustl.edu	37	2	144903216	144903216	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006636.3	-1	validated	p.H90	0.990	190	0%	254	33.5%	19	0%	-	-	-	NULL
ZEB2	9839	genome.wustl.edu	37	2	145182383	145182383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014795.3	-1	reviewed	p.T128I	1.000	153	0%	152	27.6%	1	0%	possibly_damaging(0.856)	deleterious(0.03)	deleterious(0.695)	NULL
ACVR2A	92	genome.wustl.edu	37	2	148680606	148680606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001616.3	+1	reviewed	p.A381V	1.000	279	0.4%	258	27.5%	8	0%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MBD5	55777	genome.wustl.edu	37	2	149221348	149221348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018328.4	+1	reviewed	p.T86I	1.000	310	0%	210	12.4%	9	0%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00391
MBD5	55777	genome.wustl.edu	37	2	149227770	149227770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018328.4	+1	reviewed	p.P753H	1.000	125	0%	109	33%	12	0%	unknown(0)	tolerated(0.12)	-	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152220529	152220529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007115.2	+1	reviewed	p.A56V	0.999	72	0%	73	32.9%	1	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
NEB	4703	genome.wustl.edu	37	2	152350678	152350678	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000434685	-1	known	p.A495V	1.000	21	0%	32	28.1%	1	0%	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152417810	152417810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004543.4	-1	reviewed	p.A4637V	1.000	41	0%	63	15.9%	1	0%	probably_damaging(0.957)	tolerated(0.08)	deleterious(0.701)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152466590	152466590	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004543.4	-1	reviewed	p.I3778	0.965	89	0%	107	12.1%	0	-	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152553746	152553746	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004543.4	-1	reviewed	p.Y462	0.998	179	0%	264	29.5%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
PRPF40A	55660	genome.wustl.edu	37	2	153527816	153527816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017892.3	-1	validated	p.V484I	1.000	174	0%	228	24.1%	89	0%	possibly_damaging(0.444)	tolerated(0.08)	neutral(0.445)	HMMSmart_SM00441,superfamily_FF domain
GALNT13	114805	genome.wustl.edu	37	2	155102355	155102355	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052917.2	+1	validated	p.V239	0.997	116	0%	119	33.6%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
NR4A2	4929	genome.wustl.edu	37	2	157186647	157186647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006186.3	-1	reviewed	p.A18T	1.000	35	0%	56	28.6%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
GALNT5	11227	genome.wustl.edu	37	2	158116001	158116001	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014568.1	+1	provisional	p.S469	0.905	234	0.4%	283	39.9%	1	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
ACVR1C	130399	genome.wustl.edu	37	2	158399284	158399284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145259.2	-1	validated	p.A345V	1.000	262	0%	265	33.2%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DAPL1	92196	genome.wustl.edu	37	2	159718965	159718965	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000343761	+1	known	p.H90	0.342	88	0%	94	30.9%	0	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	superfamily_Family A G protein-coupled receptor-like
LY75	4065	genome.wustl.edu	37	2	160755493	160755493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002349.2	-1	validated	p.D58N	0.207	80	0%	117	30.8%	3	0%	probably_damaging(1)	tolerated(0.39)	deleterious(0.516)	HMMSmart_SM00458,superfamily_Ricin B-like lectins
DPP4	1803	genome.wustl.edu	37	2	162877189	162877189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001935.3	-1	reviewed	p.S360P	0.401	133	0%	129	10.1%	9	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
FAP	2191	genome.wustl.edu	37	2	163051222	163051222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004460.2	-1	reviewed	p.R480H	0.001	64	0%	48	31.2%	9	0%	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_SSF82171
FAP	2191	genome.wustl.edu	37	2	163081009	163081009	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004460.2	-1	reviewed	p.R109	0.288	90	0%	88	31.8%	3	0%	-	-	-	HMMPfam_DPPIV_N,superfamily_SSF82171
IFIH1	64135	genome.wustl.edu	37	2	163130343	163130343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022168.2	-1	reviewed	p.R806C	1.000	129	0%	187	17.1%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNH7	90134	genome.wustl.edu	37	2	163292018	163292018	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033272.2	-1	reviewed	p.G548	0.215	85	0%	112	15.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH7	90134	genome.wustl.edu	37	2	163302901	163302901	+	Missense_Mutation	SNP	C	C	T	rs78247304		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033272.2	-1	reviewed	p.R394H	1.000	77	0%	71	45.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GRB14	2888	genome.wustl.edu	37	2	165404271	165404271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004490.2	-1	reviewed	p.D127G	1.000	150	0%	144	36.1%	1	0%	probably_damaging(0.997)	tolerated(0.55)	deleterious(0.473)	HMMPfam_RA,HMMSmart_RA
COBLL1	22837	genome.wustl.edu	37	2	165578781	165578781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014900.3	-1	validated	p.R267H	0.909	124	0%	123	35.8%	24	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cobl
CSRNP3	80034	genome.wustl.edu	37	2	166532998	166532998	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024969.3	+1	validated	p.D195	0.261	348	0%	317	32.5%	0	-	-	-	-	NULL
GALNT3	2591	genome.wustl.edu	37	2	166611442	166611442	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004482.3	-1	reviewed	p.Y508	1.000	107	0%	106	30.2%	33	0%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
SCN9A	6335	genome.wustl.edu	37	2	167055607	167055607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002977.3	-1	reviewed	p.R1837C	1.000	316	0.3%	348	17.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167056258	167056258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002977.3	-1	reviewed	p.R1620C	1.000	291	0%	304	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168105449	168105449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152381.4	+1	validated	p.A2516V	0.074	480	0%	535	27.5%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
ABCB11	8647	genome.wustl.edu	37	2	169824976	169824976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003742.2	-1	reviewed	p.A679V	0.799	48	0%	40	12.5%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
ABCB11	8647	genome.wustl.edu	37	2	169826030	169826030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003742.2	-1	reviewed	p.A614V	0.999	39	0%	74	24.3%	0	-	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRP2	4036	genome.wustl.edu	37	2	170026258	170026258	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004525.2	-1	reviewed	p.C3817	1.000	144	0.7%	175	27.4%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170053432	170053432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004525.2	-1	reviewed	p.P2896L	1.000	92	0%	91	19.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1
FASTKD1	79675	genome.wustl.edu	37	2	170416957	170416957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024622.3	-1	validated	p.A304V	0.367	197	0%	297	24.9%	9	0%	possibly_damaging(0.909)	tolerated(0.05)	deleterious(0.708)	NULL
PPIG	9360	genome.wustl.edu	37	2	170465253	170465253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004792.2	+1	validated	p.G121D	1.000	111	0%	121	31.4%	48	0%	benign(0.011)	tolerated(0.35)	neutral(0.021)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
PPIG	9360	genome.wustl.edu	37	2	170487478	170487478	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004792.2	+1	validated	p.R248*	1.000	198	0%	226	27.9%	51	0%	-	-	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170531514	170531514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085447.1	-1	validated	p.R111C	1.000	43	0%	44	27.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBR3	130507	genome.wustl.edu	37	2	170806482	170806482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172070.3	+1	validated	p.R1151H	1.000	221	0%	217	32.3%	9	0%	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
UBR3	130507	genome.wustl.edu	37	2	170917697	170917697	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172070.3	+1	validated	e34+1	1.000	163	0%	195	30.3%	0	-	-	-	-	-
UBR3	130507	genome.wustl.edu	37	2	170936439	170936439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172070.3	+1	validated	p.V1772A	1.000	115	0%	150	25.3%	10	0%	possibly_damaging(0.803)	deleterious(0.01)	deleterious(0.708)	NULL
MYO3B	140469	genome.wustl.edu	37	2	171323070	171323070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138995.3	+1	validated	p.R955C	1.000	228	0%	229	35.4%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLK1	9874	genome.wustl.edu	37	2	171854254	171854254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012290.4	-1	validated	p.V662F	1.000	700	0%	706	12.6%	57	0%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DCAF17	80067	genome.wustl.edu	37	2	172305290	172305290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025000.3	+1	reviewed	p.L141F	1.000	94	0%	170	28.2%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGA6	3655	genome.wustl.edu	37	2	173351792	173351792	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001079818.1	+1	reviewed	p.C632	1.000	109	0%	116	11.2%	73	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
SP3	6670	genome.wustl.edu	37	2	174819881	174819881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003111.4	-1	reviewed	p.Q453H	1.000	57	0%	107	11.2%	60	0%	probably_damaging(0.977)	deleterious(0.05)	deleterious(0.764)	NULL
WIPF1	7456	genome.wustl.edu	37	2	175436888	175436888	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077269.1	-1	reviewed	p.P215	0.992	93	0%	81	32.1%	7	0%	-	-	-	NULL
LOC100130325	100130325	genome.wustl.edu	37	2	175440005	175440005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001716429.2	+1	model	p.A122T	0.935	348	0%	340	25.9%	9	0%	-	-	-	NULL
CHN1	1123	genome.wustl.edu	37	2	175666470	175666470	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001822.4	-1	reviewed	p.C391	1.000	100	0%	130	30%	18	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
CHN1	1123	genome.wustl.edu	37	2	175677107	175677107	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001822.4	-1	reviewed	p.T272	0.077	293	0%	262	34.4%	12	0%	-	-	-	NULL
MIR10B	406903	genome.wustl.edu	37	2	177015077	177015077	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000385011	+1	known	NULL	1.000	9	0.000	26	0.269	0	-	-	-	-	-
HOXD1	3231	genome.wustl.edu	37	2	177054035	177054035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024501.1	+1	reviewed	p.A169V	0.970	14	0%	12	50%	0	-	benign(0.104)	tolerated(0.09)	neutral(0.304)	NULL
MTX2	10651	genome.wustl.edu	37	2	177135013	177135013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000420864	+1	known	p.P37L	0.014	12	0%	23	39.1%	0	-	unknown(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179397297	179397297	+	Missense_Mutation	SNP	C	C	T	rs190398670	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.R32112H	0.999	253	0%	176	12.5%	0	-	probably_damaging(0.995)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179399200	179399200	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133378.4	-1	reviewed	p.W31479*	1.000	202	0%	200	33.5%	0	-	probably_damaging(0.994)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179414905	179414905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.P27984S	1.000	218	0%	205	27.8%	1	0%	probably_damaging(1)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179430273	179430273	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133378.4	-1	reviewed	p.A24294V	0.998	238	0%	230	36.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179431170	179431170	+	Silent	SNP	G	G	A	rs10185798	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133378.4	-1	reviewed	p.S23995F	0.198	172	0%	235	27.7%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179431430	179431430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.V23907I	0.959	170	0%	197	36%	0	-	benign(0.138)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179437666	179437666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.R21828H	0.998	40	0%	58	25.9%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179440976	179440976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.A20725T	0.948	55	0%	60	25%	3	0%	possibly_damaging(0.892)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179442738	179442738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.P20265H	1.000	70	0%	102	15.7%	1	0%	probably_damaging(0.999)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179444946	179444946	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133378.4	-1	reviewed	p.G19788D	0.999	96	0%	155	11%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179452805	179452805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.A18540V	0.001	78	0%	68	42.6%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179463508	179463508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.P16407S	1.000	276	0%	323	35.9%	0	-	benign(0.014)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179473628	179473628	+	Silent	SNP	C	C	T	rs139789997	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.P14802	0.981	231	0%	242	28.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179550287	179550287	+	Silent	SNP	G	G	A	rs72650029	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.L9540	0.270	50	0%	74	25.7%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179574365	179574365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000356127	-1	known	p.A8317T	0.996	120	0%	165	46.1%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179606288	179606288	+	Missense_Mutation	SNP	G	G	A	rs148164929	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000342175	-1	known	p.T3720I	0.994	232	0%	260	36.5%	0	-	possibly_damaging(0.539)	-	-	HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179638696	179638696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133379.3	-1	reviewed	p.R2400K	1.000	175	0%	198	32.8%	0	-	benign(0.099)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179650418	179650418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133379.3	-1	reviewed	p.R808C	1.000	103	0%	98	28.6%	0	-	possibly_damaging(0.737)	-	-	NULL
SSFA2	6744	genome.wustl.edu	37	2	182781107	182781107	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130445.1	+1	validated	p.R914*	1.000	176	0.6%	274	33.9%	69	0%	-	-	-	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185803012	185803012	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194250.1	+1	provisional	p.Q963	0.000	407	0%	501	10.8%	0	-	-	-	-	NULL
ITGAV	3685	genome.wustl.edu	37	2	187506157	187506157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002210.3	+1	reviewed	p.G334D	0.999	309	0%	350	32.9%	32	0%	possibly_damaging(0.617)	tolerated(0.58)	neutral(0.220)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
COL3A1	1281	genome.wustl.edu	37	2	189873865	189873865	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000090.3	+1	reviewed	p.S1247	1.000	126	0%	132	33.3%	335	0%	-	-	-	HMMSmart_SM00038
COL5A2	1290	genome.wustl.edu	37	2	189918904	189918904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000393.3	-1	reviewed	p.A809V	1.000	131	0%	104	23.1%	17	0%	possibly_damaging(0.776)	-	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189927991	189927991	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000393.3	-1	reviewed	p.A592	1.000	148	0%	124	13.7%	7	0%	-	-	-	HMMPfam_Collagen
WDR75	84128	genome.wustl.edu	37	2	190331172	190331172	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032168.1	+1	provisional	p.I437	0.068	300	0%	309	34%	26	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SLC40A1	30061	genome.wustl.edu	37	2	190426889	190426889	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014585.5	-1	reviewed	p.T477	1.000	83	0%	87	31%	72	0%	-	-	-	superfamily_MFS general substrate transporter
ASNSD1	54529	genome.wustl.edu	37	2	190532551	190532551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019048.2	+1	validated	p.R509H	0.998	120	0%	201	20.9%	96	0%	possibly_damaging(0.693)	tolerated(0.17)	neutral(0.307)	HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
GLS	2744	genome.wustl.edu	37	2	191760356	191760356	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014905.3	+1	validated	p.T170	0.883	79	0%	162	43.8%	8	0%	-	-	-	NULL
GLS	2744	genome.wustl.edu	37	2	191785930	191785930	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014905.3	+1	validated	e9+1	1.000	142	0%	169	30.8%	0	-	-	-	-	-
SDPR	8436	genome.wustl.edu	37	2	192711323	192711323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004657.5	-1	reviewed	p.T110M	1.000	57	0%	52	36.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196642674	196642674	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018897.2	-1	validated	p.G3638	0.019	124	0%	158	36.7%	2	0%	-	-	-	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196681639	196681639	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018897.2	-1	validated	p.S3158	0.962	130	0%	161	37.9%	2	0%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196729416	196729416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018897.2	-1	validated	p.E2321D	0.972	228	0%	228	42.5%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196749409	196749409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018897.2	-1	validated	p.T1888M	0.000	226	0%	225	35.6%	1	0%	benign(0.123)	tolerated(0.12)	neutral(0.271)	NULL
HECW2	57520	genome.wustl.edu	37	2	197066092	197066092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020760.1	-1	provisional	p.R1543H	1.000	126	0%	165	15.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197183832	197183832	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020760.1	-1	provisional	p.A594	0.001	58	0%	63	30.2%	2	0%	-	-	-	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197657734	197657734	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012086.2	-1	provisional	p.G119	0.983	126	0%	184	23.4%	26	0%	-	-	-	NULL
ANKRD44	91526	genome.wustl.edu	37	2	197975558	197975558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153697.1	-1	provisional	p.G281D	1.000	158	0%	229	32.8%	3	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PLCL1	5334	genome.wustl.edu	37	2	198948614	198948614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006226.3	+1	validated	p.R27W	0.958	170	0%	148	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PLCL1	5334	genome.wustl.edu	37	2	198949564	198949564	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006226.3	+1	validated	p.S343	0.997	198	0%	184	26.6%	0	-	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl
SATB2	23314	genome.wustl.edu	37	2	200136978	200136978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015265.3	-1	reviewed	p.A720T	0.001	200	0%	263	25.1%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
KCTD18	130535	genome.wustl.edu	37	2	201369584	201369584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152387.2	-1	validated	p.A87T	0.998	89	0%	139	30.9%	21	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_K_tetra,superfamily_POZ domain
CLK1	1195	genome.wustl.edu	37	2	201718695	201718695	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004071.3	-1	reviewed	p.H414	0.803	342	0%	326	23.6%	75	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ALS2CR11	151254	genome.wustl.edu	37	2	202483717	202483717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152525.5	-1	validated	p.S46L	0.000	85	0%	114	43.9%	0	-	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	NULL
FZD7	8324	genome.wustl.edu	37	2	202900144	202900144	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003507.1	+1	reviewed	p.G258	1.000	43	0%	42	26.2%	6	0%	-	-	-	HMMPfam_Frizzled
WDR12	55759	genome.wustl.edu	37	2	203748385	203748385	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018256.3	-1	reviewed	p.Q356	0.996	46	0%	72	29.2%	65	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NRP2	8828	genome.wustl.edu	37	2	206562359	206562359	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201266.1	+1	reviewed	p.C55	0.967	1074	0%	1369	34.3%	10	0%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
INO80D	54891	genome.wustl.edu	37	2	206921026	206921026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017759.4	-1	validated	p.A287V	1.000	79	0%	55	29.1%	0	-	possibly_damaging(0.83)	tolerated(0.07)	deleterious(0.635)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175046	207175046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020923.1	+1	validated	p.R1932C	0.008	169	0%	220	29.1%	0	-	possibly_damaging(0.633)	deleterious(0.01)	deleterious(0.627)	NULL
DYTN	391475	genome.wustl.edu	37	2	207570532	207570532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001093730.1	-1	provisional	p.S121I	1.000	53	0%	50	28%	0	-	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	superfamily_SSF47473
DYTN	391475	genome.wustl.edu	37	2	207575319	207575319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001093730.1	-1	provisional	p.A8V	1.000	64	0%	42	19%	0	-	possibly_damaging(0.895)	deleterious(0.02)	deleterious(0.736)	NULL
FZD5	7855	genome.wustl.edu	37	2	208632174	208632174	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003468.3	-1	reviewed	p.R430	0.054	13	0%	16	31.2%	13	0%	-	-	-	HMMPfam_Frizzled
CRYGC	1420	genome.wustl.edu	37	2	208994275	208994275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020989.3	-1	reviewed	p.R48C	0.990	228	0%	251	31.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
PIKFYVE	200576	genome.wustl.edu	37	2	209163490	209163490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015040.3	+1	reviewed	p.R346H	1.000	140	0%	145	34.5%	4	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209315516	209315516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005048.2	+1	reviewed	p.A299V	0.996	197	0%	138	23.2%	0	-	benign(0.308)	tolerated(0.53)	neutral(0.104)	HMMPfam_7tm_2,superfamily_SSF81321
MAP2	4133	genome.wustl.edu	37	2	210558726	210558726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002374.3	+1	reviewed	p.P611H	0.154	137	0%	161	31.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MAP2_projctn
ERBB4	2066	genome.wustl.edu	37	2	212570071	212570071	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000260943	-1	known	p.T390M	1.000	331	0%	323	17%	0	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_L domain-like
IKZF2	22807	genome.wustl.edu	37	2	213886806	213886806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016260.2	-1	reviewed	p.R208H	1.000	180	0%	208	32.7%	2	0%	possibly_damaging(0.926)	tolerated(0.05)	deleterious(0.720)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IKZF2	22807	genome.wustl.edu	37	2	213921699	213921699	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016260.2	-1	reviewed	p.S88	1.000	154	0%	112	9.8%	2	0%	-	-	-	NULL
SPAG16	79582	genome.wustl.edu	37	2	215274982	215274982	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024532.3	+1	validated	p.H613	0.001	155	0%	174	25.9%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BARD1	580	genome.wustl.edu	37	2	215634034	215634034	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000465.2	-1	reviewed	p.G439	0.012	102	0%	187	17.1%	19	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ABCA12	26154	genome.wustl.edu	37	2	215840654	215840654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173076.2	-1	reviewed	p.G1746C	1.000	216	0%	209	30.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215876372	215876372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173076.2	-1	reviewed	p.A708V	0.908	172	0%	190	29.5%	1	0%	benign(0.004)	tolerated(0.67)	neutral(0.003)	NULL
FN1	2335	genome.wustl.edu	37	2	216269253	216269253	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_212482.1	-1	reviewed	p.Q1038*	1.000	173	0%	167	24.6%	30	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MARCH4	57574	genome.wustl.edu	37	2	217234902	217234902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020814.2	-1	validated	p.A28T	0.986	5	0.000	6	0.833	0	-	possibly_damaging(0.507)	tolerated(0.1)	neutral(0.456)	NULL
TNP1	7141	genome.wustl.edu	37	2	217724658	217724658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003284.3	-1	validated	p.R34C	0.998	173	0%	216	27.3%	0	-	probably_damaging(0.991)	-	-	HMMPfam_TP1,PatternScan_TP1
TNS1	7145	genome.wustl.edu	37	2	218672810	218672810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022648.4	-1	reviewed	p.G1684D	1.000	29	0%	19	42.1%	17	0%	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729
PLCD4	84812	genome.wustl.edu	37	2	219480467	219480467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032726.2	+1	provisional	p.A2V	0.642	24	0%	38	39.5%	0	-	unknown(0)	deleterious(0)	-	NULL
PLCD4	84812	genome.wustl.edu	37	2	219500622	219500622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032726.2	+1	provisional	p.A667V	0.999	52	0%	93	21.5%	2	0%	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ZNF142	7701	genome.wustl.edu	37	2	219505490	219505490	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105537.1	-1	validated	p.Y1497	1.000	29	0%	28	14.3%	27	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BCS1L	617	genome.wustl.edu	37	2	219525887	219525887	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001079866.1	+1	reviewed	p.S59	1.000	99	0%	106	31.1%	25	0%	-	-	-	HMMPfam_BCS1_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
CYP27A1	1593	genome.wustl.edu	37	2	219677349	219677349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000784.3	+1	reviewed	p.V241I	0.994	300	0%	384	16.7%	37	0%	benign(0)	tolerated(1)	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP27A1	1593	genome.wustl.edu	37	2	219677436	219677436	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000784.3	+1	reviewed	p.R270*	0.425	294	0%	395	29.9%	28	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP27A1	1593	genome.wustl.edu	37	2	219677693	219677693	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000784.3	+1	reviewed	p.L297	0.155	37	0%	61	37.7%	33	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CCDC108	255101	genome.wustl.edu	37	2	219868980	219868980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194302.2	-1	provisional	p.R1750I	0.000	47	0%	73	30.1%	0	-	benign(0.305)	tolerated(0.17)	neutral(0.154)	NULL
ABCB6	10058	genome.wustl.edu	37	2	220077177	220077177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005689.1	-1	reviewed	p.R634C	1.000	39	0%	68	32.4%	80	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
STK16	8576	genome.wustl.edu	37	2	220115038	220115038	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_026909.1	+1	validated	NULL	1.000	250	0%	294	14.6%	57	0%	-	-	-	-
SPEG	10290	genome.wustl.edu	37	2	220350188	220350188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005876.4	+1	validated	p.R2577H	0.998	27	0%	26	19.2%	0	-	possibly_damaging(0.73)	tolerated(0.14)	deleterious(0.516)	superfamily_Immunoglobulin
OBSL1	23363	genome.wustl.edu	37	2	220428341	220428341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015311.2	-1	reviewed	p.V806M	0.999	48	0%	74	36.5%	211	0%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	superfamily_SSF48726
EPHA4	2043	genome.wustl.edu	37	2	222428469	222428469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004438.3	-1	reviewed	p.R269W	1.000	141	0%	178	34.3%	0	-	possibly_damaging(0.76)	deleterious(0.02)	deleterious(0.664)	NULL
PAX3	5077	genome.wustl.edu	37	2	223096930	223096930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181459.2	-1	reviewed	p.R220H	1.000	181	0%	167	28.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CCDC140	151278	genome.wustl.edu	37	2	223168954	223168954	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153038.1	+1	validated	p.S111	0.000	30	0%	64	14.1%	0	-	-	-	-	NULL
AP1S3	130340	genome.wustl.edu	37	2	224642547	224642547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039569.1	-1	validated	p.R15W	1.000	147	0.7%	125	32%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
NYAP2	57624	genome.wustl.edu	37	2	226378143	226378143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020864.1	+1	validated	p.R93H	1.000	119	0%	110	13.6%	1	0%	probably_damaging(0.999)	tolerated(0.38)	deleterious(0.508)	NULL
IRS1	3667	genome.wustl.edu	37	2	227661732	227661732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005544.2	-1	reviewed	p.A575T	0.994	9	0.000	15	0.267	16	0%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	NULL
COL4A4	1286	genome.wustl.edu	37	2	227876933	227876933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000092.4	-1	reviewed	p.G1433C	1.000	105	0%	107	34.6%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL4A4	1286	genome.wustl.edu	37	2	227919381	227919381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000092.4	-1	reviewed	p.G930D	0.999	126	0%	100	35%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228172539	228172539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000091.3	+1	reviewed	p.A1456T	0.684	145	0%	210	29.5%	0	-	unknown(0)	tolerated(0.26)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
C2orf83	56918	genome.wustl.edu	37	2	228476341	228476341	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020161.3	-1	validated	p.W74*	0.000	112	0%	124	12.1%	0	-	-	-	-	NULL
WDR69	164781	genome.wustl.edu	37	2	228754647	228754647	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178821.1	+1	provisional	p.V63	0.744	99	0%	118	17.8%	0	-	-	-	-	superfamily_WD40 repeat-like
WDR69	164781	genome.wustl.edu	37	2	228758594	228758594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178821.1	+1	provisional	p.R134M	0.998	54	0%	66	10.6%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DNER	92737	genome.wustl.edu	37	2	230231637	230231637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139072.3	-1	validated	p.S685N	1.000	58	0%	89	10.1%	0	-	possibly_damaging(0.521)	deleterious(0)	deleterious(0.620)	NULL
SP110	3431	genome.wustl.edu	37	2	231079760	231079760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080424.2	-1	reviewed	p.R74M	0.025	179	0%	160	27.5%	11	0%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_Sp100
SP100	6672	genome.wustl.edu	37	2	231380345	231380345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003113.3	+1	validated	p.D877G	1.000	91	0%	102	35.3%	2	0%	unknown(0)	deleterious(0.01)	-	NULL
HTR2B	3357	genome.wustl.edu	37	2	231973904	231973904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000867.4	-1	validated	p.R258H	0.997	292	0%	329	11.9%	11	0%	possibly_damaging(0.868)	deleterious(0.04)	deleterious(0.686)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARMC9	80210	genome.wustl.edu	37	2	232104723	232104723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025139.3	+1	validated	p.A283V	0.992	55	0%	63	33.3%	24	0%	probably_damaging(0.995)	tolerated(0.27)	deleterious(0.491)	superfamily_ARM-type_fold
B3GNT7	93010	genome.wustl.edu	37	2	232263147	232263147	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145236.2	+1	validated	p.G239	0.979	29	0%	28	32.1%	3	0%	-	-	-	HMMPfam_Galactosyl_T
COPS7B	64708	genome.wustl.edu	37	2	232659000	232659000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022730.1	+1	provisional	p.S89N	1.000	50	0%	123	28.5%	62	0%	benign(0.016)	tolerated(0.24)	neutral(0.038)	HMMPfam_PCI,HMMSmart_SM00088
ECEL1	9427	genome.wustl.edu	37	2	233349208	233349208	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004826.2	-1	validated	p.S386	0.995	29	0%	24	41.7%	4	0%	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
GIGYF2	26058	genome.wustl.edu	37	2	233708955	233708955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001103147.1	+1	reviewed	p.R1051H	0.999	39	0%	50	36%	35	0%	unknown(0)	tolerated(0.18)	-	NULL
INPP5D	3635	genome.wustl.edu	37	2	234102497	234102497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000359570	+1	known	p.T829M	0.239	123	0%	156	23.1%	1	0%	possibly_damaging(0.732)	deleterious(0.03)	deleterious(0.632)	NULL
ATG16L1	55054	genome.wustl.edu	37	2	234198558	234198558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030803.6	+1	validated	p.A421V	0.996	117	0%	124	35.5%	16	0%	unknown(0)	tolerated(0.18)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SAG	6295	genome.wustl.edu	37	2	234237161	234237161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000541.4	+1	reviewed	p.A184T	0.993	164	0%	178	14.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Arrestin_N,superfamily_Ig_E-set
SAG	6295	genome.wustl.edu	37	2	234243689	234243689	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000541.4	+1	reviewed	p.G296	0.561	69	0%	72	34.7%	0	-	-	-	-	HMMPfam_Arrestin_C,superfamily_Ig_E-set
UGT1A5	54579	genome.wustl.edu	37	2	234621783	234621783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019078.1	+1	reviewed	p.R49Q	0.000	40	0%	120	31.7%	0	-	benign(0.045)	tolerated(0.22)	neutral(0.045)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A5	54579	genome.wustl.edu	37	2	234622380	234622380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019078.1	+1	reviewed	p.L248R	0.028	239	0%	465	28%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
HJURP	55355	genome.wustl.edu	37	2	234749699	234749699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018410.3	-1	validated	p.R576H	0.000	156	0%	128	13.3%	72	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
HJURP	55355	genome.wustl.edu	37	2	234749872	234749872	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018410.3	-1	validated	p.S518	0.000	136	0%	118	24.6%	68	0%	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234858594	234858594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024080.4	+1	validated	p.A315D	1.000	46	0%	41	29.3%	0	-	possibly_damaging(0.882)	tolerated(0.23)	neutral(0.386)	NULL
TRPM8	79054	genome.wustl.edu	37	2	234869644	234869644	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024080.4	+1	validated	p.A529	0.014	65	0%	95	35.8%	0	-	-	-	-	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235950763	235950763	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014521.2	+1	reviewed	p.Y450	1.000	64	0%	42	14.3%	63	0%	-	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	236957886	236957886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037131.1	+1	validated	p.S692T	0.975	121	0%	123	36.6%	25	0%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
IQCA1	79781	genome.wustl.edu	37	2	237240051	237240051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024726.3	-1	provisional	p.A775V	0.000	204	0%	236	28.4%	13	0%	benign(0.012)	tolerated(1)	neutral(0.001)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IQCA1	79781	genome.wustl.edu	37	2	237253212	237253212	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024726.3	-1	provisional	p.N648	0.000	30	0%	29	27.6%	23	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
COL6A3	1293	genome.wustl.edu	37	2	238249370	238249370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004369.3	-1	reviewed	p.A2730V	0.997	114	0%	78	26.9%	44	0%	probably_damaging(1)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
LRRFIP1	9208	genome.wustl.edu	37	2	238672632	238672632	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001137552.1	+1	validated	p.T759S	0.000	107	0%	106	26.4%	82	0%	benign(0.031)	tolerated(0.33)	neutral(0.026)	NULL
RBM44	375316	genome.wustl.edu	37	2	238726811	238726811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080504.2	+1	validated	p.A418T	0.000	74	0%	124	28.2%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
TRAF3IP1	26146	genome.wustl.edu	37	2	239233989	239233989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015650.3	+1	validated	p.A56T	0.030	31	0%	61	14.8%	15	0%	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_MIP-T3
TRAF3IP1	26146	genome.wustl.edu	37	2	239234449	239234449	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015650.3	+1	validated	e3-1	1.000	33	0%	92	32.6%	0	-	-	-	-	-
HDAC4	9759	genome.wustl.edu	37	2	240048158	240048158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006037.3	-1	reviewed	p.M504I	0.275	10	0%	10	40%	6	0%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
HDAC4	9759	genome.wustl.edu	37	2	240078424	240078424	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006037.3	-1	reviewed	p.S219	0.932	94	0%	52	30.8%	11	0%	-	-	-	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241465828	241465828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016552.2	-1	validated	p.A241T	0.256	21	0%	26	34.6%	0	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	superfamily_Ankyrin repeat
PASK	23178	genome.wustl.edu	37	2	242065855	242065855	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015148.2	-1	validated	p.P825	0.000	86	0%	97	33%	23	0%	-	-	-	NULL
ANO7	50636	genome.wustl.edu	37	2	242155536	242155536	+	Missense_Mutation	SNP	C	C	T	rs189777701	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001891.3	+1	validated	p.R673W	0.495	12	0%	13	53.8%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_DUF590
FARP2	9855	genome.wustl.edu	37	2	242343285	242343285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014808.2	+1	validated	p.R76C	0.060	109	0%	113	15%	18	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
FARP2	9855	genome.wustl.edu	37	2	242432819	242432819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014808.2	+1	validated	p.V1003I	0.996	28	0%	27	29.6%	17	0%	benign(0.043)	deleterious(0.04)	neutral(0.351)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
D2HGDH	728294	genome.wustl.edu	37	2	242681923	242681923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152783.3	+1	reviewed	p.V142I	0.998	28	0%	41	43.9%	17	0%	probably_damaging(0.964)	tolerated(0.17)	neutral(0.465)	HMMPfam_FAD_binding_4,superfamily_FAD-binding domain
CNTN6	27255	genome.wustl.edu	37	3	1337398	1337398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014461.2	+1	reviewed	p.D190N	1.000	136	0%	124	15.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_IG,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1363376	1363376	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014461.2	+1	reviewed	p.P268	0.144	283	0%	274	31.8%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1414616	1414616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014461.2	+1	reviewed	p.A588V	0.379	163	0%	175	31.4%	0	-	benign(0.02)	tolerated(0.07)	neutral(0.320)	superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726
CNTN4	152330	genome.wustl.edu	37	3	2777912	2777912	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175607.1	+1	reviewed	p.L23	1.000	419	0%	397	32.2%	0	-	-	-	-	superfamily_Immunoglobulin
TRNT1	51095	genome.wustl.edu	37	3	3186365	3186365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182916.2	+1	validated	p.E193D	0.998	144	0%	127	25.2%	14	0%	possibly_damaging(0.783)	deleterious(0.04)	deleterious(0.642)	superfamily_Poly A polymerase C-terminal region-like
TRNT1	51095	genome.wustl.edu	37	3	3189701	3189701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182916.2	+1	validated	p.G390C	1.000	180	0%	158	31%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Poly A polymerase C-terminal region-like
LRRN1	57633	genome.wustl.edu	37	3	3887915	3887915	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020873.5	+1	validated	p.Y530	0.564	254	0%	298	32.9%	104	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ITPR1	3708	genome.wustl.edu	37	3	4703806	4703806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099952.2	+1	reviewed	p.A431V	1.000	146	0%	146	33.6%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)
ITPR1	3708	genome.wustl.edu	37	3	4716844	4716844	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099952.2	+1	reviewed	p.D897	1.000	121	0%	154	24%	1	0%	-	-	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4810230	4810230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099952.2	+1	reviewed	p.R1873W	0.374	57	0%	50	30%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4842203	4842203	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099952.2	+1	reviewed	p.R2294	0.687	125	0%	114	13.2%	2	0%	-	-	-	NULL
BHLHE40	8553	genome.wustl.edu	37	3	5024967	5024967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003670.2	+1	reviewed	p.A277T	0.000	118	0%	123	30.1%	171	0%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
GRM7	2917	genome.wustl.edu	37	3	7620446	7620446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181874.2	+1	reviewed	p.T618M	1.000	115	0%	138	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
RAD18	56852	genome.wustl.edu	37	3	8923054	8923054	+	Missense_Mutation	SNP	C	C	T	rs150411306	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020165.3	-1	reviewed	p.R492H	0.426	215	0.5%	205	38.5%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAD18	56852	genome.wustl.edu	37	3	8955356	8955356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020165.3	-1	reviewed	p.R313H	1.000	63	0%	87	34.5%	11	0%	benign(0.326)	deleterious(0.03)	neutral(0.466)	NULL
BRPF1	7862	genome.wustl.edu	37	3	9780875	9780875	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003694.1	+1	reviewed	p.G264	0.682	41	0%	52	28.8%	21	0%	-	-	-	NULL
BRPF1	7862	genome.wustl.edu	37	3	9784845	9784845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003694.1	+1	reviewed	p.R740H	1.000	77	0%	79	39.2%	23	0%	possibly_damaging(0.621)	deleterious(0.05)	deleterious(0.562)	HMMSmart_BROMO,superfamily_Bromodomain
TADA3	10474	genome.wustl.edu	37	3	9831541	9831541	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006354.2	-1	reviewed	p.K105T	1.000	126	0%	154	40.3%	136	0%	benign(0.056)	tolerated(0.28)	neutral(0.035)	NULL
CRELD1	78987	genome.wustl.edu	37	3	9986082	9986082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077415.2	+1	reviewed	p.D361G	1.000	80	0%	139	22.3%	25	0%	benign(0.141)	deleterious(0.01)	neutral(0.418)	NULL
PRRT3	285368	genome.wustl.edu	37	3	9991568	9991568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207351.3	-1	validated	p.A78T	0.000	28	0%	47	34%	8	0%	benign(0.006)	deleterious(0.05)	neutral(0.345)	NULL
IRAK2	3656	genome.wustl.edu	37	3	10276179	10276179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001570.3	+1	reviewed	p.A437T	0.000	15	0%	26	30.8%	3	0%	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_Kinase_like
SEC13	6396	genome.wustl.edu	37	3	10345850	10345850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183352.1	-1	reviewed	p.R239C	0.998	101	0%	114	29.8%	343	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
HRH1	3269	genome.wustl.edu	37	3	11301342	11301342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000861.3	+1	reviewed	p.L207I	1.000	194	0%	152	15.8%	4	0%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VGLL4	9686	genome.wustl.edu	37	3	11600159	11600159	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128219.1	-1	validated	p.T254	0.988	48	0%	48	10.4%	64	0%	-	-	-	HMMSmart_SM00711
TSEN2	80746	genome.wustl.edu	37	3	12531460	12531460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145392.1	+1	reviewed	p.A54V	0.052	150	0.7%	178	29.8%	9	0%	benign(0.029)	tolerated(0.65)	neutral(0.005)	NULL
TSEN2	80746	genome.wustl.edu	37	3	12545083	12545083	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145392.1	+1	reviewed	p.R211*	0.000	30	0%	37	21.6%	10	0%	-	-	-	NULL
CAND2	23066	genome.wustl.edu	37	3	12875305	12875305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012298.2	+1	validated	p.R1062C	1.000	118	0%	168	33.3%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIP120
NUP210	23225	genome.wustl.edu	37	3	13393384	13393384	+	Missense_Mutation	SNP	C	C	T	rs433032	byCluster;byHapMap	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024923.2	-1	reviewed	p.A944T	0.333	77	0%	62	29%	66	0%	possibly_damaging(0.68)	tolerated(0.1)	deleterious(0.529)	NULL
HDAC11	79885	genome.wustl.edu	37	3	13525045	13525045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024827.3	+1	reviewed	p.R78H	1.000	4	0.000	13	0.538	13	0%	possibly_damaging(0.938)	tolerated(0.08)	deleterious(0.683)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
CHCHD4	131474	genome.wustl.edu	37	3	14154579	14154579	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144636.2	-1	validated	p.T92	0.601	64	0%	105	33.3%	16	0%	-	-	-	HMMPfam_CHCH
SLC6A6	6533	genome.wustl.edu	37	3	14487241	14487241	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134367.1	+1	validated	p.P82	0.127	135	0%	153	38.6%	57	0%	-	-	-	HMMPfam_SNF
SLC6A6	6533	genome.wustl.edu	37	3	14526454	14526454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134367.1	+1	validated	p.R601H	0.000	32	0%	44	36.4%	26	0%	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	NULL
C3orf20	84077	genome.wustl.edu	37	3	14724409	14724409	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032137.4	+1	validated	p.P63	0.000	168	0%	125	40.8%	0	-	-	-	-	NULL
C3orf20	84077	genome.wustl.edu	37	3	14801422	14801422	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032137.4	+1	validated	p.L757	0.878	44	0%	72	13.9%	0	-	-	-	-	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15124035	15124035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022340.2	-1	validated	p.R227C	0.998	79	0%	118	34.7%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
CAPN7	23473	genome.wustl.edu	37	3	15265043	15265043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014296.2	+1	reviewed	p.R234C	1.000	62	0%	96	39.6%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CysPc,superfamily_SSF54001
COLQ	8292	genome.wustl.edu	37	3	15493082	15493082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000383782	-1	known	p.G318D	0.001	160	0%	104	14.4%	9	0%	-	-	-	NULL
ANKRD28	23243	genome.wustl.edu	37	3	15737709	15737709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015199.2	-1	provisional	p.R501C	1.000	45	0%	59	37.3%	10	0%	benign(0.101)	tolerated(0.09)	neutral(0.304)	HMMPfam_Ank,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16216813	16216813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_054110.4	+1	validated	p.S52I	0.016	93	0%	109	11.9%	1	100%	benign(0.043)	deleterious(0)	neutral(0.447)	NULL
OXNAD1	92106	genome.wustl.edu	37	3	16312547	16312547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138381.2	+1	validated	p.L30F	0.000	101	0%	147	10.9%	14	0%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
OXNAD1	92106	genome.wustl.edu	37	3	16327910	16327910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138381.2	+1	validated	p.R82H	0.913	124	0%	206	31.1%	16	0%	benign(0.008)	tolerated(0.2)	neutral(0.049)	superfamily_Riboflavin_synthase_like_b-brl
PLCL2	23228	genome.wustl.edu	37	3	17052047	17052047	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000419842	+1	known	p.T21M	0.481	161	0.6%	193	25.9%	8	0%	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
SATB1	6304	genome.wustl.edu	37	3	18391082	18391082	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001131010.1	-1	validated	p.L624	0.813	69	0%	45	40%	4	0%	-	-	-	NULL
SATB1	6304	genome.wustl.edu	37	3	18427986	18427986	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001131010.1	-1	validated	p.R442*	1.000	147	0%	159	30.8%	2	0%	-	-	-	HMMPfam_CUT
KCNH8	131096	genome.wustl.edu	37	3	19479730	19479730	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144633.2	+1	reviewed	p.R418*	1.000	270	0%	286	33.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
KCNH8	131096	genome.wustl.edu	37	3	19491744	19491744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144633.2	+1	reviewed	p.L508F	1.000	247	0%	240	22.5%	0	-	possibly_damaging(0.521)	tolerated(0.16)	neutral(0.235)	superfamily_cNMP_binding
EFHB	151651	genome.wustl.edu	37	3	19925941	19925941	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144715.3	-1	validated	p.T700	0.264	171	0%	186	11.3%	0	-	-	-	-	superfamily_EF-hand
EFHB	151651	genome.wustl.edu	37	3	19975259	19975259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144715.3	-1	validated	p.M84I	0.000	282	0%	326	34%	0	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	NULL
KAT2B	8850	genome.wustl.edu	37	3	20167452	20167452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003884.4	+1	reviewed	p.R490H	1.000	123	0%	116	10.3%	20	0%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
TOP2B	7155	genome.wustl.edu	37	3	25656715	25656715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001068.2	-1	reviewed	p.A1186V	1.000	216	0%	207	26.1%	242	0%	benign(0.003)	tolerated(0.3)	neutral(0.029)	HMMPfam_DNA_topoisoIV,superfamily_Topo_IIA_cen
NGLY1	55768	genome.wustl.edu	37	3	25775445	25775445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018297.3	-1	reviewed	p.C393Y	1.000	187	0.5%	211	16.6%	67	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_Cysteine proteinases
SLC4A7	9497	genome.wustl.edu	37	3	27439786	27439786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003615.3	-1	validated	p.Y820C	1.000	263	0%	299	31.8%	9	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HCO3_cotransp
OSBPL10	114884	genome.wustl.edu	37	3	31871604	31871604	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017784.4	-1	reviewed	p.T219	0.998	70	0%	98	54.1%	27	0%	-	-	-	NULL
CMTM8	152189	genome.wustl.edu	37	3	32398922	32398922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178868.3	+1	reviewed	p.A69T	1.000	159	0%	168	31.5%	44	0%	benign(0.108)	deleterious(0.04)	neutral(0.357)	HMMPfam_MARVEL
CMTM7	112616	genome.wustl.edu	37	3	32483465	32483465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138410.2	+1	reviewed	p.R98H	0.992	149	0%	153	30.7%	165	0%	unknown(0)	tolerated(0.15)	-	HMMPfam_MARVEL
TRIM71	131405	genome.wustl.edu	37	3	32927530	32927530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039111.1	+1	provisional	p.E376fs	1.000	-	-	-	-	-	-	-	-	-	NULL
TMPPE	643853	genome.wustl.edu	37	3	33135103	33135103	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039770.2	-1	validated	p.V195	1.000	59	0%	49	12.2%	2	0%	-	-	-	NULL
SUSD5	26032	genome.wustl.edu	37	3	33194281	33194281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015551.1	-1	validated	p.R615W	1.000	99	0%	86	39.5%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FBXL2	25827	genome.wustl.edu	37	3	33418806	33418806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012157.3	+1	reviewed	p.G277D	1.000	199	0%	167	31.1%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
UBP1	7342	genome.wustl.edu	37	3	33437717	33437717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128161.1	-1	validated	p.V443M	0.000	129	0%	164	14%	36	0%	benign(0.096)	tolerated(0.11)	neutral(0.279)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36873377	36873377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014831.2	-1	provisional	p.C1972Y	1.000	354	0%	307	27.7%	4	0%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36898114	36898114	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014831.2	-1	provisional	p.S439	1.000	408	0%	432	30.1%	2	0%	-	-	-	NULL
TRANK1	9881	genome.wustl.edu	37	3	36899434	36899434	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000429976	-1	known	p.T542	0.605	102	0%	111	13.5%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CTDSPL	10217	genome.wustl.edu	37	3	38022236	38022236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008392.1	+1	validated	p.P237S	1.000	28	0%	33	30.3%	36	0%	benign(0.422)	deleterious(0)	deleterious(0.582)	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
VILL	50853	genome.wustl.edu	37	3	38044778	38044778	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015873.3	+1	reviewed	p.G593	1.000	10	0%	16	25%	2	0%	-	-	-	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
PLCD1	5333	genome.wustl.edu	37	3	38050090	38050090	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130964.1	-1	validated	p.D608	0.050	40	0%	41	34.1%	5	0%	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
ACAA1	30	genome.wustl.edu	37	3	38167177	38167177	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001607.3	-1	reviewed	p.R360*	0.998	77	0%	103	38.8%	126	0%	-	-	-	HMMPfam_Thiolase_C,superfamily_Thiolase-like
SLC22A14	9389	genome.wustl.edu	37	3	38357858	38357858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004803.3	+1	validated	p.A526T	0.015	88	0%	75	21.3%	0	-	benign(0.19)	tolerated(0.06)	neutral(0.341)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
XYLB	9942	genome.wustl.edu	37	3	38415957	38415957	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005108.3	+1	reviewed	p.S284	0.618	54	0%	49	14.3%	4	0%	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
SCN5A	6331	genome.wustl.edu	37	3	38628962	38628962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099404.1	-1	reviewed	p.V789I	1.000	83	0%	93	35.5%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38888902	38888902	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014139.2	-1	validated	p.W1553*	1.000	81	0%	85	38.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GORASP1	64689	genome.wustl.edu	37	3	39139890	39139890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031899.2	-1	reviewed	p.T387I	0.929	89	0%	102	24.5%	42	0%	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
TTC21A	199223	genome.wustl.edu	37	3	39162626	39162626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105513.2	+1	validated	p.L355M	0.001	53	0%	78	11.5%	1	0%	possibly_damaging(0.822)	tolerated(0.05)	deleterious(0.656)	HMMSmart_SM00028,superfamily_TPR-like
XIRP1	165904	genome.wustl.edu	37	3	39230786	39230786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194293.2	-1	provisional	p.A51S	0.968	24	0%	30	40%	1	0%	possibly_damaging(0.911)	tolerated(0.15)	deleterious(0.604)	NULL
ENTPD3	956	genome.wustl.edu	37	3	40453382	40453382	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001248.2	+1	validated	p.G122	0.726	147	0%	136	39%	9	0%	-	-	-	HMMPfam_GDA1_CD39
ZNF621	285268	genome.wustl.edu	37	3	40574462	40574462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098414.1	+1	validated	p.L401M	0.993	13	0%	34	23.5%	14	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41275178	41275178	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098209.1	+1	reviewed	p.V448	1.000	339	0%	425	30.4%	416	0%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
CTNNB1	1499	genome.wustl.edu	37	3	41279559	41279559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098209.1	+1	reviewed	p.R710H	1.000	294	0.3%	301	14.6%	391	0%	possibly_damaging(0.461)	tolerated(0.36)	neutral(0.171)	NULL
ULK4	54986	genome.wustl.edu	37	3	41504706	41504706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017886.2	-1	validated	p.A1089T	0.996	213	0%	195	33.3%	9	0%	benign(0.01)	tolerated(0.36)	neutral(0.021)	superfamily_ARM-type_fold
TRAK1	22906	genome.wustl.edu	37	3	42229629	42229629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042646.1	+1	validated	p.C191*	1.000	152	0%	144	36.8%	28	0%	-	-	-	HMMPfam_HAP1_N
SEC22C	9117	genome.wustl.edu	37	3	42605030	42605030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032970.2	-1	reviewed	p.A111T	0.991	79	0%	145	27.6%	53	0%	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	superfamily_SNARE-like
NKTR	4820	genome.wustl.edu	37	3	42684015	42684015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005385.3	+1	reviewed	p.R1357W	1.000	56	0%	122	28.7%	36	0%	unknown(0)	deleterious(0)	-	NULL
ZBTB47	92999	genome.wustl.edu	37	3	42704520	42704520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145166.3	+1	validated	p.M170I	1.000	36	0%	68	35.3%	19	0%	benign(0.05)	deleterious(0.01)	neutral(0.409)	superfamily_SSF57667
HHATL	57467	genome.wustl.edu	37	3	42734297	42734297	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000426666	-1	known	p.A107T	0.941	234	0%	268	13.1%	0	-	-	-	-	NULL
ZNF445	353274	genome.wustl.edu	37	3	44489237	44489237	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181489.5	-1	validated	p.R642	0.002	94	0%	148	12.8%	6	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF167	55888	genome.wustl.edu	37	3	44612272	44612272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018651.2	+1	validated	p.G557D	1.000	111	0%	190	34.7%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF35	7584	genome.wustl.edu	37	3	44700245	44700245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003420.3	+1	validated	p.E130D	0.964	181	0%	190	24.7%	13	0%	benign(0.223)	-	-	NULL
CLEC3B	7123	genome.wustl.edu	37	3	45077259	45077259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003278.2	+1	validated	p.R151H	0.000	20	0%	22	40.9%	3	0%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ALS2CL	259173	genome.wustl.edu	37	3	46721988	46721988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_147129.2	-1	validated	p.G494S	1.000	42	0%	49	10.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
NBEAL2	23218	genome.wustl.edu	37	3	47045639	47045639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015175.1	+1	validated	p.R1985H	0.999	75	0%	62	33.9%	56	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PH domain-like
NBEAL2	23218	genome.wustl.edu	37	3	47045784	47045784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015175.1	+1	validated	p.N2033K	1.000	43	0%	35	25.7%	29	0%	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	superfamily_PH domain-like
SETD2	29072	genome.wustl.edu	37	3	47125793	47125793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014159.6	-1	reviewed	p.R1826H	0.999	134	0%	176	38.6%	48	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD2	29072	genome.wustl.edu	37	3	47163019	47163019	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014159.6	-1	reviewed	p.E1036A	0.999	186	0%	267	13.1%	24	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
PTPN23	25930	genome.wustl.edu	37	3	47446253	47446253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015466.2	+1	validated	p.A91T	0.968	12	0%	32	34.4%	13	0%	benign(0.424)	tolerated(0.43)	neutral(0.151)	HMMPfam_BRO1
PTPN23	25930	genome.wustl.edu	37	3	47449926	47449926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015466.2	+1	validated	p.A426T	1.000	50	0%	65	26.2%	40	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX30	22907	genome.wustl.edu	37	3	47887758	47887758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138615.2	+1	reviewed	p.G399D	1.000	104	0%	128	34.4%	55	0%	benign(0.123)	tolerated(0.06)	neutral(0.333)	NULL
ZNF589	51385	genome.wustl.edu	37	3	48298220	48298220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000457782	+1	known	p.A39V	1.000	16	0%	30	16.7%	13	0%	unknown(0)	-	-	NULL
ATRIP	84126	genome.wustl.edu	37	3	48498781	48498781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130384.1	+1	reviewed	p.T265M	0.868	29	0%	77	29.9%	8	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
COL7A1	1294	genome.wustl.edu	37	3	48607921	48607921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000094.3	-1	reviewed	p.A2453T	0.844	37	0%	39	20.5%	4	0%	unknown(0)	tolerated(0.43)	-	HMMPfam_Collagen
COL7A1	1294	genome.wustl.edu	37	3	48627985	48627985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000094.3	-1	reviewed	p.R605W	0.302	50	0%	57	33.3%	2	0%	unknown(0)	deleterious(0)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CELSR3	1951	genome.wustl.edu	37	3	48692572	48692572	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001407.2	-1	reviewed	p.S1631	0.939	13	0%	23	47.8%	1	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CELSR3	1951	genome.wustl.edu	37	3	48699933	48699933	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001407.2	-1	reviewed	p.G45	0.000	15	0%	17	35.3%	0	-	-	-	-	NULL
NCKIPSD	51517	genome.wustl.edu	37	3	48717012	48717012	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000415281	-1	known	p.A231T	0.006	39	0%	83	41%	67	0%	-	-	-	NULL
P4HTM	54681	genome.wustl.edu	37	3	49042339	49042339	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177938.2	+1	reviewed	p.S311	0.096	13	0%	10	50%	28	0%	-	-	-	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc
LOC100287476	100287476	genome.wustl.edu	37	3	49049668	49049668	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342334.1	-1	model	p.R185*	0.962	34	0%	62	14.5%	86	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR6	11180	genome.wustl.edu	37	3	49049981	49049981	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018031.3	+1	reviewed	p.S368	0.002	25	0%	34	20.6%	148	0%	-	-	-	superfamily_WD40 repeat-like
WDR6	11180	genome.wustl.edu	37	3	49051263	49051263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018031.3	+1	reviewed	p.A796T	0.005	29	0%	37	35.1%	166	0%	benign(0.027)	tolerated(0.47)	neutral(0.012)	superfamily_WD40 repeat-like
QARS	5859	genome.wustl.edu	37	3	49137518	49137518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005051.1	-1	reviewed	p.R391C	1.000	87	0%	122	23%	359	0%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
USP19	10869	genome.wustl.edu	37	3	49153966	49153966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006677.1	-1	provisional	p.H300Y	1.000	48	0%	56	16.1%	49	0%	benign(0.046)	tolerated(0.17)	neutral(0.061)	superfamily_HSP20-like chaperones,HMMPfam_DUF1872
LAMB2	3913	genome.wustl.edu	37	3	49158714	49158714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002292.3	-1	reviewed	p.R1781H	0.968	23	0%	32	28.1%	257	0%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
LAMB2	3913	genome.wustl.edu	37	3	49163583	49163583	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002292.3	-1	reviewed	p.L721	0.995	7	0.000	26	0.538	53	0%	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49167058	49167058	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002292.3	-1	reviewed	p.G499	0.736	19	0%	26	38.5%	51	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_SSF57196
LAMB2	3913	genome.wustl.edu	37	3	49168864	49168864	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002292.3	-1	reviewed	p.R220	0.981	29	0%	43	32.6%	58	0%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT
LAMB2	3913	genome.wustl.edu	37	3	49169768	49169768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002292.3	-1	reviewed	p.R107H	1.000	36	0%	29	13.8%	45	0%	possibly_damaging(0.812)	tolerated(0.21)	neutral(0.349)	HMMPfam_Laminin_N,HMMSmart_LamNT
CCDC36	339834	genome.wustl.edu	37	3	49282087	49282087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000366429	+1	known	p.R135H	1.000	62	0%	106	31.1%	0	-	unknown(0)	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49690733	49690733	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003458.3	+1	reviewed	p.T1248	0.000	22	0%	29	51.7%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49699197	49699197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003458.3	+1	reviewed	p.S3307C	0.985	47	0%	44	38.6%	1	0%	unknown(0)	-	-	NULL
APEH	327	genome.wustl.edu	37	3	49720135	49720135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001640.3	+1	reviewed	p.A617T	0.994	33	0%	39	66.7%	235	0%	benign(0.014)	deleterious(0.02)	neutral(0.384)	HMMPfam_Peptidase_S9,superfamily_SSF53474
GMPPB	29925	genome.wustl.edu	37	3	49760073	49760073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013334.2	-1	reviewed	p.A173T	1.000	23	0%	20	20%	43	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_NTP_transferase,superfamily_SSF53448
IP6K1	9807	genome.wustl.edu	37	3	49785353	49785353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153273.3	-1	reviewed	p.R41C	1.000	57	0%	74	33.8%	33	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_SAICAR synthase-like
MST1R	4486	genome.wustl.edu	37	3	49940651	49940651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002447.2	-1	validated	p.A131V	0.001	15	0%	24	45.8%	3	0%	possibly_damaging(0.49)	tolerated(0.53)	neutral(0.171)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MON1A	84315	genome.wustl.edu	37	3	49946462	49946462	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000313379	-1	known	p.R445H	0.005	21	0%	19	31.6%	16	0%	-	-	-	HMMPfam_Mon1
SEMA3F	6405	genome.wustl.edu	37	3	50211311	50211311	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004186.3	+1	validated	p.H66	0.885	15	0%	20	35%	30	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
RASSF1	11186	genome.wustl.edu	37	3	50368119	50368119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170714.1	-1	reviewed	p.R310C	1.000	16	0%	27	40.7%	41	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TMEM115	11070	genome.wustl.edu	37	3	50392883	50392883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007024.4	-1	validated	p.A316V	0.993	22	0%	29	20.7%	104	0%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51399346	51399346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004947.3	+1	validated	p.A1688V	1.000	22	0%	40	37.5%	0	-	benign(0.064)	tolerated(0.76)	neutral(0.005)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51454240	51454240	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014703.2	-1	validated	e15+1	1.000	18	0%	26	30.8%	0	-	-	-	-	-
RAD54L2	23132	genome.wustl.edu	37	3	51679218	51679218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015106.2	+1	validated	p.R877C	1.000	61	0%	101	27.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54L2	23132	genome.wustl.edu	37	3	51697406	51697406	+	Silent	SNP	C	C	T	rs192987707	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000432863	+1	known	p.R1287*	0.892	28	0%	51	27.5%	3	0%	-	-	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51749334	51749334	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000839.3	+1	reviewed	p.G515	0.869	25	0%	49	30.6%	1	0%	-	-	-	HMMPfam_NCD3G,superfamily_Periplasmic binding protein-like I
PCBP4	57060	genome.wustl.edu	37	3	51994615	51994615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020418.3	-1	reviewed	p.R27H	1.000	21	0%	35	51.4%	162	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DUSP7	1849	genome.wustl.edu	37	3	52088222	52088222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001947.3	-1	validated	p.A178V	1.000	12	0%	11	54.5%	23	0%	possibly_damaging(0.865)	tolerated(0.06)	deleterious(0.657)	NULL
ALAS1	211	genome.wustl.edu	37	3	52245362	52245362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000688.4	+1	validated	p.R465Q	0.998	87	0%	159	17%	152	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
DNAH1	25981	genome.wustl.edu	37	3	52398884	52398884	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015512.4	+1	validated	p.N1789	0.211	38	0%	32	18.8%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52426553	52426553	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000480649	+1	known	p.A187V	1.000	26	0%	23	26.1%	3	0%	-	-	-	NULL
BAP1	8314	genome.wustl.edu	37	3	52437675	52437675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004656.2	-1	reviewed	p.A496T	1.000	15	0%	24	33.3%	75	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHF7	51533	genome.wustl.edu	37	3	52456335	52456335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016483.4	+1	reviewed	p.D260Y	1.000	130	0%	174	34.5%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_RING,HMMSmart_PHD
TNNC1	7134	genome.wustl.edu	37	3	52486234	52486234	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003280.2	-1	reviewed	p.G30	0.018	10	0%	21	23.8%	0	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
NISCH	11188	genome.wustl.edu	37	3	52526264	52526264	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007184.3	+1	validated	p.P1427	0.040	20	0%	23	52.2%	87	0%	-	-	-	NULL
PBRM1	55193	genome.wustl.edu	37	3	52696200	52696200	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018165.4	-1	validated	p.D159	0.533	309	0%	432	31.2%	32	0%	-	-	-	superfamily_Bromodomain
ITIH1	3697	genome.wustl.edu	37	3	52822322	52822322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002215.2	+1	reviewed	p.P694S	1.000	12	0.000	6	0.667	0	-	possibly_damaging(0.838)	deleterious(0)	deleterious(0.764)	NULL
ITIH3	3699	genome.wustl.edu	37	3	52833018	52833018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002217.3	+1	validated	p.R234C	1.000	21	0%	17	64.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM110	375346	genome.wustl.edu	37	3	52877772	52877772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198563.1	-1	provisional	p.A195T	1.000	54	0%	46	13%	26	0%	benign(0.355)	tolerated(0.42)	neutral(0.127)	NULL
SFMBT1	51460	genome.wustl.edu	37	3	52950226	52950226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005158.1	-1	reviewed	p.P474S	0.885	73	0%	121	30.6%	6	0%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
CACNA1D	776	genome.wustl.edu	37	3	53844117	53844117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000720.2	+1	validated	p.P2015L	0.998	42	0%	43	23.3%	0	-	probably_damaging(1)	tolerated(0.66)	deleterious(0.502)	NULL
IL17RB	55540	genome.wustl.edu	37	3	53886064	53886064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018725.3	+1	reviewed	p.T89A	0.064	71	0%	106	24.5%	3	0%	benign(0.059)	tolerated(0.14)	neutral(0.254)	NULL
IL17RB	55540	genome.wustl.edu	37	3	53892775	53892775	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018725.3	+1	reviewed	p.S259	0.596	39	0%	49	24.5%	5	0%	-	-	-	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54871257	54871257	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018398.2	+1	reviewed	p.T490	0.995	196	0%	209	35.9%	0	-	-	-	-	HMMPfam_Cache_1
WNT5A	7474	genome.wustl.edu	37	3	55504331	55504331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003392.3	-1	reviewed	p.R311H	1.000	40	0%	49	38.8%	10	0%	benign(0.005)	tolerated(0.56)	neutral(0.006)	HMMPfam_wnt,HMMSmart_SM00097
ERC2	26059	genome.wustl.edu	37	3	56207487	56207487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015576.1	-1	validated	p.V379A	1.000	106	0%	91	24.2%	0	-	possibly_damaging(0.851)	deleterious(0)	deleterious(0.772)	HMMPfam_Cast
APPL1	26060	genome.wustl.edu	37	3	57276171	57276171	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012096.2	+1	reviewed	e6+1	1.000	36	0%	57	15.8%	0	-	-	-	-	-
FLNB	2317	genome.wustl.edu	37	3	58081946	58081946	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001457.3	+1	reviewed	e6+1	1.000	45	0%	53	30.2%	0	-	-	-	-	-
KCTD6	200845	genome.wustl.edu	37	3	58486763	58486763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128214.1	+1	validated	p.A40T	1.000	115	0%	189	24.3%	25	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
FAM3D	131177	genome.wustl.edu	37	3	58620047	58620047	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138805.2	-1	validated	p.L212	0.967	86	0%	89	34.8%	1	0%	-	-	-	NULL
PTPRG	5793	genome.wustl.edu	37	3	61975388	61975388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002841.3	+1	reviewed	p.R94G	0.867	215	0%	197	39.6%	18	0%	benign(0.088)	deleterious(0)	neutral(0.451)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRG	5793	genome.wustl.edu	37	3	62229564	62229564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002841.3	+1	reviewed	p.P820H	1.000	128	0%	158	16.5%	9	0%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	superfamily_(Phosphotyrosine protein) phosphatases II
PTPRG	5793	genome.wustl.edu	37	3	62248482	62248482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002841.3	+1	reviewed	p.R857C	1.000	118	0%	134	10.4%	19	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS	8618	genome.wustl.edu	37	3	62648018	62648018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003716.3	-1	reviewed	p.R314C	1.000	175	0%	212	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTS9	56999	genome.wustl.edu	37	3	64589727	64589727	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000481060	-1	known	p.T262M	0.019	90	0%	92	32.6%	70	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MAGI1	9223	genome.wustl.edu	37	3	65342397	65342397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033057.1	-1	reviewed	p.V1349I	0.000	118	0%	85	32.9%	20	0%	unknown(0)	tolerated(0.24)	-	NULL
MAGI1	9223	genome.wustl.edu	37	3	65361600	65361600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033057.1	-1	reviewed	p.P1006S	1.000	121	0%	179	19.6%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI1	9223	genome.wustl.edu	37	3	65415325	65415325	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000460329	-1	known	p.A560V	1.000	177	0%	228	33.8%	14	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SUCLG2	8801	genome.wustl.edu	37	3	67451221	67451221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003848.3	-1	reviewed	p.A373T	1.000	155	0%	167	36.5%	54	0%	possibly_damaging(0.669)	deleterious(0)	deleterious(0.681)	HMMPfam_Ligase_CoA,superfamily_CoA_ligase
FAM19A4	151647	genome.wustl.edu	37	3	68802126	68802126	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005527.1	-1	reviewed	p.V58	1.000	94	0%	85	29.4%	0	-	-	-	-	NULL
TMF1	7110	genome.wustl.edu	37	3	69097301	69097301	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007114.2	-1	validated	p.S185	0.222	362	0.3%	335	38.2%	14	0%	-	-	-	NULL
LMOD3	56203	genome.wustl.edu	37	3	69168215	69168215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198271.3	-1	validated	p.W431R	1.000	133	0%	144	29.9%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
MITF	4286	genome.wustl.edu	37	3	69928453	69928453	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198159.2	+1	reviewed	p.P91	0.222	39	0%	29	55.2%	3	0%	-	-	-	NULL
RYBP	23429	genome.wustl.edu	37	3	72428550	72428550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012234.4	-1	validated	p.A53T	1.000	209	0%	214	29.9%	25	0%	unknown(0)	deleterious(0.01)	-	NULL
GXYLT2	727936	genome.wustl.edu	37	3	73016813	73016813	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080393.1	+1	provisional	p.G364	0.576	76	0%	92	35.9%	39	0%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_SSF53448
CNTN3	5067	genome.wustl.edu	37	3	74350839	74350839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020872.1	-1	validated	p.A635D	0.996	112	0%	114	28.9%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ROBO2	6092	genome.wustl.edu	37	3	77607167	77607167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002942.3	+1	reviewed	p.A435V	1.000	124	0%	118	36.4%	19	0%	benign(0.135)	tolerated(0.88)	neutral(0.011)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO2	6092	genome.wustl.edu	37	3	77614132	77614132	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128929.1	+1	reviewed	p.R551C	0.001	109	0%	96	26%	15	0%	-	-	-	NULL
ROBO2	6092	genome.wustl.edu	37	3	77666778	77666778	+	Silent	SNP	C	C	T	rs143561771	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128929.1	+1	reviewed	p.R1117C	0.888	168	0%	225	34.2%	38	0%	-	-	-	NULL
ROBO2	6092	genome.wustl.edu	37	3	77693984	77693984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002942.3	+1	reviewed	p.R1355H	1.000	159	0.6%	193	32.6%	28	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78666967	78666967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002941.3	-1	reviewed	p.T1367M	1.000	79	0%	80	32.5%	29	0%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78708863	78708863	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002941.3	-1	reviewed	p.T805	0.478	14	0%	22	18.2%	21	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CADM2	253559	genome.wustl.edu	37	3	86115894	86115894	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153184.3	+1	validated	p.S425	1.000	123	0%	161	25.5%	0	-	-	-	-	NULL
HTR1F	3355	genome.wustl.edu	37	3	88040670	88040670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000866.3	+1	validated	p.D257E	0.985	120	0%	151	33.8%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
ZNF654	55279	genome.wustl.edu	37	3	88188723	88188723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018293.2	+1	validated	p.S88N	0.981	100	0%	137	29.2%	7	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
STX19	415117	genome.wustl.edu	37	3	93733863	93733863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001850.1	-1	provisional	p.R84K	1.000	336	0%	432	31%	11	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Syntaxin,superfamily_t-snare
DHFRL1	200895	genome.wustl.edu	37	3	93780275	93780275	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_176815.3	-1	provisional	p.P27	0.053	171	0%	205	31.2%	2	0%	-	-	-	HMMPfam_DHFR_1,superfamily_SSF53597
MINA	84864	genome.wustl.edu	37	3	97686092	97686092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042533.1	-1	validated	p.D116Y	0.996	311	0%	536	28.9%	25	0%	possibly_damaging(0.508)	tolerated(0.06)	deleterious(0.493)	HMMPfam_Cupin_4,superfamily_Clavaminate synthase-like
GABRR3	200959	genome.wustl.edu	37	3	97726637	97726637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000329044	-1	known	p.S14Y	1.000	81	0%	100	31%	0	-	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	HMMPfam_Neur_chan_LBD
GABRR3	200959	genome.wustl.edu	37	3	97753710	97753710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105580.1	-1	provisional	p.T41I	0.006	179	0%	148	27.7%	0	-	benign(0.087)	tolerated(0.06)	neutral(0.329)	NULL
FILIP1L	11259	genome.wustl.edu	37	3	99569388	99569388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182909.2	-1	validated	p.R378C	0.918	700	0%	788	33.8%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prefoldin,HMMPfam_CortBP2
TBC1D23	55773	genome.wustl.edu	37	3	100000585	100000585	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018309.2	+1	validated	e3-1	1.000	112	0%	101	28.7%	0	-	-	-	-	-
GPR128	84873	genome.wustl.edu	37	3	100378623	100378623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032787.2	+1	validated	p.N639D	0.778	153	0%	177	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
SENP7	57337	genome.wustl.edu	37	3	101136555	101136555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020654.3	-1	validated	p.A122T	1.000	262	0%	325	36.3%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101383902	101383902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014415.3	-1	validated	p.R510H	1.000	211	0%	341	32.6%	12	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CEP97	79598	genome.wustl.edu	37	3	101476482	101476482	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024548.2	+1	provisional	p.P344	0.944	57	0%	90	11.1%	7	0%	-	-	-	NULL
FAM55C	91775	genome.wustl.edu	37	3	101520222	101520222	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134456.1	+1	validated	p.D79	1.000	143	0%	178	30.3%	4	0%	-	-	-	HMMPfam_Neurexophilin
NFKBIZ	64332	genome.wustl.edu	37	3	101572630	101572630	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031419.2	+1	reviewed	p.W420*	1.000	98	0%	131	26.7%	2	0%	-	-	-	superfamily_Ankyrin repeat
ZPLD1	131368	genome.wustl.edu	37	3	102196437	102196437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175056.1	+1	provisional	p.G424D	1.000	302	0%	322	38.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CBLB	868	genome.wustl.edu	37	3	105438899	105438899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170662.3	-1	validated	p.V467I	1.000	83	0%	86	40.7%	29	0%	benign(0.017)	tolerated(0.39)	neutral(0.017)	NULL
BBX	56987	genome.wustl.edu	37	3	107463525	107463525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142568.1	+1	validated	p.R240S	0.998	200	0%	254	33.9%	13	0%	benign(0.004)	tolerated(0.09)	neutral(0.296)	HMMPfam_DUF2028
IFT57	55081	genome.wustl.edu	37	3	107938332	107938332	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018010.3	-1	validated	p.R100	0.008	142	0%	140	36.4%	62	0%	-	-	-	HMMPfam_IFT57
MYH15	22989	genome.wustl.edu	37	3	108117552	108117552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014981.1	-1	validated	p.R1709C	0.000	364	0%	344	16.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Myosin_tail_1
KIAA1524	57650	genome.wustl.edu	37	3	108288365	108288365	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020890.2	-1	validated	p.S328	0.786	76	0%	86	12.8%	14	0%	-	-	-	superfamily_ARM repeat
PHLDB2	90102	genome.wustl.edu	37	3	111564735	111564736	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134437.1	+1	validated	p.E9fs	0.035:0.053	-	-	-	-	-	-	-	-	-	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111603877	111603877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134438.1	+1	validated	p.A318V	0.021	161	0%	160	35%	1	0%	benign(0.098)	tolerated(0.67)	neutral(0.010)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111888085	111888085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183061.1	-1	validated	p.A1004T	0.333	205	0%	153	13.1%	0	-	possibly_damaging(0.527)	tolerated(0.31)	neutral(0.205)	superfamily_cAMP-binding domain-like
CCDC80	151887	genome.wustl.edu	37	3	112335694	112335694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199511.1	-1	validated	p.E728D	0.998	213	0%	199	11.6%	44	0%	probably_damaging(0.976)	tolerated(0.38)	neutral(0.435)	NULL
CCDC80	151887	genome.wustl.edu	37	3	112357353	112357353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199511.1	-1	validated	p.R467H	1.000	122	0%	103	11.7%	13	0%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
CD200R1	131450	genome.wustl.edu	37	3	112647835	112647835	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138806.3	-1	reviewed	p.A199	0.287	230	0%	216	39.8%	1	0%	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
BOC	91653	genome.wustl.edu	37	3	112991420	112991420	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033254.2	+1	validated	p.T277	0.242	85	0%	62	33.9%	9	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
BOC	91653	genome.wustl.edu	37	3	113003265	113003265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033254.2	+1	validated	p.G913S	0.984	96	0%	97	34%	4	0%	benign(0.156)	tolerated(0.08)	neutral(0.314)	NULL
WDR52	55779	genome.wustl.edu	37	3	113115489	113115489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018338.3	-1	validated	p.T552M	0.001	152	0%	173	30.1%	1	0%	possibly_damaging(0.693)	deleterious(0.03)	deleterious(0.613)	superfamily_WD40_like
SPICE1	152185	genome.wustl.edu	37	3	113187981	113187981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144718.3	-1	validated	p.T239M	0.311	124	0%	138	28.3%	16	0%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113374194	113374194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009899.2	-1	validated	p.P2112H	1.000	148	0%	165	17.6%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113563383	113563383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017577.4	+1	validated	p.D21N	0.722	69	0%	188	24.5%	1	0%	benign(0.026)	deleterious(0)	neutral(0.446)	NULL
QTRTD1	79691	genome.wustl.edu	37	3	113795785	113795785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024638.2	+1	provisional	p.P248S	1.000	70	0%	70	40%	12	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_TGT,superfamily_tRNA_ribo_trans
DRD3	1814	genome.wustl.edu	37	3	113847724	113847724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000796.3	-1	reviewed	p.T348A	1.000	287	0%	326	32.5%	0	-	possibly_damaging(0.829)	tolerated(0.26)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZBTB20	26137	genome.wustl.edu	37	3	114070337	114070337	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015642.4	-1	validated	p.N123	0.973	56	0%	55	41.8%	0	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
IGSF11	152404	genome.wustl.edu	37	3	118645091	118645091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001015887.1	-1	validated	p.A146V	1.000	118	0%	111	36%	0	-	benign(0.001)	tolerated(1)	-	superfamily_Immunoglobulin
TMEM39A	55254	genome.wustl.edu	37	3	119155804	119155804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018266.1	-1	provisional	p.R316C	1.000	335	0.3%	463	14%	55	0%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Tmp39
C3orf15	89876	genome.wustl.edu	37	3	119451308	119451308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033364.3	+1	validated	p.L396F	1.000	140	0%	212	29.7%	6	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NR1I2	8856	genome.wustl.edu	37	3	119531612	119531612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022002.2	+1	reviewed	p.S239N	0.016	59	0%	66	36.4%	0	-	benign(0.078)	tolerated(0.26)	neutral(0.040)	superfamily_Str_ncl_receptor
GSK3B	2932	genome.wustl.edu	37	3	119634960	119634960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002093.3	-1	reviewed	p.R180Q	1.000	144	0%	117	14.5%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
HGD	3081	genome.wustl.edu	37	3	120357318	120357318	+	Silent	SNP	C	C	T	rs120074171		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000494453	-1	known	p.G137D	0.998	152	0.7%	215	24.2%	77	0%	-	-	-	HMMPfam_HgmA,superfamily_RmlC-like cupins
GTF2E1	2960	genome.wustl.edu	37	3	120500292	120500292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005513.2	+1	validated	p.R432H	0.980	207	0.5%	213	20.2%	18	0%	possibly_damaging(0.736)	deleterious(0.03)	deleterious(0.633)	NULL
POLQ	10721	genome.wustl.edu	37	3	121229025	121229025	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199420.3	-1	validated	p.L559	1.000	173	0%	267	27%	2	0%	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121412792	121412792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004487.3	-1	validated	p.A2188V	1.000	388	0.3%	583	17.3%	28	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121416658	121416658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004487.3	-1	validated	p.K899N	0.999	323	0%	472	36.2%	7	0%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
CD86	942	genome.wustl.edu	37	3	121822413	121822413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175862.3	+1	reviewed	p.C40Y	0.735	333	0%	333	26.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
FAM162A	26355	genome.wustl.edu	37	3	122126162	122126162	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014367.3	+1	validated	p.R100*	0.814	75	0%	77	16.9%	1046	0%	-	-	-	HMMPfam_DUF1075
DTX3L	151636	genome.wustl.edu	37	3	122288441	122288441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138287.3	+1	validated	p.A502V	0.971	223	0%	249	28.1%	12	0%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
ADCY5	111	genome.wustl.edu	37	3	123003469	123003469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183357.1	-1	validated	p.P1258S	1.000	125	0%	97	32%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ADCY5	111	genome.wustl.edu	37	3	123005539	123005539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183357.1	-1	validated	p.R1217L	1.000	67	0%	51	33.3%	0	-	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
MYLK	4638	genome.wustl.edu	37	3	123451778	123451778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053025.3	-1	reviewed	p.G494D	1.000	62	0%	82	40.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KALRN	8997	genome.wustl.edu	37	3	124053284	124053284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024660.3	+1	reviewed	p.R528H	1.000	54	0%	47	34%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124209630	124209630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024660.3	+1	reviewed	p.R1494W	0.998	57	0%	60	20%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ITGB5	3693	genome.wustl.edu	37	3	124492537	124492537	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000481591	-1	known	p.E329*	1.000	25	0%	37	21.6%	113	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Integrin_B_tail,superfamily_Integrin beta tail domain
SLC12A8	84561	genome.wustl.edu	37	3	124906179	124906179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024628.5	-1	validated	p.R98C	0.993	31	0%	22	31.8%	3	0%	unknown(0)	deleterious(0)	-	HMMPfam_AA_permease
ZXDC	79364	genome.wustl.edu	37	3	126191007	126191007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025112.4	-1	validated	p.R350Q	1.000	63	0%	65	35.4%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C3orf56	285311	genome.wustl.edu	37	3	126915849	126915849	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000398112	+1	known	p.G107	0.000	213	0%	115	34.8%	0	-	-	-	-	NULL
ABTB1	80325	genome.wustl.edu	37	3	127399619	127399619	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000361019	+1	known	p.P391	0.000	15	0.000	9	0.444	10	0%	-	-	-	NULL
SEC61A1	29927	genome.wustl.edu	37	3	127783771	127783771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013336.3	+1	reviewed	p.R223H	1.000	29	0%	81	28.4%	371	0%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
SEC61A1	29927	genome.wustl.edu	37	3	127785825	127785825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013336.3	+1	reviewed	p.S269L	1.000	37	0%	48	37.5%	342	0%	benign(0.413)	tolerated(0.06)	neutral(0.456)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
ACAD9	28976	genome.wustl.edu	37	3	128628222	128628222	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014049.4	+1	reviewed	p.C507*	0.406	55	0%	60	23.3%	75	0%	-	-	-	NULL
KIAA1257	57501	genome.wustl.edu	37	3	128712111	128712111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020741.2	-1	predicted	p.A13T	0.000	16	0%	23	26.1%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
RAB43	339122	genome.wustl.edu	37	3	128813858	128813858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198490.1	-1	validated	p.A120V	0.893	66	0%	71	15.5%	18	0%	benign(0.129)	deleterious(0)	neutral(0.456)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ISY1	57461	genome.wustl.edu	37	3	128848975	128848975	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020701.2	-1	provisional	p.S269	0.878	51	0%	62	30.6%	115	0%	-	-	-	NULL
ALG1L2	644974	genome.wustl.edu	37	3	129810194	129810194	+	Silent	SNP	G	G	A	rs191936561	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136152.1	+1	validated	p.T37	0.014	32	0%	22	22.7%	0	-	-	-	-	NULL
COL6A6	131873	genome.wustl.edu	37	3	130380774	130380774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102608.1	+1	provisional	p.R2042C	0.986	54	0%	56	46.4%	0	-	possibly_damaging(0.869)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PIK3R4	30849	genome.wustl.edu	37	3	130405121	130405121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014602.2	-1	validated	p.H1137Y	1.000	317	0.3%	270	13%	25	0%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMSmart_WD40,superfamily_WD40_like
PIK3R4	30849	genome.wustl.edu	37	3	130425900	130425900	+	Missense_Mutation	SNP	C	C	T	rs67180852		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014602.2	-1	validated	p.M871I	0.787	69	0%	115	18.3%	28	0%	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_WD40_like
PIK3R4	30849	genome.wustl.edu	37	3	130442284	130442284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014602.2	-1	validated	p.H652R	1.000	194	0%	222	28.4%	14	0%	possibly_damaging(0.849)	tolerated(0.16)	neutral(0.386)	superfamily_ARM-type_fold
ATP2C1	27032	genome.wustl.edu	37	3	130717182	130717182	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000504612	+1	known	p.S766L	1.000	160	0%	161	36%	145	0%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ASTE1	28990	genome.wustl.edu	37	3	130744081	130744081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014065.2	-1	validated	p.R24W	1.000	200	0%	253	32%	11	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_XPG_N,superfamily_SSF88723
NEK11	79858	genome.wustl.edu	37	3	130748640	130748640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024800.4	+1	reviewed	p.V30M	0.000	129	0%	166	29.5%	7	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NEK11	79858	genome.wustl.edu	37	3	130962297	130962297	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024800.4	+1	reviewed	p.A526	0.000	166	0%	205	33.2%	12	0%	-	-	-	NULL
CPNE4	131034	genome.wustl.edu	37	3	131261489	131261489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130808.1	-1	reviewed	p.D484G	0.999	105	0%	118	11%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00327,superfamily_vWA-like
CPNE4	131034	genome.wustl.edu	37	3	131442381	131442381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130808.1	-1	reviewed	p.R90H	1.000	292	0%	287	28.6%	0	-	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ACAD11	84129	genome.wustl.edu	37	3	132294737	132294737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032169.4	-1	validated	p.R627H	1.000	91	0%	138	28.3%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
BFSP2	8419	genome.wustl.edu	37	3	133118940	133118940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003571.2	+1	reviewed	p.R5*	0.013	30	0%	46	26.1%	0	-	-	-	-	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133327424	133327424	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007027.3	-1	reviewed	p.N1460	0.658	182	0%	193	33.7%	70	0%	-	-	-	superfamily_BRCT domain
SLCO2A1	6578	genome.wustl.edu	37	3	133667386	133667386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005630.2	-1	validated	p.L367F	1.000	71	0%	114	29.8%	9	0%	unknown(0)	tolerated(0.29)	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
AMOTL2	51421	genome.wustl.edu	37	3	134086349	134086349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016201.2	-1	reviewed	p.R344H	0.530	50	0%	47	29.8%	18	0%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	NULL
AMOTL2	51421	genome.wustl.edu	37	3	134089587	134089587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016201.2	-1	reviewed	p.R230Q	0.518	31	0%	29	37.9%	16	0%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
CEP63	80254	genome.wustl.edu	37	3	134267967	134267967	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000504929	+1	known	p.N66S	0.032	140	0%	158	14.6%	50	0%	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134967181	134967181	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004441.4	+1	reviewed	p.D840	1.000	74	0%	71	25.4%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PPP2R3A	5523	genome.wustl.edu	37	3	135721567	135721567	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002718.3	+1	reviewed	p.D409	0.002	273	0%	377	33.7%	5	0%	-	-	-	NULL
PCCB	5096	genome.wustl.edu	37	3	136048834	136048834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000532.4	+1	reviewed	p.R529H	0.741	230	0%	218	10.1%	99	0%	possibly_damaging(0.509)	deleterious(0.02)	deleterious(0.553)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
STAG1	10274	genome.wustl.edu	37	3	136219066	136219066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005862.2	-1	reviewed	p.R301C	1.000	68	0%	108	13.9%	31	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_ARM-type_fold
CLDN18	51208	genome.wustl.edu	37	3	137749834	137749834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002026.2	+1	validated	p.A213T	0.685	240	0%	220	25.5%	0	-	possibly_damaging(0.645)	deleterious(0.03)	deleterious(0.591)	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137822374	137822374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173543.2	-1	validated	p.R147H	0.919	16	0%	13	30.8%	1	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
ARMC8	25852	genome.wustl.edu	37	3	137964044	137964044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014154.2	+1	validated	p.R371C	1.000	60	0%	46	50%	16	0%	possibly_damaging(0.535)	deleterious(0)	deleterious(0.625)	superfamily_ARM repeat
COPB2	9276	genome.wustl.edu	37	3	139081249	139081249	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004766.2	-1	validated	p.E665	1.000	235	0%	186	29%	218	0%	-	-	-	HMMPfam_Coatomer_WDAD
COPB2	9276	genome.wustl.edu	37	3	139092642	139092642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004766.2	-1	validated	p.R254C	1.000	170	0%	176	29.5%	184	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TRIM42	287015	genome.wustl.edu	37	3	140397404	140397404	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152616.3	+1	reviewed	p.I111	0.952	114	0%	116	33.6%	0	-	-	-	-	NULL
TRIM42	287015	genome.wustl.edu	37	3	140401334	140401334	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152616.3	+1	reviewed	p.S124	0.977	126	0%	101	11.9%	0	-	-	-	-	superfamily_RING/U-box
TRIM42	287015	genome.wustl.edu	37	3	140401695	140401695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152616.3	+1	reviewed	p.R245C	0.008	114	0%	76	17.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00336
ACPL2	92370	genome.wustl.edu	37	3	141011688	141011688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037172.1	+1	validated	p.R362C	1.000	282	0%	206	18%	88	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
ZBTB38	253461	genome.wustl.edu	37	3	141162393	141162393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080412.2	+1	validated	p.R388Q	0.349	265	0%	250	30.8%	7	0%	possibly_damaging(0.938)	tolerated(0.37)	neutral(0.403)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
LOC729687	729687	genome.wustl.edu	37	3	141583986	141583986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001133695.3	-1	model	p.A46T	0.977	35	0%	65	36.9%	2	0%	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527
ATR	545	genome.wustl.edu	37	3	142168414	142168414	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001184.3	-1	reviewed	p.R2598*	1.000	100	0%	144	29.2%	28	0%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PLS1	5357	genome.wustl.edu	37	3	142388319	142388319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145319.1	+1	reviewed	p.R53H	1.000	345	0%	337	29.4%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF47473
PLS1	5357	genome.wustl.edu	37	3	142430717	142430717	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145319.1	+1	reviewed	p.Y586	0.687	263	0%	349	33.5%	32	0%	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
PLS1	5357	genome.wustl.edu	37	3	142430828	142430828	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145319.1	+1	reviewed	p.K623	1.000	219	0%	305	35.7%	28	0%	-	-	-	HMMPfam_CH,HMMSmart_CH
U2SURP	23350	genome.wustl.edu	37	3	142739454	142739454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080415.1	+1	provisional	p.R218C	1.000	49	0%	83	50.6%	39	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZIC1	7545	genome.wustl.edu	37	3	147128158	147128158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003412.3	+1	reviewed	p.G87S	1.000	14	0%	12	41.7%	29	0%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
ZIC1	7545	genome.wustl.edu	37	3	147128475	147128475	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003412.3	+1	reviewed	p.P192	0.997	18	0%	25	20%	96	0%	-	-	-	NULL
CPB1	1360	genome.wustl.edu	37	3	148545802	148545802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001871.2	+1	reviewed	p.R29C	1.000	178	0%	231	28.6%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
HLTF	6596	genome.wustl.edu	37	3	148757473	148757473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003071.3	-1	reviewed	p.A837V	1.000	49	0%	71	38%	30	0%	possibly_damaging(0.907)	deleterious(0.01)	deleterious(0.766)	superfamily_P-loop containing nucleoside triphosphate hydrolases
WWTR1	25937	genome.wustl.edu	37	3	149260187	149260187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015472.4	-1	validated	p.R236W	0.978	77	0%	67	13.4%	28	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WWTR1	25937	genome.wustl.edu	37	3	149260222	149260222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015472.4	-1	validated	p.A224V	0.889	70	0%	60	36.7%	26	0%	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	NULL
PFN2	5217	genome.wustl.edu	37	3	149686233	149686233	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002628.4	-1	reviewed	p.Y79	0.271	150	0%	194	27.3%	367	0%	-	-	-	HMMPfam_Profilin,HMMSmart_SM00392,superfamily_Profilin (actin-binding protein)
SIAH2	6478	genome.wustl.edu	37	3	150460186	150460186	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005067.5	-1	reviewed	p.Y239	0.986	111	0%	160	33.8%	131	0%	-	-	-	superfamily_Traf_like,HMMPfam_Sina
SIAH2	6478	genome.wustl.edu	37	3	150460266	150460266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005067.5	-1	reviewed	p.P213S	1.000	112	0%	184	13%	89	0%	possibly_damaging(0.553)	deleterious(0.01)	deleterious(0.594)	superfamily_Traf_like,HMMPfam_Sina
MED12L	116931	genome.wustl.edu	37	3	150908596	150908596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053002.4	+1	reviewed	p.A616T	0.963	104	0%	116	10.3%	0	-	possibly_damaging(0.561)	tolerated(0.14)	neutral(0.441)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153840176	153840176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015595.3	+1	validated	p.A132V	0.005	22	0%	15	53.3%	1	0%	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
DHX36	170506	genome.wustl.edu	37	3	154002443	154002443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020865.2	-1	validated	p.A741T	1.000	53	0%	73	38.4%	45	0%	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMPfam_HA2,superfamily_SSF52540
DHX36	170506	genome.wustl.edu	37	3	154010428	154010428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020865.2	-1	validated	p.H576Y	1.000	376	0.3%	493	30.8%	31	0%	benign(0.234)	tolerated(0.06)	neutral(0.346)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
GPR149	344758	genome.wustl.edu	37	3	154147191	154147191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001038705.1	-1	provisional	p.A72S	1.000	186	0%	157	37.6%	0	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	NULL
MME	4311	genome.wustl.edu	37	3	154886357	154886357	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000902.3	+1	reviewed	p.S619	0.819	178	0%	238	32.4%	4	0%	-	-	-	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
PLCH1	23007	genome.wustl.edu	37	3	155212183	155212183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130960.1	-1	validated	p.R661H	1.000	111	0%	126	29.4%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
KCNAB1	7881	genome.wustl.edu	37	3	155861140	155861140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003471.3	+1	reviewed	p.E58G	1.000	158	0%	171	16.4%	0	-	benign(0.316)	deleterious(0.01)	deleterious(0.505)	NULL
CCNL1	57018	genome.wustl.edu	37	3	156866116	156866116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020307.2	-1	validated	p.R499C	1.000	212	0%	262	11.5%	85	0%	unknown(0)	deleterious(0)	-	NULL
GFM1	85476	genome.wustl.edu	37	3	158383128	158383128	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024996.5	+1	reviewed	p.N461	1.000	71	0%	53	22.6%	50	0%	-	-	-	superfamily_EFG_III_V
LXN	56925	genome.wustl.edu	37	3	158386887	158386887	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000482640	-1	known	p.R66C	0.037	144	0%	133	11.3%	7	0%	-	-	-	HMMPfam_Latexin
MFSD1	64747	genome.wustl.edu	37	3	158523262	158523262	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022736.2	+1	validated	p.R110*	1.000	216	0%	276	26.8%	36	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SMC4	10051	genome.wustl.edu	37	3	160143862	160143862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002800.1	+1	validated	p.R827C	1.000	265	0%	334	11.7%	88	0%	possibly_damaging(0.845)	deleterious(0.03)	deleterious(0.689)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160149510	160149510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002800.1	+1	validated	p.A1065V	1.000	143	0%	129	27.9%	64	0%	possibly_damaging(0.671)	tolerated(0.06)	deleterious(0.560)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARL14	80117	genome.wustl.edu	37	3	160395404	160395404	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025047.2	+1	validated	p.D90	1.000	278	0%	330	30.3%	1	0%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
B3GALNT1	8706	genome.wustl.edu	37	3	160804081	160804081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001038628.1	-1	reviewed	p.N154K	1.000	146	0%	171	24.6%	9	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Galactosyl_T
SI	6476	genome.wustl.edu	37	3	164697212	164697212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001041.3	-1	reviewed	p.R1808C	0.006	145	0%	129	22.5%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
SI	6476	genome.wustl.edu	37	3	164737476	164737477	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001041.3	-1	reviewed	p.G1112fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SI	6476	genome.wustl.edu	37	3	164776848	164776848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001041.3	-1	reviewed	p.R434Q	0.000	102	0%	92	15.2%	0	-	benign(0.005)	tolerated(0.68)	neutral(0.002)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164781277	164781277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001041.3	-1	reviewed	p.T287I	0.000	201	0%	167	11.4%	0	-	benign(0.021)	tolerated(0.18)	neutral(0.057)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906382	164906382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014926.2	-1	validated	p.P746L	1.000	134	0%	156	19.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906962	164906962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014926.2	-1	validated	p.A553T	0.999	107	0%	118	26.3%	0	-	possibly_damaging(0.508)	tolerated(0.05)	deleterious(0.515)	superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165548730	165548730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000055.2	-1	reviewed	p.D31G	0.997	121	0%	136	14.7%	1	0%	benign(0.008)	tolerated(0.21)	neutral(0.044)	HMMPfam_COesterase
MECOM	2122	genome.wustl.edu	37	3	168806813	168806813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000494292	-1	known	p.P1178L	1.000	211	0%	238	29.8%	157	0%	possibly_damaging(0.638)	tolerated(0.1)	deleterious(0.510)	NULL
MECOM	2122	genome.wustl.edu	37	3	168818726	168818726	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000494292	-1	known	p.R923	1.000	55	0%	67	40.3%	63	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LRRC34	151827	genome.wustl.edu	37	3	169525456	169525456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153353.4	-1	validated	p.R87H	0.998	93	0%	145	30.3%	1	0%	benign(0.01)	tolerated(0.23)	neutral(0.042)	NULL
LRRC31	79782	genome.wustl.edu	37	3	169557849	169557849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024727.2	-1	validated	p.A527D	0.081	125	0%	216	26.4%	0	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
LRRC31	79782	genome.wustl.edu	37	3	169572614	169572614	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024727.2	-1	validated	p.D326	0.402	124	0%	170	25.9%	0	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
PHC3	80012	genome.wustl.edu	37	3	169890469	169890469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024947.3	-1	validated	p.S71N	1.000	138	0%	163	35%	12	0%	possibly_damaging(0.662)	tolerated(0.07)	deleterious(0.553)	NULL
SKIL	6498	genome.wustl.edu	37	3	170099069	170099069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005414.3	+1	validated	p.Y379C	1.000	118	0%	117	40.2%	22	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TNIK	23043	genome.wustl.edu	37	3	170884942	170884942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015028.2	-1	validated	p.Q297H	1.000	40	0%	38	10.5%	0	-	benign(0.052)	tolerated(0.15)	neutral(0.244)	superfamily_Protein kinase-like (PK-like)
FNDC3B	64778	genome.wustl.edu	37	3	172048427	172048427	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135095.1	+1	validated	p.T492	0.004	137	0%	207	33.3%	44	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SPATA16	83893	genome.wustl.edu	37	3	172694829	172694829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031955.5	-1	reviewed	p.A288T	1.000	242	0%	284	28.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_TPR-like
NLGN1	22871	genome.wustl.edu	37	3	173997267	173997267	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014932.2	+1	reviewed	p.C492	1.000	164	0%	171	34.5%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
ZMAT3	64393	genome.wustl.edu	37	3	178742823	178742823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022470.3	-1	reviewed	p.E284D	1.000	330	0%	304	27%	7	0%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
ZMAT3	64393	genome.wustl.edu	37	3	178748679	178748679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022470.3	-1	reviewed	p.V127I	0.769	280	0%	278	17.6%	5	0%	benign(0.004)	tolerated(0.38)	neutral(0.018)	NULL
ZNF639	51193	genome.wustl.edu	37	3	179051331	179051331	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016331.1	+1	provisional	p.W193*	1.000	93	0%	136	11%	49	0%	-	-	-	NULL
USP13	8975	genome.wustl.edu	37	3	179437789	179437789	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003940.2	+1	validated	p.A289	0.566	78	0%	179	12.8%	6	0%	-	-	-	NULL
USP13	8975	genome.wustl.edu	37	3	179478994	179478994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003940.2	+1	validated	p.M681I	1.000	99	0%	114	25.4%	21	0%	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_UBA,HMMPfam_UCH,HMMSmart_UBA,superfamily_SSF54001
USP13	8975	genome.wustl.edu	37	3	179483520	179483520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003940.2	+1	validated	p.S766N	1.000	99	0%	182	12.1%	9	0%	benign(0.07)	tolerated(0.12)	neutral(0.266)	HMMPfam_UCH,superfamily_UBA_like,HMMSmart_UBA,superfamily_SSF54001
DCUN1D1	54165	genome.wustl.edu	37	3	182683539	182683539	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020640.2	-1	validated	p.N2	1.000	84	0%	115	18.3%	13	0%	-	-	-	NULL
MCCC1	56922	genome.wustl.edu	37	3	182737954	182737954	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020166.3	-1	reviewed	p.G647	0.180	116	0%	78	12.8%	50	0%	-	-	-	superfamily_Hybrid_motif
LAMP3	27074	genome.wustl.edu	37	3	182853647	182853647	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014398.3	-1	validated	p.A325	0.000	426	0%	566	21.9%	4	0%	-	-	-	HMMPfam_Lamp
B3GNT5	84002	genome.wustl.edu	37	3	182988324	182988324	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032047.4	+1	reviewed	p.W246*	1.000	86	0%	161	37.9%	29	0%	-	-	-	HMMPfam_Galactosyl_T
MCF2L2	23101	genome.wustl.edu	37	3	183097179	183097179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015078.2	-1	validated	p.A61T	0.997	49	0%	44	25%	0	-	possibly_damaging(0.9)	tolerated(0.31)	neutral(0.384)	HMMSmart_SM00516
KLHL6	89857	genome.wustl.edu	37	3	183226290	183226290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130446.2	-1	validated	p.R156W	1.000	89	0%	122	31.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
YEATS2	55689	genome.wustl.edu	37	3	183521093	183521093	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018023.4	+1	validated	p.G1184	0.999	20	0%	32	25%	37	0%	-	-	-	NULL
YEATS2	55689	genome.wustl.edu	37	3	183524758	183524758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018023.4	+1	validated	p.L1297I	0.963	32	0%	55	30.9%	49	0%	probably_damaging(0.971)	tolerated(0.33)	neutral(0.437)	NULL
HTR3C	170572	genome.wustl.edu	37	3	183777237	183777237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130770.2	+1	reviewed	p.R245H	1.000	114	0%	179	32.4%	0	-	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
AP2M1	1173	genome.wustl.edu	37	3	183901338	183901338	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004068.3	+1	reviewed	p.S414	1.000	19	0%	27	33.3%	566	0%	-	-	-	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
PSMD2	5708	genome.wustl.edu	37	3	184019642	184019642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002808.3	+1	reviewed	p.A163T	1.000	44	0%	76	26.3%	197	0%	-	-	-	superfamily_ARM-type_fold
SNORD66	692107	genome.wustl.edu	37	3	184043513	184043513	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_003055.1	+1	validated	NULL	0.946	48	0%	105	36.2%	0	-	-	-	-	-
CLCN2	1181	genome.wustl.edu	37	3	184074797	184074797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004366.4	-1	reviewed	p.R357C	1.000	5	0.000	19	0.263	8	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
VPS8	23355	genome.wustl.edu	37	3	184542436	184542436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009921.2	+1	validated	p.D6Y	1.000	173	0%	218	10.6%	3	0%	benign(0.121)	deleterious(0.02)	neutral(0.393)	NULL
C3orf70	285382	genome.wustl.edu	37	3	184801223	184801223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025266.1	-1	predicted	p.A109T	1.000	186	0%	189	30.7%	0	-	possibly_damaging(0.915)	tolerated(0.06)	deleterious(0.689)	NULL
EIF4A2	1974	genome.wustl.edu	37	3	186504995	186504995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001967.3	+1	validated	p.R284H	1.000	165	0%	246	17.1%	593	0.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ST6GAL1	6480	genome.wustl.edu	37	3	186760557	186760557	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003032.2	+1	reviewed	p.V22	0.776	556	0%	374	27.3%	11	0%	-	-	-	NULL
ST6GAL1	6480	genome.wustl.edu	37	3	186760900	186760900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003032.2	+1	reviewed	p.A137T	0.308	129	0%	140	20.7%	14	0%	benign(0.024)	tolerated(0.54)	neutral(0.009)	HMMPfam_Glyco_transf_29
MASP1	5648	genome.wustl.edu	37	3	186947585	186947585	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001879.5	-1	reviewed	p.H468	0.003	72	0%	57	24.6%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MASP1	5648	genome.wustl.edu	37	3	186954003	186954003	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139125.3	-1	reviewed	p.H552	0.359	37	0%	51	9.8%	4	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
TP63	8626	genome.wustl.edu	37	3	189526167	189526167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003722.4	+1	reviewed	p.T144M	1.000	144	0%	95	32.6%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
CCDC50	152137	genome.wustl.edu	37	3	191098498	191098498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178335.2	+1	reviewed	p.A372V	1.000	85	0%	101	34.7%	67	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
HRASLS	57110	genome.wustl.edu	37	3	192973444	192973444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020386.3	+1	validated	p.A2V	0.997	165	0%	208	16.3%	7	0%	benign(0.259)	deleterious(0)	deleterious(0.472)	NULL
ATP13A4	84239	genome.wustl.edu	37	3	193120534	193120534	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032279.2	-1	validated	p.P1166	0.001	132	0%	160	28.7%	0	-	-	-	-	NULL
ATP13A4	84239	genome.wustl.edu	37	3	193176877	193176877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032279.2	-1	validated	p.T556I	1.000	343	0%	414	30%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
LSG1	55341	genome.wustl.edu	37	3	194366921	194366921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018385.2	-1	reviewed	p.A532V	1.000	98	1%	135	31.1%	61	0%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	NULL
TFRC	7037	genome.wustl.edu	37	3	195787075	195787075	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128148.1	-1	validated	p.T504	0.000	41	0%	35	17.1%	104	0%	-	-	-	superfamily_Zn-dependent exopeptidases
PCYT1A	5130	genome.wustl.edu	37	3	195974277	195974277	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005017.2	-1	provisional	p.A149	0.997	85	0%	163	36.8%	37	0%	-	-	-	HMMPfam_CTP_transf_2,superfamily_SSF52374
PIGZ	80235	genome.wustl.edu	37	3	196674690	196674690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025163.2	-1	reviewed	p.R360W	0.000	45	0%	69	11.6%	1	0%	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_Glyco_transf_22
MFI2	4241	genome.wustl.edu	37	3	196735807	196735807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005929.4	-1	reviewed	p.V519M	0.996	13	0%	23	43.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
FYTTD1	84248	genome.wustl.edu	37	3	197501078	197501078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032288.6	+1	validated	p.R218H	1.000	123	0%	144	27.1%	52	0%	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	HMMPfam_FYTT
LMLN	89782	genome.wustl.edu	37	3	197702920	197702920	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136049.2	+1	reviewed	p.A123	1.000	80	0%	87	27.6%	2	50%	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
ZNF732	654254	genome.wustl.edu	37	4	289323	289323	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001137608.1	-1	provisional	e3-1	0.029	46	0%	40	25%	0	-	-	-	-	-
ZNF732	654254	genome.wustl.edu	37	4	289926	289926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001137608.1	-1	provisional	p.D8N	0.177	204	0%	228	24.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PIGG	54872	genome.wustl.edu	37	4	517495	517495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127178.1	+1	validated	p.A621V	0.000	66	0%	68	36.8%	23	0%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
PDE6B	5158	genome.wustl.edu	37	4	629740	629740	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000283.3	+1	reviewed	p.C231	0.993	40	0%	53	30.2%	0	-	-	-	-	superfamily_GAF domain-like
TMEM175	84286	genome.wustl.edu	37	4	947067	947067	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032326.2	+1	provisional	p.H184	1.000	16	0%	37	27%	37	0%	-	-	-	NULL
MAEA	10296	genome.wustl.edu	37	4	1326590	1326590	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000382947	+1	known	p.R168*	0.918	11	0%	12	41.7%	128	0%	-	-	-	NULL
CRIPAK	285464	genome.wustl.edu	37	4	1388904	1388904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175918.3	+1	validated	p.T202M	0.090	26	0%	31	35.5%	18	0%	probably_damaging(1)	-	-	HMMSmart_PostSET
WHSC2	7469	genome.wustl.edu	37	4	1985225	1985225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005663.3	-1	reviewed	p.P481S	1.000	34	0%	35	17.1%	80	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
HAUS3	79441	genome.wustl.edu	37	4	2242489	2242489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024511.5	-1	provisional	p.S62N	0.824	77	0%	128	31.2%	25	0%	benign(0.002)	tolerated(0.45)	neutral(0.012)	NULL
FAM193A	8603	genome.wustl.edu	37	4	2632848	2632848	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003704.3	+1	validated	p.G39	0.908	30	0%	50	26%	9	0%	-	-	-	NULL
TNIP2	79155	genome.wustl.edu	37	4	2749579	2749579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024309.3	-1	validated	p.V124I	0.000	42	0%	56	28.6%	35	0%	benign(0.29)	tolerated(0.58)	neutral(0.095)	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2829025	2829025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122681.1	+1	reviewed	p.P166L	0.002	31	0%	35	25.7%	53	0%	benign(0.139)	tolerated(0.21)	neutral(0.056)	NULL
ADD1	118	genome.wustl.edu	37	4	2896432	2896432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014189.2	+1	reviewed	p.H239Y	1.000	51	0%	62	40.3%	86	0%	possibly_damaging(0.836)	tolerated(0.25)	neutral(0.356)	HMMPfam_Aldolase_II,superfamily_Aldolase_II_N
ADD1	118	genome.wustl.edu	37	4	2916665	2916665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014189.2	+1	reviewed	p.V585I	1.000	68	0%	54	33.3%	125	0%	benign(0.031)	tolerated(0.13)	neutral(0.254)	NULL
NOP14	8602	genome.wustl.edu	37	4	2948228	2948228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003703.1	-1	validated	p.A516T	0.000	55	0%	111	27.9%	76	1.3%	benign(0.005)	tolerated(0.52)	neutral(0.009)	HMMPfam_Nop14
GRK4	2868	genome.wustl.edu	37	4	3005988	3005988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182982.2	+1	reviewed	p.D124Y	0.000	197	0%	237	17.7%	4	0%	benign(0.133)	deleterious(0.03)	neutral(0.376)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
HTT	3064	genome.wustl.edu	37	4	3101058	3101058	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002111.6	+1	reviewed	p.C135	1.000	73	0%	85	11.8%	5	0%	-	-	-	superfamily_ARM repeat
HTT	3064	genome.wustl.edu	37	4	3208619	3208619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002111.6	+1	reviewed	p.R1995M	1.000	41	0%	48	43.8%	13	0%	possibly_damaging(0.778)	deleterious(0.01)	deleterious(0.697)	NULL
LRPAP1	4043	genome.wustl.edu	37	4	3519827	3519827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002337.2	-1	validated	p.R229C	0.877	12	0.000	8	0.500	249	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Alpha-2-MRAP_C
CRMP1	1400	genome.wustl.edu	37	4	5823536	5823536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014809.1	-1	reviewed	p.R671H	1.000	21	4.8%	18	38.9%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPP2R2C	5522	genome.wustl.edu	37	4	6374291	6374291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020416.3	-1	reviewed	p.R195H	1.000	50	0%	66	39.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_subs_rcg
MAN2B2	23324	genome.wustl.edu	37	4	6580182	6580182	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000505907	+1	known	p.T115M	0.752	13	0%	16	31.2%	46	0%	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glycoside hydrolase/deacetylase
KIAA0232	9778	genome.wustl.edu	37	4	6826292	6826292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100590.1	+1	validated	p.P38S	1.000	122	0%	207	30%	8	0%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
PSAPL1	768239	genome.wustl.edu	37	4	7436325	7436325	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085382.1	-1	validated	p.T94	0.254	21	0%	16	43.8%	0	-	-	-	-	HMMPfam_SapB_1,HMMSmart_SapB,superfamily_Saposin_like
DRD5	1816	genome.wustl.edu	37	4	9784146	9784146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000798.4	+1	reviewed	p.W165R	1.000	33	0%	47	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HS3ST1	9957	genome.wustl.edu	37	4	11401265	11401265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005114.2	-1	reviewed	p.A122V	1.000	33	0%	32	12.5%	58	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
BOD1L	259282	genome.wustl.edu	37	4	13600911	13600911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_148894.2	-1	validated	p.D2538G	0.000	80	0%	114	21.9%	27	0%	possibly_damaging(0.718)	tolerated(0.64)	neutral(0.263)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13604639	13604639	+	Silent	SNP	C	C	T	rs182239378	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_148894.2	-1	validated	p.S1295	0.000	64	0%	123	33.3%	6	0%	-	-	-	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13616273	13616273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_148894.2	-1	validated	p.P241S	0.997	91	0%	112	35.7%	6	0%	benign(0.282)	deleterious(0.01)	deleterious(0.492)	superfamily_SSF81995
FBXL5	26234	genome.wustl.edu	37	4	15613888	15613888	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012161.2	-1	reviewed	e10+1	1.000	103	0%	142	29.6%	2	0%	-	-	-	-
FBXL5	26234	genome.wustl.edu	37	4	15627233	15627233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012161.2	-1	reviewed	p.H498Y	1.000	130	0%	215	30.2%	76	0%	benign(0.271)	tolerated(0.74)	neutral(0.031)	superfamily_RNI-like
TAPT1	202018	genome.wustl.edu	37	4	16189932	16189932	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000513782	-1	known	p.C57*	1.000	123	0%	149	33.6%	22	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_DUF747
GPR125	166647	genome.wustl.edu	37	4	22390441	22390441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145290.2	-1	validated	p.E951D	1.000	317	0%	357	28.3%	45	0%	probably_damaging(0.965)	tolerated(0.31)	neutral(0.434)	HMMPfam_7tm_2
DHX15	1665	genome.wustl.edu	37	4	24538677	24538677	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001358.2	-1	reviewed	p.Q636*	1.000	68	0%	68	38.2%	193	0%	-	-	-	NULL
PI4K2B	55300	genome.wustl.edu	37	4	25256832	25256832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018323.3	+1	validated	p.A190V	1.000	63	0%	96	13.5%	20	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_PI3_PI4_kinase
SLC34A2	10568	genome.wustl.edu	37	4	25678341	25678341	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006424.2	+1	reviewed	p.S681	0.000	45	0%	61	18%	18	0%	-	-	-	NULL
STIM2	57620	genome.wustl.edu	37	4	27010573	27010573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020860.3	+1	reviewed	p.G567*	0.999	247	0%	212	26.4%	20	0%	-	-	-	NULL
PCDH7	5099	genome.wustl.edu	37	4	30921913	30921913	+	Missense_Mutation	SNP	G	G	A	rs61748744	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032457.3	+1	reviewed	p.A1058T	1.000	95	0%	86	25.6%	3	0%	possibly_damaging(0.575)	tolerated(0.11)	deleterious(0.469)	NULL
PCDH7	5099	genome.wustl.edu	37	4	30921914	30921914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032457.3	+1	reviewed	p.A1058V	1.000	97	0%	84	34.5%	3	0%	possibly_damaging(0.575)	tolerated(0.1)	deleterious(0.483)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36166723	36166723	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015230.2	-1	reviewed	p.E662	1.000	139	0%	242	19%	2	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TLR10	81793	genome.wustl.edu	37	4	38775516	38775516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017388.1	-1	reviewed	p.D566Y	0.024	176	0%	234	26.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LRRCT,HMMSmart_LRRCT,superfamily_SSF52058
TLR1	7096	genome.wustl.edu	37	4	38799905	38799905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003263.3	-1	reviewed	p.G183D	0.411	104	0%	144	34.7%	0	-	benign(0.177)	deleterious(0)	neutral(0.461)	superfamily_L domain-like
TLR6	10333	genome.wustl.edu	37	4	38830313	38830313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006068.3	-1	validated	p.T261M	1.000	92	0%	140	12.9%	0	-	probably_damaging(0.997)	tolerated(0.19)	deleterious(0.516)	superfamily_SSF52058
FAM114A1	92689	genome.wustl.edu	37	4	38910317	38910317	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138389.2	+1	validated	p.T254	0.045	114	0%	170	17.6%	31	0%	-	-	-	HMMPfam_DUF719
DCAF4L1	285429	genome.wustl.edu	37	4	41983958	41983958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029955.3	+1	validated	p.R50H	0.950	100	0%	109	14.7%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_WD40 repeat-like
ATP8A1	10396	genome.wustl.edu	37	4	42581955	42581955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006095.2	-1	reviewed	p.R292Q	1.000	100	0%	91	31.9%	1	0%	possibly_damaging(0.727)	tolerated(0.07)	deleterious(0.584)	NULL
KCTD8	386617	genome.wustl.edu	37	4	44176840	44176840	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198353.2	-1	validated	p.W463*	1.000	101	0%	195	11.3%	0	-	-	-	-	NULL
GABRG1	2565	genome.wustl.edu	37	4	46060592	46060592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173536.3	-1	reviewed	p.V225I	1.000	127	0%	150	34%	0	-	possibly_damaging(0.492)	tolerated(0.08)	neutral(0.464)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ATP10D	57205	genome.wustl.edu	37	4	47527649	47527649	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020453.3	+1	validated	p.R256*	1.000	152	0%	140	25.7%	3	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
ATP10D	57205	genome.wustl.edu	37	4	47578951	47578951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020453.3	+1	validated	p.M1176I	0.101	327	0%	440	37.3%	6	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
TEC	7006	genome.wustl.edu	37	4	48140746	48140746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003215.2	-1	reviewed	p.R583Q	1.000	128	0%	165	11.5%	19	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LNX1	84708	genome.wustl.edu	37	4	54374352	54374352	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001126328.1	-1	reviewed	p.K141	1.000	101	0%	88	11.4%	30	0%	-	-	-	NULL
PDGFRA	5156	genome.wustl.edu	37	4	55138646	55138646	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006206.4	+1	reviewed	p.P441	0.822	70	1.4%	65	13.8%	3	0%	-	-	-	superfamily_Immunoglobulin
SRD5A3	79644	genome.wustl.edu	37	4	56236091	56236091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024592.3	+1	validated	p.V264I	0.717	223	0%	371	33.2%	82	0%	benign(0.081)	tolerated(0.31)	neutral(0.033)	HMMPfam_Steroid_dh
EXOC1	55763	genome.wustl.edu	37	4	56770577	56770577	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024924.1	+1	reviewed	p.R867	0.940	225	0%	251	35.1%	38	0%	-	-	-	HMMPfam_Sec3
KIAA1211	57482	genome.wustl.edu	37	4	57181299	57181299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020722.1	+1	validated	p.G544E	0.998	15	0%	16	50%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPAT	5471	genome.wustl.edu	37	4	57272694	57272694	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002703.3	-1	reviewed	p.G123	0.194	213	0%	260	31.2%	33	0%	-	-	-	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SRP72	6731	genome.wustl.edu	37	4	57356562	57356562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006947.3	+1	validated	p.R462W	0.980	151	0%	179	23.5%	120	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF48452
POLR2B	5431	genome.wustl.edu	37	4	57876570	57876570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000938.1	+1	reviewed	p.R483H	1.000	247	0%	298	32.6%	79	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_3,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
IGFBP7	3490	genome.wustl.edu	37	4	57898673	57898673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001553.1	-1	provisional	p.A250T	1.000	149	0%	179	36.9%	373	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TECRL	253017	genome.wustl.edu	37	4	65155475	65155475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010874.4	-1	validated	p.A262D	1.000	73	0%	101	22.8%	0	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
CENPC1	1060	genome.wustl.edu	37	4	68380247	68380247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001812.2	-1	reviewed	p.R330H	0.000	36	0%	50	24%	10	0%	benign(0.007)	tolerated(1)	-	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69188515	69188515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031732.2	-1	validated	p.R518Q	1.000	128	0%	102	12.7%	109	0.9%	unknown(0)	deleterious(0.03)	-	NULL
CABS1	85438	genome.wustl.edu	37	4	71201221	71201221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033122.3	+1	validated	p.E155D	0.002	193	0%	241	31.1%	0	-	benign(0.105)	tolerated(0.58)	neutral(0.013)	NULL
NPFFR2	10886	genome.wustl.edu	37	4	72897693	72897693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004885.2	+1	reviewed	p.K25N	0.000	62	0%	49	16.3%	0	-	benign(0.001)	-	-	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73149256	73149256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014243.1	-1	reviewed	p.V1072A	0.000	187	0%	197	33%	3	0%	benign(0)	tolerated(1)	-	NULL
ANKRD17	26057	genome.wustl.edu	37	4	73956902	73956902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032217.3	-1	reviewed	p.A2148V	0.991	352	0%	387	27.4%	58	0%	benign(0)	tolerated(0.92)	-	NULL
AFP	174	genome.wustl.edu	37	4	74313190	74313190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134.1	+1	reviewed	p.M285I	1.000	122	0%	107	39.3%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
USO1	8615	genome.wustl.edu	37	4	76692262	76692262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000264904	+1	known	p.A104V	1.000	41	0%	68	35.3%	57	0%	benign(0.005)	tolerated(0.36)	neutral(0.020)	superfamily_ARM repeat
USO1	8615	genome.wustl.edu	37	4	76695831	76695831	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003715.2	+1	reviewed	p.R147C	0.958	107	0%	114	25.4%	56	0%	-	-	-	NULL
USO1	8615	genome.wustl.edu	37	4	76703914	76703914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000264904	+1	known	p.G181D	1.000	66	0%	74	40.5%	39	0%	probably_damaging(0.965)	tolerated(0.1)	deleterious(0.694)	superfamily_ARM repeat
NAAA	27163	genome.wustl.edu	37	4	76842143	76842143	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000513045	-1	known	p.W71*	1.000	120	0%	149	25.5%	40	0%	benign(0.382)	tolerated(0.57)	neutral(0.128)	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77631335	77631335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020859.3	+1	validated	p.A117V	0.276	160	0%	244	30.3%	4	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ANXA3	306	genome.wustl.edu	37	4	79500234	79500234	+	Missense_Mutation	SNP	C	C	T	rs181568024	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005139.2	+1	reviewed	p.R53W	0.993	94	0%	126	37.3%	127	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
BMP2K	55589	genome.wustl.edu	37	4	79832535	79832535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198892.1	+1	reviewed	p.S945N	0.000	138	0%	167	35.9%	10	0%	unknown(0)	deleterious(0)	-	NULL
PAQR3	152559	genome.wustl.edu	37	4	79856324	79856324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040202.1	-1	validated	p.A100V	1.000	363	0%	588	35%	5	0%	possibly_damaging(0.95)	tolerated(0.08)	deleterious(0.694)	HMMPfam_HlyIII
GK2	2712	genome.wustl.edu	37	4	80329284	80329284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033214.2	-1	validated	p.R24H	0.995	95	0%	103	21.4%	0	-	possibly_damaging(0.673)	deleterious(0)	deleterious(0.683)	HMMPfam_FGGY_N,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80952816	80952816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145794.1	-1	reviewed	p.S276Y	0.891	56	0%	39	33.3%	7	0%	benign(0.001)	tolerated(0.88)	-	HMMPfam_Anth_Ig
FGF5	2250	genome.wustl.edu	37	4	81188135	81188135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004464.3	+1	reviewed	p.A53T	0.000	86	0%	94	13.8%	0	-	unknown(0)	tolerated(0.52)	-	NULL
PRKG2	5593	genome.wustl.edu	37	4	82088364	82088364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006259.1	-1	provisional	p.K288M	1.000	54	0%	26	26.9%	0	-	benign(0.289)	tolerated(0.07)	neutral(0.408)	HMMSmart_cNMP,superfamily_cNMP_binding
RASGEF1B	153020	genome.wustl.edu	37	4	82355802	82355802	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152545.1	-1	provisional	p.V397	1.000	47	0%	48	10.4%	5	0%	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF
SEC31A	22872	genome.wustl.edu	37	4	83793105	83793105	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077207.1	-1	reviewed	p.N258	1.000	90	0%	119	35.3%	95	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SEC31A	22872	genome.wustl.edu	37	4	83795850	83795850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077207.1	-1	reviewed	p.A185T	1.000	159	0%	194	42.3%	86	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LIN54	132660	genome.wustl.edu	37	4	83849323	83849323	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194282.2	-1	validated	p.R728*	1.000	111	0%	136	38.2%	16	0%	-	-	-	NULL
COQ2	27235	genome.wustl.edu	37	4	84188847	84188847	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015697.7	-1	reviewed	p.G294	1.000	29	0%	23	26.1%	30	0%	-	-	-	HMMPfam_UbiA
HPSE	10855	genome.wustl.edu	37	4	84234371	84234371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098540.1	-1	validated	p.A190V	0.996	196	0%	244	13.1%	1	0%	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMPfam_Glyco_hydro_79n,superfamily_(Trans)glycosidases
AGPAT9	84803	genome.wustl.edu	37	4	84509418	84509418	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032717.3	+1	validated	p.R204*	1.000	126	0%	112	15.2%	5	0%	-	-	-	NULL
CDS1	1040	genome.wustl.edu	37	4	85540646	85540646	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001263.3	+1	reviewed	p.I180	1.000	173	0%	195	30.3%	16	0%	-	-	-	HMMPfam_CTP_transf_1
WDFY3	23001	genome.wustl.edu	37	4	85600238	85600238	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014991.4	-1	reviewed	p.G3327	1.000	68	0%	53	18.9%	18	0%	-	-	-	superfamily_WD40 repeat-like
WDFY3	23001	genome.wustl.edu	37	4	85654536	85654536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014991.4	-1	reviewed	p.A2407V	0.949	393	0%	355	11.3%	9	0%	benign(0.051)	tolerated(0.18)	neutral(0.059)	superfamily_Cyclin-like
WDFY3	23001	genome.wustl.edu	37	4	85658516	85658516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014991.4	-1	reviewed	p.R2193H	1.000	80	0%	101	22.8%	9	0%	benign(0.081)	tolerated(0.17)	neutral(0.065)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85699781	85699781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014991.4	-1	reviewed	p.R1465C	1.000	411	0%	522	33.5%	8	0%	benign(0.181)	tolerated(0.12)	neutral(0.277)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85731296	85731296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014991.4	-1	reviewed	p.R697C	1.000	138	0%	192	18.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
MAPK10	5602	genome.wustl.edu	37	4	86985534	86985534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138982.2	-1	reviewed	p.A332V	1.000	124	0%	137	27.7%	11	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PTPN13	5783	genome.wustl.edu	37	4	87662971	87662971	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080685.2	+1	reviewed	e15+2	1.000	44	0%	41	34.1%	0	-	-	-	-	-
AFF1	4299	genome.wustl.edu	37	4	87967367	87967367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005935.2	+1	validated	p.R23C	0.998	504	0%	556	28.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AF-4
KLHL8	57563	genome.wustl.edu	37	4	88099724	88099724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020803.3	-1	validated	p.R334H	1.000	191	0%	164	41.5%	7	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DMP1	1758	genome.wustl.edu	37	4	88583402	88583402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004407.3	+1	reviewed	p.A158T	0.000	159	0%	136	24.3%	0	-	possibly_damaging(0.636)	tolerated(0.07)	deleterious(0.541)	HMMPfam_DMP1
IBSP	3381	genome.wustl.edu	37	4	88731868	88731868	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004967.3	+1	reviewed	p.T119	0.001	223	0%	256	14.8%	0	-	-	-	-	HMMPfam_BSP_II
MEPE	56955	genome.wustl.edu	37	4	88766560	88766560	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020203.3	+1	validated	p.I180	0.000	196	0%	299	29.8%	0	-	-	-	-	HMMPfam_Osteoregulin
HERC5	51191	genome.wustl.edu	37	4	89415363	89415363	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016323.2	+1	reviewed	p.G775	1.000	180	0%	197	28.4%	6	0%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
FAM13A	10144	genome.wustl.edu	37	4	89702372	89702372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014883.2	-1	validated	p.R468C	1.000	222	0%	296	37.2%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAP1GDS1	5910	genome.wustl.edu	37	4	99214581	99214581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100426.1	+1	validated	p.K10N	1.000	90	0%	117	10.3%	17	0%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
EIF4E	1977	genome.wustl.edu	37	4	99808246	99808246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130679.1	-1	validated	p.R128H	1.000	337	0%	314	14.3%	129	0%	benign(0.015)	tolerated(0.15)	neutral(0.241)	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
ADH6	130	genome.wustl.edu	37	4	100129878	100129878	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102470.1	-1	reviewed	p.T259S	1.000	679	0%	734	29.7%	0	-	possibly_damaging(0.571)	deleterious(0.02)	deleterious(0.579)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd
ADH6	130	genome.wustl.edu	37	4	100137350	100137350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102470.1	-1	reviewed	p.A30T	1.000	133	0%	143	10.5%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_GroES_like
DNAJB14	79982	genome.wustl.edu	37	4	100822214	100822214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031723.2	-1	validated	p.R371W	1.000	77	0%	117	26.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1977
SLC9B2	133308	genome.wustl.edu	37	4	103968248	103968248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178833.4	-1	validated	p.I283	1.000	106	0%	110	13.6%	4	0%	-	-	-	HMMPfam_Na_H_Exchanger
CENPE	1062	genome.wustl.edu	37	4	104066263	104066263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001813.2	-1	validated	p.A1601T	0.623	242	0%	211	33.2%	9	0%	benign(0.181)	tolerated(0.57)	neutral(0.022)	NULL
CENPE	1062	genome.wustl.edu	37	4	104117406	104117406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001813.2	-1	validated	p.R51H	1.000	84	0%	102	25.5%	7	0%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TACR3	6870	genome.wustl.edu	37	4	104512661	104512661	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001059.1	-1	reviewed	p.Y356	1.000	258	0%	194	12.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TBCK	93627	genome.wustl.edu	37	4	107092346	107092346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033115.3	-1	validated	p.A651V	1.000	257	0%	199	38.2%	29	0%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
PAPSS1	9061	genome.wustl.edu	37	4	108615003	108615003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005443.4	-1	validated	p.R112H	1.000	130	0%	198	11.6%	57	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APS_kinase,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL25A1	84570	genome.wustl.edu	37	4	109790273	109790273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198721.1	-1	validated	p.P352S	1.000	256	0%	249	26.5%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_Collagen
COL25A1	84570	genome.wustl.edu	37	4	109810879	109810879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198721.1	-1	validated	p.G306V	1.000	143	0%	142	12%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
COL25A1	84570	genome.wustl.edu	37	4	110222983	110222983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198721.1	-1	validated	p.A65T	0.997	157	0%	133	37.6%	0	-	unknown(0)	deleterious(0)	-	NULL
SEC24B	10427	genome.wustl.edu	37	4	110459719	110459719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006323.2	+1	reviewed	p.S1220N	0.206	123	0%	237	26.6%	50	0%	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_C-terminal gelsolin-like domain of Sec23/24
CFI	3426	genome.wustl.edu	37	4	110685721	110685721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000204.3	-1	reviewed	p.V152M	0.999	447	0%	455	27%	43	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
LRIT3	345193	genome.wustl.edu	37	4	110791603	110791603	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198506.2	+1	validated	p.C521	0.280	201	0.5%	225	35.6%	0	-	-	-	-	NULL
C4orf21	55345	genome.wustl.edu	37	4	113524704	113524704	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000505019	-1	known	p.T984	0.000	135	0%	181	28.7%	0	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114170930	114170930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001148.4	+1	reviewed	p.T301I	1.000	83	0%	100	10%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114199630	114199630	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001148.4	+1	reviewed	p.P599	0.950	126	0%	118	33.1%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114276464	114276464	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001148.4	+1	reviewed	p.S2230	1.000	223	0%	255	33.7%	0	-	-	-	-	NULL
ARSJ	79642	genome.wustl.edu	37	4	114823485	114823487	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024590.3	-1	validated	p.K582in_frame_del	0.004:0.269:0.362	-	-	-	-	-	-	-	-	-	NULL
NDST4	64579	genome.wustl.edu	37	4	115997751	115997751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022569.1	-1	provisional	p.E148K	1.000	196	0%	208	31.7%	0	-	benign(0.408)	deleterious(0.03)	deleterious(0.496)	NULL
METTL14	57721	genome.wustl.edu	37	4	119626970	119626970	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020961.2	+1	provisional	p.R354*	1.000	187	0.5%	240	37.1%	18	0%	-	-	-	HMMPfam_MT-A70
SEC24D	9871	genome.wustl.edu	37	4	119754819	119754819	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014822.2	-1	reviewed	p.P11	0.757	92	0%	161	33.5%	34	0%	-	-	-	NULL
PDE5A	8654	genome.wustl.edu	37	4	120528243	120528243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083.3	-1	reviewed	p.T121N	0.850	159	0%	221	33.9%	1	0%	benign(0.017)	tolerated(0.06)	neutral(0.323)	NULL
EXOSC9	5393	genome.wustl.edu	37	4	122725790	122725790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001034194.1	+1	validated	p.R133H	1.000	56	0%	71	29.6%	108	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNase_PH,superfamily_Ribosomal_S5_D2-typ_fold
CCNA2	890	genome.wustl.edu	37	4	122738807	122738807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001237.3	-1	validated	p.T429A	1.000	178	0%	165	29.7%	66	0%	benign(0.037)	tolerated(0.09)	neutral(0.298)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
KIAA1109	84162	genome.wustl.edu	37	4	123094204	123094204	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015312.3	+1	reviewed	p.S37	1.000	517	0%	545	26.2%	2	0%	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123145760	123145760	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000424425	+1	known	p.R739*	1.000	132	0%	167	29.3%	2	0%	-	-	-	NULL
SPATA5	166378	genome.wustl.edu	37	4	123868550	123868550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145207.2	+1	validated	p.P541S	0.969	212	0%	236	25%	8	0%	possibly_damaging(0.512)	tolerated(0.06)	deleterious(0.494)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125590832	125590832	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020337.2	-1	validated	p.T1200	0.558	347	0%	418	32.8%	28	0%	-	-	-	NULL
ANKRD50	57182	genome.wustl.edu	37	4	125592430	125592430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020337.2	-1	validated	p.A668T	1.000	176	0%	253	27.7%	17	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126239422	126239422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024582.4	+1	validated	p.R619H	1.000	111	0%	59	39%	1	0%	benign(0.012)	tolerated(0.1)	neutral(0.287)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126240918	126240918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024582.4	+1	validated	p.F1118L	0.993	264	0%	194	26.3%	4	0%	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126328259	126328259	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024582.4	+1	validated	p.P1844	0.012	178	0.6%	193	32.6%	2	0%	-	-	-	superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126400915	126400915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024582.4	+1	validated	p.A4165T	0.995	67	0%	84	16.7%	3	0%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
LARP1B	55132	genome.wustl.edu	37	4	129120747	129120747	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018078.2	+1	reviewed	p.C719	1.000	120	0%	162	29%	10	0%	-	-	-	HMMSmart_SM00684
PHF17	79960	genome.wustl.edu	37	4	129792810	129792810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199320.2	+1	validated	p.R641H	0.924	219	0%	213	27.2%	20	0%	benign(0.08)	deleterious(0.01)	neutral(0.411)	NULL
SCLT1	132320	genome.wustl.edu	37	4	129809878	129809878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144643.2	-1	validated	p.R654C	0.997	230	0%	195	14.9%	22	0%	unknown(0)	deleterious(0.05)	-	NULL
PCDH10	57575	genome.wustl.edu	37	4	134071343	134071343	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032961.1	+1	reviewed	p.V16	1.000	146	0%	136	28.7%	0	-	-	-	-	NULL
PCDH10	57575	genome.wustl.edu	37	4	134072952	134072952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032961.1	+1	reviewed	p.A553T	0.997	63	0%	59	15.3%	0	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134073054	134073054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032961.1	+1	reviewed	p.R587C	1.000	36	0%	30	23.3%	0	-	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134073139	134073139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032961.1	+1	reviewed	p.R615Q	0.996	35	0%	32	12.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH18	54510	genome.wustl.edu	37	4	138450773	138450773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019035.3	-1	reviewed	p.A824T	1.000	80	0%	71	29.6%	13	0%	possibly_damaging(0.811)	tolerated(0.07)	deleterious(0.625)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138452415	138452415	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019035.3	-1	reviewed	p.G276	1.000	183	0%	151	34.4%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ELF2	1998	genome.wustl.edu	37	4	139983037	139983037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201999.1	-1	validated	p.T251I	1.000	165	0%	263	30.4%	35	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785
NAA15	80155	genome.wustl.edu	37	4	140270695	140270695	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_057175.3	+1	validated	p.N257	1.000	148	0%	166	25.9%	20	0%	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
NAA15	80155	genome.wustl.edu	37	4	140275181	140275181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_057175.3	+1	validated	p.V339A	1.000	262	0%	263	20.2%	24	0%	possibly_damaging(0.653)	tolerated(0.49)	neutral(0.240)	superfamily_TPR-like
CLGN	1047	genome.wustl.edu	37	4	141317004	141317004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130675.1	-1	reviewed	p.R373K	0.896	139	0%	169	34.9%	3	0%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_Calreticulin,superfamily_P-domain of calnexin/calreticulin
TBC1D9	23158	genome.wustl.edu	37	4	141555254	141555254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015130.2	-1	validated	p.R865H	1.000	55	0%	76	34.2%	25	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_EF-hand
INPP4B	8821	genome.wustl.edu	37	4	143159105	143159105	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001101669.1	-1	reviewed	p.R250*	0.969	115	0%	130	10%	0	-	-	-	-	NULL
OTUD4	54726	genome.wustl.edu	37	4	146059133	146059133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102653.1	-1	reviewed	p.P867S	0.823	134	0%	133	15.8%	12	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
DCLK2	166614	genome.wustl.edu	37	4	151120185	151120185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000302176	+1	known	p.R323W	1.000	31	0%	31	41.9%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
DCLK2	166614	genome.wustl.edu	37	4	151153573	151153573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040260.2	+1	validated	p.A462T	0.002	239	0%	419	33.9%	2	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DCLK2	166614	genome.wustl.edu	37	4	151153944	151153944	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040260.2	+1	validated	p.S510	1.000	236	0%	435	27.6%	4	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRBA	987	genome.wustl.edu	37	4	151392889	151392889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006726.2	-1	validated	p.R2196H	1.000	199	0%	237	12.7%	45	0%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	superfamily_BEACH domain
SH3D19	152503	genome.wustl.edu	37	4	152049327	152049327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009555.3	-1	validated	p.C718Y	0.998	53	0%	57	29.8%	23	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PET112	5188	genome.wustl.edu	37	4	152638050	152638050	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004564.2	-1	validated	p.T206	0.023	121	0%	225	22.2%	15	0%	-	-	-	HMMPfam_GatB_N
TIGD4	201798	genome.wustl.edu	37	4	153691228	153691228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145720.2	-1	reviewed	p.C310Y	0.938	123	0%	259	27%	0	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	HMMPfam_DDE
ARFIP1	27236	genome.wustl.edu	37	4	153809415	153809415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025595.1	+1	validated	p.R308C	1.000	70	0%	137	31.4%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arfaptin
TLR2	7097	genome.wustl.edu	37	4	154624154	154624154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003264.3	+1	reviewed	p.R32H	0.000	173	0%	165	32.1%	2	0%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_SSF52058
TLR2	7097	genome.wustl.edu	37	4	154625003	154625003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003264.3	+1	reviewed	p.R315Q	0.035	210	0%	254	32.7%	6	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_SSF52058
TLR2	7097	genome.wustl.edu	37	4	154625598	154625598	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003264.3	+1	reviewed	p.T513	0.000	225	0%	226	39.8%	17	0%	-	-	-	superfamily_SSF52058
DCHS2	54798	genome.wustl.edu	37	4	155287551	155287551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017639.3	-1	validated	p.D169Y	1.000	37	0%	56	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
GUCY1A3	2982	genome.wustl.edu	37	4	156632269	156632269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000856.4	+1	validated	p.P318S	1.000	134	0%	157	35.7%	0	-	benign(0.002)	tolerated(0.47)	neutral(0.011)	HMMPfam_HNOBA
PDGFC	56034	genome.wustl.edu	37	4	157688957	157688957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016205.1	-1	reviewed	p.V297I	0.996	206	0%	168	13.7%	43	0%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
GLRB	2743	genome.wustl.edu	37	4	157999236	157999236	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000824.4	+1	reviewed	p.A20	0.979	144	0%	248	34.3%	5	0%	-	-	-	NULL
GLRB	2743	genome.wustl.edu	37	4	158060031	158060031	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000824.4	+1	reviewed	p.A227	1.000	130	0%	143	26.6%	13	0%	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GLRB	2743	genome.wustl.edu	37	4	158074008	158074008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000824.4	+1	reviewed	p.A348V	1.000	271	0%	298	32.9%	17	0%	benign(0.023)	deleterious(0)	neutral(0.446)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
RXFP1	59350	genome.wustl.edu	37	4	159566233	159566233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021634.2	+1	provisional	p.R430*	1.000	113	0%	128	18%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FNIP2	57600	genome.wustl.edu	37	4	159789962	159789962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020840.1	+1	validated	p.A725V	0.001	170	0%	171	36.3%	9	0%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
FSTL5	56884	genome.wustl.edu	37	4	162307256	162307256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020116.3	-1	validated	p.E729D	0.255	130	0%	153	32%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	superfamily_Amine_DH_B_like
NPY1R	4886	genome.wustl.edu	37	4	164247268	164247268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000909.4	-1	validated	p.G147W	1.000	223	0%	303	12.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MARCH1	55016	genome.wustl.edu	37	4	164534496	164534496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017923.3	-1	validated	p.S54Y	1.000	157	0%	137	28.5%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ANP32C	23520	genome.wustl.edu	37	4	165118286	165118288	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012403.1	-1	reviewed	p.E193in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TRIM60	166655	genome.wustl.edu	37	4	165962616	165962616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152620.2	+1	reviewed	p.C464*	0.000	61	0%	99	16.2%	0	-	-	-	-	HMMPfam_SPRY
KLHL2	11275	genome.wustl.edu	37	4	166220753	166220753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007246.3	+1	validated	p.R289H	1.000	219	0%	216	32.4%	20	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Gal_oxid_central
DDX60	55601	genome.wustl.edu	37	4	169183925	169183925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017631.5	-1	validated	p.G1018E	1.000	201	0%	225	18.7%	8	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60	55601	genome.wustl.edu	37	4	169215038	169215038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017631.5	-1	validated	p.R261H	0.103	236	0%	256	33.2%	4	0%	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	NULL
PALLD	23022	genome.wustl.edu	37	4	169835155	169835155	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016081.3	+1	reviewed	p.G883	0.997	95	0%	108	33.3%	78	0%	-	-	-	NULL
NEK1	4750	genome.wustl.edu	37	4	170321765	170321765	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012224.1	-1	validated	p.C1179	0.991	40	2.5%	53	35.8%	14	0%	-	-	-	NULL
FBXO8	26269	genome.wustl.edu	37	4	175158640	175158640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012180.2	-1	reviewed	p.A295T	1.000	129	0%	161	36.6%	21	0%	probably_damaging(0.986)	tolerated(0.14)	deleterious(0.684)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
WDR17	116966	genome.wustl.edu	37	4	177098634	177098634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170710.4	+1	reviewed	p.D1226E	0.000	125	0%	169	24.9%	0	-	benign(0.001)	tolerated(1)	-	NULL
NEIL3	55247	genome.wustl.edu	37	4	178281689	178281689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018248.2	+1	validated	p.R498H	0.000	163	0%	178	23.6%	12	0%	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
AGA	175	genome.wustl.edu	37	4	178361513	178361513	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000027.3	-1	reviewed	p.E65	0.997	157	0%	170	25.3%	35	0%	-	-	-	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
AGA	175	genome.wustl.edu	37	4	178363461	178363461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000027.3	-1	reviewed	p.C23*	0.034	22	0%	19	31.6%	39	0%	-	-	-	HMMPfam_Asparaginase_2
ENSG00000231171	0	genome.wustl.edu	37	4	178897011	178897011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000431174	+1	known	p.G72R	0.000	211	0%	194	22.7%	0	-	unknown(0)	-	-	NULL
ODZ3	55714	genome.wustl.edu	37	4	183675710	183675710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080477.1	+1	provisional	p.A1397V	1.000	51	0%	53	28.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ConA_like_lec_gl,superfamily_SSF101898,superfamily_SSF63829
ODZ3	55714	genome.wustl.edu	37	4	183676223	183676223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080477.1	+1	provisional	p.R1568Q	1.000	82	0%	94	27.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_RHS_repeat,superfamily_ConA_like_lec_gl,superfamily_SSF63829
ODZ3	55714	genome.wustl.edu	37	4	183713936	183713936	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080477.1	+1	provisional	p.T2037	0.000	181	0%	176	33%	0	-	-	-	-	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184596384	184596384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021942.4	+1	validated	p.A243V	1.000	32	0%	63	30.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC391722	391722	genome.wustl.edu	37	4	185220586	185220586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_373042.2	-1	model	p.A277V	0.957	220	0%	231	11.3%	1	0%	-	-	-	superfamily_EF-hand
KIAA1430	57587	genome.wustl.edu	37	4	186084022	186084022	+	Missense_Mutation	SNP	G	G	A	rs192418727	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020827.1	-1	validated	p.A510V	0.000	46	0%	41	39%	27	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
UFSP2	55325	genome.wustl.edu	37	4	186329183	186329183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018359.3	-1	validated	p.T343I	0.975	67	0%	127	31.5%	59	0%	benign(0.275)	deleterious(0.01)	neutral(0.435)	HMMPfam_Peptidase_C78
UFSP2	55325	genome.wustl.edu	37	4	186339798	186339798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018359.3	-1	validated	p.T70I	0.988	155	0%	218	27.5%	28	0%	benign(0.395)	tolerated(0.19)	neutral(0.176)	NULL
PDLIM3	27295	genome.wustl.edu	37	4	186446224	186446224	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014476.3	-1	reviewed	p.A65	0.746	128	0%	143	40.6%	2	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SORBS2	8470	genome.wustl.edu	37	4	186510865	186510865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021069.4	-1	reviewed	p.V1070G	1.000	203	0%	188	30.3%	100	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SORBS2	8470	genome.wustl.edu	37	4	186567882	186567882	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000438278	-1	known	p.A152T	1.000	192	0%	200	13%	57	0%	-	-	-	NULL
F11	2160	genome.wustl.edu	37	4	187207630	187207630	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000128.3	+1	reviewed	p.C514	1.000	296	0.3%	313	16%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FAT1	2195	genome.wustl.edu	37	4	187524145	187524145	+	Silent	SNP	C	C	T	rs183715661	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005245.3	-1	reviewed	p.P3798	0.121	166	0%	116	31%	49	0%	-	-	-	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
FAT1	2195	genome.wustl.edu	37	4	187524687	187524687	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005245.3	-1	reviewed	p.R3665*	1.000	61	0%	45	42.2%	44	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
FAT1	2195	genome.wustl.edu	37	4	187532630	187532630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005245.3	-1	reviewed	p.A3255S	0.997	202	0%	161	12.4%	53	0%	benign(0.027)	tolerated(0.19)	neutral(0.051)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187541886	187541886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005245.3	-1	reviewed	p.V1952I	0.066	259	0%	215	13.5%	14	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
ZFP42	132625	genome.wustl.edu	37	4	188924185	188924185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174900.3	+1	validated	p.C75Y	0.585	97	0%	117	23.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ZFP42	132625	genome.wustl.edu	37	4	188924753	188924753	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174900.3	+1	validated	p.T264	0.212	61	0%	106	32.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TUBB7P	56604	genome.wustl.edu	37	4	190905500	190905500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020040.3	-1	validated	p.A63T	1.000	10	0%	11	63.6%	0	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PLEKHG4B	153478	genome.wustl.edu	37	5	171231	171231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052909.3	+1	validated	p.G912D	1.000	19	0%	22	27.3%	20	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SDHA	6389	genome.wustl.edu	37	5	226018	226018	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004168.2	+1	reviewed	p.P159	0.152	77	0%	90	27.8%	67	0%	-	-	-	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
AHRR	57491	genome.wustl.edu	37	5	353898	353898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020731.3	+1	reviewed	p.R43H	1.000	9	0.000	15	0.400	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353
SLC9A3	6550	genome.wustl.edu	37	5	476789	476789	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004174.2	-1	validated	e12-2	0.997	7	0.000	8	0.750	3	0%	-	-	-	-
CEP72	55722	genome.wustl.edu	37	5	653238	653238	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018140.3	+1	reviewed	p.S638	0.000	45	0%	20	40%	19	0%	-	-	-	NULL
BRD9	65980	genome.wustl.edu	37	5	865642	865642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023924.4	-1	validated	p.T431M	0.999	75	0%	57	14%	58	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5306619	5306619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139056.2	+1	reviewed	p.C1063*	1.000	158	0%	167	28.1%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
KIAA0947	23379	genome.wustl.edu	37	5	5457827	5457827	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015325.1	+1	validated	p.P358	0.000	314	0%	382	33.5%	11	0%	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464462	5464462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015325.1	+1	validated	p.F1672S	0.000	356	0%	340	11.5%	15	0%	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464701	5464701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015325.1	+1	validated	p.L1752F	1.000	49	0%	61	42.6%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5489382	5489382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015325.1	+1	validated	p.P2247L	0.488	37	0%	38	31.6%	41	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PAPD7	11044	genome.wustl.edu	37	5	6746426	6746426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006999.4	+1	reviewed	p.T199S	1.000	131	0%	178	30.9%	18	0%	probably_damaging(0.968)	tolerated(0.08)	deleterious(0.710)	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain
ADCY2	108	genome.wustl.edu	37	5	7520914	7520914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020546.2	+1	reviewed	p.A158T	1.000	187	0%	141	27.7%	3	0%	probably_damaging(0.953)	tolerated(0.13)	deleterious(0.649)	NULL
ADCY2	108	genome.wustl.edu	37	5	7773136	7773136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020546.2	+1	reviewed	p.A769V	0.997	136	0%	152	33.6%	3	0%	benign(0.043)	tolerated(0.45)	neutral(0.015)	NULL
FASTKD3	79072	genome.wustl.edu	37	5	7867438	7867438	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024091.2	-1	validated	p.P253	0.000	132	0%	204	16.2%	6	0%	-	-	-	NULL
TAS2R1	50834	genome.wustl.edu	37	5	9629844	9629844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019599.2	-1	reviewed	p.V101I	0.062	87	0%	97	35.1%	1	0%	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	HMMPfam_TAS2R,superfamily_SSF81321
CCT5	22948	genome.wustl.edu	37	5	10256221	10256221	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012073.3	+1	reviewed	p.T162	0.002	56	0%	70	20%	548	0.1%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
CCT5	22948	genome.wustl.edu	37	5	10258373	10258373	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012073.3	+1	reviewed	p.G227	0.201	73	0%	94	20.2%	444	0%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CCT5	22948	genome.wustl.edu	37	5	10261739	10261739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012073.3	+1	reviewed	p.G354D	1.000	411	0%	499	32.5%	597	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CMBL	134147	genome.wustl.edu	37	5	10290713	10290713	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138809.3	-1	validated	p.W54*	1.000	135	0%	131	17.6%	60	0%	-	-	-	HMMPfam_DLH,superfamily_SSF53474
ROPN1L	83853	genome.wustl.edu	37	5	10450212	10450212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031916.3	+1	reviewed	p.S135N	1.000	221	0%	218	30.3%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13901521	13901521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001369.2	-1	reviewed	p.R631H	1.000	44	0%	50	42%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N1
TRIO	7204	genome.wustl.edu	37	5	14359641	14359641	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007118.2	+1	validated	e13+1	1.000	62	0%	49	40.8%	0	-	-	-	-	-
ZNF622	90441	genome.wustl.edu	37	5	16463721	16463721	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033414.2	-1	provisional	p.T252	0.321	396	0.3%	453	29.6%	108	0%	-	-	-	HMMSmart_ZnF_C2H2
MYO10	4651	genome.wustl.edu	37	5	16670650	16670650	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012334.2	-1	validated	p.T1956	0.231	59	0%	65	30.8%	101	0%	-	-	-	HMMPfam_FERM_M,HMMSmart_B41
MYO10	4651	genome.wustl.edu	37	5	16685880	16685880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012334.2	-1	validated	p.M1319I	1.000	10	0%	12	41.7%	42	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_SSF50729
CDH10	1008	genome.wustl.edu	37	5	24535872	24535872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006727.2	-1	reviewed	p.A196T	1.000	79	0%	96	40.6%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH6	1004	genome.wustl.edu	37	5	31297424	31297424	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004932.2	+1	reviewed	p.T184	0.012	183	0%	174	27%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DROSHA	29102	genome.wustl.edu	37	5	31521318	31521318	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013235.4	-1	validated	p.R287*	1.000	341	0%	316	30.7%	33	0%	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	31983427	31983427	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178140.2	+1	reviewed	p.R215*	0.998	167	0%	159	26.4%	0	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32074689	32074689	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178140.2	+1	reviewed	p.V1159	0.605	32	0%	51	41.2%	0	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32088698	32088698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178140.2	+1	reviewed	p.A1715V	0.000	122	0%	140	37.9%	0	-	benign(0.244)	deleterious(0)	deleterious(0.469)	NULL
TARS	6897	genome.wustl.edu	37	5	33467707	33467707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152295.3	+1	reviewed	p.R689H	1.000	134	0%	122	29.5%	211	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS
C1QTNF3	114899	genome.wustl.edu	37	5	34020768	34020768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181435.4	-1	validated	p.R294*	0.988	158	0.6%	179	12.8%	8	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
EGFLAM	133584	genome.wustl.edu	37	5	38448428	38448428	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152403.2	+1	validated	p.P830	0.031	192	0%	217	26.7%	5	0%	-	-	-	superfamily_ConA_like_lec_gl
DAB2	1601	genome.wustl.edu	37	5	39377331	39377331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001343.2	-1	validated	p.V520I	0.993	106	0%	123	28.5%	3	0%	possibly_damaging(0.947)	tolerated(0.14)	deleterious(0.640)	PatternScan_PFKB_KINASES_1
C7	730	genome.wustl.edu	37	5	40959556	40959556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000587.2	+1	reviewed	p.V499F	0.835	49	0%	37	16.2%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_TSP1
C6	729	genome.wustl.edu	37	5	41161934	41161934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000065.2	-1	reviewed	p.S440F	1.000	186	0%	196	32.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MACPF,HMMSmart_MACPF
OXCT1	5019	genome.wustl.edu	37	5	41739521	41739521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000436.3	-1	reviewed	p.V498I	1.000	161	0%	198	24.7%	121	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_CoA_trans,superfamily_SSF100950
OXCT1	5019	genome.wustl.edu	37	5	41840553	41840553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000436.3	-1	reviewed	p.E244D	1.000	397	0%	364	11%	68	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CoA_trans,superfamily_SSF100950
C5orf51	285636	genome.wustl.edu	37	5	41912263	41912263	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175921.4	+1	validated	p.D193	1.000	256	0%	320	24.4%	9	0%	-	-	-	NULL
GHR	2690	genome.wustl.edu	37	5	42719441	42719441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000163.2	+1	reviewed	p.A611V	0.972	147	0%	115	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCL28	56477	genome.wustl.edu	37	5	43388494	43388494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_148672.2	-1	reviewed	p.R50H	0.963	188	0%	177	33.3%	42	0%	benign(0.015)	tolerated(0.32)	neutral(0.025)	PatternScan_SMALL_CYTOKINES_CC,superfamily_Interleukin 8-like chemokines
PAIP1	10605	genome.wustl.edu	37	5	43535057	43535057	+	Missense_Mutation	SNP	C	C	T	rs75094696		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006451.4	-1	reviewed	p.M365I	1.000	99	0%	160	31.2%	301	0%	benign(0.005)	tolerated(0.22)	neutral(0.042)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
PAIP1	10605	genome.wustl.edu	37	5	43543181	43543181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006451.4	-1	reviewed	p.R220P	1.000	77	0%	200	29.5%	186	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
MRPS30	10884	genome.wustl.edu	37	5	44815150	44815150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016640.3	+1	reviewed	p.R389H	1.000	164	0%	253	25.7%	87	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_PDCD9
HCN1	348980	genome.wustl.edu	37	5	45262182	45262182	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021072.2	-1	validated	p.R838	0.949	60	0%	36	33.3%	0	-	-	-	-	NULL
HCN1	348980	genome.wustl.edu	37	5	45303755	45303755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021072.2	-1	validated	p.V522I	1.000	150	0%	163	35%	0	-	benign(0.087)	tolerated(0.44)	neutral(0.019)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
HCN1	348980	genome.wustl.edu	37	5	45303857	45303857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021072.2	-1	validated	p.L488M	1.000	192	0%	224	10.7%	0	-	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	HMMSmart_cNMP,superfamily_cNMP_binding
PARP8	79668	genome.wustl.edu	37	5	50046022	50046022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024615.3	+1	validated	p.D62N	1.000	117	0%	165	30.9%	15	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
PARP8	79668	genome.wustl.edu	37	5	50090848	50090848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024615.3	+1	validated	p.R342H	1.000	127	0%	127	37.8%	30	0%	benign(0.01)	tolerated(0.44)	neutral(0.013)	NULL
ITGA1	3672	genome.wustl.edu	37	5	52183684	52183684	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181501.1	+1	reviewed	p.G271*	1.000	184	0%	209	30.6%	7	0%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ITGA2	3673	genome.wustl.edu	37	5	52367829	52367829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002203.3	+1	reviewed	p.G766D	0.996	90	0%	76	26.3%	0	-	benign(0.282)	tolerated(0.83)	neutral(0.087)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ARL15	54622	genome.wustl.edu	37	5	53409210	53409210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019087.2	-1	validated	p.R95H	1.000	132	0%	94	14.9%	11	0%	benign(0.276)	tolerated(1)	neutral(0.029)	HMMPfam_Arf,superfamily_SSF52540
GZMK	3003	genome.wustl.edu	37	5	54327274	54327274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002104.2	+1	reviewed	p.C149Y	1.000	172	0%	147	32.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CDC20B	166979	genome.wustl.edu	37	5	54420677	54420677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152623.2	-1	validated	p.A390V	0.000	105	0%	90	41.1%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	superfamily_WD40_like
IL6ST	3572	genome.wustl.edu	37	5	55237255	55237255	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002184.2	-1	reviewed	p.G804	0.000	179	0%	206	14.1%	15	0%	-	-	-	NULL
ANKRD55	79722	genome.wustl.edu	37	5	55407008	55407008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024669.2	-1	validated	p.R523W	0.003	193	0%	240	30%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56167786	56167786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005921.1	+1	validated	p.L451F	1.000	200	0%	213	28.6%	15	0%	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	HMMSmart_RING,superfamily_SSF57850
MAP3K1	4214	genome.wustl.edu	37	5	56179357	56179357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005921.1	+1	validated	p.P1224S	1.000	186	0%	169	32.5%	26	0%	benign(0.061)	deleterious(0)	neutral(0.449)	NULL
ACTBL2	345651	genome.wustl.edu	37	5	56777709	56777709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017992.2	-1	validated	p.H276N	1.000	91	0%	130	30%	0	-	benign(0.033)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTBL2	345651	genome.wustl.edu	37	5	56778214	56778214	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017992.2	-1	validated	p.T107	0.097	88	0%	102	12.7%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,superfamily_Actin-like ATPase domain
ELOVL7	79993	genome.wustl.edu	37	5	60067776	60067776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001104558.1	-1	validated	p.T70M	0.928	99	0%	133	15%	4	0%	possibly_damaging(0.768)	tolerated(0.14)	deleterious(0.534)	HMMPfam_ELO
DIMT1	27292	genome.wustl.edu	37	5	61694647	61694647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014473.2	-1	validated	p.T101M	1.000	74	0%	127	31.5%	25	0%	possibly_damaging(0.462)	deleterious(0.02)	deleterious(0.534)	HMMPfam_RrnaAD,HMMSmart_rADc,superfamily_SSF53335
HTR1A	3350	genome.wustl.edu	37	5	63256974	63256974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000524.2	-1	validated	p.K191N	0.999	180	0%	133	25.6%	0	-	benign(0.284)	tolerated(0.12)	neutral(0.348)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MAST4	375449	genome.wustl.edu	37	5	66459109	66459109	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015183.2	+1	validated	p.R1179*	0.975	114	0%	102	26.5%	4	0%	-	-	-	NULL
MAST4	375449	genome.wustl.edu	37	5	66459497	66459497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015183.2	+1	validated	p.P1308L	0.974	12	0%	10	60%	0	-	possibly_damaging(0.717)	deleterious(0.01)	deleterious(0.665)	NULL
MAST4	375449	genome.wustl.edu	37	5	66460560	66460560	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000443808	+1	known	p.R908*	0.004	144	0%	89	36%	4	0%	-	-	-	NULL
MAST4	375449	genome.wustl.edu	37	5	66461236	66461236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015183.2	+1	validated	p.R1888C	0.000	62	0%	53	32.1%	3	0%	benign(0.164)	deleterious(0)	neutral(0.460)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591135	67591136	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181523.1	+1	reviewed	p.D578fs	0.016:0.975	-	-	-	-	-	-	-	-	-	NULL
CCNB1	891	genome.wustl.edu	37	5	68470918	68470918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031966.2	+1	reviewed	p.R307Q	0.994	203	0%	201	38.8%	403	0%	benign(0.051)	tolerated(0.06)	neutral(0.326)	HMMPfam_Cyclin_C,HMMSmart_CYCLIN,superfamily_Cyclin_like
OCLN	100506658	genome.wustl.edu	37	5	70388908	70388908	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000515515	-1	known	p.R13	0.520	236	0%	340	22.9%	20	0%	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70754605	70754605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018429.2	+1	reviewed	p.P138S	1.000	231	0%	282	12.8%	4	0%	possibly_damaging(0.901)	tolerated(0.75)	neutral(0.358)	NULL
BDP1	55814	genome.wustl.edu	37	5	70757754	70757754	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018429.2	+1	reviewed	e3+1	1.000	162	0%	189	30.2%	0	-	-	-	-	-
BDP1	55814	genome.wustl.edu	37	5	70782320	70782320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018429.2	+1	reviewed	p.R360H	0.998	162	0%	198	23.7%	5	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71493331	71493331	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005909.3	+1	validated	p.P1383	0.360	287	0%	371	28.6%	12	0%	-	-	-	NULL
TNPO1	3842	genome.wustl.edu	37	5	72192330	72192330	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002270.3	+1	reviewed	p.S731fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
UTP15	84135	genome.wustl.edu	37	5	72864260	72864260	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032175.2	+1	validated	p.R67	1.000	229	0%	275	22.5%	11	0%	-	-	-	superfamily_WD40 repeat-like
COL4A3BP	10087	genome.wustl.edu	37	5	74675210	74675210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508809	-1	known	p.R114C	0.961	80	0%	69	37.7%	41	0%	-	-	-	HMMPfam_START,superfamily_Bet v1-like
POC5	134359	genome.wustl.edu	37	5	74981201	74981201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099271.1	-1	validated	p.T413I	0.000	86	0%	77	29.9%	30	0%	benign(0.164)	tolerated(0.19)	neutral(0.065)	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75973110	75973110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006633.2	+1	validated	p.D1199N	1.000	119	0%	121	40.5%	11	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
PDE8B	8622	genome.wustl.edu	37	5	76621449	76621449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003719.2	+1	validated	p.A162D	1.000	224	0%	225	12.4%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Response_reg
JMY	133746	genome.wustl.edu	37	5	78573880	78573880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152405.4	+1	validated	p.A394T	1.000	161	0%	189	25.9%	5	0%	possibly_damaging(0.719)	deleterious(0)	deleterious(0.705)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79025329	79025329	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153610.3	+1	validated	p.T247	0.928	324	0%	492	11%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033011	79033011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153610.3	+1	validated	p.P2808L	0.001	177	0%	212	39.2%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79034175	79034175	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153610.3	+1	validated	p.L3196R	1.000	214	0%	257	17.1%	4	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ENSG00000244801	0	genome.wustl.edu	37	5	79286384	79286384	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000499230	+1	novel	NULL	0.000	15	0%	23	30.4%	0	-	-	-	-	-
THBS4	7060	genome.wustl.edu	37	5	79372769	79372769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003248.4	+1	reviewed	p.E662K	1.000	160	0.6%	124	34.7%	322	0%	probably_damaging(0.979)	tolerated(0.14)	deleterious(0.671)	HMMPfam_TSP_3,superfamily_SSF103647
THBS4	7060	genome.wustl.edu	37	5	79373936	79373936	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003248.4	+1	reviewed	p.D717	0.857	19	0%	23	43.5%	300	0%	-	-	-	HMMPfam_TSP_3,superfamily_SSF103647
FAM151B	167555	genome.wustl.edu	37	5	79797673	79797673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_205548.1	+1	predicted	p.G30S	1.000	383	0%	531	36.7%	0	-	probably_damaging(0.989)	tolerated(0.27)	deleterious(0.473)	HMMPfam_DUF2181
CKMT2	1160	genome.wustl.edu	37	5	80559317	80559317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099735.1	+1	reviewed	p.R341H	1.000	180	0%	175	14.3%	10	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
ZCCHC9	84240	genome.wustl.edu	37	5	80600791	80600791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001131035.1	+1	validated	p.V72A	1.000	203	0%	254	12.6%	24	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
RPS23	6228	genome.wustl.edu	37	5	81572316	81572316	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025.4	-1	reviewed	p.P62	0.974	104	0%	134	17.2%	6410	0.4%	-	-	-	HMMPfam_Ribosomal_S12,PatternScan_RIBOSOMAL_S12,superfamily_Nucleic acid-binding proteins
VCAN	1462	genome.wustl.edu	37	5	82841381	82841381	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004385.4	+1	reviewed	p.P3097	0.224	332	0%	269	17.1%	47	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
HAPLN1	1404	genome.wustl.edu	37	5	82940379	82940379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001884.3	-1	validated	p.Q193R	1.000	64	0%	62	38.7%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
HAPLN1	1404	genome.wustl.edu	37	5	82940397	82940397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001884.3	-1	validated	p.V187A	0.121	64	0%	55	18.2%	3	0%	benign(0.045)	tolerated(0.37)	neutral(0.021)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
RASA1	5921	genome.wustl.edu	37	5	86667934	86667934	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002890.1	+1	reviewed	e13-1	1.000	115	0%	111	24.3%	0	-	-	-	-	-
MBLAC2	153364	genome.wustl.edu	37	5	89756990	89756990	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203406.1	-1	validated	p.S278	0.973	50	0%	111	31.5%	2	0%	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	90002153	90002153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032119.3	+1	reviewed	p.G2891D	1.000	103	0%	126	27%	1	0%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90106307	90106307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032119.3	+1	reviewed	p.T5077I	0.024	158	0%	151	36.4%	4	0%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90261305	90261305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032119.3	+1	reviewed	p.T5977I	0.169	188	0%	178	25.3%	6	0%	benign(0.141)	tolerated(0.65)	neutral(0.015)	NULL
POU5F2	134187	genome.wustl.edu	37	5	93077199	93077199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153216.1	-1	provisional	p.P24L	0.001	16	0%	17	23.5%	0	-	-	-	-	NULL
ERAP2	64167	genome.wustl.edu	37	5	96225030	96225030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000510309	+1	known	p.I331V	0.012	177	0%	180	38.3%	0	-	unknown(0)	-	-	NULL
LNPEP	4012	genome.wustl.edu	37	5	96315201	96315201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005575.2	+1	reviewed	p.V127M	1.000	224	0.4%	244	27.9%	11	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
LNPEP	4012	genome.wustl.edu	37	5	96315395	96315395	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005575.2	+1	reviewed	p.R191	0.247	227	0%	261	30.7%	8	0%	-	-	-	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
RIOK2	55781	genome.wustl.edu	37	5	96498847	96498847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018343.2	-1	validated	p.A526V	1.000	167	0%	107	11.2%	75	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RGMB	285704	genome.wustl.edu	37	5	98128919	98128919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012761.2	+1	validated	p.R300H	0.015	51	0%	68	16.2%	18	0%	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_RGM_C
SLCO4C1	353189	genome.wustl.edu	37	5	101575050	101575050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_180991.4	-1	validated	p.S640N	1.000	167	0%	160	29.4%	0	-	possibly_damaging(0.598)	tolerated(0.39)	neutral(0.223)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
FBXL17	64839	genome.wustl.edu	37	5	107700603	107700603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000496714	-1	known	p.V6I	1.000	109	0%	170	28.2%	4	0%	probably_damaging(0.964)	tolerated(0.24)	neutral(0.444)	superfamily_SSF52047
MAN2A1	4124	genome.wustl.edu	37	5	109155943	109155943	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508043	+1	known	p.W170*	0.764	73	0%	93	16.1%	18	0%	benign(0.088)	tolerated(0.44)	neutral(0.019)	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C
SLC25A46	91137	genome.wustl.edu	37	5	110079475	110079475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138773.1	+1	provisional	p.R124H	1.000	51	0%	47	17%	28	3.5%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	superfamily_Mitochondrial carrier
APC	324	genome.wustl.edu	37	5	112175645	112175645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000038.4	+1	reviewed	p.V1452I	0.795	164	0%	221	35.7%	6	0%	benign(0.027)	tolerated(0.37)	neutral(0.021)	NULL
SRP19	6728	genome.wustl.edu	37	5	112200214	112200214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003135.1	+1	provisional	p.V60I	0.998	156	0%	185	29.2%	138	0%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_SRP19,superfamily_SRP19
MCC	4163	genome.wustl.edu	37	5	112403813	112403813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085377.1	-1	reviewed	p.G665R	1.000	76	0%	50	16%	2	0%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
KCNN2	3781	genome.wustl.edu	37	5	113831702	113831702	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021614.2	+1	reviewed	p.I521	0.999	224	0%	224	16.1%	1	0%	-	-	-	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115783045	115783045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020796.3	-1	validated	p.A786V	1.000	132	0%	139	25.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DTWD2	285605	genome.wustl.edu	37	5	118176658	118176658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173666.2	-1	validated	p.R284H	1.000	90	0%	120	13.3%	5	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118500228	118500228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005509.4	+1	validated	p.A1577T	1.000	186	0%	179	12.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRR16	51334	genome.wustl.edu	37	5	120022076	120022076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016644.1	+1	provisional	p.C173Y	1.000	175	0%	236	33.5%	2	0%	benign(0.362)	tolerated(0.08)	neutral(0.415)	NULL
PPIC	5480	genome.wustl.edu	37	5	122364503	122364503	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000943.4	-1	reviewed	p.G98*	1.000	122	0%	122	36.9%	130	0%	-	-	-	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like
CSNK1G3	1456	genome.wustl.edu	37	5	122881512	122881512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001044723.1	+1	validated	p.G52D	1.000	196	0%	231	24.2%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MEGF10	84466	genome.wustl.edu	37	5	126758397	126758397	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032446.2	+1	validated	p.C542	1.000	37	0%	25	32%	0	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
PRRC1	133619	genome.wustl.edu	37	5	126887585	126887585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130809.3	+1	validated	p.R439C	1.000	77	0%	140	27.9%	57	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127484554	127484554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001046.2	+1	validated	p.G664R	1.000	310	0%	270	27.8%	17	0%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_AA_permease
FBN2	2201	genome.wustl.edu	37	5	127613621	127613621	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001999.3	-1	reviewed	p.C2474	1.000	130	0%	142	35.2%	77	0%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA
FBN2	2201	genome.wustl.edu	37	5	127614480	127614480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001999.3	-1	reviewed	p.A2398T	1.000	135	0%	137	29.2%	48	0%	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127712521	127712521	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001999.3	-1	reviewed	p.N625	1.000	185	0.5%	202	28.7%	15	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127863565	127863565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001999.3	-1	reviewed	p.P178S	1.000	34	0%	68	26.5%	12	0%	benign(0.051)	deleterious(0.02)	neutral(0.386)	superfamily_EGF/Laminin
FNIP1	96459	genome.wustl.edu	37	5	131008572	131008572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133372.2	-1	validated	p.T522N	1.000	260	0%	257	26.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL4	3565	genome.wustl.edu	37	5	132009799	132009799	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000589.2	+1	reviewed	p.G19	0.000	136	0%	227	35.2%	0	-	-	-	-	HMMSmart_SM00190,HMMPfam_IL4
AFF4	27125	genome.wustl.edu	37	5	132262891	132262891	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014423.3	-1	validated	p.T324	1.000	97	0%	122	19.7%	19	0%	-	-	-	HMMPfam_AF-4
VDAC1	7416	genome.wustl.edu	37	5	133311613	133311613	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003374.1	-1	provisional	p.T217	0.986	134	0%	254	13.8%	410	0%	-	-	-	HMMPfam_Porin_3
C5orf24	134553	genome.wustl.edu	37	5	134190858	134190858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135586.1	+1	validated	p.R90C	1.000	104	0%	182	32.4%	51	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PITX1	5307	genome.wustl.edu	37	5	134364949	134364949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002653.4	-1	reviewed	p.C156fs	1.000	-	-	-	-	-	-	-	-	-	NULL
LECT2	3950	genome.wustl.edu	37	5	135282905	135282905	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000512872	-1	known	p.D106	0.002	51	0%	91	14.3%	0	-	-	-	-	NULL
SMAD5	4090	genome.wustl.edu	37	5	135489729	135489729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000398807	+1	known	p.R94C	1.000	112	0%	130	30.8%	24	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
TRPC7	57113	genome.wustl.edu	37	5	135693062	135693062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000513104	-1	known	p.S5I	0.988	66	0%	49	38.8%	0	-	benign(0.017)	deleterious(0.02)	neutral(0.384)	NULL
FAM13B	51306	genome.wustl.edu	37	5	137284829	137284829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016603.2	-1	validated	p.R637C	1.000	238	0%	190	18.4%	19	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BRD8	10902	genome.wustl.edu	37	5	137486476	137486476	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139199.1	-1	reviewed	p.S1026	0.008	258	0%	230	30.9%	0	-	-	-	-	NULL
CDC25C	995	genome.wustl.edu	37	5	137622892	137622892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001790.3	-1	reviewed	p.R331H	1.000	84	0%	105	30.5%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
CTNNA1	1495	genome.wustl.edu	37	5	138160336	138160336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001903.2	+1	validated	p.A236T	1.000	99	0%	120	15.8%	440	0%	possibly_damaging(0.727)	tolerated(0.13)	deleterious(0.517)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA1	1495	genome.wustl.edu	37	5	138163317	138163317	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001903.2	+1	validated	p.C324	1.000	82	0%	108	41.7%	477	0%	-	-	-	HMMPfam_Vinculin
SLC23A1	9963	genome.wustl.edu	37	5	138715467	138715467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000448329	-1	known	p.R238C	0.346	46	0%	65	38.5%	0	-	-	-	-	NULL
ANKHD1	54882	genome.wustl.edu	37	5	139864755	139864755	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000246149	+1	known	p.R135H	0.062	123	0%	141	27%	22	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
HARS	3035	genome.wustl.edu	37	5	140054321	140054321	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002109.3	-1	reviewed	p.G467	0.988	97	0%	135	27.4%	208	0%	-	-	-	HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd
ZMAT2	153527	genome.wustl.edu	37	5	140085390	140085391	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000515493	+1	known	p.C158fs	0.977:0.999	-	-	-	-	-	-	-	-	-	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140166534	140166534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018900.2	+1	reviewed	p.P220L	0.999	99	0%	114	38.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA1	56147	genome.wustl.edu	37	5	140167229	140167229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018900.2	+1	reviewed	p.A452T	0.940	82	0%	57	26.3%	1	0%	possibly_damaging(0.857)	tolerated(0.09)	deleterious(0.627)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA3	56145	genome.wustl.edu	37	5	140181172	140181172	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018906.2	+1	reviewed	p.A130	0.042	103	0%	106	18.9%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140188628	140188628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018907.2	+1	reviewed	p.R619H	0.134	50	0%	42	40.5%	8	0%	benign(0.249)	tolerated(0.09)	neutral(0.322)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140207821	140207821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018909.2	+1	reviewed	p.A49T	1.000	64	0%	75	26.7%	3	0%	benign(0.389)	deleterious(0)	deleterious(0.569)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140209890	140209890	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018909.2	+1	reviewed	p.T738	0.939	36	0%	49	42.9%	1	0%	-	-	-	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140229167	140229167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031857.1	+1	reviewed	p.A363T	0.060	43	0%	46	80.4%	0	-	benign(0.195)	tolerated(0.07)	neutral(0.338)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256425	140256425	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018903.2	+1	reviewed	p.A456	0.374	78	0%	70	40%	0	-	-	-	-	superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347903	140347903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018899.5	+1	reviewed	p.V518I	1.000	145	0%	149	30.2%	0	-	benign(0.115)	tolerated(0.11)	neutral(0.281)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140432388	140432388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013340.2	+1	reviewed	p.V445I	0.602	162	0%	157	40.1%	0	-	benign(0.003)	tolerated(0.53)	neutral(0.007)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140475505	140475505	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018936.2	+1	reviewed	p.S377	0.000	112	0%	134	38.1%	131	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140475779	140475779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018936.2	+1	reviewed	p.A469T	0.958	311	0%	311	28%	76	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140476468	140476468	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018936.2	+1	reviewed	p.S698	0.008	134	0%	122	30.3%	116	0%	-	-	-	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140481868	140481868	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018937.2	+1	reviewed	p.A545	0.207	63	0%	70	44.3%	14	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB5	26167	genome.wustl.edu	37	5	140516785	140516785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015669.2	+1	reviewed	p.A590V	1.000	77	0%	85	10.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140531180	140531180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018939.2	+1	reviewed	p.A448T	0.000	323	0%	363	33.6%	10	0%	benign(0.006)	tolerated(0.41)	neutral(0.015)	superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559278	140559278	+	Missense_Mutation	SNP	G	G	A	rs61741192	byFrequency	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019120.2	+1	reviewed	p.A555T	0.977	117	0%	98	15.3%	57	0%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMSmart_CA,PatternScan_CADHERIN_1
PCDHB10	56126	genome.wustl.edu	37	5	140572576	140572576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018930.3	+1	reviewed	p.A151S	0.000	225	0%	278	30.9%	11	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140573346	140573346	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018930.3	+1	reviewed	p.G407	0.000	135	0%	179	14%	16	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580419	140580419	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018931.2	+1	reviewed	p.E358*	1.000	219	0.5%	280	38.6%	21	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580879	140580879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018931.2	+1	reviewed	p.G511D	0.975	220	0%	177	31.6%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140581144	140581144	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018931.2	+1	reviewed	p.N599	1.000	71	0%	61	23%	22	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140581488	140581488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018931.2	+1	reviewed	p.C714Y	0.650	119	0%	126	31.7%	32	0%	benign(0.01)	tolerated(0.63)	neutral(0.004)	NULL
PCDHB13	56123	genome.wustl.edu	37	5	140594976	140594976	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018933.2	+1	reviewed	p.G427	0.000	265	0%	379	30.9%	40	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140604488	140604488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018934.2	+1	reviewed	p.G471S	0.028	231	0%	248	27.4%	36	0%	possibly_damaging(0.516)	tolerated(0.31)	neutral(0.200)	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140615726	140615726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000274705	+1	known	p.A481T	0.000	69	0%	104	12.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SLC25A2	83884	genome.wustl.edu	37	5	140683267	140683267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031947.2	-1	reviewed	p.A56T	0.007	116	0%	103	31.1%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PCDHGA1	56114	genome.wustl.edu	37	5	140711926	140711926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018912.2	+1	reviewed	p.A559T	0.001	208	0%	167	15.6%	2	0%	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA1	56114	genome.wustl.edu	37	5	140712476	140712476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018912.2	+1	reviewed	p.G742A	0.887	153	0%	140	37.9%	2	0%	possibly_damaging(0.865)	tolerated(0.25)	neutral(0.372)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140735666	140735666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018917.2	+1	reviewed	p.D300G	0.966	47	0%	62	21%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745166	140745166	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018918.2	+1	reviewed	p.T423	0.000	192	0%	179	13.4%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140751840	140751840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018924.2	+1	reviewed	p.R627C	0.748	27	0%	38	26.3%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140753926	140753926	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018919.2	+1	reviewed	p.R92	0.949	51	0%	57	22.8%	2	0%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140764319	140764319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018920.2	+1	reviewed	p.A618V	0.000	67	0%	51	31.4%	4	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773059	140773059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032088.1	+1	reviewed	p.R227C	0.141	61	0%	103	11.7%	0	-	benign(0.036)	deleterious(0.04)	neutral(0.351)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140782948	140782948	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018921.2	+1	reviewed	p.N143	0.001	150	0%	166	26.5%	2	0%	-	-	-	superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788639	140788639	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018926.2	+1	reviewed	p.H290	0.000	90	0%	106	25.5%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140793469	140793469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018913.2	+1	reviewed	p.A243T	0.816	28	0%	20	20%	2	0%	benign(0.015)	tolerated(0.1)	neutral(0.287)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140811102	140811102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003735.2	+1	reviewed	p.T259M	0.994	75	0%	100	27%	0	-	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140865320	140865320	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018928.2	+1	reviewed	p.L194	1.000	111	0%	122	36.1%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HDAC3	8841	genome.wustl.edu	37	5	141007696	141007696	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003883.3	-1	reviewed	p.T250	0.291	41	0%	80	37.5%	119	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
HDAC3	8841	genome.wustl.edu	37	5	141008840	141008840	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003883.3	-1	reviewed	p.D170	1.000	48	0%	91	31.9%	76	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
KIAA0141	9812	genome.wustl.edu	37	5	141307751	141307751	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142603.1	+1	validated	p.R100	0.998	60	0%	65	40%	29	0%	-	-	-	NULL
KIAA0141	9812	genome.wustl.edu	37	5	141312917	141312917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142603.1	+1	validated	p.A283V	0.095	98	0%	93	16.1%	41	0%	benign(0)	tolerated(1)	-	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
SH3RF2	153769	genome.wustl.edu	37	5	145317633	145317633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152550.3	+1	validated	p.R48W	0.998	141	0%	191	33.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
SH3RF2	153769	genome.wustl.edu	37	5	145428704	145428704	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152550.3	+1	validated	p.G406	0.114	88	0%	101	41.6%	7	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
LARS	51520	genome.wustl.edu	37	5	145508568	145508568	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020117.9	-1	reviewed	p.K914	1.000	186	0%	201	28.9%	126	0%	-	-	-	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1
LARS	51520	genome.wustl.edu	37	5	145522644	145522644	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020117.9	-1	reviewed	p.P627	0.000	212	0%	266	39.5%	59	0%	-	-	-	superfamily_Nucleotidylyl transferase
RBM27	54439	genome.wustl.edu	37	5	145609327	145609327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018989.1	+1	validated	p.R148Q	1.000	431	0%	521	31.5%	17	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
TCERG1	10915	genome.wustl.edu	37	5	145836782	145836782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006706.3	+1	reviewed	p.P108S	1.000	282	0%	260	11.2%	18	0%	unknown(0)	tolerated(0.15)	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145843357	145843357	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006706.3	+1	reviewed	e5+1	1.000	256	0%	284	14.1%	0	-	-	-	-	-
C5orf46	389336	genome.wustl.edu	37	5	147286060	147286060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206966.2	-1	validated	p.A2D	0.998	139	0%	135	41.5%	1	0%	unknown(0)	deleterious(0)	-	NULL
FBXO38	81545	genome.wustl.edu	37	5	147781648	147781648	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_205836.1	+1	validated	p.G122	1.000	475	0%	495	27.7%	7	0%	-	-	-	superfamily_F-box domain
ADRB2	154	genome.wustl.edu	37	5	148206510	148206510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000024.5	+1	reviewed	p.V39A	0.999	83	0%	80	13.8%	1	0%	benign(0.011)	tolerated(0.06)	neutral(0.323)	superfamily_Family A G protein-coupled receptor-like
SLC26A2	1836	genome.wustl.edu	37	5	149359913	149359913	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000112.3	+1	reviewed	p.L253	1.000	278	0%	366	28.7%	8	0%	-	-	-	HMMPfam_Sulfate_transp
CSF1R	1436	genome.wustl.edu	37	5	149435906	149435906	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005211.3	-1	reviewed	e17-2	1.000	91	1.1%	77	26%	0	-	-	-	-	-
CSF1R	1436	genome.wustl.edu	37	5	149456962	149456962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005211.3	-1	reviewed	p.R256C	0.000	237	0%	253	23.7%	1	0%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
CSF1R	1436	genome.wustl.edu	37	5	149459777	149459777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005211.3	-1	reviewed	p.R144C	0.000	24	0%	41	14.6%	1	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMSmart_IG,superfamily_SSF48726
PDGFRB	5159	genome.wustl.edu	37	5	149500799	149500799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002609.3	-1	reviewed	p.A811T	1.000	45	0%	59	39%	21	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
CDX1	1044	genome.wustl.edu	37	5	149562432	149562432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001804.2	+1	reviewed	p.R183W	0.995	44	0%	57	19.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CAMK2A	815	genome.wustl.edu	37	5	149629832	149629832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015981.3	-1	reviewed	p.T286I	1.000	33	0%	18	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
TCOF1	6949	genome.wustl.edu	37	5	149743717	149743717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135243.1	+1	reviewed	p.A69V	0.738	52	0%	97	35.1%	42	0%	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	NULL
RBM22	55696	genome.wustl.edu	37	5	150076244	150076244	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018047.2	-1	reviewed	p.R132	0.989	108	0%	121	29.8%	53	0%	-	-	-	NULL
TNIP1	10318	genome.wustl.edu	37	5	150425499	150425499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006058.3	-1	validated	p.A287T	0.000	78	0%	83	33.7%	135	0.7%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
ANXA6	309	genome.wustl.edu	37	5	150484832	150484832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001155.3	-1	reviewed	p.A605T	1.000	56	0%	77	22.1%	90	1.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,HMMPfam_Annexin
ANXA6	309	genome.wustl.edu	37	5	150497341	150497341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001155.3	-1	reviewed	p.R499K	1.000	58	0%	39	12.8%	52	0%	benign(0.157)	tolerated(0.33)	neutral(0.038)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
ANXA6	309	genome.wustl.edu	37	5	150515862	150515862	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001155.3	-1	reviewed	p.G148	0.010	55	0%	52	32.7%	49	0%	-	-	-	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
GM2A	2760	genome.wustl.edu	37	5	150639454	150639454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000405.4	+1	reviewed	p.V74I	0.379	42	0%	53	20.8%	36	0%	benign(0.375)	tolerated(0.24)	neutral(0.157)	HMMSmart_ML,superfamily_SSF63707
FAT2	2196	genome.wustl.edu	37	5	150897192	150897192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001447.2	-1	reviewed	p.V3818I	0.000	100	0%	78	29.5%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAT2	2196	genome.wustl.edu	37	5	150923676	150923676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001447.2	-1	reviewed	p.D2338N	1.000	129	0%	174	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
G3BP1	10146	genome.wustl.edu	37	5	151170505	151170505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005754.2	+1	reviewed	p.R78H	1.000	122	0%	194	28.4%	153	0%	benign(0.004)	tolerated(0.31)	neutral(0.027)	HMMPfam_NTF2,superfamily_NTF2-like
GRIA1	2890	genome.wustl.edu	37	5	152873491	152873491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000827.3	+1	reviewed	p.G29E	1.000	233	0%	254	40.6%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	superfamily_Periplasmic binding protein-like I
GRIA1	2890	genome.wustl.edu	37	5	153190674	153190674	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000827.3	+1	reviewed	p.G870	0.947	85	0%	101	32.7%	0	-	-	-	-	NULL
GALNT10	55568	genome.wustl.edu	37	5	153677534	153677534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198321.3	+1	reviewed	p.T99I	0.999	263	0%	303	28.4%	34	0%	possibly_damaging(0.437)	tolerated(0.17)	neutral(0.201)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154281030	154281030	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015465.3	-1	validated	p.W961*	1.000	172	0%	186	33.3%	15	0%	-	-	-	NULL
MED7	9443	genome.wustl.edu	37	5	156566061	156566061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100816.1	-1	reviewed	p.P128S	1.000	209	0%	229	38%	35	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MED7
FAM71B	153745	genome.wustl.edu	37	5	156592957	156592957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130899.2	-1	validated	p.V75I	0.996	95	0%	90	31.1%	0	-	benign(0.056)	deleterious(0.04)	neutral(0.352)	NULL
THG1L	54974	genome.wustl.edu	37	5	157161639	157161639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017872.3	+1	provisional	p.R142W	1.000	106	0%	165	50.9%	23	0%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_Thg1
ATP10B	23120	genome.wustl.edu	37	5	160059177	160059177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025153.2	-1	validated	p.R527C	0.000	106	0%	115	36.5%	1	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_HAD-like
ATP10B	23120	genome.wustl.edu	37	5	160114946	160114946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025153.2	-1	validated	p.R46W	0.999	169	0%	208	12%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GABRA6	2559	genome.wustl.edu	37	5	161112999	161112999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000811.2	+1	reviewed	p.A2T	0.887	116	0%	116	36.2%	0	-	benign(0.002)	tolerated(0.45)	neutral(0.012)	NULL
GABRA1	2554	genome.wustl.edu	37	5	161302618	161302618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000806.5	+1	reviewed	p.A177T	1.000	140	0%	146	41.1%	0	-	benign(0.004)	tolerated(0.56)	neutral(0.006)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL
GABRA1	2554	genome.wustl.edu	37	5	161324318	161324318	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000806.5	+1	reviewed	p.R421*	1.000	347	0%	381	24.4%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ODZ2	57451	genome.wustl.edu	37	5	167674742	167674742	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122679.1	+1	inferred	p.D2257	0.149	59	0%	61	24.6%	0	-	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169494609	169494609	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004946.2	+1	validated	p.T1521	0.894	308	0.3%	286	24.5%	5	0%	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169504759	169504759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004946.2	+1	validated	p.R1638C	1.000	39	0%	64	46.9%	7	0%	possibly_damaging(0.911)	tolerated(0.06)	deleterious(0.685)	NULL
FBXW11	23291	genome.wustl.edu	37	5	171318553	171318553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012300.2	-1	reviewed	p.R236H	1.000	246	0%	216	12.5%	20	0%	benign(0.032)	tolerated(0.62)	neutral(0.005)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
UBTD2	92181	genome.wustl.edu	37	5	171639137	171639137	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152277.2	-1	validated	p.S134	0.840	167	0%	223	28.7%	47	0%	-	-	-	superfamily_SSF54236
ERGIC1	57222	genome.wustl.edu	37	5	172351026	172351026	+	Missense_Mutation	SNP	G	G	A	rs183246461	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031711.2	+1	reviewed	p.V132M	1.000	86	0%	92	10.9%	347	0%	benign(0.005)	tolerated(0.14)	neutral(0.249)	HMMPfam_DUF1692
CREBRF	153222	genome.wustl.edu	37	5	172517881	172517881	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153607.2	+1	validated	p.D233	1.000	167	0%	231	26%	0	-	-	-	-	NULL
CPEB4	80315	genome.wustl.edu	37	5	173383084	173383084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030627.2	+1	validated	p.P712S	1.000	104	0%	144	30.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DRD1	1812	genome.wustl.edu	37	5	174868922	174868922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000794.3	-1	reviewed	p.A394D	0.974	79	0%	88	23.9%	0	-	benign(0.044)	deleterious(0.02)	neutral(0.386)	NULL
NOP16	51491	genome.wustl.edu	37	5	175813905	175813905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000502663	-1	known	p.G86S	0.881	85	0%	106	40.6%	99	0%	unknown(0)	-	-	NULL
FAF2	23197	genome.wustl.edu	37	5	175933841	175933841	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014613.2	+1	reviewed	p.R410*	1.000	288	0%	406	30.8%	46	0%	-	-	-	HMMPfam_UBX,superfamily_SSF54236
CDHR2	54825	genome.wustl.edu	37	5	176002574	176002574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017675.4	+1	reviewed	p.S279I	1.000	19	0%	28	28.6%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
LMAN2	10960	genome.wustl.edu	37	5	176764235	176764235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006816.2	-1	reviewed	p.E231V	1.000	17	0%	27	44.4%	409	0%	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
DBN1	1627	genome.wustl.edu	37	5	176885424	176885424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080881.2	-1	reviewed	p.A473T	0.601	14	0%	22	31.8%	286	0.3%	probably_damaging(0.955)	tolerated(0.21)	neutral(0.443)	NULL
PDLIM7	9260	genome.wustl.edu	37	5	176915113	176915113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005451.3	-1	reviewed	p.R336C	0.993	12	0%	18	22.2%	162	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
DOK3	79930	genome.wustl.edu	37	5	176931799	176931799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024872.2	-1	validated	p.T253N	0.007	22	0%	48	31.2%	3	0%	benign(0.261)	tolerated(0.38)	neutral(0.044)	HMMPfam_IRS,HMMSmart_SM00310,superfamily_PH domain-like
FAM193B	54540	genome.wustl.edu	37	5	176951541	176951541	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019057.3	-1	validated	p.S614	0.000	8	0.000	14	0.500	36	0%	-	-	-	NULL
RMND5B	64777	genome.wustl.edu	37	5	177570962	177570962	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022762.3	+1	provisional	p.Q183*	1.000	81	0%	109	32.1%	66	0%	-	-	-	HMMSmart_SM00668
ZNF354A	6940	genome.wustl.edu	37	5	178139794	178139794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005649.2	-1	validated	p.T362I	0.768	254	0%	297	30.6%	16	0%	possibly_damaging(0.615)	deleterious(0.01)	deleterious(0.619)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RUFY1	80230	genome.wustl.edu	37	5	178994556	178994556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025158.3	+1	validated	p.L233I	1.000	46	0%	63	31.7%	46	0%	benign(0.004)	tolerated(0.3)	neutral(0.029)	HMMPfam_RUN,HMMSmart_SM00593
RUFY1	80230	genome.wustl.edu	37	5	179034585	179034585	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000502434	+1	known	p.P314S	0.974	78	0%	103	35.9%	117	0%	-	-	-	NULL
SQSTM1	8878	genome.wustl.edu	37	5	179251276	179251276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003900.4	+1	reviewed	p.R209H	0.532	7	0.000	27	0.333	356	0%	possibly_damaging(0.643)	deleterious(0.04)	deleterious(0.575)	NULL
RASGEF1C	255426	genome.wustl.edu	37	5	179538480	179538480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175062.3	-1	validated	p.T427I	0.981	24	0%	21	38.1%	0	-	benign(0.104)	tolerated(0.2)	neutral(0.057)	HMMSmart_SM00147,superfamily_Ras GEF
GFPT2	9945	genome.wustl.edu	37	5	179731780	179731780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005110.2	-1	provisional	p.A612T	1.000	62	0%	111	12.6%	3	0%	benign(0.231)	deleterious(0.03)	neutral(0.388)	HMMPfam_SIS,superfamily_SSF53697
OR2Y1	134083	genome.wustl.edu	37	5	180166920	180166920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001657.1	-1	provisional	p.A47T	0.000	168	0.6%	138	16.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_SSF81321
BTNL8	79908	genome.wustl.edu	37	5	180335823	180335823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040462.2	+1	validated	p.R96H	0.000	477	0%	618	29.8%	0	-	benign(0.083)	tolerated(0.1)	neutral(0.292)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PRPF4B	8899	genome.wustl.edu	37	6	4032829	4032829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003913.4	+1	reviewed	p.R360C	0.992	293	0%	357	12%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDYL	9425	genome.wustl.edu	37	6	4892005	4892005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004824.3	+1	reviewed	p.R28Q	0.999	121	0%	142	39.4%	15	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,superfamily_Chromodomain-like
CDYL	9425	genome.wustl.edu	37	6	4892484	4892484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004824.3	+1	reviewed	p.G188R	0.998	76	0%	57	40.4%	18	0%	benign(0.042)	tolerated(0.15)	neutral(0.243)	NULL
CDYL	9425	genome.wustl.edu	37	6	4937879	4937879	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004824.3	+1	reviewed	p.S343	1.000	67	0%	66	12.1%	28	0%	-	-	-	HMMPfam_ECH,superfamily_SSF52096
CDYL	9425	genome.wustl.edu	37	6	4952505	4952505	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004824.3	+1	reviewed	p.N446	1.000	52	0%	30	23.3%	23	0%	-	-	-	HMMPfam_ECH,superfamily_SSF52096
RREB1	6239	genome.wustl.edu	37	6	7231050	7231050	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003699.3	+1	reviewed	p.G906	0.995	50	0%	51	33.3%	9	0%	-	-	-	NULL
RIOK1	83732	genome.wustl.edu	37	6	7405181	7405181	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031480.2	+1	reviewed	p.D341	0.453	47	0%	43	16.3%	38	0%	-	-	-	HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1
DSP	1832	genome.wustl.edu	37	6	7566614	7566614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004415.2	+1	reviewed	p.R315H	1.000	91	0%	149	22.8%	8	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00150,superfamily_Spectrin repeat
DSP	1832	genome.wustl.edu	37	6	7566696	7566696	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004415.2	+1	reviewed	p.P342	0.999	93	0%	140	24.3%	6	0%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DSP	1832	genome.wustl.edu	37	6	7584593	7584593	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004415.2	+1	reviewed	p.R2366	0.985	135	0%	212	26.9%	26	0%	-	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
DSP	1832	genome.wustl.edu	37	6	7584790	7584790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004415.2	+1	reviewed	p.R2432I	1.000	201	0%	284	36.3%	22	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00250,superfamily_Plakin repeat
TFAP2A	7020	genome.wustl.edu	37	6	10410384	10410384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003220.2	-1	reviewed	p.N77S	1.000	25	0%	25	28%	0	-	benign(0.076)	tolerated(0.34)	neutral(0.028)	NULL
GCNT2	2651	genome.wustl.edu	37	6	10556673	10556673	+	Missense_Mutation	SNP	G	G	A	rs56047397		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001491.2	+1	reviewed	p.R6H	0.151	364	0%	454	26.4%	4	0%	benign(0.016)	deleterious(0.01)	neutral(0.406)	NULL
TMEM14B	81853	genome.wustl.edu	37	6	10751370	10751370	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030969.3	+1	validated	p.S35	0.822	122	0%	135	38.5%	115	0%	-	-	-	HMMPfam_Tmemb_14
MAK	4117	genome.wustl.edu	37	6	10792041	10792041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005906.3	-1	reviewed	p.R395C	1.000	76	0%	115	33%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12120745	12120745	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002114.2	+1	validated	p.S239	0.238	264	0%	523	32.3%	3	0%	-	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12124606	12124606	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002114.2	+1	validated	p.S1526	0.035	119	0%	173	15.6%	2	0%	-	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12124944	12124944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002114.2	+1	validated	p.R1639H	0.000	178	0%	216	30.6%	7	0%	benign(0.006)	tolerated(0.16)	neutral(0.059)	NULL
JARID2	3720	genome.wustl.edu	37	6	15497013	15497013	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004973.2	+1	reviewed	p.S519	0.134	23	0%	13	53.8%	8	0%	-	-	-	NULL
GMPR	2766	genome.wustl.edu	37	6	16247086	16247086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006877.3	+1	reviewed	p.R34H	0.994	74	0%	108	33.3%	48	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IMPDH,superfamily_SSF51412
ATXN1	6310	genome.wustl.edu	37	6	16327499	16327499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000332.3	-1	reviewed	p.G348D	0.647	38	0%	45	37.8%	6	0%	possibly_damaging(0.457)	deleterious(0.03)	deleterious(0.514)	NULL
ATXN1	6310	genome.wustl.edu	37	6	16327800	16327800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000332.3	-1	reviewed	p.V248I	1.000	9	0.000	17	0.353	4	0%	benign(0)	tolerated(1)	-	NULL
RBM24	221662	genome.wustl.edu	37	6	17292146	17292146	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000503965	+1	known	p.P134L	0.146	63	0%	106	40.6%	0	-	-	-	-	NULL
KDM1B	221656	genome.wustl.edu	37	6	18197331	18197331	+	Missense_Mutation	SNP	G	G	T	rs189561999	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153042.3	+1	validated	p.R206L	1.000	151	0%	133	26.3%	5	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MBOAT1	154141	genome.wustl.edu	37	6	20124775	20124775	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080480.1	-1	provisional	p.T257	0.235	349	0%	497	26.8%	27	0%	-	-	-	HMMPfam_MBOAT
GPLD1	2822	genome.wustl.edu	37	6	24450074	24450074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001503.2	-1	reviewed	p.G463	0.005	56	0%	68	17.6%	0	-	-	-	-	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
KIAA0319	9856	genome.wustl.edu	37	6	24588885	24588885	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014809.3	-1	reviewed	p.S310	0.000	132	0%	129	31%	2	0%	-	-	-	HMMSmart_SM00060
LRRC16A	55604	genome.wustl.edu	37	6	25466123	25466123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017640.5	+1	validated	p.A213T	1.000	293	0%	281	24.6%	8	0%	possibly_damaging(0.811)	deleterious(0.05)	deleterious(0.651)	superfamily_SSF52047
HIST1H2AA	221613	genome.wustl.edu	37	6	25726722	25726722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170745.3	-1	reviewed	p.R12C	0.333	93	0%	112	32.1%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_H2A,superfamily_Histone-fold
SLC17A4	10050	genome.wustl.edu	37	6	25762270	25762270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005495.2	+1	validated	p.C27Y	0.099	124	0%	115	32.2%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	superfamily_MFS general substrate transporter
SLC17A1	6568	genome.wustl.edu	37	6	25799093	25799093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005074.3	-1	validated	p.T442A	0.001	177	0%	184	29.3%	0	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	superfamily_MFS general substrate transporter
SLC17A3	10786	genome.wustl.edu	37	6	25868567	25868567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098486.1	-1	validated	p.A17T	0.003	186	0%	158	27.2%	0	-	benign(0.003)	tolerated(0.54)	neutral(0.007)	superfamily_MFS_gen_substrate_transporter
SLC17A2	10246	genome.wustl.edu	37	6	25924060	25924060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005835.2	-1	validated	p.R35C	1.000	222	0%	277	34.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HIST1H3C	8352	genome.wustl.edu	37	6	26045787	26045787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003531.2	+1	reviewed	p.R50H	1.000	94	0%	96	16.7%	0	-	benign(0.041)	-	-	HMMSmart_SM00428,superfamily_Histone-fold
HIST1H1T	3010	genome.wustl.edu	37	6	26108249	26108249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005323.3	-1	reviewed	p.R25*	0.000	110	0%	99	31.3%	0	-	-	-	-	NULL
HIST1H3E	8353	genome.wustl.edu	37	6	26225731	26225731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003532.2	+1	reviewed	p.R117C	1.000	87	0%	80	11.3%	0	-	probably_damaging(0.999)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST1H4H	8365	genome.wustl.edu	37	6	26285581	26285581	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003543.3	-1	reviewed	p.G49	0.895	83	0%	146	11.6%	4	0%	-	-	-	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
BTN3A3	10384	genome.wustl.edu	37	6	26444444	26444444	+	Silent	SNP	C	C	T	rs9461251	byCluster	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006994.4	+1	validated	p.N115	0.000	145	0%	151	26.5%	17	0%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
BTN2A1	11120	genome.wustl.edu	37	6	26459752	26459752	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007049.2	+1	reviewed	p.T42	0.996	69	0%	77	32.5%	23	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
HIST1H4I	8294	genome.wustl.edu	37	6	27107297	27107297	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003495.2	+1	reviewed	p.A70	1.000	73	0%	60	11.7%	2	0%	-	-	-	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
ZNF391	346157	genome.wustl.edu	37	6	27368364	27368364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001076781.1	+1	validated	p.D72G	0.000	303	0%	413	27.4%	2	0%	benign(0.026)	deleterious(0.05)	neutral(0.346)	NULL
HIST1H1B	3009	genome.wustl.edu	37	6	27835027	27835027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005322.2	-1	reviewed	p.G94D	1.000	204	0%	201	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785
ZKSCAN4	387032	genome.wustl.edu	37	6	28215879	28215879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019110.3	-1	provisional	p.A207V	0.000	47	0%	59	11.9%	6	0%	benign(0.016)	tolerated(0.12)	neutral(0.261)	NULL
NKAPL	222698	genome.wustl.edu	37	6	28227768	28227768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007531.1	+1	provisional	p.N207D	0.000	106	0%	161	29.2%	0	-	unknown(0)	tolerated(0.78)	-	NULL
PGBD1	84547	genome.wustl.edu	37	6	28268646	28268646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032507.3	+1	reviewed	p.T339A	0.019	151	0%	186	24.7%	11	0%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
GPX6	257202	genome.wustl.edu	37	6	28473495	28473495	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182701.1	-1	reviewed	p.V148	0.989	123	0%	192	27.1%	0	-	-	-	-	HMMPfam_GSHPx,superfamily_Thioredoxin-like
OR5V1	81696	genome.wustl.edu	37	6	29323623	29323623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030876.5	-1	validated	p.A117V	0.027	331	0%	456	32.2%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
MAS1L	116511	genome.wustl.edu	37	6	29454672	29454672	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052967.1	-1	provisional	p.A336	0.000	120	0%	127	12.6%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2H2	7932	genome.wustl.edu	37	6	29556415	29556415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007160.3	+1	provisional	p.R232W	0.002	300	0%	352	35.5%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABBR1	2550	genome.wustl.edu	37	6	29581217	29581217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001470.2	-1	reviewed	p.H457Y	1.000	217	0%	311	12.9%	3	0%	possibly_damaging(0.438)	tolerated(0.87)	neutral(0.143)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GABBR1	2550	genome.wustl.edu	37	6	29599209	29599209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001470.2	-1	reviewed	p.G85S	1.000	66	0%	86	27.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HLA-A	3105	genome.wustl.edu	37	6	29911095	29911095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002116.6	+1	reviewed	p.R132C	0.002	18	0%	15	40%	635	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
TRIM31	11074	genome.wustl.edu	37	6	30078405	30078405	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007028.3	-1	reviewed	p.L188	0.029	269	0%	312	11.5%	0	-	-	-	-	NULL
TRIM26	7726	genome.wustl.edu	37	6	30153780	30153780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003449.3	-1	validated	p.G498D	0.994	44	0%	36	22.2%	108	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_SPRY,HMMSmart_SM00449
ABCF1	23	genome.wustl.edu	37	6	30553419	30553419	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025091.1	+1	reviewed	p.H520	0.989	203	0%	254	13.8%	85	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCF1	23	genome.wustl.edu	37	6	30557938	30557938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025091.1	+1	reviewed	p.A749V	1.000	123	0%	142	26.8%	137	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX16	8449	genome.wustl.edu	37	6	30624518	30624518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003587.4	-1	reviewed	p.A723P	1.000	124	0%	192	30.7%	43	0%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP1R18	170954	genome.wustl.edu	37	6	30653485	30653485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134870.1	-1	validated	p.R104Q	0.183	52	0%	51	23.5%	15	0%	benign(0.068)	tolerated(0.71)	neutral(0.006)	NULL
TUBB	203068	genome.wustl.edu	37	6	30691403	30691403	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178014.2	+1	provisional	p.S188	0.120	85	0%	128	32.8%	3527	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
CCHCR1	54535	genome.wustl.edu	37	6	31118261	31118261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105564.1	-1	validated	p.A395T	0.170	17	0%	49	18.4%	26	0%	benign(0.007)	tolerated(0.55)	neutral(0.007)	HMMPfam_HCR
MICB	4277	genome.wustl.edu	37	6	31474086	31474086	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005931.3	+1	reviewed	p.N164	0.000	110	0%	79	21.5%	6	0%	-	-	-	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
ATP6V1G2	534	genome.wustl.edu	37	6	31513887	31513887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130463.2	-1	reviewed	p.A61V	1.000	258	0%	387	31.3%	1	0%	possibly_damaging(0.636)	deleterious(0)	deleterious(0.667)	HMMPfam_V-ATPase_G
ATP6V1G2	534	genome.wustl.edu	37	6	31514327	31514327	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130463.2	-1	reviewed	p.Q4*	1.000	81	0%	133	29.3%	1	0%	-	-	-	HMMPfam_V-ATPase_G
PRRC2A	7916	genome.wustl.edu	37	6	31595619	31595619	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080686.2	+1	reviewed	p.S456	0.933	40	0%	62	30.6%	93	0%	-	-	-	NULL
MSH5	4439	genome.wustl.edu	37	6	31727657	31727657	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000498473	+1	known	p.R55C	0.920	67	0%	101	40.6%	9	0%	-	-	-	superfamily_DNA repair protein MutS domain III
VARS	7407	genome.wustl.edu	37	6	31760291	31760291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006295.2	-1	reviewed	p.P222S	0.956	59	0%	103	35.9%	27	0%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
HSPA1L	3305	genome.wustl.edu	37	6	31778429	31778429	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005527.3	-1	reviewed	p.L441	0.997	123	0%	241	29%	3	0%	-	-	-	HMMPfam_HSP70,superfamily_SSF100920
SLC44A4	80736	genome.wustl.edu	37	6	31832450	31832450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025257.2	-1	reviewed	p.D664N	1.000	43	0%	47	27.7%	4	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_DUF580
EHMT2	10919	genome.wustl.edu	37	6	31851623	31851623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006709.3	-1	reviewed	p.T959M	0.997	31	0%	41	31.7%	216	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain
EHMT2	10919	genome.wustl.edu	37	6	31860607	31860607	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006709.3	-1	reviewed	p.T221	1.000	41	0%	60	40%	88	0%	-	-	-	NULL
ZBTB12	221527	genome.wustl.edu	37	6	31867946	31867946	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181842.2	-1	validated	p.N379	0.999	28	0%	27	29.6%	32	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB12	221527	genome.wustl.edu	37	6	31868051	31868051	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181842.2	-1	validated	p.G344	0.990	22	0%	24	20.8%	27	0%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TNXB	7148	genome.wustl.edu	37	6	32037983	32037983	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019105.6	-1	reviewed	p.A1733	0.000	10	0%	22	27.3%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32046817	32046817	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019105.6	-1	reviewed	p.G1456	0.000	40	0%	74	45.9%	0	-	-	-	-	superfamily_Fibronectin type III
FKBPL	63943	genome.wustl.edu	37	6	32096524	32096524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022110.3	-1	reviewed	p.R345H	0.997	135	0%	276	30.4%	6	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF48452
BRD2	6046	genome.wustl.edu	37	6	32946063	32946063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113182.1	+1	reviewed	p.R580H	0.984	243	0%	266	37.2%	403	0%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
HSD17B8	7923	genome.wustl.edu	37	6	33173470	33173470	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014234.3	+1	reviewed	p.G178	0.994	43	0%	93	17.2%	12	0%	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd
RING1	6015	genome.wustl.edu	37	6	33179558	33179558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002931.3	+1	reviewed	p.A300T	1.000	184	0%	237	14.8%	31	0%	unknown(0)	deleterious(0)	-	NULL
VPS52	6293	genome.wustl.edu	37	6	33232201	33232201	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022553.4	-1	reviewed	p.R492*	1.000	134	0%	180	34.4%	42	0%	-	-	-	HMMPfam_Vps52
WDR46	9277	genome.wustl.edu	37	6	33247108	33247108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005452.5	-1	validated	p.A593V	0.041	67	0%	67	31.3%	64	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
ZBTB22	9278	genome.wustl.edu	37	6	33284347	33284347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145338.1	-1	validated	p.R116H	1.000	79	0%	93	32.3%	10	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PHF1	5252	genome.wustl.edu	37	6	33380564	33380564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024165.2	+1	reviewed	p.R111C	1.000	36	0%	89	18%	19	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
ITPR3	3710	genome.wustl.edu	37	6	33638956	33638956	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002224.2	+1	validated	p.A867	1.000	33	0%	25	32%	23	0%	-	-	-	NULL
ITPR3	3710	genome.wustl.edu	37	6	33647659	33647659	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002224.2	+1	validated	p.L1325	1.000	6	0.000	17	0.412	37	0%	-	-	-	HMMPfam_RYDR_ITPR
ITPR3	3710	genome.wustl.edu	37	6	33655304	33655304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002224.2	+1	validated	p.R2076H	1.000	11	0%	17	41.2%	65	0%	possibly_damaging(0.742)	tolerated(0.16)	neutral(0.332)	NULL
GRM4	2914	genome.wustl.edu	37	6	34004237	34004237	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000841.1	-1	reviewed	p.Y550	1.000	33	0%	32	12.5%	0	-	-	-	-	HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2
SNRPC	6631	genome.wustl.edu	37	6	34735746	34735746	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003093.2	+1	reviewed	p.G74	0.997	72	0%	141	11.3%	423	0%	-	-	-	NULL
UHRF1BP1	54887	genome.wustl.edu	37	6	34835142	34835142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017754.3	+1	validated	p.L1185F	0.824	137	0%	156	32.7%	11	0%	possibly_damaging(0.831)	tolerated(0.23)	neutral(0.357)	NULL
ANKS1A	23294	genome.wustl.edu	37	6	34985756	34985756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015245.2	+1	validated	p.R644W	1.000	285	0%	263	31.6%	16	0%	benign(0.139)	tolerated(0.07)	neutral(0.331)	NULL
ANKS1A	23294	genome.wustl.edu	37	6	35050574	35050574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015245.2	+1	validated	p.S939F	1.000	29	0%	25	32%	9	0%	probably_damaging(0.997)	tolerated(0.34)	deleterious(0.489)	HMMSmart_PTB,superfamily_SSF50729
SCUBE3	222663	genome.wustl.edu	37	6	35213768	35213768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152753.2	+1	provisional	p.R883C	1.000	239	0%	389	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
LHFPL5	222662	genome.wustl.edu	37	6	35782405	35782405	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182548.3	+1	reviewed	p.T165	0.650	54	0%	79	40.5%	0	-	-	-	-	HMMPfam_L_HGMIC_fpl
SLC26A8	116369	genome.wustl.edu	37	6	35923075	35923075	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052961.2	-1	reviewed	p.G696*	0.000	177	0%	227	34.4%	0	-	-	-	-	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
STK38	11329	genome.wustl.edu	37	6	36483172	36483172	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007271.2	-1	provisional	p.H204	1.000	118	0%	109	19.3%	39	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FTSJD2	23070	genome.wustl.edu	37	6	37418080	37418080	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015050.2	+1	validated	p.P166	0.999	65	0%	71	21.1%	24	0%	-	-	-	NULL
FTSJD2	23070	genome.wustl.edu	37	6	37429402	37429402	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015050.2	+1	validated	p.A391	0.596	83	0%	107	19.6%	34	0%	-	-	-	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
BTBD9	114781	genome.wustl.edu	37	6	38256131	38256131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099272.1	-1	reviewed	p.W457C	1.000	193	0%	215	29.3%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Gal_bind_like
DNAH8	1769	genome.wustl.edu	37	6	38794124	38794124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001371.2	+1	validated	p.R1130H	1.000	203	0%	353	39.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38825446	38825446	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001371.2	+1	validated	p.S1745	0.924	154	0%	193	27.5%	0	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38906726	38906726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001371.2	+1	validated	p.G3773E	0.987	97	0%	161	23.6%	0	-	benign(0.008)	tolerated(0.63)	neutral(0.004)	NULL
KIF6	221458	genome.wustl.edu	37	6	39330276	39330276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145027.4	-1	validated	p.A627V	0.001	152	0%	158	27.2%	1	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
NFYA	4800	genome.wustl.edu	37	6	41060757	41060757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002505.4	+1	reviewed	p.R274H	1.000	197	0%	304	11.5%	53	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBFB_NFYA,HMMSmart_SM00521,PatternScan_NFYA_HAP2_1
NFYA	4800	genome.wustl.edu	37	6	41062196	41062196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002505.4	+1	reviewed	p.R317Q	1.000	171	0%	199	37.7%	40	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBFB_NFYA,HMMSmart_SM00521
FRS3	10817	genome.wustl.edu	37	6	41738468	41738468	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006653.3	-1	reviewed	p.A456	0.876	21	0%	25	28%	7	0%	-	-	-	NULL
PRICKLE4	29964	genome.wustl.edu	37	6	41754709	41754709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013397.5	+1	validated	p.D333N	0.008	92	0%	137	39.4%	13	0%	benign(0.01)	tolerated(0.14)	neutral(0.250)	NULL
TAF8	129685	genome.wustl.edu	37	6	42025131	42025131	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138572.2	+1	reviewed	p.P123	0.676	78	0%	99	29.3%	14	0%	-	-	-	NULL
TAF8	129685	genome.wustl.edu	37	6	42034053	42034053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138572.2	+1	reviewed	p.Y165H	0.998	28	0%	32	31.2%	11	0%	possibly_damaging(0.834)	tolerated(1)	neutral(0.318)	HMMPfam_TAF8_C
MRPS10	55173	genome.wustl.edu	37	6	42181891	42181891	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018141.3	-1	reviewed	p.H51	0.001	84	0%	119	27.7%	62	0%	-	-	-	NULL
TRERF1	55809	genome.wustl.edu	37	6	42211039	42211039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033502.2	-1	reviewed	p.R936W	1.000	132	0%	150	32%	6	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KIAA0240	23506	genome.wustl.edu	37	6	42832929	42832929	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015349.1	+1	validated	p.G995	0.000	91	0%	92	17.4%	4	0%	-	-	-	NULL
GNMT	27232	genome.wustl.edu	37	6	42930050	42930050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018960.4	+1	reviewed	p.R103W	0.997	48	0%	41	39%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_12,superfamily_SSF53335
GNMT	27232	genome.wustl.edu	37	6	42930595	42930595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018960.4	+1	reviewed	p.A144T	1.000	133	0%	183	32.2%	2	0%	probably_damaging(0.999)	tolerated(0.58)	deleterious(0.495)	HMMPfam_Methyltransf_12,superfamily_SSF53335
PPP2R5D	5528	genome.wustl.edu	37	6	42974804	42974804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006245.2	+1	reviewed	p.R160C	1.000	46	0%	145	31.7%	82	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_B56
CUL7	9820	genome.wustl.edu	37	6	43013336	43013336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014780.4	-1	reviewed	p.R951C	1.000	66	0%	107	17.8%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APC10,superfamily_Gal_bind_like
CUL7	9820	genome.wustl.edu	37	6	43019016	43019016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014780.4	-1	reviewed	p.V308A	1.000	57	0%	80	23.7%	16	0%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
MRPL2	51069	genome.wustl.edu	37	6	43023723	43023723	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015950.3	-1	reviewed	p.A181	0.975	49	0%	81	28.4%	74	0%	-	-	-	HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like
CUL9	23113	genome.wustl.edu	37	6	43153220	43153220	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015089.2	+1	validated	p.L208	1.000	53	0%	98	25.5%	6	0%	-	-	-	NULL
CUL9	23113	genome.wustl.edu	37	6	43189058	43189058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015089.2	+1	validated	p.H2251Y	1.000	18	0%	27	37%	30	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00647,superfamily_RING/U-box
ZNF318	24149	genome.wustl.edu	37	6	43316193	43316193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014345.2	-1	validated	p.G981R	1.000	481	0%	733	27.7%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43325209	43325209	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014345.2	-1	validated	p.K281	0.973	126	0%	158	27.2%	12	0%	-	-	-	NULL
TJAP1	93643	genome.wustl.edu	37	6	43473180	43473180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080604.2	+1	reviewed	p.R411C	0.876	36	0%	23	30.4%	35	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YIPF3	25844	genome.wustl.edu	37	6	43480262	43480262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015388.3	-1	validated	p.R274W	1.000	8	0.000	24	0.583	337	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Yip1
YIPF3	25844	genome.wustl.edu	37	6	43480842	43480842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015388.3	-1	validated	p.A211T	1.000	44	0%	86	32.6%	308	0%	benign(0.003)	tolerated(0.52)	neutral(0.009)	HMMPfam_Yip1
POLH	5429	genome.wustl.edu	37	6	43578328	43578328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006502.2	+1	reviewed	p.R371H	1.000	45	0%	65	29.2%	23	0%	benign(0.136)	tolerated(0.2)	neutral(0.060)	HMMPfam_IMS
POLH	5429	genome.wustl.edu	37	6	43581675	43581675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006502.2	+1	reviewed	p.P508L	0.000	75	0%	102	40.2%	15	0%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
MRPL14	64928	genome.wustl.edu	37	6	44081685	44081685	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032111.2	-1	reviewed	p.N111	0.974	129	0%	228	31.1%	243	0%	-	-	-	HMMPfam_Ribosomal_L14,superfamily_Ribosomal protein L14
CAPN11	11131	genome.wustl.edu	37	6	44148499	44148499	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007058.3	+1	reviewed	p.G587	0.000	206	0%	184	10.9%	0	-	-	-	-	superfamily_SSF47473
CDC5L	988	genome.wustl.edu	37	6	44361190	44361190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001253.2	+1	reviewed	p.A107T	1.000	181	0%	186	11.8%	36	0%	possibly_damaging(0.949)	deleterious(0.04)	deleterious(0.742)	superfamily_Homeodomain_like
CDC5L	988	genome.wustl.edu	37	6	44371715	44371715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001253.2	+1	reviewed	p.A237T	1.000	244	0%	251	26.7%	54	0%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
CDC5L	988	genome.wustl.edu	37	6	44394257	44394257	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001253.2	+1	reviewed	p.P563	0.998	199	0%	260	34.2%	103	0%	-	-	-	NULL
ENPP5	59084	genome.wustl.edu	37	6	46129170	46129170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021572.4	-1	validated	p.I443V	0.029	158	0%	194	25.3%	16	0%	benign(0.029)	tolerated(0.11)	neutral(0.273)	NULL
TDRD6	221400	genome.wustl.edu	37	6	46660194	46660194	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010870.2	+1	validated	p.S1443	0.006	151	0%	273	33%	0	-	-	-	-	NULL
MEP1A	4224	genome.wustl.edu	37	6	46800837	46800837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005588.2	+1	validated	p.A391T	1.000	205	0%	198	12.1%	0	-	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	HMMPfam_MAM,HMMSmart_MAM
GPR116	221395	genome.wustl.edu	37	6	46851334	46851334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098518.1	-1	validated	p.A192T	1.000	56	0%	57	22.8%	0	-	possibly_damaging(0.952)	tolerated(0.61)	neutral(0.400)	HMMPfam_SEA,superfamily_SEA domain
GPR110	266977	genome.wustl.edu	37	6	46977451	46977451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153840.2	-1	validated	p.S574P	1.000	120	0%	172	11.6%	0	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMSmart_SM00303
CD2AP	23607	genome.wustl.edu	37	6	47548614	47548614	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012120.2	+1	reviewed	p.P341	1.000	293	0%	278	33.8%	51	0%	-	-	-	superfamily_SH3
GPR111	222611	genome.wustl.edu	37	6	47649422	47649422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153839.6	+1	validated	p.R308I	0.001	221	0%	244	32.4%	0	-	possibly_damaging(0.749)	deleterious(0.03)	deleterious(0.639)	NULL
PGK2	5232	genome.wustl.edu	37	6	49754752	49754752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138733.4	-1	reviewed	p.C50Y	1.000	172	0.6%	205	36.1%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_PGK,superfamily_PGK
PKHD1	5314	genome.wustl.edu	37	6	51613342	51613342	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138694.3	-1	reviewed	p.C3024	0.080	173	0%	149	19.5%	1	0%	-	-	-	HMMSmart_SM00710,superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51751972	51751972	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138694.3	-1	reviewed	p.P2356	0.868	207	0%	158	28.5%	4	0%	-	-	-	superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51799070	51799070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138694.3	-1	reviewed	p.A1987T	0.076	566	0%	484	22.9%	0	-	benign(0.065)	tolerated(0.23)	neutral(0.046)	HMMPfam_G8
PKHD1	5314	genome.wustl.edu	37	6	51893103	51893103	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138694.3	-1	reviewed	p.T1137	0.000	141	0%	148	36.5%	4	0%	-	-	-	HMMSmart_SM00429,superfamily_E set domains
TMEM14A	28978	genome.wustl.edu	37	6	52548937	52548937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014051.3	+1	validated	p.M78I	1.000	77	0%	101	9.9%	124	0%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Tmemb_14
GCM1	8521	genome.wustl.edu	37	6	52998923	52998923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003643.3	-1	reviewed	p.R92H	0.971	77	0%	88	38.6%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_GCM,superfamily_GCM_motif
KLHL31	401265	genome.wustl.edu	37	6	53519100	53519100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003760.4	-1	validated	p.R324H	1.000	115	0%	160	25.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_Kelch,superfamily_Gal_oxid_central,HMMPfam_Kelch_2
TINAG	27283	genome.wustl.edu	37	6	54245351	54245351	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014464.3	+1	validated	p.G426	0.002	119	0%	114	28.9%	0	-	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
HCRTR2	3062	genome.wustl.edu	37	6	55120046	55120046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001526.3	+1	reviewed	p.S172N	1.000	110	0%	129	16.3%	0	-	possibly_damaging(0.948)	tolerated(0.1)	deleterious(0.677)	HMMPfam_7tm_1,superfamily_SSF81321
GFRAL	389400	genome.wustl.edu	37	6	55216300	55216300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207410.2	+1	validated	p.S207N	1.000	380	0%	365	12.3%	0	-	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	HMMPfam_GDNF,superfamily_SSF110035
HMGCLL1	54511	genome.wustl.edu	37	6	55360227	55360227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019036.2	-1	validated	p.T292M	0.184	145	0%	155	18.7%	6	0%	benign(0.027)	tolerated(0.08)	neutral(0.301)	HMMPfam_HMGL-like,superfamily_Aldolase
BMP5	653	genome.wustl.edu	37	6	55638864	55638864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021073.2	-1	reviewed	p.R337K	1.000	123	0%	130	14.6%	1	0%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
BMP5	653	genome.wustl.edu	37	6	55684513	55684513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021073.2	-1	reviewed	p.R208Q	1.000	197	0%	145	29.7%	0	-	possibly_damaging(0.843)	tolerated(0.36)	neutral(0.343)	HMMPfam_TGFb_propeptide
DST	667	genome.wustl.edu	37	6	56417776	56417776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015548.4	-1	reviewed	p.T2649A	1.000	264	0%	303	33.3%	1	0%	benign(0)	-	-	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56469908	56469908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000370769	-1	known	p.G2962E	0.005	97	0%	112	37.5%	0	-	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	NULL
ZNF451	26036	genome.wustl.edu	37	6	56993634	56993634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031623.2	+1	validated	p.M140I	1.000	90	0%	118	30.5%	4	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KHDRBS2	202559	genome.wustl.edu	37	6	62604670	62604670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152688.2	-1	validated	p.T227I	1.000	67	0%	102	26.5%	0	-	benign(0.006)	tolerated(0.08)	neutral(0.300)	NULL
BAI3	577	genome.wustl.edu	37	6	70034893	70034893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001704.2	+1	reviewed	p.R982C	1.000	150	0%	176	27.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_2
LMBRD1	55788	genome.wustl.edu	37	6	70423650	70423650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018368.3	-1	reviewed	p.A268T	0.118	179	0%	195	29.2%	40	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_LMBR1
FAM135A	57579	genome.wustl.edu	37	6	71235787	71235787	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105531.2	+1	validated	p.S804	0.335	159	0%	173	30.6%	4	0%	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72806739	72806739	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014989.4	+1	reviewed	p.D111	0.998	76	0%	54	25.9%	0	-	-	-	-	superfamily_FYVE/PHD zinc finger
COL12A1	1303	genome.wustl.edu	37	6	75844499	75844499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004370.5	-1	reviewed	p.V1823I	0.999	161	0.6%	176	31.8%	7	0%	possibly_damaging(0.896)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75898125	75898125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004370.5	-1	reviewed	p.C317Y	1.000	371	0%	353	33.7%	3	0%	probably_damaging(1)	-	-	HMMSmart_SM00327,superfamily_vWA-like
FILIP1	27145	genome.wustl.edu	37	6	76063383	76063383	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015687.2	-1	validated	p.E167	1.000	109	0%	159	25.8%	4	0%	-	-	-	HMMPfam_CortBP2
MYO6	4646	genome.wustl.edu	37	6	76596669	76596669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004999.3	+1	reviewed	p.K872N	0.726	130	0%	179	12.8%	95	1%	benign(0.026)	tolerated(0.55)	neutral(0.008)	NULL
MYO6	4646	genome.wustl.edu	37	6	76601016	76601016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004999.3	+1	reviewed	p.R980H	0.988	105	0%	119	27.7%	135	0%	unknown(0)	deleterious(0.02)	-	NULL
IMPG1	3617	genome.wustl.edu	37	6	76640790	76640790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001563.2	-1	provisional	p.A708V	0.876	85	0%	59	11.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IMPG1	3617	genome.wustl.edu	37	6	76657050	76657050	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001563.2	-1	provisional	p.Y675	1.000	104	0%	93	31.2%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
PHIP	55023	genome.wustl.edu	37	6	79655055	79655055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017934.5	-1	validated	p.A1597V	0.107	391	0%	355	38.6%	23	0%	benign(0.014)	tolerated(0.1)	neutral(0.287)	NULL
ELOVL4	6785	genome.wustl.edu	37	6	80635973	80635973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022726.3	-1	reviewed	p.R76C	1.000	98	0%	140	31.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELO
IBTK	25998	genome.wustl.edu	37	6	82881191	82881191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015525.2	-1	reviewed	p.T1338I	1.000	98	0%	127	12.6%	24	0%	benign(0.296)	tolerated(0.26)	neutral(0.126)	NULL
IBTK	25998	genome.wustl.edu	37	6	82933831	82933831	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015525.2	-1	reviewed	p.W299*	1.000	256	0%	228	34.2%	12	0%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
DOPEY1	23033	genome.wustl.edu	37	6	83839124	83839124	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015018.2	+1	validated	p.A746	1.000	141	0%	181	30.4%	12	0%	-	-	-	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83848491	83848491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015018.2	+1	validated	p.T1577M	1.000	159	0%	159	20.1%	9	0%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84913771	84913771	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014895.2	-1	validated	p.P205	0.001	175	0%	241	15.4%	3	0%	-	-	-	NULL
LOC100289653	100289653	genome.wustl.edu	37	6	87607142	87607142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342648.1	+1	model	p.R103C	0.962	134	0%	123	27.6%	0	-	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87965485	87965485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015021.1	+1	validated	p.R713H	1.000	100	0%	162	36.4%	8	0%	possibly_damaging(0.777)	tolerated(0.43)	neutral(0.303)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87965931	87965931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015021.1	+1	validated	p.A862S	0.955	117	0%	215	19.1%	4	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
GJB7	375519	genome.wustl.edu	37	6	87993978	87993978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198568.2	-1	validated	p.P218H	0.000	305	0%	292	22.6%	0	-	benign(0.075)	deleterious(0.01)	neutral(0.411)	NULL
C6orf165	154313	genome.wustl.edu	37	6	88173930	88173930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031743.2	+1	validated	p.V611I	0.311	105	0%	131	34.4%	2	0%	benign(0.04)	tolerated(0.47)	neutral(0.013)	NULL
AKIRIN2	55122	genome.wustl.edu	37	6	88385636	88385636	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018064.3	-1	validated	p.A181	0.890	98	0%	134	27.6%	154	0%	-	-	-	NULL
RRAGD	58528	genome.wustl.edu	37	6	90077809	90077809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021244.4	-1	validated	p.A390V	1.000	251	0%	271	31.4%	73	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
MDN1	23195	genome.wustl.edu	37	6	90417166	90417166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014611.1	-1	provisional	p.R2643Q	0.963	154	0%	172	11.6%	3	0%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	NULL
MAP3K7	6885	genome.wustl.edu	37	6	91263238	91263238	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145331.1	-1	reviewed	p.R225	1.000	313	0%	317	26.8%	46	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GPR63	81491	genome.wustl.edu	37	6	97246792	97246792	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001143957.1	-1	validated	p.N272	0.995	179	0%	198	34.8%	5	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PNISR	25957	genome.wustl.edu	37	6	99856110	99856110	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015491.1	-1	validated	p.R237	0.824	130	0%	138	10.9%	27	0%	-	-	-	NULL
PNISR	25957	genome.wustl.edu	37	6	99862500	99862500	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015491.1	-1	validated	p.W12*	1.000	82	0%	104	15.4%	40	0%	-	-	-	NULL
ASCC3	10973	genome.wustl.edu	37	6	101311941	101311941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006828.2	-1	validated	p.I80M	1.000	107	0.9%	179	12.8%	9	0%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
PRDM1	639	genome.wustl.edu	37	6	106553037	106553037	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001198.3	+1	reviewed	p.T334	0.991	251	0%	214	33.6%	3	0%	-	-	-	NULL
LACE1	246269	genome.wustl.edu	37	6	108676881	108676881	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000421954	+1	known	p.W14*	1.000	168	0%	217	17.5%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_AFG1_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases
FOXO3	2309	genome.wustl.edu	37	6	108984839	108984839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001455.3	+1	reviewed	p.A268V	1.000	46	0%	35	31.4%	15	0%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
FIG4	9896	genome.wustl.edu	37	6	110064354	110064354	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014845.5	+1	reviewed	p.C306	0.961	231	0%	233	31.8%	40	0%	-	-	-	HMMPfam_Syja_N
CDC40	51362	genome.wustl.edu	37	6	110536513	110536513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015891.2	+1	reviewed	p.R323C	1.000	142	0%	145	24.1%	17	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SLC22A16	85413	genome.wustl.edu	37	6	110752421	110752421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033125.2	-1	provisional	p.A492T	0.076	149	0%	112	13.4%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LOC441166	441166	genome.wustl.edu	37	6	111179995	111179995	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_016728.3	+1	model	NULL	1.000	24	0%	82	26.8%	0	-	-	-	-	-
SLC16A10	117247	genome.wustl.edu	37	6	111498537	111498537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018593.4	+1	validated	p.G204D	1.000	150	0%	135	22.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HS3ST5	222537	genome.wustl.edu	37	6	114378692	114378692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153612.3	-1	validated	p.R257H	1.000	207	0%	197	15.2%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
DSE	29940	genome.wustl.edu	37	6	116720574	116720574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080976.1	+1	reviewed	p.A54V	0.094	100	0%	90	21.1%	0	-	benign(0.014)	tolerated(0.23)	neutral(0.042)	NULL
FAM162B	221303	genome.wustl.edu	37	6	117073782	117073782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085480.2	-1	validated	p.A156V	0.956	167	0%	182	40.1%	3	0%	unknown(0)	tolerated(0.09)	-	HMMPfam_DUF1075
FAM162B	221303	genome.wustl.edu	37	6	117086347	117086347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085480.2	-1	validated	p.R82C	0.999	77	0%	62	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1075
ROS1	6098	genome.wustl.edu	37	6	117631437	117631437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002944.2	-1	reviewed	p.A2081T	1.000	191	0%	262	40.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
ASF1A	25842	genome.wustl.edu	37	6	119228761	119228761	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014034.2	+1	reviewed	p.S199	1.000	47	0%	77	27.3%	90	1.1%	-	-	-	NULL
FAM184A	79632	genome.wustl.edu	37	6	119327310	119327310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000398222	-1	known	p.R496Q	0.000	145	0%	181	14.9%	0	-	unknown(0)	-	-	NULL
MAN1A1	4121	genome.wustl.edu	37	6	119509656	119509656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005907.2	-1	reviewed	p.R545W	1.000	280	0%	324	17%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
C6orf170	221322	genome.wustl.edu	37	6	121482122	121482122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152730.4	-1	validated	p.R884Q	1.000	273	0%	303	11.6%	7	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CLVS2	134829	genome.wustl.edu	37	6	123332281	123332281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010852.2	+1	provisional	p.R181*	1.000	122	0%	165	29.1%	0	-	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
CLVS2	134829	genome.wustl.edu	37	6	123384854	123384854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010852.2	+1	provisional	p.R311H	1.000	188	0%	131	10.7%	0	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	NULL
TRMT11	60487	genome.wustl.edu	37	6	126332535	126332535	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453993	+1	known	p.H98Y	0.003	146	0%	116	31%	18	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
KIAA0408	9729	genome.wustl.edu	37	6	127767592	127767592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014702.4	-1	validated	p.Q624H	0.996	471	0%	482	28.6%	1	0%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128411003	128411003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135648.1	-1	validated	p.R433C	1.000	237	0%	224	32.1%	36	0%	possibly_damaging(0.836)	tolerated(0.2)	neutral(0.368)	HMMSmart_FN3,superfamily_FN_III-like
LAMA2	3908	genome.wustl.edu	37	6	129513953	129513953	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000426.3	+1	reviewed	p.P579	0.000	61	0%	53	35.8%	0	-	-	-	-	superfamily_ConA_like_lec_gl,HMMSmart_LamB
LAMA2	3908	genome.wustl.edu	37	6	129663507	129663507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000426.3	+1	reviewed	p.A1444D	1.000	252	0%	250	30.4%	0	-	benign(0.098)	tolerated(0.1)	neutral(0.294)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_ConA_like_lec_gl,superfamily_SSF57196
LAMA2	3908	genome.wustl.edu	37	6	129762027	129762027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000426.3	+1	reviewed	p.V2051A	0.996	68	0%	87	29.9%	0	-	probably_damaging(0.988)	tolerated(0.35)	neutral(0.458)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_II
LAMA2	3908	genome.wustl.edu	37	6	129781355	129781355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000426.3	+1	reviewed	p.A2293V	1.000	215	0%	211	24.2%	1	0%	benign(0.084)	tolerated(0.18)	neutral(0.062)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
L3MBTL3	84456	genome.wustl.edu	37	6	130381237	130381237	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032438.1	+1	validated	p.G272	0.226	101	0%	108	23.1%	24	0%	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
MED23	9439	genome.wustl.edu	37	6	131912573	131912573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004830.2	-1	reviewed	p.R1189H	1.000	133	0%	123	13.8%	41	0%	benign(0.002)	tolerated(0.47)	neutral(0.011)	NULL
CTAGE9	643854	genome.wustl.edu	37	6	132031205	132031205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145659.1	-1	provisional	p.L318P	0.000	195	0%	273	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENPP3	5169	genome.wustl.edu	37	6	132054739	132054739	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005021.3	+1	reviewed	p.S655	0.990	141	0.7%	109	30.3%	2	0%	-	-	-	HMMSmart_NUC,superfamily_SSF54060
CTGF	1490	genome.wustl.edu	37	6	132271165	132271165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001901.2	-1	reviewed	p.A226V	1.000	31	0%	62	25.8%	36	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MOXD1	26002	genome.wustl.edu	37	6	132649728	132649728	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015529.2	-1	validated	p.E223	1.000	88	0%	73	31.5%	15	0%	-	-	-	HMMPfam_Cu2_monooxygen,superfamily_PHM/PNGase F
TAAR9	134860	genome.wustl.edu	37	6	132860433	132860433	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175057.3	+1	reviewed	p.S335	0.002	44	0%	81	16%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TAAR8	83551	genome.wustl.edu	37	6	132874647	132874647	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053278.1	+1	provisional	p.P272	0.380	237	0%	294	31.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
EYA4	2070	genome.wustl.edu	37	6	133783874	133783874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000421413	+1	known	p.P169S	1.000	132	0%	130	34.6%	0	-	-	-	-	NULL
EYA4	2070	genome.wustl.edu	37	6	133844247	133844247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004100.4	+1	reviewed	p.A557V	1.000	234	0%	267	16.9%	0	-	possibly_damaging(0.886)	tolerated(0.11)	deleterious(0.618)	HMMPfam_Hydrolase
SLC2A12	154091	genome.wustl.edu	37	6	134350497	134350497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145176.2	-1	validated	p.A156T	1.000	192	0%	225	16%	48	0%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
HBS1L	10767	genome.wustl.edu	37	6	135360902	135360902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006620.3	-1	reviewed	p.R80H	1.000	383	0%	381	30.4%	51	0%	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMPfam_DUF1916,superfamily_HBS1-like domain
MYB	4602	genome.wustl.edu	37	6	135516133	135516133	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000237302	+1	known	p.S328	0.003	19	0%	34	35.3%	0	-	-	-	-	NULL
MYB	4602	genome.wustl.edu	37	6	135518313	135518313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130173.1	+1	reviewed	p.S473I	0.995	129	0%	188	36.7%	6	0%	benign(0.255)	deleterious(0.01)	neutral(0.432)	NULL
PDE7B	27115	genome.wustl.edu	37	6	136475245	136475245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018945.3	+1	reviewed	p.P171S	1.000	102	0%	91	35.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PERP	64065	genome.wustl.edu	37	6	138413249	138413249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022121.4	-1	validated	p.C171Y	1.000	103	0%	88	34.1%	248	0%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
PERP	64065	genome.wustl.edu	37	6	138417610	138417610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022121.4	-1	validated	p.A79V	1.000	69	0%	89	34.8%	393	0%	possibly_damaging(0.915)	tolerated(0.11)	deleterious(0.638)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143092763	143092763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006734.3	-1	provisional	p.P1038H	1.000	76	0%	73	30.1%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143095614	143095614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006734.3	-1	provisional	p.R88C	0.995	183	0%	157	14.6%	6	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
FUCA2	2519	genome.wustl.edu	37	6	143818583	143818583	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032020.3	-1	validated	p.W402*	1.000	71	0%	70	32.9%	247	0.8%	-	-	-	HMMPfam_Alpha_L_fucos,HMMSmart_Alpha_L_fucos
LTV1	84946	genome.wustl.edu	37	6	144184259	144184259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032860.3	+1	provisional	p.P385S	1.000	350	0%	292	31.2%	78	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LTV
STX11	8676	genome.wustl.edu	37	6	144507993	144507993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003764.3	+1	reviewed	p.R77W	1.000	25	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Syntaxin,HMMSmart_SynN,superfamily_t-snare
TAB2	23118	genome.wustl.edu	37	6	149699953	149699953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015093.4	+1	reviewed	p.S301F	1.000	399	0%	407	29%	52	0%	possibly_damaging(0.92)	deleterious(0.03)	deleterious(0.736)	NULL
TAB2	23118	genome.wustl.edu	37	6	149700439	149700439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015093.4	+1	reviewed	p.T463I	1.000	352	0%	332	13%	44	0%	probably_damaging(0.988)	tolerated(0.49)	neutral(0.448)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149842297	149842297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139126.2	-1	reviewed	p.C294Y	1.000	158	0%	211	15.6%	56	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
C6orf72	116254	genome.wustl.edu	37	6	149893424	149893424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138785.3	+1	predicted	p.G42S	0.419	57	0%	92	29.3%	7	0%	benign(0.015)	tolerated(0.81)	neutral(0.001)	NULL
KATNA1	11104	genome.wustl.edu	37	6	149918257	149918257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007044.2	-1	reviewed	p.A407T	1.000	142	0%	179	30.2%	69	0%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
LATS1	9113	genome.wustl.edu	37	6	150023129	150023129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004690.2	-1	reviewed	p.S45Y	1.000	154	0%	212	42.5%	11	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PLEKHG1	57480	genome.wustl.edu	37	6	151130320	151130320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029884.1	+1	provisional	p.R331H	1.000	72	0%	67	31.3%	29	0%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PLEKHG1	57480	genome.wustl.edu	37	6	151130806	151130806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029884.1	+1	provisional	p.R405H	1.000	53	0%	73	17.8%	35	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
AKAP12	9590	genome.wustl.edu	37	6	151626920	151626920	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005100.3	+1	reviewed	p.G67	0.026	90	0%	83	34.9%	4	0%	-	-	-	NULL
RMND1	55005	genome.wustl.edu	37	6	151748663	151748663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017909.2	-1	validated	p.A262T	0.975	74	0%	102	24.5%	102	0%	benign(0.021)	tolerated(0.59)	neutral(0.005)	HMMPfam_DUF155
SYNE1	23345	genome.wustl.edu	37	6	152529184	152529184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182961.2	-1	reviewed	p.S7583P	1.000	240	0%	259	29%	1	0%	possibly_damaging(0.891)	deleterious(0.02)	deleterious(0.734)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152673399	152673399	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182961.2	-1	reviewed	p.G3781	0.000	182	0%	166	15.1%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152728224	152728224	+	Silent	SNP	G	G	A	rs185829704	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182961.2	-1	reviewed	p.C2216	0.127	104	0%	88	13.6%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152757143	152757143	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000367248	-1	known	p.A973V	0.001	142	0%	163	35.6%	0	-	-	-	-	superfamily_Spectrin repeat
VIP	7432	genome.wustl.edu	37	6	153075302	153075302	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003381.2	+1	reviewed	p.L37	0.323	77	0%	67	35.8%	0	-	-	-	-	NULL
SCAF8	22828	genome.wustl.edu	37	6	155131217	155131217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014892.3	+1	validated	p.R432H	1.000	543	0.2%	654	28.1%	28	0%	unknown(0)	deleterious(0)	-	NULL
TIAM2	26230	genome.wustl.edu	37	6	155577856	155577856	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012454.3	+1	reviewed	p.S1569	0.991	67	0%	51	29.4%	5	0%	-	-	-	NULL
TFB1M	51106	genome.wustl.edu	37	6	155579199	155579199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016020.2	-1	validated	p.A271V	0.315	132	0.8%	155	40.6%	13	0%	benign(0.004)	tolerated(0.13)	neutral(0.253)	HMMPfam_RrnaAD,superfamily_SSF53335
NOX3	50508	genome.wustl.edu	37	6	155743924	155743924	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015718.2	-1	reviewed	p.C404	0.999	209	0%	302	14.9%	0	-	-	-	-	HMMPfam_NAD_binding_6,superfamily_SSF52343
ARID1B	57492	genome.wustl.edu	37	6	157527963	157527963	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017519.2	+1	validated	p.P1878	0.290	91	0%	92	34.8%	53	0%	-	-	-	NULL
SNX9	51429	genome.wustl.edu	37	6	158359775	158359775	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016224.3	+1	reviewed	p.L548	1.000	353	0%	319	29.8%	67	0%	-	-	-	HMMPfam_BAR_3_WASP_bdg
SNX9	51429	genome.wustl.edu	37	6	158362005	158362005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016224.3	+1	reviewed	p.T580M	1.000	89	0%	99	26.3%	44	0%	possibly_damaging(0.704)	tolerated(0.17)	neutral(0.312)	HMMPfam_BAR_3_WASP_bdg
SYNJ2	8871	genome.wustl.edu	37	6	158454617	158454617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003898.3	+1	reviewed	p.V206I	1.000	42	0%	59	30.5%	7	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Syja_N
SYNJ2	8871	genome.wustl.edu	37	6	158483059	158483059	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003898.3	+1	reviewed	p.T330	1.000	78	0%	63	15.9%	10	0%	-	-	-	HMMPfam_Syja_N
TULP4	56995	genome.wustl.edu	37	6	158923869	158923869	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020245.3	+1	validated	p.S1058	0.984	19	0%	25	44%	2	0%	-	-	-	NULL
TAGAP	117289	genome.wustl.edu	37	6	159456955	159456955	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_054114.3	-1	reviewed	p.S700	0.996	74	0%	59	49.2%	0	-	-	-	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159653534	159653534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032532.2	+1	validated	p.A664T	0.000	37	0%	29	20.7%	2	0%	unknown(0)	tolerated(0.13)	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159653815	159653815	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000329629	+1	known	p.A653T	0.003	45	0%	43	23.3%	5	0%	-	-	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159667986	159667986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032532.2	+1	validated	p.V1559I	0.808	90	0%	115	39.1%	6	0%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160482790	160482790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000876.2	+1	reviewed	p.A1138T	0.042	147	0%	162	13%	48	0%	possibly_damaging(0.697)	deleterious(0.03)	deleterious(0.615)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160484515	160484515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000876.2	+1	reviewed	p.D1247N	1.000	148	0%	178	27.5%	67	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
LPA	4018	genome.wustl.edu	37	6	161032626	161032626	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005577.2	-1	reviewed	p.S857	0.001	1072	0%	1119	33%	1	0%	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161132157	161132157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000301.3	+1	reviewed	p.T114M	0.000	138	0%	164	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161174044	161174044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000301.3	+1	reviewed	p.R795H	0.987	188	0%	284	29.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PACRG	135138	genome.wustl.edu	37	6	163483345	163483345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152410.2	+1	reviewed	p.P152L	0.904	92	0%	105	29.5%	5	0%	possibly_damaging(0.639)	deleterious(0)	deleterious(0.668)	HMMPfam_ParcG
T	6862	genome.wustl.edu	37	6	166575988	166575988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003181.2	-1	reviewed	p.S284N	1.000	58	0%	41	17.1%	1	0%	benign(0)	tolerated(1)	-	NULL
RPS6KA2	6196	genome.wustl.edu	37	6	166833437	166833437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006932.1	-1	reviewed	p.R593C	1.000	43	0%	55	14.5%	11	0%	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA2	6196	genome.wustl.edu	37	6	166862308	166862308	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006932.1	-1	reviewed	p.T420	0.997	53	0%	51	11.8%	9	0%	-	-	-	superfamily_Kinase_like
RNASET2	8635	genome.wustl.edu	37	6	167344582	167344582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003730.4	-1	reviewed	p.A173T	0.025	241	0%	276	30.8%	458	0.2%	benign(0.001)	tolerated(0.74)	neutral(0.002)	HMMPfam_Ribonuclease_T2,superfamily_Ribonuclease Rh-like
TTLL2	83887	genome.wustl.edu	37	6	167754379	167754379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031949.4	+1	validated	p.L331F	0.997	335	0%	577	32.1%	0	-	possibly_damaging(0.837)	tolerated(0.22)	neutral(0.361)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
MLLT4	4301	genome.wustl.edu	37	6	168265414	168265414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040001.1	+1	validated	p.H97Y	1.000	470	0%	511	34.8%	7	0%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_RA,HMMSmart_RA
MLLT4	4301	genome.wustl.edu	37	6	168312060	168312060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040001.1	+1	validated	p.R642Q	1.000	160	0%	217	28.1%	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMOC2	64094	genome.wustl.edu	37	6	168949821	168949821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022138.2	+1	reviewed	p.R203H	0.997	195	0%	212	19.8%	18	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_Thyroglobulin_1
THBS2	7058	genome.wustl.edu	37	6	169632165	169632165	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003247.2	-1	reviewed	p.D687	0.999	25	0%	36	13.9%	8	0%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_2
HEATR2	54919	genome.wustl.edu	37	7	803543	803543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017802.3	+1	validated	p.A572V	0.000	32	0%	38	15.8%	58	0%	benign(0.006)	tolerated(0.27)	neutral(0.034)	superfamily_ARM repeat
SUN1	23353	genome.wustl.edu	37	7	894593	894593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130965.2	+1	reviewed	p.R434C	0.311	58	0%	60	21.7%	70	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUN1	23353	genome.wustl.edu	37	7	908997	908997	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000433212	+1	known	p.P513S	0.440	154	0%	257	32.3%	116	0%	-	-	-	HMMPfam_Sad1_UNC
MAD1L1	8379	genome.wustl.edu	37	7	2252859	2252859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013836.1	-1	reviewed	p.G325D	1.000	37	0%	53	20.8%	33	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_MAD
MAD1L1	8379	genome.wustl.edu	37	7	2260641	2260641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000402746	-1	known	p.L25F	0.000	16	0%	34	44.1%	0	-	unknown(0)	-	-	HMMPfam_MAD
SDK1	221935	genome.wustl.edu	37	7	3658831	3658831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152744.3	+1	validated	p.R140C	0.003	86	0%	83	13.3%	10	0%	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SDK1	221935	genome.wustl.edu	37	7	4213878	4213878	+	Missense_Mutation	SNP	G	G	A	rs190314623	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152744.3	+1	validated	p.G1609S	1.000	155	0%	91	35.2%	13	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNRC18	84629	genome.wustl.edu	37	7	5360232	5360232	+	Silent	SNP	G	G	A	rs192715194	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000328270	-1	known	p.R3C	0.005	31	0%	43	20.9%	40	0%	-	-	-	NULL
FSCN1	6624	genome.wustl.edu	37	7	5643168	5643168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003088.2	+1	validated	p.R344H	0.581	12	0%	22	27.3%	265	0%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	superfamily_Actin_crosslink,HMMPfam_Fascin
RNF216	54476	genome.wustl.edu	37	7	5662498	5662498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207111.2	-1	reviewed	p.R922H	1.000	48	0%	43	27.9%	43	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
USP42	84132	genome.wustl.edu	37	7	6187481	6187481	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032172.2	+1	validated	p.A448	0.000	90	0%	164	14%	14	0%	-	-	-	NULL
CYTH3	9265	genome.wustl.edu	37	7	6217519	6217519	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004227.3	-1	reviewed	p.V101	0.482	95	0%	137	29.2%	15	0%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
DAGLB	221955	genome.wustl.edu	37	7	6464452	6464452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000454738	-1	known	p.R171H	0.719	41	0%	47	17%	14	0%	unknown(0)	-	-	NULL
COL28A1	340267	genome.wustl.edu	37	7	7483277	7483277	+	Missense_Mutation	SNP	G	G	A	rs186252649	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037763.2	-1	validated	p.A530V	0.919	71	0%	59	30.5%	2	0%	probably_damaging(0.959)	tolerated(0.37)	neutral(0.422)	HMMPfam_Collagen
ICA1	3382	genome.wustl.edu	37	7	8272305	8272305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004968.2	-1	reviewed	p.T33M	1.000	132	0%	184	34.2%	38	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arfaptin
LOC340268	340268	genome.wustl.edu	37	7	9766538	9766538	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_041608.1	+1	model	NULL	0.987	34	0%	24	37.5%	0	-	-	-	-	-
LOC340268	340268	genome.wustl.edu	37	7	9767685	9767685	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_041608.1	+1	model	NULL	0.919	21	0%	14	35.7%	0	-	-	-	-	-
SCIN	85477	genome.wustl.edu	37	7	12662515	12662515	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001112706.2	+1	validated	p.Y252	1.000	372	0%	360	31.7%	0	-	-	-	-	HMMSmart_SM00262,superfamily_C-terminal gelsolin-like domain of Sec23/24
ANKMY2	57037	genome.wustl.edu	37	7	16640446	16640446	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020319.2	-1	validated	p.S422	0.000	129	0.8%	140	32.9%	17	0%	-	-	-	NULL
ITGB8	3696	genome.wustl.edu	37	7	20371448	20371448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002214.2	+1	reviewed	p.A7T	0.712	16	0%	10	40%	11	0%	benign(0.041)	deleterious(0.01)	neutral(0.408)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20698248	20698248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178559.5	+1	validated	p.T107	0.022	83	0%	203	32%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20778740	20778740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178559.5	+1	validated	p.R556H	0.615	30	0%	56	14.3%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20784931	20784931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178559.5	+1	validated	p.P655L	1.000	159	0%	249	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21604017	21604017	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003777.3	+1	reviewed	e6+2	1.000	63	0%	76	38.2%	0	-	-	-	-	-
DNAH11	8701	genome.wustl.edu	37	7	21640466	21640466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003777.3	+1	reviewed	p.A1058D	0.000	621	0%	788	31.5%	2	0%	benign(0.047)	tolerated(0.62)	neutral(0.007)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21938973	21938973	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003777.3	+1	reviewed	p.R4364*	0.995	254	0.4%	233	14.2%	12	0%	-	-	-	HMMPfam_Dynein_heavy
STK31	56164	genome.wustl.edu	37	7	23823220	23823220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031414.3	+1	reviewed	p.A696T	1.000	184	0%	205	33.2%	2	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
NPY	4852	genome.wustl.edu	37	7	24324969	24324969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000905.3	+1	reviewed	p.G37D	0.998	42	0%	40	22.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hormone_3,HMMSmart_SM00309
MPP6	51678	genome.wustl.edu	37	7	24727177	24727177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016447.2	+1	provisional	p.A523T	1.000	384	0%	348	23.9%	7	0%	possibly_damaging(0.565)	tolerated(0.24)	neutral(0.231)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
DFNA5	1687	genome.wustl.edu	37	7	24756974	24756974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127453.1	-1	reviewed	p.G199E	0.998	37	0%	70	10%	9	0%	benign(0.374)	tolerated(0.08)	neutral(0.419)	HMMPfam_Gasdermin
OSBPL3	26031	genome.wustl.edu	37	7	24843980	24843980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015550.2	-1	reviewed	p.R841W	1.000	227	0.4%	302	10.3%	9	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Oxysterol_BP
C7orf31	136895	genome.wustl.edu	37	7	25175618	25175618	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138811.3	-1	validated	p.G582	0.994	140	0%	176	17.6%	12	0%	-	-	-	NULL
HOXA4	3201	genome.wustl.edu	37	7	27168963	27168963	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002141.4	-1	reviewed	p.R282*	1.000	39	0%	60	20%	0	-	-	-	-	NULL
HOXA7	3204	genome.wustl.edu	37	7	27196138	27196138	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006896.3	-1	reviewed	p.A9	1.000	47	0%	74	10.8%	1	0%	-	-	-	NULL
HOXA13	3209	genome.wustl.edu	37	7	27238060	27238060	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000522.4	-1	reviewed	p.D308	1.000	24	0%	44	40.9%	0	-	-	-	-	NULL
CPVL	54504	genome.wustl.edu	37	7	29160509	29160509	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019029.2	-1	reviewed	p.G57*	1.000	120	0%	85	30.6%	16	0%	-	-	-	superfamily_alpha/beta-Hydrolases
CHN2	1124	genome.wustl.edu	37	7	29438091	29438091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000409350	+1	known	p.R77H	0.780	68	0%	70	24.3%	10	0%	unknown(0)	-	-	NULL
CRHR2	1395	genome.wustl.edu	37	7	30693190	30693190	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001883.3	-1	validated	p.W374*	1.000	54	0%	31	19.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ADCYAP1R1	117	genome.wustl.edu	37	7	31124443	31124443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001118.3	+1	reviewed	p.R177H	1.000	133	0%	128	27.3%	0	-	probably_damaging(0.998)	tolerated(0.43)	deleterious(0.488)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
NEUROD6	63974	genome.wustl.edu	37	7	31378022	31378022	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022728.2	-1	provisional	p.Y287	0.724	109	0%	137	27.7%	0	-	-	-	-	NULL
CCDC129	223075	genome.wustl.edu	37	7	31690788	31690788	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194300.2	+1	validated	p.T872	0.000	278	0%	316	33.2%	0	-	-	-	-	NULL
RP9	6100	genome.wustl.edu	37	7	33136969	33136969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203288.1	-1	reviewed	p.R107C	1.000	57	0%	85	44.7%	63	0%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMSmart_ZnF_C2HC
BBS9	27241	genome.wustl.edu	37	7	33644486	33644486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198428.2	+1	reviewed	p.T844I	0.996	120	0%	150	32%	13	0%	benign(0.07)	tolerated(0.13)	neutral(0.258)	NULL
NPSR1	387129	genome.wustl.edu	37	7	34724283	34724283	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207173.1	+1	reviewed	p.Q89	1.000	132	0%	116	25.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ELMO1	9844	genome.wustl.edu	37	7	37172763	37172763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014800.9	-1	reviewed	p.A388V	1.000	159	0%	117	23.1%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ELMO_CED12
ELMO1	9844	genome.wustl.edu	37	7	37262253	37262253	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000433246	-1	known	p.R14H	0.981	120	0%	163	27%	0	-	-	-	-	NULL
ELMO1	9844	genome.wustl.edu	37	7	37298795	37298795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014800.9	-1	reviewed	p.S135I	1.000	124	0%	140	27.9%	0	-	possibly_damaging(0.606)	deleterious(0.02)	deleterious(0.593)	superfamily_ARM repeat
SFRP4	6424	genome.wustl.edu	37	7	37956179	37956179	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000223214	-1	known	p.R9	0.000	23	0%	12	50%	4	0%	-	-	-	NULL
TRGJP2	6972	genome.wustl.edu	37	7	38295975	38295975	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390334	-1	known	p.R8H	0.000	28	0%	32	40.6%	0	-	-	-	-	NULL
TRGV4	6977	genome.wustl.edu	37	7	38393480	38393480	+	Missense_Mutation	SNP	G	G	A	rs139204843	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390345	-1	known	p.R64C	0.002	204	0%	188	27.7%	0	-	benign(0.08)	deleterious(0)	neutral(0.450)	HMMPfam_V-set,superfamily_SSF48726
POU6F2	11281	genome.wustl.edu	37	7	39379288	39379290	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007252.3	+1	reviewed	p.Q190in_frame_del	0.172:0.153:0.157	-	-	-	-	-	-	-	-	-	NULL
CDK13	8621	genome.wustl.edu	37	7	40039016	40039016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003718.4	+1	reviewed	p.R700H	1.000	126	0%	182	28%	23	0%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	superfamily_Protein kinase-like (PK-like)
INHBA	3624	genome.wustl.edu	37	7	41729399	41729399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002192.2	-1	reviewed	p.R377H	1.000	104	0%	133	36.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
GLI3	2737	genome.wustl.edu	37	7	42003962	42003962	+	Missense_Mutation	SNP	G	G	A	rs41305933		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000168.5	-1	reviewed	p.A1570V	1.000	17	0%	44	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GLI3	2737	genome.wustl.edu	37	7	42085072	42085072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000168.5	-1	reviewed	p.G246D	1.000	160	0%	117	11.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SPDYE1	285955	genome.wustl.edu	37	7	44040633	44040633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175064.2	+1	validated	p.K3N	0.052	150	0%	234	28.2%	2	0%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
GCK	2645	genome.wustl.edu	37	7	44184851	44184851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033507.1	-1	reviewed	p.R429C	1.000	5	0.000	8	0.500	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_Hexokinase_2,superfamily_SSF53067
NUDCD3	23386	genome.wustl.edu	37	7	44431998	44431998	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015332.3	-1	reviewed	p.E291	1.000	226	0%	185	26.5%	77	0%	-	-	-	NULL
NPC1L1	29881	genome.wustl.edu	37	7	44573061	44573061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013389.2	-1	reviewed	p.A793V	1.000	24	0%	25	20%	0	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMPfam_Patched,superfamily_SSF82866
NPC1L1	29881	genome.wustl.edu	37	7	44579805	44579805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013389.2	-1	reviewed	p.R64H	0.000	28	0%	29	44.8%	0	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
ZMIZ2	83637	genome.wustl.edu	37	7	44804019	44804019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031449.3	+1	validated	p.C621Y	1.000	9	0.000	36	0.306	91	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-MIZ,superfamily_RING/U-box
MYO1G	64005	genome.wustl.edu	37	7	45004100	45004100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033054.2	-1	validated	p.A849T	0.856	60	0%	55	10.9%	3	0%	benign(0.005)	tolerated(0.77)	neutral(0.001)	HMMPfam_Myosin_TH1
CCM2	83605	genome.wustl.edu	37	7	45077975	45077975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029835.2	+1	reviewed	p.R73C	1.000	136	0%	178	38.2%	36	0%	unknown(0)	deleterious(0.04)	-	NULL
LOC100287196	100287196	genome.wustl.edu	37	7	45144153	45144153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342718.1	+1	model	p.V46I	1.000	52	0%	49	28.6%	71	0%	-	-	-	NULL
ADCY1	107	genome.wustl.edu	37	7	45743057	45743057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021116.2	+1	reviewed	p.A846V	1.000	53	0%	44	22.7%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_CYCc
ADCY1	107	genome.wustl.edu	37	7	45753449	45753449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021116.2	+1	reviewed	p.R1072Q	0.999	66	0%	31	22.6%	2	0%	possibly_damaging(0.488)	tolerated(0.39)	neutral(0.178)	NULL
TNS3	64759	genome.wustl.edu	37	7	47384355	47384355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022748.10	-1	validated	p.R883H	0.000	36	0%	31	12.9%	20	0%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
TNS3	64759	genome.wustl.edu	37	7	47408143	47408143	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022748.10	-1	validated	p.E700	0.959	90	0%	64	34.4%	12	0%	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47876572	47876572	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138295.2	-1	reviewed	p.L1964	0.626	31	0%	18	22.2%	0	-	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47894823	47894823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138295.2	-1	reviewed	p.S1544N	0.995	108	0%	111	24.3%	0	-	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47930346	47930346	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138295.2	-1	reviewed	p.C823	0.139	32	0%	27	14.8%	0	-	-	-	-	HMMPfam_REJ
ABCA13	154664	genome.wustl.edu	37	7	48352754	48352754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152701.3	+1	reviewed	p.V3203I	0.000	38	0%	44	29.5%	0	-	benign(0)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48411863	48411863	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152701.3	+1	reviewed	p.I3634	0.036	282	0%	379	32.2%	0	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48550725	48550725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152701.3	+1	reviewed	p.A4524T	0.960	122	0.8%	117	43.6%	0	-	probably_damaging(0.979)	-	-	NULL
IKZF1	10320	genome.wustl.edu	37	7	50444331	50444331	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006060.3	+1	validated	p.P34H	0.998	88	0%	73	28.8%	0	-	-	-	-	NULL
DDC	1644	genome.wustl.edu	37	7	50537794	50537794	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000790.3	-1	reviewed	p.G373*	1.000	64	0%	100	15%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
GBAS	2631	genome.wustl.edu	37	7	56065091	56065091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001483.1	+1	reviewed	p.R249W	0.992	131	0%	178	27%	165	0.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NIPSNAP
CCT6A	908	genome.wustl.edu	37	7	56125774	56125774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001762.3	+1	reviewed	p.V235M	1.000	28	0%	97	19.6%	250	0%	benign(0.055)	deleterious(0)	neutral(0.448)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
CHCHD2	51142	genome.wustl.edu	37	7	56172109	56172109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016139.2	-1	validated	p.A37V	0.004	12	0%	27	25.9%	487	0%	unknown(0)	tolerated(0.31)	-	NULL
LOC100132308	100132308	genome.wustl.edu	37	7	63020549	63020549	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001715240.2	+1	model	p.C233	1.000	38	0%	35	22.9%	0	-	-	-	-	HMMPfam_Nucleoside_tran
ZNF679	168417	genome.wustl.edu	37	7	63727210	63727210	+	Missense_Mutation	SNP	G	G	T	rs142919190	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153363.2	+1	validated	p.S400I	1.000	55	0%	89	28.1%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF680	340252	genome.wustl.edu	37	7	63981869	63981869	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178558.4	-1	validated	p.L421	0.000	184	0%	256	35.2%	22	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439206	64439206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015852.3	-1	validated	p.R248H	0.992	125	0%	247	12.6%	8	0%	benign(0.009)	deleterious(0)	neutral(0.445)	superfamily_C2H2 and C2HC zinc fingers
ERV3-1	2086	genome.wustl.edu	37	7	64452165	64452165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007253.3	-1	reviewed	p.P414S	0.419	40	0%	77	13%	17	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZNF92	168374	genome.wustl.edu	37	7	64863920	64863920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152626.2	+1	validated	p.S298L	0.000	216	0%	282	25.9%	15	0%	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WBSCR17	64409	genome.wustl.edu	37	7	71130562	71130562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022479.1	+1	reviewed	p.A416V	1.000	71	0%	72	38.9%	14	0%	probably_damaging(1)	tolerated(0.69)	deleterious(0.502)	superfamily_Nucleotide-diphospho-sugar transferases
POM121	9883	genome.wustl.edu	37	7	72416156	72416156	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172020.1	+1	reviewed	p.T922	0.278	33	0%	39	17.9%	16	0%	-	-	-	NULL
CLDN4	1364	genome.wustl.edu	37	7	73246051	73246051	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001305.3	+1	reviewed	p.L174	1.000	18	0%	19	36.8%	536	0.1%	-	-	-	HMMPfam_PMP22_Claudin
NCF1	653361	genome.wustl.edu	37	7	74197317	74197317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000265.4	+1	reviewed	p.A163T	0.992	55	0%	54	18.5%	7	0%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
GTF2IRD2	84163	genome.wustl.edu	37	7	74211567	74211567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173537.2	-1	validated	p.H762Y	0.117	225	0%	354	7.9%	22	0%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74528251	74528251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003795.2	+1	reviewed	p.V54M	0.916	278	0%	463	5.8%	27	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74528281	74528281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003795.2	+1	reviewed	p.A64T	0.648	311	0%	496	16.1%	22	0%	benign(0.171)	tolerated(0.16)	neutral(0.075)	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74563643	74563643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003795.2	+1	reviewed	p.R464C	0.648	270	0%	328	21.6%	7	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RHBDD2	57414	genome.wustl.edu	37	7	75517395	75517395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040456.1	+1	validated	p.A275T	0.000	70	0%	59	39%	201	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
SRRM3	222183	genome.wustl.edu	37	7	75877547	75877547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000388802	+1	known	p.R92Q	1.000	5	0.000	14	0.286	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cwf21
SRCRB4D	136853	genome.wustl.edu	37	7	76019569	76019569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080744.1	-1	provisional	p.R512H	0.998	22	0%	27	33.3%	3	0%	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
DTX2	113878	genome.wustl.edu	37	7	76109984	76109984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102594.1	+1	validated	p.R53H	0.761	16	0%	27	37%	17	0%	benign(0.005)	tolerated(0.31)	neutral(0.027)	HMMPfam_WWE,HMMSmart_SM00678
LOC100288807	100288807	genome.wustl.edu	37	7	76166816	76166816	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342739.1	-1	model	p.S444	0.456	650	0.5%	844	15.5%	0	-	-	-	-	NULL
CCDC146	57639	genome.wustl.edu	37	7	76903056	76903056	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020879.2	+1	validated	p.R407*	0.428	249	0%	240	26.7%	4	0%	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77539623	77539623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127357.1	+1	validated	p.D191Y	1.000	161	0.6%	182	23.1%	22	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GNAI1	2770	genome.wustl.edu	37	7	79842035	79842035	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002069.5	+1	validated	p.R242*	1.000	132	0%	187	26.2%	50	0%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
HGF	3082	genome.wustl.edu	37	7	81332022	81332022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000601.4	-1	reviewed	p.L688I	0.992	204	0%	250	29.6%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PCLO	27445	genome.wustl.edu	37	7	82578875	82578875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033026.5	-1	validated	p.R3677C	1.000	451	0%	448	30.4%	8	0%	probably_damaging(1)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82785531	82785531	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033026.5	-1	validated	p.T142	1.000	97	0%	85	36.5%	1	0%	-	-	-	NULL
GRM3	2913	genome.wustl.edu	37	7	86394651	86394651	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000840.2	+1	reviewed	p.R64*	0.998	338	0%	434	11.3%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
GRM3	2913	genome.wustl.edu	37	7	86394782	86394782	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000840.2	+1	reviewed	p.E107	1.000	466	0%	576	28.6%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ABCB1	5243	genome.wustl.edu	37	7	87170729	87170729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000927.3	-1	reviewed	p.F755L	0.999	291	0%	287	10.8%	8	0%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
RUNDC3B	154661	genome.wustl.edu	37	7	87370886	87370886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138290.2	+1	validated	p.Y224F	1.000	87	0%	89	30.3%	1	0%	benign(0)	tolerated(1)	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87910334	87910334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024636.2	-1	validated	p.V349M	0.000	104	0%	176	13.1%	2	0%	possibly_damaging(0.86)	tolerated(0.17)	neutral(0.392)	HMMPfam_Ferric_reduct
ZNF804B	219578	genome.wustl.edu	37	7	88963217	88963217	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181646.2	+1	provisional	p.H307	0.045	139	0%	154	31.2%	0	-	-	-	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88964396	88964396	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181646.2	+1	provisional	p.S700	0.199	180	0.6%	227	31.7%	0	-	-	-	-	NULL
FZD1	8321	genome.wustl.edu	37	7	90895822	90895822	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003505.1	+1	reviewed	p.L543	1.000	45	0%	27	25.9%	52	0%	-	-	-	HMMPfam_Frizzled
AKAP9	10142	genome.wustl.edu	37	7	91732082	91732082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005751.4	+1	reviewed	p.R3758C	1.000	153	0%	151	37.1%	20	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_PACT_coil_coil
PEX1	5189	genome.wustl.edu	37	7	92119224	92119224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000466.2	-1	reviewed	p.S1147N	1.000	145	0%	123	15.4%	45	0%	probably_damaging(0.998)	tolerated(0.36)	deleterious(0.494)	NULL
PEX1	5189	genome.wustl.edu	37	7	92130836	92130836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000466.2	-1	reviewed	p.I856	1.000	190	0%	179	38.5%	21	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RBM48	84060	genome.wustl.edu	37	7	92164256	92164256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032120.2	+1	validated	p.A330V	0.962	59	0%	96	34.4%	18	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92734794	92734794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017654.2	-1	validated	p.A206V	0.960	314	0%	257	14.4%	0	-	possibly_damaging(0.454)	tolerated(0.11)	neutral(0.420)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92883211	92883211	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017667.2	+1	validated	p.A88	1.000	87	0%	93	19.4%	5	0%	-	-	-	HMMPfam_DUF2450
COL1A2	1278	genome.wustl.edu	37	7	94058728	94058728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000089.3	+1	reviewed	p.V1314L	1.000	54	0%	78	32.1%	525	0%	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	HMMPfam_COLFI,HMMSmart_SM00038
SGCE	8910	genome.wustl.edu	37	7	94232734	94232734	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000428696	-1	known	p.R219H	0.721	108	0%	146	23.3%	55	0%	-	-	-	HMMPfam_Sarcoglycan_2
SGCE	8910	genome.wustl.edu	37	7	94252690	94252690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099401.1	-1	reviewed	p.R137H	1.000	81	0%	79	13.9%	22	0%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMSmart_SM00736,HMMPfam_Sarcoglycan_2,superfamily_Cadherin-like
PDK4	5166	genome.wustl.edu	37	7	95224411	95224411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002612.3	-1	reviewed	p.A66T	0.990	106	0.9%	112	33%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
LMTK2	22853	genome.wustl.edu	37	7	97823641	97823641	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014916.3	+1	reviewed	p.D1288	0.984	45	0%	45	26.7%	31	0%	-	-	-	NULL
TECPR1	25851	genome.wustl.edu	37	7	97852982	97852982	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015395.1	-1	provisional	p.C913*	0.999	21	0%	32	40.6%	13	0%	-	-	-	HMMSmart_SM00694
TRRAP	8295	genome.wustl.edu	37	7	98524886	98524886	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000456197	+1	known	p.A739V	0.910	98	0%	97	41.2%	8	0%	-	-	-	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98529153	98529153	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000456197	+1	known	p.T954I	1.000	41	0%	55	27.3%	17	0%	-	-	-	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98547820	98547820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003496.2	+1	validated	p.R1732C	1.000	164	0%	189	32.8%	24	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98581897	98581897	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000456197	+1	known	p.S2783L	0.746	233	0%	279	28.3%	43	2.3%	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like
SMURF1	57154	genome.wustl.edu	37	7	98655066	98655066	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020429.1	-1	reviewed	p.A104	1.000	100	0%	115	28.7%	16	0%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ARPC1A	10552	genome.wustl.edu	37	7	98941967	98941967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006409.2	+1	reviewed	p.R74H	1.000	43	0%	73	31.5%	207	0%	possibly_damaging(0.769)	deleterious(0.03)	deleterious(0.650)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BUD31	8896	genome.wustl.edu	37	7	99017026	99017026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003910.3	+1	validated	p.E133K	1.000	23	0%	49	14.3%	325	0%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	HMMPfam_G10
PTCD1	26024	genome.wustl.edu	37	7	99017736	99017736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015545.2	-1	validated	p.G653S	1.000	54	0%	96	38.5%	30	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
ZNF789	285989	genome.wustl.edu	37	7	99084330	99084330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_213603.2	+1	validated	p.A166V	0.000	173	0%	219	31.5%	10	0%	benign(0.002)	tolerated(0.54)	neutral(0.007)	NULL
ZNF394	84124	genome.wustl.edu	37	7	99091600	99091600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032164.2	-1	provisional	p.P413L	0.998	100	0%	212	12.7%	25	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
ZNF655	79027	genome.wustl.edu	37	7	99169354	99169354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083956.1	+1	reviewed	p.Q60H	1.000	28	0%	26	34.6%	4	0%	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
ZKSCAN1	7586	genome.wustl.edu	37	7	99631638	99631638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003439.1	+1	validated	p.L504M	0.990	119	0%	203	19.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AP4M1	9179	genome.wustl.edu	37	7	99704485	99704485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004722.3	+1	reviewed	p.A448T	0.983	6	0.000	10	0.500	39	2.5%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Adap_comp_sub,superfamily_AP50
PVRIG	79037	genome.wustl.edu	37	7	99818615	99818615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024070.3	+1	validated	p.R241H	0.005	82	0%	53	24.5%	4	0%	benign(0.393)	-	-	NULL
SPDYE3	441272	genome.wustl.edu	37	7	99917283	99917283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004351.4	+1	validated	p.R104H	0.000	200	0%	163	32.5%	9	0%	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
PILRA	29992	genome.wustl.edu	37	7	99972012	99972012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013439.2	+1	reviewed	p.Q137R	0.002	84	0%	150	30%	4	0%	benign(0.039)	tolerated(0.11)	neutral(0.274)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GIGYF1	64599	genome.wustl.edu	37	7	100282195	100282195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022574.4	-1	validated	p.Y503N	1.000	13	0%	27	25.9%	21	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF
GIGYF1	64599	genome.wustl.edu	37	7	100284395	100284395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022574.4	-1	validated	p.A191T	0.973	9	0.000	14	0.286	25	4%	possibly_damaging(0.792)	tolerated(0.36)	neutral(0.317)	NULL
ZAN	7455	genome.wustl.edu	37	7	100357461	100357461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003386.1	+1	reviewed	p.R1230H	0.009	6	0.000	31	0.194	0	-	possibly_damaging(0.592)	-	-	HMMPfam_VWD,HMMSmart_SM00216
SRRT	51593	genome.wustl.edu	37	7	100483923	100483923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015908.5	+1	validated	p.R505H	1.000	39	0%	63	23.8%	231	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRRT	51593	genome.wustl.edu	37	7	100486181	100486181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000445337	+1	known	p.V116I	0.000	35	0%	67	34.3%	193	0%	unknown(0)	-	-	HMMPfam_ARS2
MUC17	140453	genome.wustl.edu	37	7	100676720	100676720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040105.1	+1	provisional	p.G675C	0.000	718	0%	672	31.8%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684905	100684905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040105.1	+1	provisional	p.S3403N	0.000	294	0%	317	30.6%	0	-	probably_damaging(0.99)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100696280	100696280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040105.1	+1	provisional	p.E4373K	0.893	97	0%	127	14.2%	0	-	unknown(0)	-	-	NULL
PLOD3	8985	genome.wustl.edu	37	7	100859600	100859600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001084.4	-1	reviewed	p.V116M	0.986	29	0%	39	17.9%	91	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FIS1	51024	genome.wustl.edu	37	7	100884133	100884133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016068.2	-1	validated	p.A78V	0.999	23	0%	53	35.8%	316	0%	unknown(0)	-	-	superfamily_SSF48452
CUX1	1523	genome.wustl.edu	37	7	101845199	101845199	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181552.2	+1	reviewed	p.S874	0.033	21	0%	27	44.4%	10	0%	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101845311	101845311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181552.2	+1	reviewed	p.P912S	1.000	40	0%	68	29.4%	9	0%	probably_damaging(0.998)	tolerated(0.52)	deleterious(0.483)	NULL
LOC100289561	100289561	genome.wustl.edu	37	7	102020940	102020940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342746.1	+1	model	p.A88S	0.052	387	0%	664	24.8%	7	0%	-	-	-	NULL
POLR2J	5439	genome.wustl.edu	37	7	102114127	102114127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006234.4	-1	reviewed	p.A108V	1.000	14	0%	17	29.4%	261	0%	benign(0.062)	deleterious(0.02)	neutral(0.387)	superfamily_RBP11-like subunits of RNA polymerase
NFE4	58160	genome.wustl.edu	37	7	102616641	102616641	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085386.1	+1	reviewed	p.S173	0.042	368	0%	279	30.8%	0	-	-	-	-	NULL
DNAJC2	27000	genome.wustl.edu	37	7	102953402	102953402	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014377.1	-1	reviewed	p.R595*	1.000	582	0%	452	29.9%	66	0%	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
PIK3CG	5294	genome.wustl.edu	37	7	106508825	106508825	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002649.2	+1	reviewed	p.R273	0.429	83	0%	68	10.3%	0	-	-	-	-	HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like
PIK3CG	5294	genome.wustl.edu	37	7	106508991	106508991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002649.2	+1	reviewed	p.C329R	1.000	85	0%	69	21.7%	0	-	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	NULL
DUS4L	11062	genome.wustl.edu	37	7	107207525	107207525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181581.1	+1	validated	p.D4N	0.004	89	0%	133	27.8%	22	0%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
LAMB1	3912	genome.wustl.edu	37	7	107600269	107600269	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002291.2	-1	reviewed	p.C775	0.929	41	0%	39	43.6%	36	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
LAMB1	3912	genome.wustl.edu	37	7	107601684	107601684	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002291.2	-1	reviewed	p.S692	0.000	121	0%	126	11.9%	40	0%	-	-	-	NULL
LAMB4	22798	genome.wustl.edu	37	7	107696257	107696257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007356.2	-1	validated	p.A1192V	0.000	117	0%	140	30.7%	0	-	possibly_damaging(0.446)	tolerated(0.07)	neutral(0.465)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111372325	111372325	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000445943	-1	known	p.R1837*	0.654	38	2.6%	36	38.9%	3	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111381621	111381621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014705.3	-1	reviewed	p.G1623S	1.000	29	0%	47	14.9%	4	0%	benign(0.194)	tolerated(0.32)	neutral(0.042)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111395638	111395638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014705.3	-1	reviewed	p.T1441M	1.000	110	0%	136	36.8%	3	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111540513	111540513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014705.3	-1	reviewed	p.R466K	1.000	70	0%	73	21.9%	2	0%	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112424147	112424147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022484.4	-1	validated	p.G245E	1.000	614	0%	779	12.2%	8	0%	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519436	113519436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002711.3	-1	reviewed	p.A571T	0.000	221	0%	226	35%	0	-	benign(0)	tolerated(1)	-	NULL
TES	26136	genome.wustl.edu	37	7	115889244	115889244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015641.2	+1	reviewed	p.T95M	1.000	112	0%	120	32.5%	211	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_PET
TES	26136	genome.wustl.edu	37	7	115891999	115891999	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000393484	+1	known	p.A83V	0.979	150	0%	209	29.7%	241	0%	-	-	-	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MET	4233	genome.wustl.edu	37	7	116371755	116371755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127500.1	+1	reviewed	p.R412C	0.601	206	0%	263	32.3%	4	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MET	4233	genome.wustl.edu	37	7	116414995	116414995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127500.1	+1	reviewed	p.D1048G	1.000	234	0%	211	35.1%	11	0%	probably_damaging(0.992)	tolerated(0.18)	deleterious(0.504)	NULL
ASZ1	136991	genome.wustl.edu	37	7	117067566	117067566	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_023315.1	-1	validated	NULL	0.849	37	0%	43	37.2%	0	-	-	-	-	-
CFTR	1080	genome.wustl.edu	37	7	117230465	117230465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000492.3	+1	reviewed	p.V580I	1.000	127	0%	135	25.9%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
WNT16	51384	genome.wustl.edu	37	7	120979352	120979352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_057168.1	+1	reviewed	p.R351C	0.999	49	0%	96	34.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_wnt,HMMSmart_SM00097
PTPRZ1	5803	genome.wustl.edu	37	7	121616870	121616870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002851.2	+1	reviewed	p.A195V	0.913	254	0%	253	30%	0	-	possibly_damaging(0.649)	deleterious(0.04)	deleterious(0.577)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
CADPS2	93664	genome.wustl.edu	37	7	121965604	121965604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017954.10	-1	reviewed	p.C1215Y	0.998	23	0%	34	26.5%	12	0%	possibly_damaging(0.947)	tolerated(0.2)	neutral(0.440)	NULL
CADPS2	93664	genome.wustl.edu	37	7	122194638	122194638	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017954.10	-1	reviewed	p.R481*	0.992	101	1%	100	21%	2	0%	-	-	-	superfamily_PH domain-like
LMOD2	442721	genome.wustl.edu	37	7	123302514	123302514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207163.1	+1	validated	p.L292F	0.991	262	0%	330	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tropomodulin,superfamily_RNI-like
HYAL4	23553	genome.wustl.edu	37	7	123517095	123517095	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012269.2	+1	reviewed	p.A444	0.847	173	0%	191	24.6%	0	-	-	-	-	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2
GCC1	79571	genome.wustl.edu	37	7	127222631	127222631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024523.5	-1	reviewed	p.R589W	1.000	30	0%	60	45%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC4	64101	genome.wustl.edu	37	7	127670198	127670198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022143.4	-1	validated	p.A166T	1.000	27	0%	13	30.8%	5	0%	possibly_damaging(0.838)	tolerated(0.05)	deleterious(0.665)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SND1	27044	genome.wustl.edu	37	7	127731927	127731927	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014390.2	+1	validated	p.S887	0.884	173	0%	199	31.2%	816	0.4%	-	-	-	HMMPfam_SNase,superfamily_Staphylococal_nuclease_OB-fold
RBM28	55131	genome.wustl.edu	37	7	127954937	127954937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018077.2	-1	reviewed	p.A642V	0.000	476	0.2%	385	32.7%	32	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128447455	128447455	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000494552	+1	known	p.C364F	0.690	8	0.000	10	0.700	0	-	-	-	-	superfamily_Prefoldin
CCDC136	64753	genome.wustl.edu	37	7	128450375	128450375	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000494552	+1	known	p.P538L	0.000	28	0%	69	31.9%	1	0%	-	-	-	NULL
AHCYL2	23382	genome.wustl.edu	37	7	129019536	129019536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015328.2	+1	validated	p.R141C	1.000	148	0%	158	13.9%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KLHDC10	23008	genome.wustl.edu	37	7	129770576	129770576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014997.2	+1	validated	p.R440H	1.000	130	0%	192	9.9%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COPG2	26958	genome.wustl.edu	37	7	130352365	130352365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000445977	-1	known	p.S16F	1.000	73	0%	101	20.8%	13	0%	possibly_damaging(0.459)	tolerated(0.7)	neutral(0.152)	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131913111	131913111	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020911.1	-1	validated	p.N574	0.980	49	0%	31	41.9%	1	0%	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	132193204	132193204	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020911.1	-1	validated	p.T83	0.967	69	0%	64	17.2%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ENSG00000232856	0	genome.wustl.edu	37	7	132719498	132719498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000448615	-1	known	p.E164K	0.999	76	0%	71	25.4%	2364	0%	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	superfamily_eEF1-gamma domain
ENSG00000232856	0	genome.wustl.edu	37	7	132719840	132719840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000448615	-1	known	p.A50T	1.000	119	0%	82	40.2%	2058	0%	benign(0.006)	tolerated(0.3)	neutral(0.029)	HMMPfam_EF1G,superfamily_eEF1-gamma domain
BPGM	669	genome.wustl.edu	37	7	134346628	134346628	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001724.4	+1	reviewed	p.P123	0.013	153	0%	191	34.6%	54	0%	-	-	-	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
WDR91	29062	genome.wustl.edu	37	7	134871735	134871735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014149.3	-1	validated	p.V690I	0.008	161	0%	179	29.6%	32	0%	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_WD40 repeat-like
WDR91	29062	genome.wustl.edu	37	7	134879799	134879799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014149.3	-1	validated	p.V428I	1.000	29	0%	42	11.9%	36	0%	possibly_damaging(0.816)	tolerated(0.63)	neutral(0.312)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NUP205	23165	genome.wustl.edu	37	7	135323423	135323423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015135.2	+1	validated	p.P1795L	0.537	272	0%	295	36.3%	83	0%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
SLC13A4	26266	genome.wustl.edu	37	7	135386493	135386493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012450.2	-1	validated	p.P216S	0.953	47	0%	41	17.1%	1	0%	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_Na_sulph_symp
TRIM24	8805	genome.wustl.edu	37	7	138255645	138255645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015905.2	+1	reviewed	p.T592M	1.000	217	0%	246	35%	30	0%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	NULL
SVOPL	136306	genome.wustl.edu	37	7	138333798	138333798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001139456.1	-1	validated	p.V207I	0.087	68	0%	38	50%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ATP6V0A4	50617	genome.wustl.edu	37	7	138417717	138417717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020632.2	-1	reviewed	p.V605I	0.000	124	0%	143	14.7%	1	0%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_V_ATPase_I
KIAA1549	57670	genome.wustl.edu	37	7	138554378	138554378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020910.2	-1	validated	p.R1511*	0.998	8	0.000	9	0.667	17	0%	-	-	-	NULL
ZC3HAV1	56829	genome.wustl.edu	37	7	138768661	138768661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020119.3	-1	reviewed	p.L188F	0.232	125	0%	164	33.5%	12	0%	benign(0.038)	tolerated(0.15)	neutral(0.243)	HMMPfam_zf-CCCH
LUC7L2	51631	genome.wustl.edu	37	7	139094365	139094366	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016019.2	+1	validated	p.R252fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_LUC7
AGK	55750	genome.wustl.edu	37	7	141301081	141301081	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018238.3	+1	validated	e4+1	1.000	196	0%	154	30.5%	0	-	-	-	-	-
AGK	55750	genome.wustl.edu	37	7	141341096	141341096	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018238.3	+1	validated	p.E259*	0.856	303	0%	301	39.5%	25	0%	-	-	-	NULL
KIAA1147	57189	genome.wustl.edu	37	7	141366103	141366103	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080392.1	-1	provisional	p.G268	0.130	91	0%	68	67.6%	24	0%	-	-	-	HMMPfam_DUF2347
OR9A4	130075	genome.wustl.edu	37	7	141619594	141619594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001656.1	+1	provisional	p.R307C	0.001	339	0%	409	27.9%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	superfamily_Family A G protein-coupled receptor-like
MGAM	8972	genome.wustl.edu	37	7	141752620	141752620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004668.2	+1	reviewed	p.V999I	0.010	177	0%	258	33.3%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
MGAM	8972	genome.wustl.edu	37	7	141785744	141785744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000475668	+1	known	p.R2208W	1.000	281	0%	303	10.6%	1	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
PRSS58	136541	genome.wustl.edu	37	7	141952333	141952333	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001317.2	-1	reviewed	p.L179	0.803	240	0%	212	30.2%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
TRBV4-2	28616	genome.wustl.edu	37	7	142045733	142045733	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390392	+1	known	p.C87	0.000	538	0%	502	23.7%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBJ2-2	28628	genome.wustl.edu	37	7	142494244	142494244	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390413	+1	known	p.R1*	0.013	17	0%	22	36.4%	0	-	-	-	-	NULL
TRPV6	55503	genome.wustl.edu	37	7	142569473	142569473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018646.2	-1	validated	p.E722G	0.655	90	0%	86	32.6%	21	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
CASP2	835	genome.wustl.edu	37	7	143001855	143001855	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032982.2	+1	reviewed	p.H402	0.842	136	0%	166	32.5%	89	0%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CLCN1	1180	genome.wustl.edu	37	7	143048708	143048708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000083.2	+1	reviewed	p.H873Y	1.000	39	0%	78	26.9%	0	-	benign(0.067)	tolerated(0.99)	neutral(0.004)	NULL
TAS2R60	338398	genome.wustl.edu	37	7	143141288	143141288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177437.1	+1	provisional	p.A248V	0.001	320	0%	534	34.5%	0	-	possibly_damaging(0.701)	tolerated(0.07)	deleterious(0.571)	HMMPfam_TAS2R,superfamily_SSF81321
OR2A5	393046	genome.wustl.edu	37	7	143748162	143748162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012365.1	+1	provisional	p.A223V	0.000	261	0.4%	227	32.6%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A14	135941	genome.wustl.edu	37	7	143826624	143826624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001659.1	+1	provisional	p.C140Y	0.696	291	0%	265	13.2%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF5	7984	genome.wustl.edu	37	7	144068410	144068410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005435.3	+1	reviewed	p.A1230T	0.986	341	0%	405	15.6%	20	0%	benign(0)	tolerated(1)	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CUL1	8454	genome.wustl.edu	37	7	148427326	148427326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003592.2	+1	validated	p.A38T	1.000	190	0%	256	36.3%	61	0%	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL1	8454	genome.wustl.edu	37	7	148487466	148487466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003592.2	+1	validated	p.T580M	0.998	112	0%	120	12.5%	74	0%	benign(0.026)	deleterious(0.04)	neutral(0.350)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
ZNF786	136051	genome.wustl.edu	37	7	148777692	148777692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152411.3	-1	validated	p.V46I	0.002	44	0%	83	22.9%	5	0%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF425	155054	genome.wustl.edu	37	7	148801709	148801709	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001661.2	-1	validated	p.E418	0.642	80	0%	116	31.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KRBA1	84626	genome.wustl.edu	37	7	149420839	149420839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000255992	+1	known	p.V263I	0.000	13	0%	21	33.3%	4	0%	possibly_damaging(0.664)	tolerated(0.15)	deleterious(0.476)	NULL
ZNF467	168544	genome.wustl.edu	37	7	149467619	149467619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207336.1	-1	provisional	p.A21T	1.000	21	0%	41	43.9%	3	0%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
ZNF862	643641	genome.wustl.edu	37	7	149557917	149557917	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099220.1	+1	provisional	p.E556	0.997	64	0%	79	13.9%	1	0%	-	-	-	NULL
GIMAP1	170575	genome.wustl.edu	37	7	150417540	150417540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130759.2	+1	reviewed	p.V150I	0.036	83	0%	65	32.3%	0	-	possibly_damaging(0.698)	tolerated(0.13)	deleterious(0.504)	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases
NOS3	4846	genome.wustl.edu	37	7	150704023	150704023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000603.4	+1	reviewed	p.V623M	1.000	20	0%	56	23.2%	0	-	possibly_damaging(0.595)	tolerated(0.1)	deleterious(0.492)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
ASIC3	9311	genome.wustl.edu	37	7	150746413	150746413	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020321.2	+1	reviewed	p.A147	0.373	23	0%	33	36.4%	1	0%	-	-	-	HMMPfam_ASC
ASB10	136371	genome.wustl.edu	37	7	150878462	150878462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142459.1	-1	reviewed	p.A268V	1.000	7	0.000	19	0.737	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ABCF2	10061	genome.wustl.edu	37	7	150911234	150911234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005692.3	-1	reviewed	p.K593R	1.000	110	0%	149	40.9%	126	0%	benign(0.164)	tolerated(0.91)	neutral(0.015)	superfamily_SSF52540
SMARCD3	6604	genome.wustl.edu	37	7	150936544	150936544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003801.1	-1	reviewed	p.R446W	1.000	17	0%	21	38.1%	17	5.8%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
GALNTL5	168391	genome.wustl.edu	37	7	151704920	151704920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145292.3	+1	validated	p.A306V	1.000	151	0%	298	11.7%	0	-	possibly_damaging(0.807)	deleterious(0)	deleterious(0.748)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151854873	151854873	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000360104	-1	known	p.G1442R	0.989	38	0%	28	42.9%	17	0%	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151860426	151860426	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000360104	-1	known	p.D918N	0.128	654	0%	568	12.7%	19	0%	-	-	-	NULL
DPP6	1804	genome.wustl.edu	37	7	154379754	154379754	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000406326	+1	known	p.S341T	0.921	131	0%	119	35.3%	0	-	unknown(0)	-	-	NULL
RBM33	155435	genome.wustl.edu	37	7	155473522	155473522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053043.2	+1	validated	p.V163M	1.000	121	0%	154	31.2%	19	0%	benign(0.108)	tolerated(0.23)	neutral(0.050)	NULL
RBM33	155435	genome.wustl.edu	37	7	155534604	155534604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053043.2	+1	validated	p.A714V	0.995	201	0%	206	33.5%	12	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RNF32	140545	genome.wustl.edu	37	7	156469039	156469039	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000311822	+1	known	p.S301	0.001	50	0%	39	30.8%	5	0%	-	-	-	NULL
NOM1	64434	genome.wustl.edu	37	7	156743249	156743249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138400.1	+1	provisional	p.A273V	0.001	20	0%	26	46.2%	13	0%	benign(0.113)	tolerated(0.28)	neutral(0.041)	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158457372	158457372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017760.5	-1	validated	p.R517H	1.000	232	0%	200	36.5%	48	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
NCAPG2	54892	genome.wustl.edu	37	7	158482637	158482637	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017760.5	-1	validated	p.D182	0.666	89	0%	106	33%	33	0%	-	-	-	NULL
ESYT2	57488	genome.wustl.edu	37	7	158534267	158534267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000429474	-1	known	p.S515Y	0.976	52	0%	35	14.3%	61	0%	unknown(0)	tolerated(0.06)	-	NULL
ESYT2	57488	genome.wustl.edu	37	7	158534367	158534367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020728.2	-1	validated	p.P699fs	0.978	-	-	-	-	-	-	-	-	-	NULL
WDR60	55112	genome.wustl.edu	37	7	158698777	158698777	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018051.4	+1	validated	p.K485	1.000	52	0%	61	27.9%	13	0%	-	-	-	superfamily_WD40 repeat-like
C8orf42	157695	genome.wustl.edu	37	8	442447	442447	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175075.3	-1	validated	p.R170	0.000	17	0%	28	28.6%	10	0%	-	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1616639	1616639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004745.3	+1	reviewed	p.P572L	0.877	11	0%	12	33.3%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2040212	2040212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003970.2	+1	validated	p.N623D	1.000	214	0%	160	10%	0	-	benign(0.083)	tolerated(0.62)	neutral(0.010)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MYOM2	9172	genome.wustl.edu	37	8	2041850	2041850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003970.2	+1	validated	p.A686V	1.000	117	0%	105	32.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CSMD1	64478	genome.wustl.edu	37	8	3076850	3076850	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033225.5	-1	validated	p.S1534	0.021	38	0%	35	31.4%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3081368	3081368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033225.5	-1	validated	p.T1457M	0.993	82	0%	93	12.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3351155	3351155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033225.5	-1	validated	p.V481I	0.995	40	0%	56	26.8%	0	-	possibly_damaging(0.68)	tolerated(0.55)	neutral(0.249)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MCPH1	79648	genome.wustl.edu	37	8	6302852	6302852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024596.3	+1	reviewed	p.G537*	0.001	168	0%	165	12.7%	28	0%	-	-	-	NULL
SPAG11B	10407	genome.wustl.edu	37	8	7308297	7308297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_058201.2	-1	reviewed	p.V114I	0.000	134	0%	194	16%	0	-	possibly_damaging(0.792)	tolerated(0.28)	neutral(0.329)	HMMPfam_Defensin_beta
DEFB106B	503841	genome.wustl.edu	37	8	7340190	7340190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040704.1	-1	reviewed	p.A45D	0.003	480	0%	346	22.8%	0	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
RP1L1	94137	genome.wustl.edu	37	8	10465298	10465298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178857.5	-1	validated	p.P2104S	0.000	612	0.2%	505	24.6%	7	0%	unknown(0)	tolerated(0.22)	-	HMMPfam_S-antigen
RP1L1	94137	genome.wustl.edu	37	8	10474043	10474043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178857.5	-1	validated	p.H222Y	0.034	30	0%	47	36.2%	0	-	benign(0.017)	tolerated(0.91)	neutral(0.001)	HMMPfam_DCX,superfamily_SSF89837
USP17L7	392197	genome.wustl.edu	37	8	11989954	11989954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000416902	-1	known	p.S522I	0.039	14	0%	27	55.6%	0	-	-	-	-	NULL
FAM86B2	653333	genome.wustl.edu	37	8	12285204	12285204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001137610.1	-1	predicted	p.R285H	1.000	39	0%	41	24.4%	1	0%	benign(0.073)	deleterious(0.02)	neutral(0.388)	HMMPfam_Methyltransf_16,superfamily_SSF53335
LONRF1	91694	genome.wustl.edu	37	8	12586535	12586535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152271.3	-1	provisional	p.V629M	1.000	162	0%	203	30%	28	0%	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	HMMPfam_LON,HMMSmart_SM00464
SGCZ	137868	genome.wustl.edu	37	8	14181689	14181689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139167.2	-1	reviewed	p.T87A	1.000	175	0%	145	33.8%	0	-	possibly_damaging(0.646)	tolerated(0.28)	neutral(0.258)	HMMPfam_Sarcoglycan_1
MTMR7	9108	genome.wustl.edu	37	8	17159724	17159724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004686.4	-1	reviewed	p.Y520C	1.000	373	0%	377	28.9%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17611730	17611730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001924.2	-1	reviewed	p.K529N	0.785	193	0%	257	35.8%	8	0%	benign(0.259)	deleterious(0)	deleterious(0.472)	NULL
PCM1	5108	genome.wustl.edu	37	8	17823962	17823962	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006197.3	+1	validated	p.W1067*	1.000	183	0%	178	27.5%	50	0%	-	-	-	NULL
NAT2	10	genome.wustl.edu	37	8	18258145	18258145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000015.2	+1	reviewed	p.T211M	0.000	244	0%	249	26.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
CSGALNACT1	55790	genome.wustl.edu	37	8	19263452	19263452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130518.1	-1	validated	p.R480C	1.000	203	0%	174	33.9%	12	0%	probably_damaging(0.986)	tolerated(0.18)	deleterious(0.490)	HMMPfam_CHGN,superfamily_SSF53448
CSGALNACT1	55790	genome.wustl.edu	37	8	19277950	19277950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130518.1	-1	validated	p.R345C	1.000	287	0%	283	11%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CHGN,superfamily_SSF53448
CSGALNACT1	55790	genome.wustl.edu	37	8	19363117	19363117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130518.1	-1	validated	p.R77W	0.999	80	0%	55	30.9%	1	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_CHGN
SLC18A1	6570	genome.wustl.edu	37	8	20005147	20005147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135691.2	-1	validated	p.A433T	0.986	97	0%	109	28.4%	0	-	possibly_damaging(0.833)	deleterious(0)	deleterious(0.762)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LZTS1	11178	genome.wustl.edu	37	8	20110814	20110814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021020.2	-1	reviewed	p.A210T	0.977	39	0%	30	43.3%	0	-	probably_damaging(0.953)	deleterious(0.03)	deleterious(0.761)	NULL
XPO7	23039	genome.wustl.edu	37	8	21861513	21861513	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100161.1	+1	validated	p.R1057*	1.000	77	0%	84	25%	113	0%	-	-	-	NULL
EPB49	2039	genome.wustl.edu	37	8	21927808	21927808	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114135.2	+1	validated	p.T189	0.001	25	0%	61	26.2%	128	0%	-	-	-	NULL
FAM160B2	64760	genome.wustl.edu	37	8	21956814	21956814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022749.5	+1	validated	p.A365V	1.000	5	0.000	12	0.417	15	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_RAI16-like
SLC39A14	23516	genome.wustl.edu	37	8	22265925	22265925	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128431.2	+1	validated	p.L125	1.000	94	0%	131	27.5%	10	0%	-	-	-	NULL
KIAA1967	57805	genome.wustl.edu	37	8	22473352	22473352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021174.4	+1	validated	p.R512H	0.647	22	0%	40	30%	65	0%	possibly_damaging(0.744)	tolerated(0.09)	deleterious(0.570)	NULL
EGR3	1960	genome.wustl.edu	37	8	22548734	22548734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004430.2	-1	reviewed	p.A139V	1.000	8	0.000	16	0.312	0	-	benign(0.017)	tolerated(0.12)	neutral(0.261)	NULL
RHOBTB2	23221	genome.wustl.edu	37	8	22874851	22874851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015178.2	+1	validated	p.R685C	1.000	43	0%	47	23.4%	16	6.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CHMP7	91782	genome.wustl.edu	37	8	23116593	23116593	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152272.3	+1	validated	p.Q358	1.000	169	0%	223	12.6%	43	0%	-	-	-	HMMPfam_Snf7
LOXL2	4017	genome.wustl.edu	37	8	23177406	23177406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002318.2	-1	reviewed	p.A488T	1.000	38	0%	39	20.5%	58	0%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
LOXL2	4017	genome.wustl.edu	37	8	23186055	23186055	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002318.2	-1	reviewed	p.G330	0.088	71	0%	44	31.8%	40	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
SLC25A37	51312	genome.wustl.edu	37	8	23423725	23423725	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016612.2	+1	provisional	p.R105	0.295	113	0%	138	29%	13	0%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
STC1	6781	genome.wustl.edu	37	8	23702452	23702452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003155.2	-1	reviewed	p.S192I	1.000	147	0%	153	37.3%	99	0%	benign(0.035)	tolerated(0.09)	neutral(0.298)	HMMPfam_Stanniocalcin
ADAM7	8756	genome.wustl.edu	37	8	24324411	24324411	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000380789	+1	known	p.P163	0.000	246	0%	248	33.1%	0	-	-	-	-	NULL
NEFM	4741	genome.wustl.edu	37	8	24775323	24775323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005382.2	+1	reviewed	p.G652D	0.000	231	0%	222	29.7%	0	-	possibly_damaging(0.722)	tolerated(0.16)	neutral(0.322)	NULL
DOCK5	80005	genome.wustl.edu	37	8	25249454	25249454	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024940.6	+1	validated	p.R1466	1.000	76	0%	86	30.2%	4	0%	-	-	-	NULL
PPP2R2A	5520	genome.wustl.edu	37	8	26218493	26218493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002717.3	+1	reviewed	p.P155S	1.000	123	0%	142	29.6%	74	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40 repeat-like
ADRA1A	148	genome.wustl.edu	37	8	26627941	26627941	+	Missense_Mutation	SNP	G	G	A	rs1496121	byCluster	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033303.3	-1	reviewed	p.R376C	1.000	410	0%	432	29.6%	0	-	benign(0.364)	deleterious(0.04)	neutral(0.465)	NULL
STMN4	81551	genome.wustl.edu	37	8	27099987	27099987	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030795.2	-1	provisional	p.E12	1.000	24	0%	25	32%	0	-	-	-	-	NULL
TRIM35	23087	genome.wustl.edu	37	8	27155995	27155995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_171982.3	-1	validated	p.A173T	0.997	123	0%	123	11.4%	8	0%	benign(0.013)	tolerated(0.31)	neutral(0.028)	NULL
PTK2B	2185	genome.wustl.edu	37	8	27297846	27297846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004103.3	+1	reviewed	p.R643W	1.000	67	0%	52	57.7%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CLU	1191	genome.wustl.edu	37	8	27462625	27462625	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001831.2	-1	reviewed	p.R267	0.001	64	0%	58	27.6%	9	0%	-	-	-	HMMPfam_Clusterin,HMMSmart_CLb
SCARA3	51435	genome.wustl.edu	37	8	27509084	27509084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016240.2	+1	reviewed	p.R56W	1.000	81	0%	92	41.3%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
C8orf80	389643	genome.wustl.edu	37	8	27886850	27886850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010906.1	-1	provisional	p.R696Q	0.981	35	0%	35	48.6%	0	-	benign(0.066)	tolerated(0.09)	neutral(0.301)	NULL
C8orf80	389643	genome.wustl.edu	37	8	27927088	27927088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010906.1	-1	provisional	p.S77I	0.993	131	0%	150	27.3%	0	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ELP3	55140	genome.wustl.edu	37	8	27957431	27957431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018091.5	+1	validated	p.R69H	1.000	112	0%	158	26.6%	57	0%	possibly_damaging(0.522)	deleterious(0)	deleterious(0.621)	superfamily_Radical SAM enzymes
EXTL3	2137	genome.wustl.edu	37	8	28574109	28574109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001440.2	+1	provisional	p.R178L	1.000	75	0%	139	28.8%	22	0%	possibly_damaging(0.504)	tolerated(0.22)	neutral(0.211)	NULL
WRN	7486	genome.wustl.edu	37	8	31024676	31024676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000553.4	+1	reviewed	p.C1374F	0.014	98	0%	125	31.2%	19	0%	benign(0.311)	tolerated(0.37)	neutral(0.116)	NULL
NRG1	3084	genome.wustl.edu	37	8	32600255	32600255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013959.3	+1	reviewed	p.T287M	1.000	293	0%	257	34.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_EGF/Laminin
MAK16	84549	genome.wustl.edu	37	8	33346099	33346099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032509.3	+1	validated	p.S43T	0.983	254	0%	296	25%	13	0%	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_Mak16
UNC5D	137970	genome.wustl.edu	37	8	35425743	35425743	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080872.2	+1	validated	p.A150	0.039	132	0%	136	25.7%	0	-	-	-	-	superfamily_Immunoglobulin
UNC5D	137970	genome.wustl.edu	37	8	35583721	35583721	+	Missense_Mutation	SNP	G	G	A	rs190579280	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080872.2	+1	validated	p.R452Q	1.000	164	0%	159	23.9%	0	-	possibly_damaging(0.902)	tolerated(0.35)	neutral(0.378)	NULL
KCNU1	157855	genome.wustl.edu	37	8	36662775	36662775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031836.2	+1	validated	p.A147V	0.905	36	0%	60	21.7%	0	-	benign(0.001)	tolerated(0.96)	-	HMMPfam_Ion_trans,superfamily_SSF81324
KCNU1	157855	genome.wustl.edu	37	8	36768589	36768589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031836.2	+1	validated	p.G825R	0.000	84	0%	105	15.2%	0	-	benign(0.41)	tolerated(0.33)	neutral(0.157)	NULL
BRF2	55290	genome.wustl.edu	37	8	37702088	37702088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018310.2	-1	reviewed	p.R394C	1.000	19	0%	38	23.7%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37732353	37732353	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002814.2	-1	validated	p.S434	0.967	162	0%	205	33.7%	18	0%	-	-	-	NULL
GOT1L1	137362	genome.wustl.edu	37	8	37792608	37792608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152413.2	-1	validated	p.G352D	0.997	32	0%	48	33.3%	0	-	benign(0.15)	deleterious(0)	neutral(0.458)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
DDHD2	23259	genome.wustl.edu	37	8	38109450	38109450	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015214.2	+1	validated	p.P455	0.000	90	0%	141	41.8%	39	2.5%	-	-	-	NULL
TM2D2	83877	genome.wustl.edu	37	8	38849059	38849059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_078473.2	-1	validated	p.T146I	1.000	52	0%	101	38.6%	71	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TM2
ADAM32	203102	genome.wustl.edu	37	8	39007372	39007372	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145004.5	+1	validated	p.T113	0.131	131	0%	175	28%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
ADAM2	2515	genome.wustl.edu	37	8	39624518	39624518	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001464.3	-1	reviewed	p.C452	1.000	265	0.4%	290	12.4%	0	-	-	-	-	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
IDO1	3620	genome.wustl.edu	37	8	39785573	39785573	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002164.4	+1	validated	p.Q361*	0.000	34	0%	48	25%	35	0%	-	-	-	HMMPfam_IDO
ANK1	286	genome.wustl.edu	37	8	41552713	41552713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142446.1	-1	reviewed	p.L1074I	1.000	83	0%	79	24.1%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ANK1	286	genome.wustl.edu	37	8	41580699	41580699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142446.1	-1	reviewed	p.V318M	1.000	74	0%	103	15.5%	0	-	possibly_damaging(0.787)	tolerated(0.1)	deleterious(0.581)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
IKBKB	3551	genome.wustl.edu	37	8	42171853	42171853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001556.1	+1	validated	p.R236W	1.000	102	0%	114	25.4%	32	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_Kinase_like
IKBKB	3551	genome.wustl.edu	37	8	42171927	42171927	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001556.1	+1	validated	p.P260	0.931	111	0%	128	35.2%	25	0%	-	-	-	superfamily_Kinase_like
IKBKB	3551	genome.wustl.edu	37	8	42176812	42176812	+	Silent	SNP	C	C	T	rs146173263	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001556.1	+1	validated	p.S463	0.997	180	0%	202	30.7%	18	0%	-	-	-	NULL
DKK4	27121	genome.wustl.edu	37	8	42231716	42231716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014420.2	-1	reviewed	p.R193C	1.000	148	0%	222	15.8%	79	0%	-	-	-	NULL
SGK196	84197	genome.wustl.edu	37	8	42958821	42958821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032237.3	+1	validated	p.A44T	0.001	216	0%	294	39.5%	9	0%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47885482	47885482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000399732	-1	known	p.E250G	1.000	71	0%	96	31.2%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKDC	5591	genome.wustl.edu	37	8	48710933	48710933	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081640.1	-1	validated	p.R3441H	0.000	45	0%	43	18.6%	15	0%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48771530	48771530	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081640.1	-1	validated	p.R2075Q	0.000	130	0%	99	18.2%	5	0%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48825009	48825009	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000314191	-1	known	p.T965	0.001	224	0%	260	29.6%	5	0%	-	-	-	superfamily_ARM repeat
PXDNL	137902	genome.wustl.edu	37	8	52323855	52323855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144651.4	-1	validated	p.R673W	1.000	9	0.000	18	0.333	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ATP6V1H	51606	genome.wustl.edu	37	8	54708208	54708208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015941.2	-1	reviewed	p.R290H	1.000	286	0%	278	39.2%	86	0%	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	HMMPfam_V-ATPase_H,superfamily_ARM repeat
LOC100287492	100287492	genome.wustl.edu	37	8	55372554	55372554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342852.1	-1	model	p.S38L	1.000	25	0%	29	34.5%	381	0%	-	-	-	NULL
LOC401480	401480	genome.wustl.edu	37	8	55533471	55533471	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_040305.2	-1	model	NULL	0.000	86	0%	89	38.2%	0	-	-	-	-	-
RP1	6101	genome.wustl.edu	37	8	55541549	55541549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006269.1	+1	reviewed	p.K1703E	0.001	248	0%	232	32.8%	0	-	benign(0.004)	tolerated(0.21)	neutral(0.044)	NULL
TGS1	96764	genome.wustl.edu	37	8	56711751	56711751	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024831.6	+1	validated	p.V607	0.000	87	0%	150	42%	32	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PLAG1	5324	genome.wustl.edu	37	8	57079501	57079501	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114634.1	-1	reviewed	p.P268	0.970	345	0%	332	27.7%	0	-	-	-	-	NULL
SDR16C5	195814	genome.wustl.edu	37	8	57224830	57224830	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138969.2	-1	validated	p.G117	0.014	163	0%	180	25.6%	4	0%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
PENK	5179	genome.wustl.edu	37	8	57354329	57354329	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135690.1	-1	validated	p.G102	0.999	162	0%	168	31%	0	-	-	-	-	NULL
FAM110B	90362	genome.wustl.edu	37	8	59059225	59059225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_147189.2	+1	validated	p.P146S	0.841	27	0%	28	25%	17	0%	benign(0.43)	deleterious(0.03)	deleterious(0.504)	NULL
NSMAF	8439	genome.wustl.edu	37	8	59515852	59515852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144772.1	-1	reviewed	p.N352S	1.000	177	0%	150	13.3%	21	0%	benign(0)	tolerated(1)	-	HMMPfam_Beach,superfamily_BEACH domain
CHD7	55636	genome.wustl.edu	37	8	61768593	61768593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017780.2	+1	reviewed	p.W2332*	1.000	37	0%	36	38.9%	11	0%	-	-	-	NULL
NKAIN3	286183	genome.wustl.edu	37	8	63659614	63659614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173688.2	+1	provisional	p.V133I	0.974	92	0%	93	26.9%	0	-	benign(0.008)	tolerated(0.67)	neutral(0.003)	HMMPfam_NKAIN
MYBL1	4603	genome.wustl.edu	37	8	67488482	67488482	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080416.2	-1	validated	p.N410	0.996	527	0.2%	679	30.9%	4	0%	-	-	-	NULL
C8orf45	157777	genome.wustl.edu	37	8	67786819	67786819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173518.4	+1	validated	p.Q95*	1.000	59	0%	104	32.7%	0	-	-	-	-	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68138292	68138292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006421.3	-1	reviewed	p.R1348H	1.000	124	0%	93	23.7%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
PREX2	80243	genome.wustl.edu	37	8	69020448	69020448	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024870.2	+1	validated	p.V940	1.000	65	0%	81	35.8%	5	0%	-	-	-	NULL
SULF1	23213	genome.wustl.edu	37	8	70515440	70515440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128204.1	+1	validated	p.V359I	1.000	407	0%	355	31.8%	45	0%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SLCO5A1	81796	genome.wustl.edu	37	8	70673993	70673993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030958.2	-1	reviewed	p.R342H	1.000	131	0%	123	28.5%	2	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
TRPA1	8989	genome.wustl.edu	37	8	72946023	72946023	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007332.2	-1	reviewed	p.T908	0.990	180	0%	179	24%	0	-	-	-	-	HMMPfam_Ion_trans
TRPA1	8989	genome.wustl.edu	37	8	72951215	72951215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007332.2	-1	reviewed	p.C727Y	1.000	198	0%	195	35.4%	1	0%	possibly_damaging(0.693)	deleterious(0.05)	deleterious(0.593)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72951992	72951992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007332.2	-1	reviewed	p.P701H	1.000	168	0%	173	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72981338	72981338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007332.2	-1	reviewed	p.A122T	1.000	426	0%	448	39.3%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CRISPLD1	83690	genome.wustl.edu	37	8	75925137	75925137	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031461.4	+1	validated	p.P130	0.997	151	0%	159	39.6%	17	0%	-	-	-	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
ZFHX4	79776	genome.wustl.edu	37	8	77767083	77767083	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024721.4	+1	validated	p.V2597	0.494	76	0%	78	32.1%	1	0%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
ZFHX4	79776	genome.wustl.edu	37	8	77767183	77767183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024721.4	+1	validated	p.R2631W	1.000	69	0%	93	25.8%	0	-	probably_damaging(1)	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZC2HC1A	51101	genome.wustl.edu	37	8	79629670	79629670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016010.2	+1	validated	p.Y307C	1.000	282	0%	276	12%	18	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CA13	377677	genome.wustl.edu	37	8	86171702	86171702	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198584.2	+1	validated	p.L96	0.998	73	0%	107	32.7%	1	0%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
ATP6V0D2	245972	genome.wustl.edu	37	8	87162357	87162357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152565.1	+1	validated	p.R219H	1.000	182	0%	217	29.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
FAM82B	51115	genome.wustl.edu	37	8	87498849	87498849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016033.2	-1	validated	p.R120H	1.000	108	0.9%	136	30.1%	44	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Prenyl_trans
MMP16	4325	genome.wustl.edu	37	8	89198806	89198806	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005941.4	-1	reviewed	p.C101	1.000	242	0%	266	32.3%	0	-	-	-	-	PatternScan_CYSTEINE_SWITCH,superfamily_PGBD-like
OSGIN2	734	genome.wustl.edu	37	8	90937188	90937188	+	Missense_Mutation	SNP	G	G	A	rs141987995	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001126111.1	+1	validated	p.A360T	1.000	191	0%	233	27.9%	35	0%	probably_damaging(0.962)	tolerated(0.07)	deleterious(0.724)	superfamily_FAD/NAD(P)-binding domain
NBN	4683	genome.wustl.edu	37	8	90996774	90996774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002485.4	-1	reviewed	p.P6S	0.680	18	0%	15	33.3%	4	0%	benign(0.352)	deleterious(0)	deleterious(0.556)	superfamily_SMAD/FHA domain
TMEM55A	55529	genome.wustl.edu	37	8	92007991	92007991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018710.2	-1	validated	p.A230T	1.000	159	0%	225	28%	17	0%	possibly_damaging(0.643)	deleterious(0.05)	deleterious(0.571)	HMMPfam_Tmemb_55A
SLC26A7	115111	genome.wustl.edu	37	8	92378821	92378821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_134266.1	+1	reviewed	p.Q501R	1.000	184	0%	257	24.5%	0	-	possibly_damaging(0.923)	deleterious(0.04)	deleterious(0.722)	HMMPfam_STAS,superfamily_STAS
CDH17	1015	genome.wustl.edu	37	8	95178009	95178009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144663.1	-1	reviewed	p.T421M	0.115	85	0%	98	28.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ESRP1	54845	genome.wustl.edu	37	8	95680402	95680402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017697.3	+1	validated	p.A386V	1.000	125	0%	159	35.2%	110	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MTERFD1	51001	genome.wustl.edu	37	8	97270775	97270775	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015942.3	-1	provisional	p.S48	1.000	254	0%	286	26.9%	38	0%	-	-	-	NULL
ENSG00000228224	0	genome.wustl.edu	37	8	102381345	102381345	+	Missense_Mutation	SNP	C	C	T	rs182568407	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000419462	+1	known	p.R70W	0.996	229	0%	276	33.7%	1	0%	-	-	-	HMMPfam_NAC
FZD6	8323	genome.wustl.edu	37	8	104342108	104342108	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003506.3	+1	reviewed	p.I589	0.966	80	0%	107	36.4%	86	0%	-	-	-	NULL
SLC25A32	81034	genome.wustl.edu	37	8	104413804	104413804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030780.3	-1	validated	p.R251H	1.000	183	0.5%	185	37.8%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
RIMS2	9699	genome.wustl.edu	37	8	104955064	104955064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100117.1	+1	validated	p.H871Y	1.000	166	0%	173	35.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
LRP12	29967	genome.wustl.edu	37	8	105503421	105503421	+	Missense_Mutation	SNP	G	G	A	rs190890755	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013437.4	-1	reviewed	p.A687V	1.000	92	0%	108	48.1%	23	0%	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	NULL
LRP12	29967	genome.wustl.edu	37	8	105503653	105503653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013437.4	-1	reviewed	p.A610T	1.000	143	0%	173	28.3%	32	0%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
ZFPM2	23414	genome.wustl.edu	37	8	106814510	106814510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012082.3	+1	reviewed	p.R734C	1.000	44	0%	61	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OXR1	55074	genome.wustl.edu	37	8	107719297	107719297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018002.2	+1	validated	p.Q516H	1.000	121	0.8%	148	37.8%	32	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RSPO2	340419	genome.wustl.edu	37	8	108913337	108913337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178565.4	-1	validated	p.S233N	1.000	199	0%	191	11%	0	-	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
EIF3E	3646	genome.wustl.edu	37	8	109240533	109240533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001568.2	-1	validated	p.R229C	0.998	289	0%	378	31%	761	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
EBAG9	9166	genome.wustl.edu	37	8	110569182	110569182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004215.3	+1	reviewed	p.E114*	1.000	69	0%	67	25.4%	66	0%	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113267569	113267569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198123.1	-1	validated	p.C3317Y	1.000	190	0%	164	33.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113326754	113326754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198123.1	-1	validated	p.A2485T	1.000	186	0%	193	33.2%	0	-	possibly_damaging(0.903)	tolerated(0.82)	neutral(0.358)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113348940	113348940	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198123.1	-1	validated	p.G2320	0.958	203	0%	208	20.7%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113402991	113402991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198123.1	-1	validated	p.R1946C	1.000	241	0%	240	33.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRPS1	7227	genome.wustl.edu	37	8	116616230	116616230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014112.2	-1	reviewed	p.D656N	0.801	79	0%	107	33.6%	9	0%	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
TRPS1	7227	genome.wustl.edu	37	8	116616231	116616231	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014112.2	-1	reviewed	p.S655	0.020	79	0%	106	27.4%	9	0%	-	-	-	NULL
TRPS1	7227	genome.wustl.edu	37	8	116616370	116616370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014112.2	-1	reviewed	p.A609V	1.000	113	0%	151	12.6%	10	0%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
TAF2	6873	genome.wustl.edu	37	8	120754847	120754847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003184.3	-1	reviewed	p.Q1088H	1.000	110	0%	91	38.5%	30	0%	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	NULL
COL14A1	7373	genome.wustl.edu	37	8	121267554	121267554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021110.1	+1	validated	p.R943H	0.896	144	0.7%	174	33.9%	9	0%	probably_damaging(0.987)	tolerated(0.2)	deleterious(0.485)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
HAS2	3037	genome.wustl.edu	37	8	122641199	122641199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005328.2	-1	reviewed	p.L128I	0.446	428	0%	519	29.9%	9	0%	benign(0.064)	tolerated(0.15)	neutral(0.245)	HMMPfam_Glycos_transf_2,superfamily_SSF53448
WDR67	93594	genome.wustl.edu	37	8	124138754	124138754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145647.3	+1	validated	p.A571T	1.000	119	0%	147	28.6%	9	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Ypt/Rab-GAP domain of gyp1p
ATAD2	29028	genome.wustl.edu	37	8	124340602	124340602	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014109.3	-1	reviewed	p.A1232	0.884	123	0%	194	24.2%	26	0%	-	-	-	NULL
ATAD2	29028	genome.wustl.edu	37	8	124384031	124384031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014109.3	-1	reviewed	p.V139I	0.312	65	0%	122	29.5%	10	0%	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
KLHL38	340359	genome.wustl.edu	37	8	124664836	124664836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081675.2	-1	validated	p.A111T	1.000	109	0%	88	38.6%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KLHL38	340359	genome.wustl.edu	37	8	124665017	124665017	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081675.2	-1	validated	p.N50	0.949	112	0%	89	28.1%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
FAM91A1	157769	genome.wustl.edu	37	8	124810466	124810466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144963.2	+1	validated	p.S516R	1.000	203	0%	276	12%	27	0%	probably_damaging(0.998)	tolerated(0.46)	deleterious(0.486)	NULL
FER1L6	654463	genome.wustl.edu	37	8	125058133	125058133	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039112.2	+1	validated	p.S905	0.037	188	0%	176	31.8%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L6	654463	genome.wustl.edu	37	8	125131850	125131850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039112.2	+1	validated	p.R1798H	1.000	236	0%	241	12.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SQLE	6713	genome.wustl.edu	37	8	126030321	126030321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003129.3	+1	reviewed	p.A409T	1.000	128	0%	142	12.7%	98	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SE,superfamily_SSF51905
KIAA0196	9897	genome.wustl.edu	37	8	126093974	126093974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014846.3	-1	reviewed	p.M149I	1.000	52	0%	62	21%	12	0%	benign(0.08)	tolerated(0.39)	neutral(0.021)	HMMPfam_Strumpellin
TRIB1	10221	genome.wustl.edu	37	8	126445778	126445778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025195.2	+1	validated	p.A194T	0.997	80	0%	86	27.9%	15	0%	benign(0.037)	tolerated(0.28)	neutral(0.034)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRIB1	10221	genome.wustl.edu	37	8	126445832	126445832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025195.2	+1	validated	p.V212I	1.000	54	0%	61	36.1%	20	0%	possibly_damaging(0.735)	tolerated(0.14)	deleterious(0.518)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRIB1	10221	genome.wustl.edu	37	8	126448435	126448435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025195.2	+1	validated	p.R281*	1.000	85	0%	111	22.5%	26	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MIR1205	100302161	genome.wustl.edu	37	8	128972919	128972919	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408844	+1	known	NULL	0.928	74	0%	78	30.8%	0	-	-	-	-	-
OC90	729330	genome.wustl.edu	37	8	133036748	133036748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080399.2	-1	validated	p.G472R	0.002	46	0%	40	35%	0	-	benign(0.005)	tolerated(1)	-	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133192475	133192475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004519.2	-1	reviewed	p.R236C	1.000	75	0%	66	12.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNQ3	3786	genome.wustl.edu	37	8	133192492	133192492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004519.2	-1	reviewed	p.R230H	1.000	74	0%	63	39.7%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_Ion_trans,superfamily_SSF81324
PHF20L1	51105	genome.wustl.edu	37	8	133844574	133844574	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016018.4	+1	validated	p.S613	1.000	184	0%	207	30.4%	17	0%	-	-	-	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133854944	133854944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016018.4	+1	validated	p.T858A	1.000	160	0%	205	13.7%	23	0%	possibly_damaging(0.93)	deleterious(0.01)	deleterious(0.782)	NULL
TG	7038	genome.wustl.edu	37	8	133925394	133925394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003235.4	+1	reviewed	p.T1421I	0.944	137	0%	133	28.6%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
TG	7038	genome.wustl.edu	37	8	133931729	133931729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003235.4	+1	reviewed	p.G1496D	0.999	155	0%	178	14%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCC2_GCC3
SLA	6503	genome.wustl.edu	37	8	134057315	134057315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006748.3	-1	validated	p.R173H	1.000	45	0%	59	27.1%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
WISP1	8840	genome.wustl.edu	37	8	134232840	134232840	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003882.2	+1	reviewed	p.G122	1.000	25	0%	32	28.1%	0	-	-	-	-	NULL
KCNK9	51305	genome.wustl.edu	37	8	140630579	140630579	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016601.2	-1	reviewed	p.S349	0.014	163	0%	119	31.9%	0	-	-	-	-	NULL
KCNK9	51305	genome.wustl.edu	37	8	140631331	140631331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016601.2	-1	reviewed	p.A99T	1.000	46	0%	42	33.3%	0	-	possibly_damaging(0.854)	tolerated(0.11)	deleterious(0.601)	HMMPfam_Ion_trans_2,superfamily_SSF81324
EIF2C2	27161	genome.wustl.edu	37	8	141570576	141570576	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012154.3	-1	reviewed	p.R177H	0.002	62	0%	42	38.1%	10	0%	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142151331	142151331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000395207	+1	known	p.R96H	0.000	77	0%	62	14.5%	0	-	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142186846	142186846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014957.2	+1	validated	p.A818T	1.000	63	0%	50	32%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAI1	575	genome.wustl.edu	37	8	143563041	143563041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001702.2	+1	reviewed	p.A700V	1.000	4	0.000	11	0.545	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
TOP1MT	116447	genome.wustl.edu	37	8	144408427	144408427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052963.1	-1	reviewed	p.A150T	0.976	27	0%	30	20%	57	0%	benign(0.045)	deleterious(0.02)	neutral(0.386)	HMMPfam_Topoisom_I_N,superfamily_TopoI_DNA_bd_euk
MAPK15	225689	genome.wustl.edu	37	8	144800248	144800248	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139021.2	+1	validated	e3+2	1.000	32	0%	64	31.2%	1	0%	-	-	-	-
EPPK1	83481	genome.wustl.edu	37	8	144942104	144942104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031308.1	-1	validated	p.T1773M	0.238	8	0.000	9	0.667	2	0%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
PLEC	5339	genome.wustl.edu	37	8	144997397	144997397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201380.2	-1	reviewed	p.R2371C	0.999	5	0.000	6	0.667	11	0%	probably_damaging(0.999)	-	-	NULL
PARP10	84875	genome.wustl.edu	37	8	145058809	145058809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032789.3	-1	validated	p.A454V	0.765	88	0%	126	33.3%	21	0%	benign(0.145)	tolerated(0.26)	neutral(0.046)	NULL
ZNF250	58500	genome.wustl.edu	37	8	146106972	146106972	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021061.3	-1	validated	p.C537	0.038	43	0%	42	19%	22	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF16	7564	genome.wustl.edu	37	8	146157129	146157129	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029976.2	-1	reviewed	p.P348	0.000	180	0%	259	27.8%	14	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
FOXD4	2298	genome.wustl.edu	37	9	117326	117326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207305.3	-1	validated	p.R265H	0.911	56	0%	37	24.3%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
FOXD4	2298	genome.wustl.edu	37	9	117572	117572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207305.3	-1	validated	p.A183V	1.000	269	0%	179	10.1%	2	0%	possibly_damaging(0.898)	tolerated(0.06)	deleterious(0.677)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
FOXD4	2298	genome.wustl.edu	37	9	118004	118005	+	In_Frame_Ins	INS	-	-	CCTCTTCTTCCA	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207305.3	-1	validated	p.39in_frame_insVEEE	0.429:0.475	-	-	-	-	-	-	-	-	-	NULL
KANK1	23189	genome.wustl.edu	37	9	745199	745199	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015158.2	+1	reviewed	p.T1341	0.315	254	0%	166	35.5%	26	0%	-	-	-	NULL
GLIS3	169792	genome.wustl.edu	37	9	3879441	3879441	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042413.1	-1	reviewed	p.D761	0.976	82	0%	62	32.3%	8	0%	-	-	-	NULL
GLIS3	169792	genome.wustl.edu	37	9	4117896	4117896	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042413.1	-1	reviewed	p.Q528*	1.000	111	0%	123	34.1%	9	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
SLC1A1	6505	genome.wustl.edu	37	9	4573998	4573998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004170.5	+1	reviewed	p.A287T	1.000	180	0%	183	21.3%	13	0%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_SDF
MLANA	2315	genome.wustl.edu	37	9	5897630	5897630	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005511.1	+1	validated	p.R51*	0.999	175	0%	166	11.4%	3	0%	-	-	-	NULL
GLDC	2731	genome.wustl.edu	37	9	6553385	6553385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000170.2	-1	reviewed	p.S814P	1.000	85	0%	75	38.7%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_PyrdxlP-dep_Trfase_major
MPDZ	8777	genome.wustl.edu	37	9	13126742	13126742	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003829.3	-1	validated	p.S1498	1.000	232	0%	220	37.7%	11	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FREM1	158326	genome.wustl.edu	37	9	14808066	14808066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144966.5	-1	reviewed	p.G987D	0.996	166	0%	197	14.7%	3	0%	benign(0.008)	tolerated(0.75)	neutral(0.002)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15846833	15846833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173550.2	+1	predicted	p.R1134H	1.000	52	0%	48	50%	8	0%	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15874610	15874610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173550.2	+1	predicted	p.E1183D	1.000	270	0%	252	27%	4	0%	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	NULL
BNC2	54796	genome.wustl.edu	37	9	16437021	16437021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017637.5	-1	validated	p.T391A	1.000	115	0%	135	19.3%	0	-	benign(0.064)	tolerated(0.37)	neutral(0.023)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17394880	17394880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017738.2	+1	validated	p.A810T	0.784	182	0%	243	28.4%	14	0%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17462981	17462983	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017738.2	+1	validated	p.E1127in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SH3GL2	6456	genome.wustl.edu	37	9	17795684	17795684	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003026.2	+1	validated	p.G334	1.000	71	0%	62	30.6%	1	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ADAMTSL1	92949	genome.wustl.edu	37	9	18574218	18574218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040272.4	+1	validated	p.R143H	1.000	362	0%	317	14.8%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18777581	18777581	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040272.4	+1	validated	p.T1118	0.000	17	0%	21	33.3%	0	-	-	-	-	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18887911	18887911	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040272.4	+1	validated	p.T1444	0.000	73	0%	65	35.4%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DENND4C	55667	genome.wustl.edu	37	9	19316742	19316742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017925.4	+1	provisional	p.A335V	1.000	306	0%	336	33%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_dDENN,HMMSmart_SM00801
DENND4C	55667	genome.wustl.edu	37	9	19336369	19336369	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017925.4	+1	provisional	p.P661	0.042	114	0%	139	12.2%	2	0%	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19350768	19350768	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017925.4	+1	provisional	p.S1177	0.000	242	0%	276	30.8%	10	0%	-	-	-	NULL
PLAA	9373	genome.wustl.edu	37	9	26905837	26905837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031689.2	-1	validated	p.A687V	1.000	75	0%	116	26.7%	98	0%	benign(0.001)	tolerated(1)	-	HMMPfam_PUL,superfamily_ARM-type_fold
IFT74	80173	genome.wustl.edu	37	9	27062665	27062665	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099222.1	+1	validated	p.N578	1.000	111	0%	122	45.1%	16	0%	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32405567	32405567	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002197.2	+1	reviewed	p.F21	1.000	87	0%	112	35.7%	8	0%	-	-	-	superfamily_Aconitase iron-sulfur domain
ACO1	48	genome.wustl.edu	37	9	32433796	32433796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002197.2	+1	reviewed	p.T641M	1.000	234	0%	202	30.2%	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Aconitase
TAF1L	138474	genome.wustl.edu	37	9	32632649	32632649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153809.2	-1	provisional	p.G977W	1.000	296	0%	381	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM215	401498	genome.wustl.edu	37	9	32784185	32784185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_212558.2	+1	validated	p.R2W	1.000	88	0%	73	26%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
APTX	54840	genome.wustl.edu	37	9	32984750	32984750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175073.1	-1	reviewed	p.A217T	0.881	235	0%	295	27.5%	64	1.5%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_HIT,superfamily_HIT-like
NFX1	4799	genome.wustl.edu	37	9	33338547	33338547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002504.3	+1	reviewed	p.R692Q	1.000	207	0%	288	26.7%	31	0%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
UBAP2	55833	genome.wustl.edu	37	9	33922844	33922844	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018449.2	-1	reviewed	p.T1035	0.283	52	0%	46	28.3%	58	0%	-	-	-	NULL
DCAF12	25853	genome.wustl.edu	37	9	34107400	34107400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015397.3	-1	reviewed	p.A166V	1.000	159	0%	264	29.9%	69	1.4%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	superfamily_SSF75011
DNAI1	27019	genome.wustl.edu	37	9	34517412	34517412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012144.2	+1	reviewed	p.R650C	1.000	38	0%	70	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
ENHO	375704	genome.wustl.edu	37	9	34521554	34521554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198573.2	-1	validated	p.S47Y	0.950	26	0%	35	31.4%	13	0%	benign(0.113)	-	-	NULL
LOC100288715	100288715	genome.wustl.edu	37	9	34557685	34557685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342889.1	+1	model	p.A250V	1.000	30	0%	25	36%	0	-	benign(0.004)	tolerated(0.19)	neutral(0.050)	NULL
KIAA1045	23349	genome.wustl.edu	37	9	34971557	34971557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015297.1	+1	validated	p.V88M	0.969	113	0%	165	37%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KIAA1045	23349	genome.wustl.edu	37	9	34976649	34976649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015297.1	+1	validated	p.A254V	1.000	54	0%	54	37%	0	-	possibly_damaging(0.952)	tolerated(0.42)	neutral(0.410)	NULL
DNAJB5	25822	genome.wustl.edu	37	9	34996616	34996616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135005.1	+1	validated	p.R261H	1.000	30	0%	51	43.1%	19	0%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	superfamily_HSP40/DnaJ peptide-binding domain
C9orf131	138724	genome.wustl.edu	37	9	35042956	35042956	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203299.2	+1	validated	p.D110	0.000	294	0%	323	14.2%	0	-	-	-	-	NULL
C9orf131	138724	genome.wustl.edu	37	9	35045009	35045009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203299.2	+1	validated	p.R795W	0.382	653	0.2%	606	31.7%	0	-	possibly_damaging(0.587)	deleterious(0.01)	deleterious(0.608)	NULL
VCP	7415	genome.wustl.edu	37	9	35057147	35057147	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007126.3	-1	reviewed	p.Y796	1.000	120	0%	197	28.9%	585	0%	-	-	-	NULL
FANCG	2189	genome.wustl.edu	37	9	35075493	35075493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004629.1	-1	reviewed	p.A468T	0.969	106	0.9%	148	14.2%	39	0%	probably_damaging(0.98)	tolerated(0.21)	neutral(0.468)	superfamily_TPR-like
PIGO	84720	genome.wustl.edu	37	9	35092757	35092757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032634.2	-1	reviewed	p.R376Q	1.000	86	0%	108	13%	28	0%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_Phosphodiest
UNC13B	10497	genome.wustl.edu	37	9	35380501	35380501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006377.3	+1	reviewed	p.R665C	1.000	80	0%	94	29.8%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UNC13B	10497	genome.wustl.edu	37	9	35399224	35399224	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006377.3	+1	reviewed	p.R1298	0.984	229	0%	205	11.2%	45	0%	-	-	-	HMMPfam_Membr_traf_MHD
UNC13B	10497	genome.wustl.edu	37	9	35403813	35403813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006377.3	+1	reviewed	p.A1520V	1.000	61	0%	64	35.9%	30	0%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TESK1	7016	genome.wustl.edu	37	9	35609306	35609306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006285.2	+1	reviewed	p.A483V	0.001	40	0%	67	37.3%	84	0%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
C9orf100	84904	genome.wustl.edu	37	9	35662264	35662264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000378405	-1	known	p.T301I	1.000	49	0%	57	36.8%	18	0%	benign(0.007)	deleterious(0.04)	neutral(0.349)	superfamily_SSF50729
TPM2	7169	genome.wustl.edu	37	9	35684830	35684830	+	Silent	SNP	G	G	A	rs3215700	byCluster	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000378309	-1	known	p.C290	0.020	40	0%	62	37.1%	0	-	-	-	-	NULL
RGP1	9827	genome.wustl.edu	37	9	35751737	35751737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080496.1	+1	provisional	p.V290I	0.986	50	0%	93	36.6%	27	0%	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMPfam_Rgp1
NPR2	4882	genome.wustl.edu	37	9	35792963	35792963	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003995.3	+1	reviewed	p.G186	0.537	36	0%	37	35.1%	3	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
OR13J1	392309	genome.wustl.edu	37	9	35869883	35869883	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004487.1	-1	provisional	p.H172	0.000	88	0%	68	11.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR13J1	392309	genome.wustl.edu	37	9	35869932	35869932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004487.1	-1	provisional	p.S156L	0.691	77	0%	70	10%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2S2	56656	genome.wustl.edu	37	9	35957922	35957922	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019897.2	-1	provisional	p.T58	0.092	90	0%	86	27.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
RNF38	152006	genome.wustl.edu	37	9	36352809	36352809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022781.4	-1	reviewed	p.R370C	1.000	78	0%	87	31%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNF38	152006	genome.wustl.edu	37	9	36376094	36376094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022781.4	-1	reviewed	p.R65C	1.000	70	0%	89	32.6%	15	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MELK	9833	genome.wustl.edu	37	9	36651806	36651806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014791.2	+1	provisional	p.P329S	0.985	709	0.1%	846	10.8%	30	0%	benign(0.038)	tolerated(0.44)	neutral(0.015)	NULL
MCART1	92014	genome.wustl.edu	37	9	37888017	37888017	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033412.3	-1	validated	p.V177	0.998	171	0%	209	24.4%	6	0%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
MCART1	92014	genome.wustl.edu	37	9	37888082	37888082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033412.3	-1	validated	p.N156D	1.000	191	0%	206	39.3%	18	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SHB	6461	genome.wustl.edu	37	9	37974681	37974681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003028.2	-1	validated	p.R331M	1.000	54	0%	54	22.2%	63	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALDH1B1	219	genome.wustl.edu	37	9	38395753	38395753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000692.3	+1	reviewed	p.R3H	0.933	32	0%	52	34.6%	24	0%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
IGFBPL1	347252	genome.wustl.edu	37	9	38414163	38414163	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007563.1	-1	provisional	p.N166	0.680	51	0%	56	33.9%	1	0%	-	-	-	HMMPfam_I-set,superfamily_SSF48726
C9orf51	647044	genome.wustl.edu	37	9	38527545	38527545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000377689	+1	known	p.R151H	0.001	55	0%	52	11.5%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
CNTNAP3	79937	genome.wustl.edu	37	9	39102549	39102549	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033655.3	-1	reviewed	p.Q900	0.000	122	0%	162	23.5%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP3	79937	genome.wustl.edu	37	9	39140612	39140612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033655.3	-1	reviewed	p.A594S	1.000	78	0%	117	19.7%	0	-	benign(0.086)	deleterious(0.04)	neutral(0.355)	superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases
PGM5	5239	genome.wustl.edu	37	9	71080119	71080119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021965.3	+1	validated	p.G385D	1.000	231	0%	244	31.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase first 3 domains
PIP5K1B	8395	genome.wustl.edu	37	9	71504034	71504034	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003558.2	+1	validated	p.L152	1.000	288	0%	306	14.4%	0	-	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PIP5K1B	8395	genome.wustl.edu	37	9	71549913	71549913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003558.2	+1	validated	p.R437W	0.815	171	0%	281	13.2%	0	-	possibly_damaging(0.936)	tolerated(0.11)	deleterious(0.653)	NULL
PRKACG	5568	genome.wustl.edu	37	9	71628607	71628607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002732.3	-1	reviewed	p.Q134H	0.009	37	0%	33	21.2%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TJP2	9414	genome.wustl.edu	37	9	71831254	71831254	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004817.3	+1	reviewed	e3-1	1.000	31	0%	49	44.9%	0	-	-	-	-	-
TJP2	9414	genome.wustl.edu	37	9	71842785	71842785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004817.3	+1	reviewed	p.P439S	0.923	23	0%	43	30.2%	40	0%	benign(0.019)	tolerated(0.13)	neutral(0.254)	NULL
TJP2	9414	genome.wustl.edu	37	9	71867817	71867817	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004817.3	+1	reviewed	e22+1	1.000	59	0%	79	41.8%	1	0%	-	-	-	-
TJP2	9414	genome.wustl.edu	37	9	71869251	71869251	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004817.3	+1	reviewed	p.Y1178	0.919	158	0%	171	33.3%	94	0%	-	-	-	NULL
APBA1	320	genome.wustl.edu	37	9	72131118	72131118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001163.3	-1	reviewed	p.R337W	0.999	29	0%	14	42.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTAR1	375743	genome.wustl.edu	37	9	72347143	72347143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099666.1	-1	validated	p.G185D	0.978	58	0%	91	16.5%	9	0%	benign(0.017)	tolerated(0.57)	neutral(0.007)	HMMPfam_PPTA,superfamily_Prenyl_trans
TRPM3	80036	genome.wustl.edu	37	9	73151990	73151990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007471.2	-1	reviewed	p.R1335*	1.000	214	0%	270	27.8%	0	-	-	-	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73213425	73213425	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000396280	-1	known	p.R823C	0.995	270	0%	411	29.9%	0	-	-	-	-	HMMPfam_Ion_trans
TRPM3	80036	genome.wustl.edu	37	9	73458035	73458035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007471.2	-1	reviewed	p.R229C	1.000	121	0%	149	27.5%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77377105	77377105	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017662.4	-1	reviewed	p.A1494	0.000	301	0%	241	26.6%	0	-	-	-	-	NULL
PCSK5	5125	genome.wustl.edu	37	9	78686647	78686647	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006200.3	+1	reviewed	p.R243*	1.000	149	0%	255	38.4%	2	0%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PCSK5	5125	genome.wustl.edu	37	9	78772080	78772080	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006200.3	+1	reviewed	e11+2	1.000	105	0%	129	39.5%	0	-	-	-	-	-
PRUNE2	158471	genome.wustl.edu	37	9	79270373	79270373	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000426088	-1	known	p.R2096C	0.781	59	0%	47	29.8%	0	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79320989	79320989	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000426088	-1	known	p.A1389T	0.000	171	0%	171	29.8%	0	-	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79910752	79910752	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033305.2	+1	reviewed	p.R1268*	1.000	168	0%	211	29.4%	3	0%	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79954681	79954681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033305.2	+1	reviewed	p.A2210T	1.000	379	0%	490	28.8%	7	0%	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	HMMPfam_DUF1162
FAM75D1	389763	genome.wustl.edu	37	9	84607267	84607267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001670.2	+1	validated	p.V628M	0.006	215	0%	230	31.3%	0	-	probably_damaging(0.997)	tolerated(0.48)	deleterious(0.477)	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84608184	84608184	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001670.2	+1	validated	p.A933	0.000	208	0%	232	34.5%	0	-	-	-	-	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84609332	84609332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001670.2	+1	validated	p.R1316H	0.000	63	0%	72	45.8%	0	-	probably_damaging(0.997)	tolerated(0.25)	deleterious(0.503)	NULL
RASEF	158158	genome.wustl.edu	37	9	85615853	85615853	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152573.2	-1	provisional	p.H465	0.003	125	0%	128	12.5%	16	0%	-	-	-	NULL
SLC28A3	64078	genome.wustl.edu	37	9	86903068	86903068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022127.1	-1	provisional	p.A392V	1.000	285	0%	356	11.5%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Nucleos_tra2_C
NTRK2	4915	genome.wustl.edu	37	9	87342675	87342675	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006180.3	+1	reviewed	p.N320	0.031	182	0%	177	31.6%	0	-	-	-	-	superfamily_SSF48726
GOLM1	51280	genome.wustl.edu	37	9	88694210	88694210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016548.3	-1	reviewed	p.R9H	1.000	55	0%	62	11.3%	59	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88938330	88938330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024617.3	-1	validated	p.R779C	0.000	237	0%	306	13.4%	19	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90315135	90315135	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004938.2	+1	reviewed	p.R952*	0.655	154	0%	189	30.7%	30	0%	-	-	-	NULL
SEMA4D	10507	genome.wustl.edu	37	9	92007426	92007426	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006378.3	-1	validated	p.S178	0.000	52	0%	50	32%	24	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
NFIL3	4783	genome.wustl.edu	37	9	94172510	94172510	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005384.2	-1	validated	p.S169	0.000	94	0%	133	15.8%	89	0%	-	-	-	HMMPfam_Vert_IL3-reg_TF
ROR2	4920	genome.wustl.edu	37	9	94538044	94538044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004560.2	-1	reviewed	p.G52S	0.126	50	0%	59	32.2%	2	0%	benign(0)	tolerated(1)	-	NULL
SPTLC1	10558	genome.wustl.edu	37	9	94842338	94842338	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006415.2	-1	reviewed	p.G129	0.289	115	0%	132	34.1%	53	0%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
NOL8	55035	genome.wustl.edu	37	9	95081581	95081581	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017948.5	-1	validated	p.N113	0.000	121	0%	161	29.8%	19	0%	-	-	-	NULL
CENPP	401541	genome.wustl.edu	37	9	95094560	95094560	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012267.1	+1	validated	p.T72	0.000	110	0%	152	27%	8	0%	-	-	-	NULL
FGD3	89846	genome.wustl.edu	37	9	95796862	95796862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083536.1	+1	validated	p.G609S	0.176	36	0%	41	14.6%	8	0%	benign(0.028)	tolerated(0.72)	neutral(0.003)	HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,superfamily_PH domain-like
WNK2	65268	genome.wustl.edu	37	9	96051365	96051365	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000432730	+1	known	p.R1439H	0.002	8	0.000	5	0.800	27	0%	-	-	-	NULL
C9orf129	445577	genome.wustl.edu	37	9	96097790	96097790	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098808.1	-1	provisional	p.T77	0.983	75	0%	49	44.9%	6	0%	-	-	-	NULL
PTPDC1	138639	genome.wustl.edu	37	9	96863977	96863977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152422.3	+1	reviewed	p.D713N	1.000	185	0%	144	36.1%	7	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
PTCH1	5727	genome.wustl.edu	37	9	98209227	98209227	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000264.3	-1	reviewed	p.C1437	0.989	90	0%	90	36.7%	9	0%	unknown(0)	-	-	NULL
C9orf102	375748	genome.wustl.edu	37	9	98766979	98766979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000407474	+1	known	p.R205S	1.000	20	0%	18	44.4%	13	0%	benign(0.337)	tolerated(0.17)	neutral(0.165)	NULL
ZNF510	22869	genome.wustl.edu	37	9	99522524	99522524	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014930.1	-1	provisional	p.Y196*	0.000	161	0%	179	29.6%	1	0%	-	-	-	NULL
FAM22G	441457	genome.wustl.edu	37	9	99694373	99694373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001045477.2	+1	validated	p.A129V	0.003	57	0%	36	27.8%	0	-	benign(0.104)	tolerated(0.06)	neutral(0.331)	NULL
LOC100288141	100288141	genome.wustl.edu	37	9	100069967	100069967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002342930.1	-1	model	p.L25I	0.000	54	0%	66	15.2%	0	-	-	-	-	NULL
MIR1302-8	100302223	genome.wustl.edu	37	9	100125932	100125932	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408342	-1	known	NULL	0.000	37	0%	54	29.6%	0	-	-	-	-	-
TDRD7	23424	genome.wustl.edu	37	9	100245568	100245568	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014290.2	+1	validated	p.S950	0.885	99	0%	164	24.4%	13	0%	-	-	-	HMMPfam_TUDOR
TMOD1	7111	genome.wustl.edu	37	9	100326415	100326415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003275.3	+1	reviewed	p.P195S	1.000	37	0%	37	24.3%	6	0%	benign(0.004)	tolerated(1)	-	HMMPfam_Tropomodulin,superfamily_SSF52047
TMOD1	7111	genome.wustl.edu	37	9	100328234	100328234	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003275.3	+1	reviewed	p.A241	0.001	40	0%	78	33.3%	3	0%	-	-	-	HMMPfam_Tropomodulin,superfamily_SSF52047
TSTD2	158427	genome.wustl.edu	37	9	100388098	100388098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139246.4	-1	validated	p.A116V	0.982	202	0%	255	36.5%	9	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
NCBP1	4686	genome.wustl.edu	37	9	100407441	100407441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002486.4	+1	reviewed	p.A142T	1.000	208	0%	195	24.6%	42	0%	benign(0.023)	tolerated(0.14)	neutral(0.251)	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
CORO2A	7464	genome.wustl.edu	37	9	100892076	100892076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003389.3	-1	reviewed	p.G323S	1.000	71	0%	56	32.1%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40 repeat-like,HMMPfam_DUF1900
ANKS6	203286	genome.wustl.edu	37	9	101540531	101540531	+	Missense_Mutation	SNP	G	G	A	rs141766991	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173551.3	-1	provisional	p.A515V	0.000	21	0%	24	54.2%	9	0%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ANKS6	203286	genome.wustl.edu	37	9	101547144	101547144	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173551.3	-1	provisional	p.R293*	1.000	86	0%	140	42.1%	32	0%	-	-	-	HMMSmart_SM00248
TGFBR1	7046	genome.wustl.edu	37	9	101904947	101904947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004612.2	+1	reviewed	p.G312D	1.000	188	0%	203	23.6%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NR4A3	8013	genome.wustl.edu	37	9	102590615	102590616	+	In_Frame_Ins	INS	-	-	CAC	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173200.1	+1	reviewed	p.112in_frame_insH	0.994:1.000	-	-	-	-	-	-	-	-	-	NULL
INVS	27130	genome.wustl.edu	37	9	103055258	103055258	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014425.2	+1	reviewed	p.R907*	0.803	89	0%	109	33%	19	0%	-	-	-	NULL
TEX10	54881	genome.wustl.edu	37	9	103070783	103070786	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017746.3	-1	validated	p.K821fs	1.000:0.986:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TMEFF1	8577	genome.wustl.edu	37	9	103338823	103338823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003692.3	+1	validated	p.R362C	1.000	315	0%	360	34.7%	64	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEFF1	8577	genome.wustl.edu	37	9	103338863	103338863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003692.3	+1	validated	p.T375M	0.996	351	0.3%	388	25.5%	27	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZNF189	7743	genome.wustl.edu	37	9	104171857	104171857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003452.2	+1	validated	p.A603T	0.989	164	0%	188	41%	39	0%	benign(0.135)	deleterious(0.03)	neutral(0.376)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ALDOB	229	genome.wustl.edu	37	9	104193159	104193159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000035.3	-1	reviewed	p.R4Q	0.972	74	0%	47	12.8%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	superfamily_Aldolase
RNF20	56254	genome.wustl.edu	37	9	104307102	104307102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019592.5	+1	reviewed	p.E228K	1.000	210	0%	152	18.4%	47	0%	unknown(0)	tolerated(0.11)	-	NULL
RNF20	56254	genome.wustl.edu	37	9	104312993	104312993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019592.5	+1	reviewed	p.A400T	1.000	345	0%	300	25.7%	52	0%	unknown(0)	tolerated(1)	-	NULL
GRIN3A	116443	genome.wustl.edu	37	9	104385644	104385644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133445.2	-1	reviewed	p.A857V	1.000	153	0%	145	22.8%	0	-	possibly_damaging(0.925)	tolerated(0.06)	deleterious(0.696)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRIN3A	116443	genome.wustl.edu	37	9	104448995	104448995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133445.2	-1	reviewed	p.V396A	1.000	161	0%	174	31%	0	-	benign(0.104)	deleterious(0)	neutral(0.453)	superfamily_SSF53822
SMC2	10592	genome.wustl.edu	37	9	106861965	106861965	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042550.1	+1	validated	e4+2	1.000	84	0%	110	44.5%	0	-	-	-	-	-
OR13C9	286362	genome.wustl.edu	37	9	107380170	107380170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001956.1	-1	provisional	p.A106T	0.950	317	0%	426	28.6%	0	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF462	58499	genome.wustl.edu	37	9	109734480	109734480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021224.4	+1	validated	p.R2208C	1.000	182	0%	191	30.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109773206	109773206	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021224.4	+1	validated	p.D2472	0.005	113	0%	127	28.3%	2	0%	-	-	-	superfamily_beta-sandwich domain of Sec23/24
KLF4	9314	genome.wustl.edu	37	9	110249330	110249330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004235.4	-1	validated	p.A415T	1.000	63	0%	78	38.5%	12	0%	possibly_damaging(0.844)	deleterious(0)	deleterious(0.768)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ACTL7A	10881	genome.wustl.edu	37	9	111625340	111625340	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006687.2	+1	reviewed	p.G246	0.991	40	0%	40	50%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
IKBKAP	8518	genome.wustl.edu	37	9	111689669	111689669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003640.3	-1	reviewed	p.L123R	1.000	159	0%	202	29.7%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IKI3,superfamily_Amine_DH_B_like
FRRS1L	23732	genome.wustl.edu	37	9	111903709	111903709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014334.2	-1	validated	p.R259H	1.000	188	0.5%	372	33.1%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_DoH,HMMPfam_DOMON
EPB41L4B	54566	genome.wustl.edu	37	9	112018684	112018684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019114.3	-1	validated	p.H277Y	1.000	274	0%	288	31.6%	18	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_FERM_M,HMMSmart_SM00295,superfamily_PH domain-like
PTPN3	5774	genome.wustl.edu	37	9	112168788	112168788	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002829.3	-1	reviewed	p.S582	1.000	151	0%	157	33.8%	18	0%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PTPN3	5774	genome.wustl.edu	37	9	112182742	112182742	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002829.3	-1	reviewed	p.S425	0.449	118	0%	119	32.8%	19	0%	-	-	-	NULL
TXNDC8	255220	genome.wustl.edu	37	9	113091570	113091570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003936.2	-1	validated	p.A44D	0.997	90	0%	133	23.3%	0	-	probably_damaging(0.962)	tolerated(0.33)	neutral(0.429)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
SVEP1	79987	genome.wustl.edu	37	9	113208197	113208197	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153366.3	-1	validated	p.D1461	0.808	100	0%	137	35.8%	2	0%	-	-	-	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
SVEP1	79987	genome.wustl.edu	37	9	113261492	113261492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153366.3	-1	validated	p.P504S	1.000	117	0%	107	25.2%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PTGR1	22949	genome.wustl.edu	37	9	114348376	114348376	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012212.3	-1	reviewed	p.T93	0.000	249	0%	287	15.3%	150	0%	-	-	-	superfamily_GroES_like
DNAJC25	548645	genome.wustl.edu	37	9	114409471	114409471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001015882.2	+1	provisional	p.R141C	1.000	101	0%	218	13.8%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Chaperone J-domain
UGCG	7357	genome.wustl.edu	37	9	114695192	114695192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003358.1	+1	reviewed	p.A367V	1.000	170	0%	213	30.5%	19	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SUSD1	64420	genome.wustl.edu	37	9	114820861	114820861	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000355396	-1	known	p.R636C	0.941	280	0%	348	28.7%	19	0%	-	-	-	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115337473	115337473	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133465.2	+1	predicted	p.Q371	1.000	94	0%	117	40.2%	6	0%	-	-	-	NULL
FKBP15	23307	genome.wustl.edu	37	9	115928409	115928409	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015258.1	-1	validated	p.T1203	0.997	16	0%	23	21.7%	69	0%	-	-	-	NULL
PRPF4	9128	genome.wustl.edu	37	9	116038824	116038824	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004697.3	+1	provisional	e2-1	0.189	237	0%	290	10.7%	0	-	-	-	-	-
BSPRY	54836	genome.wustl.edu	37	9	116130643	116130643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017688.2	+1	validated	p.A221V	0.522	111	0%	153	26.8%	32	0%	possibly_damaging(0.879)	tolerated(0.09)	deleterious(0.639)	NULL
C9orf43	257169	genome.wustl.edu	37	9	116186469	116186469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152786.1	+1	predicted	p.T227I	0.000	288	0%	273	17.6%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
C9orf43	257169	genome.wustl.edu	37	9	116186583	116186583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152786.1	+1	predicted	p.R265H	0.997	370	0%	345	32.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RGS3	5998	genome.wustl.edu	37	9	116224403	116224403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144488.4	+1	reviewed	p.A113T	0.000	108	0%	111	46.8%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZNF618	114991	genome.wustl.edu	37	9	116812267	116812267	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133374.2	+1	validated	p.C802	0.997	146	0.7%	159	33.3%	12	8.3%	-	-	-	HMMPfam_hATC
ZNF618	114991	genome.wustl.edu	37	9	116812342	116812342	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133374.2	+1	validated	p.S827	0.938	138	0%	139	34.5%	9	0%	-	-	-	HMMPfam_hATC
ZNF618	114991	genome.wustl.edu	37	9	116812368	116812368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133374.2	+1	validated	p.A836V	0.994	169	0%	166	12.7%	13	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_hATC
TNC	3371	genome.wustl.edu	37	9	117783444	117783444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002160.2	-1	validated	p.R2200W	1.000	68	0%	74	33.8%	429	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNC	3371	genome.wustl.edu	37	9	117819534	117819534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002160.2	-1	validated	p.A1493T	0.324	194	0%	249	34.1%	78	0%	benign(0.002)	tolerated(0.24)	neutral(0.037)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117825304	117825304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002160.2	-1	validated	p.R1309C	0.235	75	0%	60	35%	36	0%	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ASTN2	23245	genome.wustl.edu	37	9	119380748	119380748	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198187.3	-1	reviewed	p.L1070	0.849	278	0%	299	36.8%	3	0%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
ASTN2	23245	genome.wustl.edu	37	9	119488198	119488198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198187.3	-1	reviewed	p.K886N	0.990	164	0%	249	11.6%	0	-	possibly_damaging(0.663)	deleterious(0.03)	deleterious(0.599)	HMMSmart_SM00457
DBC1	1620	genome.wustl.edu	37	9	121929449	121929449	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014618.2	-1	validated	p.S733	1.000	239	0%	177	29.4%	0	-	-	-	-	NULL
DBC1	1620	genome.wustl.edu	37	9	121930364	121930364	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014618.2	-1	validated	p.C428	1.000	42	0%	30	36.7%	0	-	-	-	-	NULL
FBXW2	26190	genome.wustl.edu	37	9	123550514	123550514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012164.3	-1	reviewed	p.T8I	1.000	205	0%	232	35.3%	14	0%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
MORN5	254956	genome.wustl.edu	37	9	124936902	124936902	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198469.2	+1	validated	p.N145	0.972	110	0%	132	34.8%	3	0%	-	-	-	NULL
OR1L4	254973	genome.wustl.edu	37	9	125486937	125486937	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005235.1	+1	provisional	p.I223	0.084	671	0%	714	34.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5C1	392391	genome.wustl.edu	37	9	125551569	125551569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001923.1	+1	provisional	p.A120T	1.000	228	0%	261	33.3%	0	-	possibly_damaging(0.907)	deleterious(0.03)	deleterious(0.725)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
PDCL	5082	genome.wustl.edu	37	9	125585446	125585446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005388.3	-1	reviewed	p.R68H	1.000	196	0%	184	32.1%	49	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Phosducin,superfamily_Thioredoxin-like
GPR21	2844	genome.wustl.edu	37	9	125797091	125797091	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005294.1	+1	provisional	p.C82	1.000	70	0%	128	12.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RABGAP1	23637	genome.wustl.edu	37	9	125852604	125852604	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012197.3	+1	validated	p.N856	0.588	75	0%	104	31.7%	73	0%	-	-	-	NULL
LHX2	9355	genome.wustl.edu	37	9	126777612	126777612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004789.3	+1	reviewed	p.A179T	0.927	16	0%	15	33.3%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
LHX2	9355	genome.wustl.edu	37	9	126783459	126783459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004789.3	+1	reviewed	p.R270H	1.000	19	0%	49	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
OLFML2A	169611	genome.wustl.edu	37	9	127572586	127572586	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182487.2	+1	validated	p.N618	0.963	40	0%	48	25%	2	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
GOLGA1	2800	genome.wustl.edu	37	9	127652718	127652718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002077.3	-1	reviewed	p.A483T	1.000	215	0%	231	28.6%	19	0%	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	NULL
SCAI	286205	genome.wustl.edu	37	9	127781107	127781107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173690.4	-1	reviewed	p.A301T	1.000	387	0%	325	26.8%	0	-	possibly_damaging(0.643)	tolerated(0.06)	deleterious(0.548)	NULL
RABEPK	10244	genome.wustl.edu	37	9	127965346	127965346	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005833.3	+1	validated	e1+1	1.000	163	0%	270	29.3%	2	0%	-	-	-	-
GAPVD1	26130	genome.wustl.edu	37	9	128094284	128094284	+	Silent	SNP	G	G	A	rs183996407	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000431329	+1	known	p.R614Q	0.804	42	0%	107	29%	20	0%	-	-	-	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128109167	128109167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015635.2	+1	validated	p.A1066V	1.000	100	0%	136	30.1%	18	0%	benign(0.05)	tolerated(0.33)	neutral(0.027)	NULL
ANGPTL2	23452	genome.wustl.edu	37	9	129851353	129851353	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012098.2	-1	reviewed	p.N449	0.629	148	0%	136	11%	37	0%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C
ANGPTL2	23452	genome.wustl.edu	37	9	129870606	129870606	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012098.2	-1	reviewed	p.T135	0.930	38	0%	53	13.2%	39	0%	-	-	-	NULL
FAM129B	64855	genome.wustl.edu	37	9	130279287	130279287	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022833.2	-1	validated	p.A274	0.503	97	0%	190	33.2%	123	0%	-	-	-	NULL
SLC25A25	114789	genome.wustl.edu	37	9	130869716	130869716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006641.1	+1	validated	p.S502L	1.000	29	0%	27	14.8%	13	0%	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	HMMPfam_Mito_carr
GOLGA2	2801	genome.wustl.edu	37	9	131019980	131019980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004486.4	-1	reviewed	p.Y846F	1.000	117	0%	204	34.3%	96	0%	benign(0.134)	tolerated(0.06)	neutral(0.334)	NULL
ODF2	4957	genome.wustl.edu	37	9	131254769	131254769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002540.3	+1	reviewed	p.A510V	0.169	119	0%	104	32.7%	68	0%	benign(0.004)	tolerated(0.35)	neutral(0.021)	NULL
GLE1	2733	genome.wustl.edu	37	9	131271287	131271287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003722.1	+1	reviewed	p.A78T	0.001	97	0%	156	30.1%	37	0%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131345012	131345012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130438.1	+1	validated	p.R564C	0.779	133	0%	108	38%	39	0%	benign(0.288)	tolerated(0.09)	neutral(0.385)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131371405	131371405	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130438.1	+1	validated	p.R1534*	1.000	116	0%	135	17.8%	102	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131388789	131388789	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130438.1	+1	validated	p.A2133	0.843	75	0%	52	23.1%	146	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131395093	131395093	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130438.1	+1	validated	p.G2389	0.995	50	0%	44	20.5%	307	0%	-	-	-	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
C9orf114	51490	genome.wustl.edu	37	9	131587103	131587103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016390.2	-1	validated	p.R253H	1.000	22	0%	29	27.6%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF171,superfamily_Nucleic_acid_OB,superfamily_SSF75217
CCBL1	883	genome.wustl.edu	37	9	131597853	131597853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122671.1	-1	reviewed	p.R317C	0.939	33	0%	54	22.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
SH3GLB2	56904	genome.wustl.edu	37	9	131777084	131777084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020145.2	-1	provisional	p.R145H	1.000	64	0%	76	19.7%	52	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR,HMMSmart_SM00721
FAM73B	84895	genome.wustl.edu	37	9	131802777	131802777	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000413435	+1	known	p.G32	0.000	8	0.000	19	0.316	7	0%	-	-	-	NULL
FAM73B	84895	genome.wustl.edu	37	9	131812155	131812155	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032809.2	+1	predicted	p.S196	0.951	20	0%	39	35.9%	11	0%	-	-	-	HMMPfam_DUF2217
USP20	10868	genome.wustl.edu	37	9	132635786	132635786	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008563.3	+1	validated	p.R562	0.968	52	0%	52	38.5%	11	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
FNBP1	23048	genome.wustl.edu	37	9	132658261	132658261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015033.2	-1	reviewed	p.T568A	1.000	136	0%	237	12.7%	53	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
FNBP1	23048	genome.wustl.edu	37	9	132719725	132719725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015033.2	-1	reviewed	p.R143C	1.000	48	0%	50	32%	30	0%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	NULL
ABL1	25	genome.wustl.edu	37	9	133730285	133730285	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007313.2	+1	reviewed	p.T136	0.018	116	0%	168	35.7%	51	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ABL1	25	genome.wustl.edu	37	9	133730363	133730363	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007313.2	+1	reviewed	p.S162	0.018	121	0%	183	27.9%	24	4.1%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ABL1	25	genome.wustl.edu	37	9	133750381	133750381	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007313.2	+1	reviewed	p.K423	0.989	166	0%	198	38.4%	54	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NUP214	8021	genome.wustl.edu	37	9	134004681	134004681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005085.2	+1	reviewed	p.R137C	0.905	145	0%	192	28.1%	22	0%	possibly_damaging(0.905)	tolerated(0.07)	deleterious(0.678)	superfamily_WD40 repeat-like
PRRC2B	84726	genome.wustl.edu	37	9	134360133	134360133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013318.3	+1	validated	p.G1841S	0.979	250	0%	282	35.1%	73	0%	possibly_damaging(0.507)	tolerated(0.76)	neutral(0.171)	NULL
UCK1	83549	genome.wustl.edu	37	9	134404580	134404580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031432.2	-1	validated	p.I148T	1.000	19	0%	28	35.7%	98	0%	benign(0.204)	deleterious(0)	neutral(0.464)	HMMPfam_PRK,superfamily_SSF52540
RAPGEF1	2889	genome.wustl.edu	37	9	134473599	134473599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198679.1	-1	reviewed	p.T699M	1.000	10	0%	10	40%	42	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Ras_GEF
RAPGEF1	2889	genome.wustl.edu	37	9	134526260	134526260	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198679.1	-1	reviewed	p.T47	0.306	261	0%	185	32.4%	10	0%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135139968	135139968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015046.5	-1	reviewed	p.Q2564H	1.000	92	0%	92	42.4%	43	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TTF1	7270	genome.wustl.edu	37	9	135251377	135251377	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000245588	-1	known	p.R880*	0.000	55	0%	63	20.6%	40	0%	-	-	-	NULL
GTF3C5	9328	genome.wustl.edu	37	9	135926228	135926228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122823.1	+1	validated	p.R211W	1.000	50	0%	57	35.1%	223	0.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tau95
SURF6	6838	genome.wustl.edu	37	9	136200595	136200595	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006753.4	-1	reviewed	p.R118*	0.760	16	0%	25	20%	50	0%	-	-	-	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136289444	136289444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139025.3	+1	reviewed	p.R59H	0.000	30	0%	46	13%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136298548	136298548	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139025.3	+1	reviewed	p.A381	0.097	4	0.000	23	0.261	0	-	-	-	-	superfamily_TSP-1 type 1 repeat
COL5A1	1289	genome.wustl.edu	37	9	137688248	137688248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000093.3	+1	reviewed	p.G943D	1.000	27	0%	30	13.3%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
OLFM1	10439	genome.wustl.edu	37	9	137990194	137990194	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014279.4	+1	validated	p.A155	1.000	11	0%	28	46.4%	0	-	-	-	-	NULL
GLT6D1	360203	genome.wustl.edu	37	9	138517933	138517933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182974.2	-1	provisional	p.A80G	0.083	57	0%	80	35%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_Glyco_transf_6,superfamily_SSF53448
CAMSAP1	157922	genome.wustl.edu	37	9	138710412	138710412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015447.3	-1	validated	p.R1337H	0.971	31	0%	18	22.2%	44	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138742184	138742184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015447.3	-1	validated	p.A311V	0.999	90	0%	138	26.1%	17	0%	possibly_damaging(0.712)	tolerated(0.31)	neutral(0.285)	superfamily_Calponin-homology domain CH-domain
SNAPC4	6621	genome.wustl.edu	37	9	139286444	139286444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003086.2	-1	validated	p.A309T	0.724	7	0.000	19	0.368	16	0%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
SDCCAG3	10807	genome.wustl.edu	37	9	139298559	139298559	+	Missense_Mutation	SNP	C	C	T	rs190302340	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039707.1	-1	validated	p.V386M	0.080	26	0%	30	43.3%	79	0%	possibly_damaging(0.583)	tolerated(0.07)	deleterious(0.520)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139361443	139361443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014866.1	-1	validated	p.A1299T	0.000	10	0%	22	27.3%	54	0%	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
ENTPD8	377841	genome.wustl.edu	37	9	140330219	140330219	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033113.1	-1	validated	p.S371	0.001	13	0.000	9	0.444	0	-	-	-	-	HMMPfam_GDA1_CD39
EHMT1	79813	genome.wustl.edu	37	9	140611261	140611261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000460843	+1	known	p.R90Q	0.125	50	0%	61	27.9%	34	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140671148	140671148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000460843	+1	known	p.A624T	0.660	45	0%	51	39.2%	46	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140706000	140706000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000460843	+1	known	p.A934T	1.000	30	0%	19	42.1%	52	0%	possibly_damaging(0.5)	deleterious(0.02)	deleterious(0.550)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
EHMT1	79813	genome.wustl.edu	37	9	140706052	140706052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000460843	+1	known	p.R951H	1.000	29	0%	17	52.9%	46	0%	possibly_damaging(0.741)	tolerated(0.28)	neutral(0.303)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CACNA1B	774	genome.wustl.edu	37	9	140852046	140852046	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000277549	+1	known	e10-1	1.000	22	0%	20	20%	0	-	-	-	-	-
CACNA1B	774	genome.wustl.edu	37	9	141006875	141006875	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000718.2	+1	validated	p.D1818	0.998	34	0%	24	29.2%	0	-	-	-	-	NULL
TUBB8	347688	genome.wustl.edu	37	10	93797	93797	+	Missense_Mutation	SNP	C	C	T	rs71485064		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177987.2	-1	validated	p.V179M	1.000	163	0%	142	29.6%	0	-	possibly_damaging(0.532)	deleterious(0)	deleterious(0.625)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
ENSG00000173876	0	genome.wustl.edu	37	10	94703	94703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000272035	-1	known	p.A44V	0.578	31	0%	23	26.1%	1	0%	benign(0.016)	-	-	NULL
DIP2C	22982	genome.wustl.edu	37	10	332238	332238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014974.2	-1	reviewed	p.P1365L	1.000	400	0%	375	26.4%	6	0%	benign(0.055)	tolerated(1)	neutral(0.004)	HMMPfam_AMP-binding,superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	370863	370863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000381503	-1	known	p.R190C	0.004	60	0%	59	32.2%	0	-	unknown(0)	-	-	NULL
DIP2C	22982	genome.wustl.edu	37	10	395390	395390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014974.2	-1	reviewed	p.A997V	0.993	24	0%	19	42.1%	7	0%	benign(0.003)	tolerated(0.12)	neutral(0.261)	superfamily_SSF56801
PFKP	5214	genome.wustl.edu	37	10	3145989	3145989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002627.3	+1	validated	p.A158V	0.005	41	0%	28	32.1%	300	0.3%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_PFK,superfamily_Phosphofructokinase
PITRM1	10531	genome.wustl.edu	37	10	3207721	3207721	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014889.2	-1	validated	e5-2	1.000	48	0%	75	32%	0	-	-	-	-	-
AKR1E2	83592	genome.wustl.edu	37	10	4877928	4877928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040177.1	+1	provisional	p.R129Q	0.946	27	0%	48	14.6%	24	0%	possibly_damaging(0.927)	tolerated(0.33)	neutral(0.399)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
FBXO18	84893	genome.wustl.edu	37	10	5948196	5948196	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032807.3	+1	reviewed	p.P169	0.002	30	0%	70	35.7%	26	0%	-	-	-	NULL
PFKFB3	5209	genome.wustl.edu	37	10	6258095	6258095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004566.3	+1	validated	p.A103T	1.000	38	0%	42	26.2%	83	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRKCQ	5588	genome.wustl.edu	37	10	6528025	6528025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006257.2	-1	reviewed	p.A291V	1.000	60	0%	52	17.3%	0	-	benign(0.175)	tolerated(0.24)	neutral(0.053)	NULL
ITIH2	3698	genome.wustl.edu	37	10	7769071	7769071	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002216.2	+1	validated	p.Q381	1.000	145	0%	176	34.7%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
TAF3	83860	genome.wustl.edu	37	10	8006053	8006053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031923.2	+1	provisional	p.R194W	1.000	154	0%	238	38.7%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP6NL	9712	genome.wustl.edu	37	10	11505240	11505240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080491.2	-1	validated	p.A580T	0.003	59	0%	64	26.6%	19	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
ECHDC3	79746	genome.wustl.edu	37	10	11805424	11805424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024693.4	+1	validated	p.T265S	0.208	12	0%	21	33.3%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_ClpP/crotonase
UPF2	26019	genome.wustl.edu	37	10	11978641	11978641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015542.2	-1	reviewed	p.L1150P	1.000	311	0%	276	28.6%	35	0%	possibly_damaging(0.858)	tolerated(0.21)	neutral(0.375)	HMMPfam_Upf2
UPF2	26019	genome.wustl.edu	37	10	11997263	11997263	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015542.2	-1	reviewed	p.R940*	1.000	113	0%	123	28.5%	12	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
UPF2	26019	genome.wustl.edu	37	10	12001308	12001308	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015542.2	-1	reviewed	p.Y744	0.989	157	0%	234	36.3%	10	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
UPF2	26019	genome.wustl.edu	37	10	12071195	12071195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015542.2	-1	reviewed	p.R232C	1.000	104	0%	167	31.1%	11	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
UCMA	221044	genome.wustl.edu	37	10	13264116	13264116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145314.1	-1	provisional	p.R135H	1.000	47	0%	39	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCLRE1C	64421	genome.wustl.edu	37	10	14976461	14976461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033855.1	-1	reviewed	p.Y199F	0.885	620	0%	826	32.1%	12	0%	benign(0.025)	tolerated(0.32)	neutral(0.025)	NULL
MEIG1	644890	genome.wustl.edu	37	10	15014567	15014567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080836.2	+1	validated	p.T65M	1.000	105	0%	143	26.6%	2	0%	possibly_damaging(0.951)	tolerated(0.23)	neutral(0.435)	NULL
ACBD7	414149	genome.wustl.edu	37	10	15120720	15120720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039844.2	-1	validated	p.A55S	1.000	78	0%	153	28.1%	5	0%	possibly_damaging(0.523)	tolerated(0.08)	deleterious(0.476)	HMMPfam_ACBP,superfamily_Acyl-CoA binding protein
CUBN	8029	genome.wustl.edu	37	10	16882886	16882886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081.3	-1	reviewed	p.D3275G	1.000	225	0%	263	17.9%	3	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16911787	16911787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081.3	-1	reviewed	p.G3101D	0.998	86	0%	133	36.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16975118	16975118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081.3	-1	reviewed	p.T2031M	0.002	113	0%	167	38.9%	1	0%	probably_damaging(0.977)	tolerated(0.12)	deleterious(0.679)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17113547	17113547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081.3	-1	reviewed	p.V835M	0.001	184	0.5%	215	42.8%	1	0%	benign(0.013)	tolerated(0.15)	neutral(0.241)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MRC1	4360	genome.wustl.edu	37	10	17869583	17869583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009567.1	+1	reviewed	p.A169V	0.655	354	0%	409	31.1%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Kringle-like
MRC1	4360	genome.wustl.edu	37	10	17922587	17922587	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009567.1	+1	reviewed	p.R924*	0.982	312	0%	384	32.3%	0	-	-	-	-	HMMPfam_Lectin_C,superfamily_C-type lectin-like
CACNB2	783	genome.wustl.edu	37	10	18807305	18807305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201596.2	+1	reviewed	p.R282Q	1.000	260	0%	323	38.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEBL	10529	genome.wustl.edu	37	10	21148739	21148739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006393.2	-1	reviewed	p.K234R	1.000	153	0%	142	31.7%	1	0%	benign(0.123)	tolerated(0.08)	neutral(0.310)	HMMPfam_Nebulin,HMMSmart_SM00227
SPAG6	9576	genome.wustl.edu	37	10	22657522	22657522	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012443.2	+1	reviewed	p.T129	0.000	108	0%	82	28%	0	-	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
MSRB2	22921	genome.wustl.edu	37	10	23408272	23408272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000376513	+1	known	p.R142H	0.058	130	0%	171	39.2%	79	0%	unknown(0)	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24810752	24810752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019590.3	+1	validated	p.R784C	1.000	90	0%	71	38%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENKUR	219670	genome.wustl.edu	37	10	25304839	25304839	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145010.2	-1	provisional	p.C9	1.000	132	0%	169	29%	7	0%	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25701316	25701316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020752.2	+1	validated	p.R417*	1.000	250	0%	245	32.2%	0	-	-	-	-	NULL
MYO3A	53904	genome.wustl.edu	37	10	26377188	26377188	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017433.4	+1	reviewed	p.A472	0.996	273	0%	184	30.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26414328	26414328	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017433.4	+1	reviewed	p.C635	1.000	114	0%	134	32.1%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26417467	26417467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017433.4	+1	reviewed	p.Q754H	1.000	68	0%	75	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ARMC4	55130	genome.wustl.edu	37	10	28233189	28233189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018076.2	-1	validated	p.R569W	0.999	50	0%	43	18.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
WAC	51322	genome.wustl.edu	37	10	28897212	28897212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016628.3	+1	reviewed	p.A340fs	0.997	-	-	-	-	-	-	-	-	-	NULL
BAMBI	25805	genome.wustl.edu	37	10	28971210	28971210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012342.2	+1	reviewed	p.G221	0.958	84	0%	154	33.8%	40	0%	-	-	-	NULL
SVIL	6840	genome.wustl.edu	37	10	29776110	29776110	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021738.2	-1	reviewed	p.N1489	0.987	44	0%	41	14.6%	15	0%	-	-	-	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
KIAA1462	57608	genome.wustl.edu	37	10	30318297	30318297	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020848.2	-1	validated	p.P260	0.000	124	0%	167	27.5%	6	0%	-	-	-	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30749686	30749686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005204.2	+1	reviewed	p.R442H	0.997	98	0%	109	42.2%	7	0%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	NULL
LOC645954	645954	genome.wustl.edu	37	10	30978366	30978366	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_017086.3	+1	model	NULL	1.000	99	0%	100	21%	0	-	-	-	-	-
ZEB1	6935	genome.wustl.edu	37	10	31809205	31809205	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030751.5	+1	reviewed	p.P314	0.610	207	0.5%	206	14.1%	4	0%	-	-	-	NULL
ZEB1	6935	genome.wustl.edu	37	10	31816159	31816159	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030751.5	+1	reviewed	p.E1114	0.993	178	0%	213	34.3%	5	0%	-	-	-	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32150357	32150357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018287.5	-1	provisional	p.S305I	0.906	348	0%	251	35.1%	18	0%	possibly_damaging(0.564)	tolerated(0.05)	deleterious(0.538)	NULL
NRP1	8829	genome.wustl.edu	37	10	33619722	33619722	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003873.5	-1	validated	p.C54	1.000	36	0%	55	29.1%	9	0%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CCNY	219771	genome.wustl.edu	37	10	35819157	35819157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145012.4	+1	validated	p.A189T	1.000	88	0%	98	18.4%	141	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
NAMPTL	646309	genome.wustl.edu	37	10	36811893	36811893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000440465	-1	known	p.L424M	1.000	182	0%	200	30.5%	4	0%	possibly_damaging(0.507)	deleterious(0.02)	deleterious(0.552)	HMMPfam_NAPRTase
ANKRD30A	91074	genome.wustl.edu	37	10	37508305	37508305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052997.2	+1	validated	p.A1166D	0.032	175	0%	227	36.1%	0	-	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	NULL
LOC340947	340947	genome.wustl.edu	37	10	38369046	38369046	+	Missense_Mutation	SNP	G	G	T	rs72793745	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001131609.2	-1	model	p.R297S	0.999	60	0%	98	29.6%	0	-	-	-	-	HMMPfam_Paf67
LOC340947	340947	genome.wustl.edu	37	10	38369066	38369066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001131609.2	-1	model	p.R290H	1.000	51	0%	85	29.4%	0	-	-	-	-	HMMPfam_Paf67
ZNF37A	7587	genome.wustl.edu	37	10	38407745	38407745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007094.2	+1	validated	p.E556K	0.123	134	0%	153	35.9%	4	0%	possibly_damaging(0.435)	-	-	NULL
RET	5979	genome.wustl.edu	37	10	43596115	43596115	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020975.4	+1	reviewed	p.L94	0.984	9	0.000	10	0.400	0	-	-	-	-	NULL
RASGEF1A	221002	genome.wustl.edu	37	10	43693634	43693634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145313.2	-1	validated	p.D348N	1.000	31	0.000	8	0.500	0	-	probably_damaging(0.994)	tolerated(0.05)	deleterious(0.797)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
ZNF32	7580	genome.wustl.edu	37	10	44139579	44139579	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005368.1	-1	validated	p.C247	0.578	52	0%	90	35.6%	120	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RASSF4	83937	genome.wustl.edu	37	10	45480314	45480314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032023.3	+1	reviewed	p.A143T	1.000	30	0%	30	33.3%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GPRIN2	9721	genome.wustl.edu	37	10	46999717	46999717	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014696.3	+1	validated	p.H279	0.153	24	0%	34	29.4%	0	-	-	-	-	NULL
RBP3	5949	genome.wustl.edu	37	10	48382046	48382046	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002900.2	-1	reviewed	p.S1201	0.000	29	0%	22	18.2%	0	-	-	-	-	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
ARHGAP22	58504	genome.wustl.edu	37	10	49667798	49667798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021226.2	-1	validated	p.M196I	0.998	38	0%	48	35.4%	4	0%	benign(0.406)	deleterious(0.02)	deleterious(0.514)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
C10orf71	118461	genome.wustl.edu	37	10	50531669	50531669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135196.1	+1	validated	p.A360V	0.000	203	0%	181	26.5%	0	-	possibly_damaging(0.661)	tolerated(0.41)	neutral(0.248)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50684283	50684283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000124.2	-1	reviewed	p.R787K	0.895	228	0%	237	26.2%	1	0%	probably_damaging(0.965)	tolerated(0.12)	deleterious(0.667)	HMMPfam_SNF2_N
ERCC6	2074	genome.wustl.edu	37	10	50732596	50732596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000124.2	-1	reviewed	p.A294T	0.000	165	0%	158	22.8%	4	0%	benign(0.322)	tolerated(0.39)	neutral(0.117)	NULL
SLC18A3	6572	genome.wustl.edu	37	10	50819832	50819832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003055.2	+1	reviewed	p.A349V	1.000	30	0%	25	20%	0	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PARG	8505	genome.wustl.edu	37	10	51069665	51069665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003631.2	-1	reviewed	p.T725I	1.000	52	0%	67	28.4%	8	0%	possibly_damaging(0.644)	deleterious(0.01)	deleterious(0.631)	HMMPfam_PARG_cat
PCDH15	65217	genome.wustl.edu	37	10	55566760	55566760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142771.1	-1	reviewed	p.G1543D	1.000	181	0%	255	26.3%	0	-	benign(0.195)	deleterious(0)	neutral(0.463)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55782726	55782726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142763.1	-1	reviewed	p.V823M	0.996	280	0%	332	34%	0	-	possibly_damaging(0.546)	tolerated(0.08)	deleterious(0.485)	superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55892736	55892736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000373956	-1	known	p.C41*	1.000	121	0%	126	30.2%	0	-	-	-	-	NULL
FAM13C	220965	genome.wustl.edu	37	10	61062589	61062589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001143773.1	-1	validated	p.A77V	1.000	244	0%	289	13.1%	2	0%	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
FAM13C	220965	genome.wustl.edu	37	10	61112177	61112177	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198215.3	-1	validated	p.A59T	0.000	50	0%	49	36.7%	0	-	-	-	-	NULL
EGR2	1959	genome.wustl.edu	37	10	64575693	64575693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000399.3	-1	reviewed	p.A33T	1.000	52	0%	93	35.5%	1	0%	possibly_damaging(0.63)	tolerated(0.27)	neutral(0.254)	NULL
NRBF2	29982	genome.wustl.edu	37	10	64913800	64913800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030759.3	+1	validated	p.S229N	1.000	102	0%	136	32.4%	33	0%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_DUF1875
JMJD1C	221037	genome.wustl.edu	37	10	64974535	64974535	+	Silent	SNP	C	C	T	rs142118527	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032776.1	-1	validated	p.S464	0.045	328	0.3%	456	30.7%	3	0%	-	-	-	NULL
DNAJC12	56521	genome.wustl.edu	37	10	69571262	69571262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201262.1	-1	reviewed	p.A106V	0.001	172	0%	206	33%	0	-	unknown(0)	-	-	NULL
MYPN	84665	genome.wustl.edu	37	10	69902806	69902806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032578.2	+1	validated	p.R338C	1.000	172	0.6%	252	13.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TMEM14D	645203	genome.wustl.edu	37	10	70304480	70304480	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_928242.3	-1	model	p.P37	0.000	83	0%	123	35.8%	0	-	-	-	-	HMMPfam_Tmemb_14
TET1	80312	genome.wustl.edu	37	10	70412277	70412277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030625.2	+1	validated	p.A1463T	1.000	148	0%	166	31.3%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TET1	80312	genome.wustl.edu	37	10	70451194	70451194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030625.2	+1	validated	p.A2012T	0.999	155	0%	195	12.3%	10	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TET1	80312	genome.wustl.edu	37	10	70451245	70451245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030625.2	+1	validated	p.A2029T	1.000	131	0%	126	33.3%	11	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DDX21	9188	genome.wustl.edu	37	10	70730039	70730039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004728.2	+1	reviewed	p.R440H	0.999	72	0%	72	31.9%	60	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HKDC1	80201	genome.wustl.edu	37	10	70992621	70992621	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025130.3	+1	validated	p.Q110*	1.000	82	0%	83	28.9%	3	0%	-	-	-	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain
HKDC1	80201	genome.wustl.edu	37	10	71005974	71005974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025130.3	+1	validated	p.V339M	1.000	77	0%	110	13.6%	6	0%	benign(0.422)	tolerated(0.11)	neutral(0.409)	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
HKDC1	80201	genome.wustl.edu	37	10	71008287	71008287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025130.3	+1	validated	p.A458V	1.000	48	0%	48	20.8%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
HKDC1	80201	genome.wustl.edu	37	10	71010153	71010153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025130.3	+1	validated	p.A560T	0.998	113	0%	124	25%	4	0%	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain
HK1	3098	genome.wustl.edu	37	10	71129037	71129037	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033497.2	+1	reviewed	p.G216	0.998	85	0%	109	27.5%	86	0%	-	-	-	HMMPfam_Hexokinase_1,superfamily_SSF53067
HK1	3098	genome.wustl.edu	37	10	71139843	71139843	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033497.2	+1	reviewed	p.T423	1.000	40	0%	61	21.3%	84	0%	-	-	-	HMMPfam_Hexokinase_2,superfamily_SSF53067
NEUROG3	50674	genome.wustl.edu	37	10	71332745	71332745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020999.3	-1	reviewed	p.R19W	0.359	45	0%	40	22.5%	0	-	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	NULL
AIFM2	84883	genome.wustl.edu	37	10	71883738	71883738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032797.4	-1	reviewed	p.V35I	0.001	15	0%	18	22.2%	37	0%	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
SAR1A	56681	genome.wustl.edu	37	10	71912321	71912321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142648.1	-1	validated	p.A170T	0.971	27	0%	58	29.3%	174	0%	benign(0.002)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPA1	5464	genome.wustl.edu	37	10	71969339	71969339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021129.3	-1	reviewed	p.A205V	1.000	140	0%	206	21.8%	516	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Pyrophosphatase,superfamily_Pyrophosphatase
UNC5B	219699	genome.wustl.edu	37	10	73039671	73039671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170744.3	+1	validated	p.Y58C	1.000	66	0%	56	41.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,superfamily_Immunoglobulin
SLC29A3	55315	genome.wustl.edu	37	10	73082652	73082652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000373189	+1	known	p.E47D	0.999	49	0%	81	37%	4	0%	benign(0.15)	tolerated(0.14)	neutral(0.263)	NULL
CDH23	64072	genome.wustl.edu	37	10	73492106	73492106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022124.5	+1	reviewed	p.A1360S	1.000	3	0.000	19	0.316	0	-	benign(0.013)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73539107	73539107	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022124.5	+1	reviewed	p.G1757	0.994	31	0%	26	42.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73556971	73556971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022124.5	+1	reviewed	p.P2275S	1.000	11	0%	14	42.9%	0	-	benign(0.169)	tolerated(0.44)	neutral(0.028)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PSAP	5660	genome.wustl.edu	37	10	73579374	73579374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042465.1	-1	reviewed	p.V403M	0.003	56	0%	69	24.6%	1145	0%	possibly_damaging(0.822)	deleterious(0.03)	deleterious(0.675)	NULL
MCU	90550	genome.wustl.edu	37	10	74631334	74631334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138357.1	+1	provisional	p.R286H	1.000	195	0%	284	32%	28	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DUF607
PLA2G12B	84647	genome.wustl.edu	37	10	74695492	74695492	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032562.2	-1	validated	p.A157	0.998	164	0%	170	10.6%	0	-	-	-	-	HMMPfam_PLA2G12,superfamily_PhospholipaseA2
PLA2G12B	84647	genome.wustl.edu	37	10	74700926	74700926	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032562.2	-1	validated	e3+1	1.000	212	0%	279	23.7%	0	-	-	-	-	-
DNAJC9	23234	genome.wustl.edu	37	10	75006583	75006583	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015190.3	-1	provisional	p.L62	1.000	74	0%	57	28.1%	111	0%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1
USP54	159195	genome.wustl.edu	37	10	75265139	75265139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152586.3	-1	provisional	p.P1366H	0.991	52	0%	89	28.1%	46	0%	benign(0.267)	deleterious(0.03)	neutral(0.393)	NULL
USP54	159195	genome.wustl.edu	37	10	75294366	75294366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152586.3	-1	provisional	p.R436Q	1.000	97	0%	125	36.8%	2	0%	possibly_damaging(0.892)	tolerated(0.3)	neutral(0.380)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75407958	75407958	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114133.1	-1	validated	p.S484	0.931	13	0%	19	57.9%	0	-	-	-	-	NULL
KIAA0913	23053	genome.wustl.edu	37	10	75557327	75557329	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	GTG	GTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015037.2	+1	validated	p.SG1209in_frame_delR	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA0913	23053	genome.wustl.edu	37	10	75557550	75557550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015037.2	+1	validated	p.R1225H	1.000	19	0%	49	38.8%	61	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PLAU	5328	genome.wustl.edu	37	10	75675080	75675080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002658.3	+1	reviewed	p.P348S	1.000	87	0%	135	40%	30	0%	benign(0.18)	tolerated(0.12)	neutral(0.277)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
VCL	7414	genome.wustl.edu	37	10	75834528	75834528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014000.2	+1	reviewed	p.N217S	0.999	286	0%	377	27.1%	49	0%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
KAT6B	23522	genome.wustl.edu	37	10	76603089	76603089	+	Silent	SNP	C	C	T	rs184609018	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012330.2	+1	validated	p.R158	0.197	117	0%	133	33.8%	6	0%	-	-	-	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
KAT6B	23522	genome.wustl.edu	37	10	76790785	76790785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012330.2	+1	validated	p.G2068D	1.000	90	0%	113	15%	32	0%	probably_damaging(0.999)	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78651324	78651324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000372403	-1	known	p.W993*	1.000	42	0%	53	26.4%	0	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78669850	78669850	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000372421	-1	known	p.R938*	0.668	60	0%	65	33.8%	5	0%	-	-	-	NULL
DLG5	9231	genome.wustl.edu	37	10	79576821	79576821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004747.3	-1	reviewed	p.R1273H	1.000	81	0%	68	30.9%	36	0%	possibly_damaging(0.726)	deleterious(0)	deleterious(0.709)	NULL
POLR3A	11128	genome.wustl.edu	37	10	79781379	79781379	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007055.3	-1	validated	p.S370	0.292	150	0%	183	29%	13	0%	-	-	-	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_RPOLA_N,superfamily_SSF64484
RPS24	6229	genome.wustl.edu	37	10	79797001	79797001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142285.1	+1	reviewed	p.R110H	1.000	60	0%	83	30.1%	8003	0%	benign(0.013)	tolerated(0.13)	neutral(0.253)	NULL
DYDC1	143241	genome.wustl.edu	37	10	82098286	82098286	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138812.2	-1	provisional	p.S147	0.786	125	0%	120	10%	0	-	-	-	-	NULL
FAM213A	84293	genome.wustl.edu	37	10	82182235	82182235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032333.4	+1	validated	p.R81W	1.000	109	0%	132	31.1%	177	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiordxn-like_fd
LOC100288691	100288691	genome.wustl.edu	37	10	85841362	85841362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343025.1	+1	model	p.R140C	0.002	29	0%	34	35.3%	3	0%	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527
GHITM	27069	genome.wustl.edu	37	10	85904637	85904637	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014394.2	+1	validated	p.W116*	1.000	66	0%	107	26.2%	39	0%	-	-	-	HMMPfam_UPF0005
CDHR1	92211	genome.wustl.edu	37	10	85960411	85960411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033100.2	+1	reviewed	p.G165S	0.999	12	0%	11	45.5%	6	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LRIT1	26103	genome.wustl.edu	37	10	85992220	85992220	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015613.2	-1	validated	p.S445	0.577	51	0%	46	41.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FAM190B	54462	genome.wustl.edu	37	10	86131564	86131564	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018999.2	+1	validated	p.K252	1.000	213	0%	311	32.8%	13	0%	-	-	-	NULL
GRID1	2894	genome.wustl.edu	37	10	87482865	87482865	+	Missense_Mutation	SNP	C	C	T	rs191266908	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017551.2	-1	reviewed	p.R631H	1.000	34	0%	39	17.9%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
WAPAL	23063	genome.wustl.edu	37	10	88260013	88260013	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015045.2	-1	validated	p.S329	0.999	316	0%	320	28.7%	37	0%	-	-	-	NULL
LDB3	11155	genome.wustl.edu	37	10	88451760	88451760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007078.2	+1	reviewed	p.R266H	1.000	32	0%	22	31.8%	0	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	NULL
LDB3	11155	genome.wustl.edu	37	10	88485989	88485989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007078.2	+1	reviewed	p.D692N	1.000	37	0%	65	47.7%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
AGAP11	119385	genome.wustl.edu	37	10	88769245	88769245	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133447.1	+1	validated	p.S412	0.873	158	0%	189	36.5%	0	-	-	-	-	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP
FAM35A	54537	genome.wustl.edu	37	10	88946843	88946843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019054.2	+1	validated	p.P732S	1.000	114	0%	169	26.6%	32	0%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000371953	+1	known	p.R130Q	1.000	328	0%	404	71.8%	152	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
RNLS	55328	genome.wustl.edu	37	10	90034737	90034737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018363.3	-1	validated	p.A310V	0.000	113	0%	136	26.5%	1	0%	unknown(0)	tolerated(0.21)	-	NULL
FAS	355	genome.wustl.edu	37	10	90774069	90774069	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000043.3	+1	reviewed	p.A290	0.000	159	0%	202	31.7%	6	0%	-	-	-	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
LIPA	3988	genome.wustl.edu	37	10	90984946	90984946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000235.2	-1	reviewed	p.R193M	0.995	358	0%	409	35.9%	28	0%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
IFIT5	24138	genome.wustl.edu	37	10	91177128	91177128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012420.2	+1	validated	p.A58T	1.000	137	0%	198	30.8%	17	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
IFIT5	24138	genome.wustl.edu	37	10	91177467	91177467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012420.2	+1	validated	p.P171S	1.000	168	0%	274	28.1%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
SLC16A12	387700	genome.wustl.edu	37	10	91196037	91196037	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_213606.3	-1	validated	p.A326	0.008	97	0%	111	16.2%	1	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CYP26A1	1592	genome.wustl.edu	37	10	94834664	94834664	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000783.3	+1	reviewed	p.V181	1.000	23	0%	16	68.8%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CEP55	55165	genome.wustl.edu	37	10	95263065	95263065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127182.1	+1	validated	p.V127I	0.001	171	0%	270	34.1%	55	0%	benign(0.008)	tolerated(0.85)	neutral(0.001)	NULL
PLCE1	51196	genome.wustl.edu	37	10	95790932	95790932	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016341.3	+1	reviewed	p.T43	0.000	218	0%	281	34.5%	0	-	-	-	-	NULL
PLCE1	51196	genome.wustl.edu	37	10	96014744	96014744	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016341.3	+1	reviewed	p.T1164	0.000	578	0%	517	36.2%	3	0%	-	-	-	NULL
NOC3L	64318	genome.wustl.edu	37	10	96112792	96112792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022451.9	-1	provisional	p.R240H	1.000	359	0%	415	40%	14	0%	probably_damaging(1)	tolerated(0.44)	deleterious(0.512)	HMMPfam_NOC3p
CYP2C9	1559	genome.wustl.edu	37	10	96748711	96748711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000771.3	+1	reviewed	p.L467I	0.000	290	0%	313	27.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_p450,superfamily_Cytochrome P450
SORBS1	10580	genome.wustl.edu	37	10	97082509	97082509	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001034956.1	-1	validated	p.S824	1.000	175	0%	135	12.6%	1	0%	-	-	-	superfamily_SH3
SORBS1	10580	genome.wustl.edu	37	10	97096778	97096778	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001034954.1	-1	validated	p.R1047*	0.004	52	0%	48	12.5%	0	-	-	-	-	NULL
SORBS1	10580	genome.wustl.edu	37	10	97174294	97174294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001034954.1	-1	validated	p.R256H	0.934	53	0%	47	42.6%	1	0%	benign(0.012)	tolerated(0.25)	neutral(0.037)	NULL
CC2D2B	387707	genome.wustl.edu	37	10	97776059	97776059	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001732.3	+1	validated	p.T170	0.989	51	0%	47	17%	0	-	-	-	-	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97918206	97918206	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000371192	+1	known	p.T709	0.799	155	0%	174	35.6%	5	0%	-	-	-	NULL
SLIT1	6585	genome.wustl.edu	37	10	98764523	98764523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003061.2	-1	validated	p.A1213T	1.000	30	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
MMS19	64210	genome.wustl.edu	37	10	99218587	99218587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022362.4	-1	validated	p.R1012H	1.000	39	0%	50	22%	64	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
MMS19	64210	genome.wustl.edu	37	10	99219419	99219419	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000444411	-1	known	p.P27L	0.999	18	0%	28	28.6%	55	0%	-	-	-	NULL
AVPI1	60370	genome.wustl.edu	37	10	99439439	99439439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021732.2	-1	validated	p.R75H	1.000	25	0%	18	33.3%	17	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
PYROXD2	84795	genome.wustl.edu	37	10	100150369	100150369	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032709.2	-1	validated	p.G426	0.998	93	0%	82	9.8%	0	-	-	-	-	superfamily_SSF51905
PYROXD2	84795	genome.wustl.edu	37	10	100159862	100159862	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032709.2	-1	validated	p.A156	0.998	30	0%	36	30.6%	5	0%	-	-	-	superfamily_SSF51905
HPS1	3257	genome.wustl.edu	37	10	100195468	100195468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000195.2	-1	reviewed	p.T60M	1.000	61	1.6%	69	36.2%	107	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
HPSE2	60495	genome.wustl.edu	37	10	100380397	100380397	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021828.4	-1	reviewed	p.G389	1.000	47	0%	32	28.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_79n
GOT1	2805	genome.wustl.edu	37	10	101157371	101157371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002079.2	-1	reviewed	p.G392D	1.000	185	0%	203	26.1%	90	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ENTPD7	57089	genome.wustl.edu	37	10	101439530	101439530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020354.3	+1	validated	p.R149H	0.960	308	0%	329	13.4%	9	0%	possibly_damaging(0.938)	tolerated(0.21)	neutral(0.427)	HMMPfam_GDA1_CD39
ABCC2	1244	genome.wustl.edu	37	10	101567940	101567940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000392.3	+1	reviewed	p.R590H	1.000	166	0%	183	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNMBP	23268	genome.wustl.edu	37	10	101716391	101716391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015221.2	-1	validated	p.W280*	1.000	193	0%	237	33.3%	2	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
DNMBP-AS1	100188954	genome.wustl.edu	37	10	101717021	101717021	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_024130.1	+1	provisional	NULL	0.000	21	0%	35	57.1%	0	-	-	-	-	-
CHUK	1147	genome.wustl.edu	37	10	101953117	101953117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001278.3	-1	reviewed	p.W682*	1.000	167	0%	264	37.5%	26	0%	-	-	-	NULL
FBXW4	6468	genome.wustl.edu	37	10	103372106	103372106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022039.3	-1	reviewed	p.R322H	0.997	56	0%	47	12.8%	93	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
MGEA5	10724	genome.wustl.edu	37	10	103550782	103550782	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012215.3	-1	validated	p.G775	1.000	71	0%	193	32.6%	67	0%	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
LDB1	8861	genome.wustl.edu	37	10	103868806	103868806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113407.1	-1	validated	p.A329T	1.000	55	0%	68	30.9%	147	0%	benign(0.027)	tolerated(0.33)	neutral(0.026)	HMMPfam_LIM_bind
PPRC1	23082	genome.wustl.edu	37	10	103901063	103901063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015062.3	+1	reviewed	p.G933D	0.983	59	0%	75	42.7%	35	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
PPRC1	23082	genome.wustl.edu	37	10	103904780	103904780	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015062.3	+1	reviewed	p.G1204	0.996	45	0%	56	35.7%	43	0%	-	-	-	NULL
CUEDC2	79004	genome.wustl.edu	37	10	104183456	104183456	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024040.2	-1	validated	p.S225	0.089	169	0%	269	11.2%	251	0%	-	-	-	NULL
SFXN2	118980	genome.wustl.edu	37	10	104493352	104493352	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178858.4	+1	validated	p.S271	0.001	166	0%	272	27.2%	11	0%	-	-	-	HMMPfam_Mtc
C10orf26	54838	genome.wustl.edu	37	10	104572753	104572753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083913.1	+1	validated	p.A253T	0.947	28	0%	39	23.1%	26	0%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
CNNM2	54805	genome.wustl.edu	37	10	104679288	104679288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017649.3	+1	validated	p.G351S	1.000	36	0%	51	31.4%	11	0%	benign(0.205)	tolerated(0.44)	neutral(0.033)	HMMPfam_DUF21
CNNM2	54805	genome.wustl.edu	37	10	104679700	104679700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017649.3	+1	validated	p.R488H	1.000	80	0%	105	37.1%	8	0%	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMPfam_CBS
LOC729081	729081	genome.wustl.edu	37	10	104935345	104935345	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343033.1	+1	model	p.D55	0.002	8	0.000	13	0.538	0	-	-	-	-	NULL
LOC729081	729081	genome.wustl.edu	37	10	104935362	104935362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343033.1	+1	model	p.A61V	0.002	7	0.000	14	0.357	0	-	-	-	-	NULL
PDCD11	22984	genome.wustl.edu	37	10	105201732	105201732	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014976.1	+1	validated	p.T1569	1.000	60	0%	93	49.5%	55	0%	-	-	-	NULL
PDCD11	22984	genome.wustl.edu	37	10	105204355	105204355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014976.1	+1	validated	p.T1787M	0.772	58	0%	82	18.3%	51	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_HAT,superfamily_SSF48452
COL17A1	1308	genome.wustl.edu	37	10	105795238	105795238	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000494.3	-1	reviewed	p.L1168	1.000	26	0%	25	44%	1	0%	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105942200	105942200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025145.5	-1	provisional	p.A738V	0.187	401	0%	345	16.2%	0	-	benign(0.033)	tolerated(1)	neutral(0.002)	superfamily_WD40 repeat-like
ITPRIP	85450	genome.wustl.edu	37	10	106075600	106075600	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033397.2	-1	provisional	p.E70	0.885	96	0%	59	33.9%	10	0%	-	-	-	NULL
SORCS3	22986	genome.wustl.edu	37	10	106865158	106865158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014978.1	+1	reviewed	p.A366V	1.000	133	0.8%	157	26.8%	0	-	benign(0.004)	tolerated(0.49)	neutral(0.011)	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108468992	108468992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013031.1	-1	reviewed	p.V378M	1.000	169	0%	237	26.2%	0	-	probably_damaging(0.976)	tolerated(0.5)	neutral(0.428)	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108536372	108536372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013031.1	-1	reviewed	p.R269W	1.000	177	0%	177	34.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108923725	108923725	+	Splice_Site	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013031.1	-1	reviewed	e1+2	1.000	40	0%	35	25.7%	0	-	-	-	-	-
DUSP5	1847	genome.wustl.edu	37	10	112269788	112269788	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004419.3	+1	reviewed	p.R253S	1.000	69	0%	108	33.3%	8	0%	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
PDCD4	27250	genome.wustl.edu	37	10	112641043	112641043	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014456.3	+1	reviewed	p.G32	0.999	182	0%	259	18.9%	58	0%	-	-	-	NULL
TECTB	6975	genome.wustl.edu	37	10	114059255	114059255	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_058222.1	+1	provisional	p.C280	0.937	54	1.9%	40	32.5%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_ZP
TCF7L2	6934	genome.wustl.edu	37	10	114919708	114919708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030756.4	+1	reviewed	p.R444C	1.000	142	0%	158	13.3%	2	0%	possibly_damaging(0.79)	deleterious(0)	deleterious(0.741)	NULL
HABP2	3026	genome.wustl.edu	37	10	115345664	115345664	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004132.3	+1	reviewed	p.G495	0.995	88	0%	91	13.2%	10	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
NRAP	4892	genome.wustl.edu	37	10	115364447	115364447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198060.2	-1	validated	p.T1383I	0.934	60	0%	47	19.1%	2	0%	benign(0.313)	tolerated(0.08)	neutral(0.397)	HMMPfam_Nebulin,HMMSmart_SM00227
C10orf118	55088	genome.wustl.edu	37	10	115885669	115885669	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018017.2	-1	validated	p.T863	0.429	89	0%	142	35.9%	6	0%	-	-	-	NULL
C10orf118	55088	genome.wustl.edu	37	10	115889679	115889679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018017.2	-1	validated	p.S718N	1.000	187	0%	251	29.5%	12	0%	probably_damaging(0.954)	tolerated(0.22)	neutral(0.440)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115958936	115958936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198795.1	+1	reviewed	p.P130L	0.117	294	0%	348	36.5%	0	-	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115963151	115963151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198795.1	+1	reviewed	p.T269M	0.997	219	0.5%	264	27.7%	1	0%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_TUDOR
ATRNL1	26033	genome.wustl.edu	37	10	117607482	117607482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207303.2	+1	validated	p.A1333V	1.000	85	0%	81	27.2%	1	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
RAB11FIP2	22841	genome.wustl.edu	37	10	119798561	119798561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014904.2	-1	validated	p.R396H	0.848	102	0%	238	32.8%	7	0%	benign(0.006)	tolerated(0.13)	neutral(0.253)	NULL
EIF3A	8661	genome.wustl.edu	37	10	120795555	120795555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003750.2	-1	validated	p.R1382H	1.000	58	0%	60	23.3%	310	0%	unknown(0)	deleterious(0)	-	NULL
TIAL1	7073	genome.wustl.edu	37	10	121341443	121341443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033925.1	-1	reviewed	p.G138D	1.000	109	0%	183	29%	72	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SEC23IP	11196	genome.wustl.edu	37	10	121663641	121663641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007190.2	+1	reviewed	p.R318H	1.000	95	0%	103	21.4%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEC23IP	11196	genome.wustl.edu	37	10	121663713	121663713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007190.2	+1	reviewed	p.R342H	1.000	107	0%	86	24.4%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGFR2	2263	genome.wustl.edu	37	10	123256231	123256231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022970.3	-1	reviewed	p.L561F	0.996	185	0%	227	29.1%	30	0%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ATE1	11101	genome.wustl.edu	37	10	123600644	123600644	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000423243	-1	known	p.R367*	0.960	125	0%	151	38.4%	8	0%	-	-	-	HMMPfam_ATE_C
TACC2	10579	genome.wustl.edu	37	10	123843282	123843282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206862.2	+1	reviewed	p.A423T	0.000	57	0%	65	26.2%	9	0%	benign(0.002)	tolerated(0.76)	neutral(0.001)	NULL
TACC2	10579	genome.wustl.edu	37	10	123903210	123903210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206862.2	+1	reviewed	p.K1941N	0.981	29	0%	44	43.2%	4	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TACC2	10579	genome.wustl.edu	37	10	123976221	123976221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206862.2	+1	reviewed	p.A2475V	0.999	71	0%	118	15.3%	24	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TACC2	10579	genome.wustl.edu	37	10	123985909	123985909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206862.2	+1	reviewed	p.A2546V	1.000	44	0%	39	12.8%	44	0%	benign(0.334)	deleterious(0.02)	deleterious(0.488)	NULL
TACC2	10579	genome.wustl.edu	37	10	123987352	123987352	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206862.2	+1	reviewed	p.G2575	1.000	128	0%	141	30.5%	19	0%	-	-	-	NULL
DMBT1	1755	genome.wustl.edu	37	10	124390744	124390744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007329.2	+1	reviewed	p.G1969D	0.785	228	0%	285	26.3%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124395632	124395632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007329.2	+1	reviewed	p.S2096F	0.993	63	0%	59	32.2%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
IKZF5	64376	genome.wustl.edu	37	10	124753489	124753489	+	Missense_Mutation	SNP	G	G	A	rs151015331	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022466.5	-1	provisional	p.P356L	0.999	86	0%	101	43.6%	11	0%	possibly_damaging(0.679)	tolerated(0.15)	deleterious(0.483)	NULL
FAM53B	9679	genome.wustl.edu	37	10	126384776	126384776	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014661.3	-1	validated	p.T28	1.000	131	0%	168	23.2%	23	0%	-	-	-	NULL
C10orf137	26098	genome.wustl.edu	37	10	127426877	127426877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015608.2	+1	validated	p.V581A	1.000	268	0%	321	11.5%	15	0%	benign(0.029)	tolerated(0.08)	neutral(0.301)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127434426	127434426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015608.2	+1	validated	p.A880V	1.000	146	0%	176	35.8%	21	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128904531	128904531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000398025	+1	known	p.D807N	0.996	43	0%	39	41%	23	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MKI67	4288	genome.wustl.edu	37	10	129901907	129901907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002417.4	-1	reviewed	p.V2733I	0.000	113	0%	161	40.4%	24	0%	possibly_damaging(0.888)	tolerated(0.48)	neutral(0.358)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129906964	129906964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002417.4	-1	reviewed	p.T1047M	0.001	492	0%	778	11.7%	11	0%	probably_damaging(0.99)	tolerated(0.6)	neutral(0.446)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129910295	129910295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002417.4	-1	reviewed	p.A662T	1.000	122	0%	168	32.7%	16	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MKI67	4288	genome.wustl.edu	37	10	129913670	129913670	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002417.4	-1	reviewed	p.G334	0.000	107	0%	105	39%	1	0%	-	-	-	NULL
TALDO1	6888	genome.wustl.edu	37	11	759053	759053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006755.1	+1	reviewed	p.A109T	0.953	31	0%	78	39.7%	672	0.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transaldolase,superfamily_SSF51569
MUC5B	727897	genome.wustl.edu	37	11	1269707	1269707	+	Missense_Mutation	SNP	C	C	T	rs187569173	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002458.1	+1	validated	p.P3869L	0.001	37	0%	68	32.4%	1	0%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271548	1271548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002458.1	+1	validated	p.H4483Y	0.000	43	0%	50	48%	1	0%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272500	1272500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002458.1	+1	validated	p.A4800V	0.002	33	0%	62	37.1%	0	-	unknown(0)	-	-	NULL
KRTAP5-1	387264	genome.wustl.edu	37	11	1606000	1606000	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005922.1	-1	validated	p.C160	0.995	96	0%	136	22.8%	1	0%	-	-	-	PatternScan_2FE2S_FER_1
LOC338651	338651	genome.wustl.edu	37	11	1618757	1618757	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_021489.1	+1	validated	NULL	0.000	8	0.000	31	0.355	7	0%	-	-	-	-
CARS	833	genome.wustl.edu	37	11	3062180	3062180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014437.1	-1	reviewed	p.T134M	1.000	80	0%	116	37.1%	31	0%	benign(0.039)	tolerated(0.09)	neutral(0.298)	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
STIM1	6786	genome.wustl.edu	37	11	4104160	4104160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003156.3	+1	reviewed	p.V396M	1.000	167	0%	189	47.6%	38	0%	possibly_damaging(0.892)	tolerated(0.08)	deleterious(0.651)	NULL
STIM1	6786	genome.wustl.edu	37	11	4107731	4107731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003156.3	+1	reviewed	p.R500Q	1.000	38	0%	42	23.8%	23	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TRIM68	55128	genome.wustl.edu	37	11	4621715	4621715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018073.5	-1	reviewed	p.P417S	0.729	117	0%	95	31.6%	29	0%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_SPRY,HMMSmart_SPRY
OR51E2	81285	genome.wustl.edu	37	11	4703294	4703294	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030774.3	-1	validated	p.S216	0.998	99	0%	145	29%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51F1	256892	genome.wustl.edu	37	11	4790326	4790326	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004752.1	-1	provisional	p.V274	0.061	145	0%	133	28.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52R1	119695	genome.wustl.edu	37	11	4825550	4825550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005177.3	-1	validated	p.P100S	1.000	116	0%	180	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
OR51T1	401665	genome.wustl.edu	37	11	4903505	4903505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004759.1	+1	provisional	p.V153M	0.954	434	0%	456	14.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR52J3	119679	genome.wustl.edu	37	11	5068313	5068313	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001916.2	+1	validated	p.I186	0.003	299	0%	336	14%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B6	390058	genome.wustl.edu	37	11	5372859	5372859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004750.1	+1	provisional	p.G41D	0.197	176	0%	206	32.5%	0	-	possibly_damaging(0.864)	tolerated(0.07)	deleterious(0.653)	HMMPfam_7tm_1,superfamily_SSF81321
OR52B6	340980	genome.wustl.edu	37	11	5603097	5603097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005162.2	+1	validated	p.A331T	0.000	230	0%	277	34.3%	0	-	benign(0.016)	tolerated(0.22)	neutral(0.043)	NULL
OR52E4	390081	genome.wustl.edu	37	11	5906021	5906021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005165.1	+1	provisional	p.R167C	0.008	255	0%	268	11.2%	0	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_7tm_1,superfamily_SSF81321
OR56A3	390083	genome.wustl.edu	37	11	5969127	5969127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001003443.2	+1	provisional	p.A184V	0.515	159	0%	394	29.4%	0	-	possibly_damaging(0.626)	deleterious(0.02)	deleterious(0.601)	HMMPfam_7tm_1,superfamily_SSF81321
OR52L2P	79274	genome.wustl.edu	37	11	6079086	6079086	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000316540	-1	known	p.R140	0.998	65	0%	130	32.3%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000180913	0	genome.wustl.edu	37	11	6150255	6150255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000316517	+1	known	p.A139D	0.000	44	0%	65	21.5%	0	-	benign(0.245)	tolerated(0.16)	neutral(0.084)	HMMPfam_7tm_1,superfamily_SSF81321
FAM160A2	84067	genome.wustl.edu	37	11	6233088	6233088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032127.3	-1	validated	p.R870Q	1.000	242	0%	233	30%	42	0%	probably_damaging(0.953)	tolerated(0.13)	deleterious(0.649)	NULL
FAM160A2	84067	genome.wustl.edu	37	11	6239332	6239332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032127.3	-1	validated	p.R509Q	0.998	28	0%	44	40.9%	34	0%	probably_damaging(0.986)	tolerated(0.08)	deleterious(0.734)	NULL
FAM160A2	84067	genome.wustl.edu	37	11	6244386	6244386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032127.3	-1	validated	p.R287Q	1.000	309	0%	523	18.7%	12	0%	possibly_damaging(0.806)	tolerated(0.36)	neutral(0.324)	HMMPfam_RAI16-like
TRIM3	10612	genome.wustl.edu	37	11	6470616	6470616	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006458.2	-1	reviewed	p.Q668*	1.000	41	0%	61	18%	12	0%	-	-	-	superfamily_NHL repeat
DNHD1	144132	genome.wustl.edu	37	11	6530298	6530298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173589.3	+1	validated	p.R370H	0.995	436	0%	435	10.3%	3	0%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6649980	6649980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003737.2	-1	reviewed	p.A1748V	0.231	18	0%	56	21.4%	5	0%	benign(0.029)	deleterious(0.02)	neutral(0.385)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6654043	6654043	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003737.2	-1	reviewed	p.T900	0.012	26	3.8%	54	13%	2	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6662405	6662405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003737.2	-1	reviewed	p.R147Q	0.486	6	0.000	25	0.360	1	0%	probably_damaging(0.971)	tolerated(0.61)	neutral(0.417)	superfamily_Cadherin
OR6A2	8590	genome.wustl.edu	37	11	6816930	6816930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003696.2	-1	provisional	p.R4W	0.006	171	0%	215	14%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_SSF81321
ZNF215	7762	genome.wustl.edu	37	11	6953717	6953717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013250.2	+1	validated	p.L72F	0.963	138	0%	168	32.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SCAN,HMMSmart_SM00431
TUB	7275	genome.wustl.edu	37	11	8115674	8115674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003320.4	+1	reviewed	p.A167V	0.986	17	0%	14	35.7%	4	0%	benign(0.079)	tolerated(0.25)	neutral(0.042)	NULL
ST5	6764	genome.wustl.edu	37	11	8752477	8752477	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005418.3	-1	reviewed	p.G120	0.766	21	0%	26	50%	10	0%	-	-	-	NULL
USP47	55031	genome.wustl.edu	37	11	11944361	11944361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017944.3	+1	validated	p.D369N	1.000	133	0%	168	29.8%	18	0%	probably_damaging(0.969)	tolerated(0.12)	deleterious(0.672)	HMMPfam_UCH,superfamily_Cysteine proteinases
ARNTL	406	genome.wustl.edu	37	11	13393796	13393796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001030272.1	+1	reviewed	p.E302K	1.000	160	0%	152	32.2%	3	0%	possibly_damaging(0.466)	tolerated(0.18)	neutral(0.209)	NULL
COPB1	1315	genome.wustl.edu	37	11	14520446	14520446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144061.1	-1	reviewed	p.T10M	1.000	89	0%	115	17.4%	41	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
PDE3B	5140	genome.wustl.edu	37	11	14891033	14891033	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000922.3	+1	validated	p.R1056*	1.000	310	0.3%	402	22.1%	3	0%	-	-	-	superfamily_HD-domain/PDEase-like
INSC	387755	genome.wustl.edu	37	11	15197605	15197605	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031853.3	+1	provisional	p.S172	1.000	18	0%	18	22.2%	0	-	-	-	-	superfamily_ARM repeat
INSC	387755	genome.wustl.edu	37	11	15212356	15212356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031853.3	+1	provisional	p.A277D	1.000	173	0%	169	16%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	superfamily_ARM repeat
INSC	387755	genome.wustl.edu	37	11	15262048	15262048	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031853.3	+1	provisional	p.D530	0.794	56	0%	73	27.4%	0	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
SOX6	55553	genome.wustl.edu	37	11	16007847	16007847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033326.3	-1	reviewed	p.R676C	1.000	199	0%	207	25.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLEKHA7	144100	genome.wustl.edu	37	11	16863105	16863105	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175058.4	-1	validated	p.S287	0.016	147	0%	138	31.9%	9	0%	-	-	-	superfamily_PH domain-like
PIK3C2A	5286	genome.wustl.edu	37	11	17118749	17118749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002645.2	-1	validated	p.A1394D	1.000	114	0%	131	32.8%	19	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
KCNC1	3746	genome.wustl.edu	37	11	17793307	17793307	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001112741.1	+1	reviewed	p.T222	0.060	99	0%	131	34.4%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
MRGPRX4	117196	genome.wustl.edu	37	11	18195222	18195222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_054032.3	+1	validated	p.A140V	0.000	195	0%	152	32.9%	0	-	benign(0.03)	tolerated(0.1)	neutral(0.288)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GTF2H1	2965	genome.wustl.edu	37	11	18354667	18354667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142307.1	+1	validated	p.R16C	1.000	213	0%	252	23.4%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFIIH_BTF_p62_N,superfamily_PH domain-like
SPTY2D1	144108	genome.wustl.edu	37	11	18636836	18636836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194285.2	-1	validated	p.A329T	0.127	196	0.5%	195	30.8%	18	0%	possibly_damaging(0.67)	tolerated(0.09)	deleterious(0.534)	NULL
IGSF22	283284	genome.wustl.edu	37	11	18736127	18736127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173588.3	-1	validated	p.A526T	0.591	51	0%	70	28.6%	0	-	probably_damaging(0.991)	tolerated(0.39)	neutral(0.460)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
IGSF22	283284	genome.wustl.edu	37	11	18737161	18737161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173588.3	-1	validated	p.R450H	0.000	100	0%	190	18.9%	0	-	benign(0.006)	tolerated(0.28)	neutral(0.032)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
E2F8	79733	genome.wustl.edu	37	11	19246866	19246866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024680.2	-1	validated	p.A775T	0.000	211	0%	252	42.5%	10	0%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
NAV2	89797	genome.wustl.edu	37	11	19914063	19914063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182964.5	+1	validated	p.R285H	1.000	68	0%	62	24.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAV2	89797	genome.wustl.edu	37	11	20104605	20104605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182964.5	+1	validated	p.A1796V	1.000	98	0%	82	20.7%	28	0%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	NULL
NAV2	89797	genome.wustl.edu	37	11	20127101	20127101	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182964.5	+1	validated	p.T2226	0.998	78	0%	53	24.5%	12	0%	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRMT3	10196	genome.wustl.edu	37	11	20486022	20486022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005788.3	+1	validated	p.T426M	0.507	76	0%	96	31.2%	26	0%	possibly_damaging(0.793)	deleterious(0.01)	deleterious(0.704)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LUZP2	338645	genome.wustl.edu	37	11	25004826	25004826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009909.2	+1	validated	p.A251V	0.000	353	0.3%	321	27.1%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
LUZP2	338645	genome.wustl.edu	37	11	25100112	25100112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009909.2	+1	validated	p.P317S	0.161	254	0%	264	30.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANO3	63982	genome.wustl.edu	37	11	26463574	26463574	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031418.2	+1	validated	p.Q52	0.190	500	0%	419	27.9%	0	-	-	-	-	NULL
METTL15	196074	genome.wustl.edu	37	11	28318428	28318428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113528.1	+1	validated	p.R243H	1.000	232	0%	287	39%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Putative methyltransferase TM0872 insert domain
MPPED2	744	genome.wustl.edu	37	11	30601916	30601916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001584.2	-1	reviewed	p.A2V	1.000	82	0%	153	28.8%	21	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ELP4	26610	genome.wustl.edu	37	11	31616438	31616438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019040.3	+1	reviewed	p.P168L	1.000	136	0%	175	31.4%	26	0%	possibly_damaging(0.594)	deleterious(0)	deleterious(0.649)	HMMPfam_PAXNEB
PAX6	5080	genome.wustl.edu	37	11	31822341	31822341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001604.4	-1	reviewed	p.G155S	1.000	60	0%	48	25%	0	-	benign(0.002)	tolerated(1)	-	NULL
TCP11L1	55346	genome.wustl.edu	37	11	33083146	33083146	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145541.1	+1	validated	p.H282	0.081	120	0%	130	24.6%	13	0%	-	-	-	HMMPfam_Tcp11
TCP11L1	55346	genome.wustl.edu	37	11	33083147	33083147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145541.1	+1	validated	p.A283T	0.388	122	0%	127	11%	12	0%	possibly_damaging(0.477)	tolerated(0.17)	neutral(0.216)	HMMPfam_Tcp11
HIPK3	10114	genome.wustl.edu	37	11	33363159	33363159	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005734.3	+1	validated	p.Q608	1.000	287	0%	291	31.3%	16	0%	-	-	-	NULL
C11orf41	25758	genome.wustl.edu	37	11	33564430	33564430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012194.1	+1	validated	p.A144T	0.000	244	0%	266	34.6%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33566357	33566357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012194.1	+1	validated	p.V649I	0.013	54	0%	75	26.7%	0	-	benign(0.022)	tolerated(0.28)	neutral(0.033)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33589690	33589690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012194.1	+1	validated	p.R1092C	1.000	33	0%	25	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CD59	966	genome.wustl.edu	37	11	33738963	33738963	+	Missense_Mutation	SNP	G	G	A	rs77450648		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000611.5	-1	reviewed	p.A41V	0.000	40	0%	40	25%	198	0%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_UPAR_LY6,HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
CAPRIN1	4076	genome.wustl.edu	37	11	34118196	34118196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005898.4	+1	validated	p.R626W	0.998	131	0%	138	11.6%	370	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDHX	8050	genome.wustl.edu	37	11	34988347	34988347	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003477.2	+1	reviewed	p.Q268*	0.874	305	0.3%	298	33.2%	45	0%	-	-	-	NULL
SLC1A2	6506	genome.wustl.edu	37	11	35323160	35323160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004171.3	-1	reviewed	p.A255T	1.000	256	0%	365	27.9%	1	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_SDF
COMMD9	29099	genome.wustl.edu	37	11	36296273	36296273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014186.3	-1	validated	p.V169A	1.000	111	0%	90	30%	96	0%	benign(0.239)	deleterious(0)	deleterious(0.469)	HMMPfam_HCaRG
TRAF6	7189	genome.wustl.edu	37	11	36511471	36511471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004620.2	-1	reviewed	p.R496C	1.000	459	0%	608	13.2%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MATH,superfamily_Traf_like
RAG2	5897	genome.wustl.edu	37	11	36615244	36615244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000536.3	-1	reviewed	p.R159C	0.994	231	0%	249	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RAG2
LRRC4C	57689	genome.wustl.edu	37	11	40137400	40137400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020929.1	-1	validated	p.S148Y	1.000	141	0%	158	29.1%	8	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	HMMSmart_SM00369,superfamily_L domain-like
API5	8539	genome.wustl.edu	37	11	43342377	43342377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142930.1	+1	validated	p.R80C	1.000	236	0.8%	235	27.2%	45	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_API5,superfamily_ARM-type_fold
TTC17	55761	genome.wustl.edu	37	11	43418973	43418973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018259.5	+1	validated	p.V284M	0.999	352	0%	370	12.4%	16	0%	possibly_damaging(0.867)	tolerated(0.1)	deleterious(0.623)	superfamily_SSF48452
HSD17B12	51144	genome.wustl.edu	37	11	43861602	43861602	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016142.2	+1	validated	p.G224	1.000	165	0%	231	29.4%	76	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
SLC35C1	55343	genome.wustl.edu	37	11	45832496	45832496	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018389.4	+1	reviewed	p.N235	1.000	23	0%	30	40%	57	0%	-	-	-	HMMPfam_TPT
CRY2	1408	genome.wustl.edu	37	11	45891359	45891359	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021117.3	+1	validated	p.S416	0.992	23	0%	31	35.5%	12	0%	-	-	-	HMMPfam_FAD_binding_7,superfamily_Photolyase_FAD-bd/Cryptochr_C
PEX16	9409	genome.wustl.edu	37	11	45935903	45935903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_057174.2	-1	reviewed	p.A220T	1.000	7	0.000	9	0.444	50	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pex16
CREB3L1	90993	genome.wustl.edu	37	11	46342294	46342294	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052854.2	+1	validated	p.*520Q	1.000	7	0.000	34	0.235	12	0%	-	-	-	NULL
ATG13	9776	genome.wustl.edu	37	11	46693997	46693997	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_024587.1	+1	validated	NULL	0.000	38	2.6%	40	12.5%	54	0%	-	-	-	-
ZNF408	79797	genome.wustl.edu	37	11	46724717	46724728	+	In_Frame_Del	DEL	AGTGGTGACAGA	AGTGGTGACAGA	-	rs148055528	byCluster;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	AGTGGTGACAGA	AGTGGTGACAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024741.2	+1	validated	p.VTEV194in_frame_del	0.000:0.000:0.001:0.034:0.058:0.056:0.058:0.007:0.005:0.001:0.150:0.091	-	-	-	-	-	-	-	-	-	NULL
CKAP5	9793	genome.wustl.edu	37	11	46780945	46780945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008938.1	-1	validated	p.R1481H	1.000	135	0%	120	42.5%	139	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
NR1H3	10062	genome.wustl.edu	37	11	47282987	47282987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005693.2	+1	validated	p.R232Q	0.308	81	0%	96	40.6%	29	0%	benign(0.002)	tolerated(0.74)	neutral(0.002)	superfamily_Nuclear receptor ligand-binding domain
MADD	8567	genome.wustl.edu	37	11	47306108	47306108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003682.3	+1	reviewed	p.A717T	1.000	39	0%	39	33.3%	21	0%	benign(0.217)	tolerated(0.31)	neutral(0.049)	NULL
KBTBD4	55709	genome.wustl.edu	37	11	47594837	47594837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018095.4	-1	validated	p.Q417R	1.000	56	0%	141	26.2%	58	0%	possibly_damaging(0.558)	deleterious(0)	deleterious(0.635)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
MTCH2	23788	genome.wustl.edu	37	11	47652137	47652137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014342.3	-1	validated	p.Y170C	1.000	72	0%	96	38.5%	312	0%	benign(0.07)	deleterious(0)	neutral(0.450)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
MTCH2	23788	genome.wustl.edu	37	11	47660328	47660328	+	Missense_Mutation	SNP	G	G	A	rs34072236	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014342.3	-1	validated	p.R68C	0.986	38	0%	63	33.3%	243	0%	benign(0.003)	tolerated(0.17)	neutral(0.059)	superfamily_Mitochondrial carrier
PTPRJ	5795	genome.wustl.edu	37	11	48161228	48161228	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002843.3	+1	reviewed	p.T781	0.000	111	0.9%	84	32.1%	7	0%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
OR4S1	256148	genome.wustl.edu	37	11	48328291	48328291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004725.1	+1	provisional	p.D173Y	0.004	165	0%	219	12.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C13	283092	genome.wustl.edu	37	11	49974567	49974567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001955.2	+1	validated	p.A198V	0.314	449	0%	424	35.6%	0	-	benign(0.035)	tolerated(1)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C12	283093	genome.wustl.edu	37	11	50003175	50003175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005270.2	-1	validated	p.R288I	0.837	271	0%	208	26.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
ENSG00000236919	0	genome.wustl.edu	37	11	50205874	50205874	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000435540	-1	known	p.P151	0.978	15	0%	11	36.4%	0	-	-	-	-	NULL
OR4A5	81318	genome.wustl.edu	37	11	51412371	51412371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005272.3	-1	validated	p.E9*	0.408	116	0%	135	15.6%	0	-	-	-	-	PatternScan_LECTIN_LEGUME_ALPHA,superfamily_Family A G protein-coupled receptor-like
OR4A16	81327	genome.wustl.edu	37	11	55111177	55111177	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005274.1	+1	provisional	p.C167	0.367	334	0%	299	12%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4C11	219429	genome.wustl.edu	37	11	55371549	55371549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004700.1	-1	provisional	p.A101T	0.027	191	0%	216	37%	0	-	benign(0.017)	tolerated(0.33)	neutral(0.025)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C11	219429	genome.wustl.edu	37	11	55371786	55371786	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004700.1	-1	provisional	p.Q22*	0.087	207	0%	200	29.5%	0	-	-	-	-	superfamily_SSF81321
OR4P4	81300	genome.wustl.edu	37	11	55405980	55405980	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004124.1	+1	provisional	p.C49	0.000	409	0%	524	31.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5D13	390142	genome.wustl.edu	37	11	55541776	55541776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001967.1	+1	provisional	p.N288S	0.998	157	0%	193	17.6%	0	-	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D18	219438	genome.wustl.edu	37	11	55587866	55587866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001952.1	+1	provisional	p.G254D	0.011	191	0%	185	31.4%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_7tm_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703010	55703010	+	Silent	SNP	C	C	T	rs9665863	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006637.1	-1	reviewed	p.P289	0.000	100	0%	118	34.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR7E5P	219445	genome.wustl.edu	37	11	55747342	55747342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000399170	-1	known	p.G39S	0.000	63	0%	75	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55761719	55761719	+	Missense_Mutation	SNP	C	C	T	rs190524347	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003697.1	-1	provisional	p.R128H	0.026	173	0%	188	45.7%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_SSF81321
OR5F1	338674	genome.wustl.edu	37	11	55761769	55761769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003697.1	-1	provisional	p.E111D	0.002	239	0.4%	245	27.8%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_7tm_1,superfamily_SSF81321
OR5J2	282775	genome.wustl.edu	37	11	55944448	55944448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005492.1	+1	provisional	p.A119T	1.000	156	0%	194	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043385	56043385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004745.1	+1	provisional	p.P91S	0.879	352	0%	494	16%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8U1	219417	genome.wustl.edu	37	11	56143469	56143469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005204.1	+1	provisional	p.V124M	0.997	308	0%	457	30.4%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR5M3	219482	genome.wustl.edu	37	11	56237411	56237411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004742.1	-1	provisional	p.A188D	0.001	227	0.4%	334	37.1%	0	-	benign(0.102)	deleterious(0.02)	neutral(0.391)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M8	219484	genome.wustl.edu	37	11	56258763	56258763	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005282.1	-1	provisional	p.T28	0.000	220	0%	321	26.2%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR9G4	283189	genome.wustl.edu	37	11	56510971	56510971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005284.1	-1	provisional	p.R106H	0.006	256	0%	354	31.9%	0	-	benign(0.034)	tolerated(0.55)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56511051	56511051	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005284.1	-1	provisional	p.G79	0.000	239	0%	311	17.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SSRP1	6749	genome.wustl.edu	37	11	57099261	57099261	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003146.2	-1	reviewed	p.H368	1.000	11	0%	33	33.3%	340	0%	-	-	-	HMMPfam_SSrecog
OR10Q1	219960	genome.wustl.edu	37	11	57995511	57995511	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004471.2	-1	validated	p.I279	0.108	195	0%	242	33.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5B17	219965	genome.wustl.edu	37	11	58126477	58126477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005489.1	-1	validated	p.Q22H	0.000	254	0%	267	37.8%	0	-	benign(0.257)	deleterious(0.01)	neutral(0.432)	superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58170524	58170524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005469.1	-1	validated	p.R120H	1.000	239	0%	340	31.8%	0	-	possibly_damaging(0.678)	deleterious(0.01)	deleterious(0.647)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR5B2	390190	genome.wustl.edu	37	11	58190731	58190731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005566.2	-1	validated	p.E2K	0.979	355	0%	454	30.4%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	superfamily_Family A G protein-coupled receptor-like
ZFP91	80829	genome.wustl.edu	37	11	58384219	58384219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053023.3	+1	reviewed	p.A378D	1.000	188	0%	164	25%	74	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP91	80829	genome.wustl.edu	37	11	58385068	58385068	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053023.3	+1	reviewed	p.I534	1.000	153	0%	151	25.2%	58	0%	-	-	-	NULL
FAM111B	374393	genome.wustl.edu	37	11	58892924	58892924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198947.3	+1	validated	p.E452K	0.000	298	0%	485	27.4%	46	0%	possibly_damaging(0.945)	tolerated(0.54)	neutral(0.397)	superfamily_Trypsin-like serine proteases
MPEG1	219972	genome.wustl.edu	37	11	58978765	58978765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039396.1	-1	validated	p.A525V	0.404	96	0%	102	28.4%	1	0%	benign(0.167)	deleterious(0.01)	neutral(0.421)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60167889	60167889	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032597.3	+1	validated	p.G94*	0.995	108	0%	96	28.1%	0	-	-	-	-	HMMPfam_CD20
MS4A8B	83661	genome.wustl.edu	37	11	60470944	60470944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031457.1	+1	reviewed	p.G105*	0.668	400	0%	334	26.9%	0	-	-	-	-	HMMPfam_CD20
ZP1	22917	genome.wustl.edu	37	11	60638458	60638458	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207341.2	+1	validated	p.Y285*	0.993	70	0%	84	13.1%	0	-	-	-	-	superfamily_P_trefoil,HMMPfam_Zona_pellucida,HMMSmart_ZP
CD5	921	genome.wustl.edu	37	11	60886942	60886942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014207.3	+1	validated	p.P234S	0.962	50	0%	50	24%	3	0%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_SRCR,superfamily_SRCR-like
DDB1	1642	genome.wustl.edu	37	11	61070094	61070094	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001923.3	-1	validated	p.T1024	0.031	159	0%	186	29.6%	319	0%	-	-	-	HMMPfam_CPSF_A
DAGLA	747	genome.wustl.edu	37	11	61493472	61493472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006133.1	+1	validated	p.R185H	1.000	46	0%	47	10.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
INCENP	3619	genome.wustl.edu	37	11	61919404	61919404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040694.1	+1	validated	p.A905T	0.000	49	0%	39	43.6%	28	0%	benign(0.006)	tolerated(1)	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62299642	62299642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001620.1	-1	validated	p.M749I	1.000	187	0.5%	290	41.7%	11	0%	benign(0.002)	tolerated(0.88)	-	NULL
INTS5	80789	genome.wustl.edu	37	11	62416261	62416261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030628.1	-1	provisional	p.V431M	0.743	46	0%	65	30.8%	25	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
INTS5	80789	genome.wustl.edu	37	11	62416569	62416569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030628.1	-1	provisional	p.R328H	1.000	79	0%	105	13.3%	14	0%	possibly_damaging(0.944)	tolerated(0.18)	neutral(0.445)	NULL
TMEM179B	374395	genome.wustl.edu	37	11	62557503	62557503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199337.2	+1	validated	p.R215H	0.002	42	0%	84	15.5%	151	0%	benign(0.028)	tolerated(0.19)	neutral(0.051)	NULL
SLC22A9	114571	genome.wustl.edu	37	11	63174129	63174129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080866.2	+1	validated	p.L412I	0.000	194	0%	186	31.7%	0	-	possibly_damaging(0.492)	tolerated(0.82)	neutral(0.165)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A9	114571	genome.wustl.edu	37	11	63175629	63175629	+	Missense_Mutation	SNP	C	C	T	rs138350283	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080866.2	+1	validated	p.A445V	0.000	123	0.8%	117	10.3%	0	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RTN3	10313	genome.wustl.edu	37	11	63487563	63487563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201428.1	+1	validated	p.A511D	0.108	102	0%	128	14.1%	8	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
NAA40	79829	genome.wustl.edu	37	11	63719959	63719959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024771.2	+1	validated	p.A111V	1.000	64	0%	92	22.8%	59	0%	benign(0.046)	tolerated(0.05)	neutral(0.348)	superfamily_Acyl-CoA N-acyltransferases (Nat)
FLRT1	23769	genome.wustl.edu	37	11	63884463	63884463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013280.4	+1	reviewed	p.D242N	1.000	22	0%	14	28.6%	0	-	probably_damaging(0.957)	tolerated(0.2)	neutral(0.450)	HMMSmart_SM00369,superfamily_L domain-like
STIP1	10963	genome.wustl.edu	37	11	63970943	63970943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006819.2	+1	validated	p.R470C	1.000	29	0%	29	17.2%	309	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_SSF48452
FERMT3	83706	genome.wustl.edu	37	11	63974965	63974965	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178443.2	+1	reviewed	p.G43	0.124	28	0%	35	20%	4	0%	-	-	-	NULL
NUDT22	84304	genome.wustl.edu	37	11	63997325	63997325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128612.1	+1	validated	p.V259M	0.001	14	0.000	7	0.571	39	0%	unknown(0)	tolerated(0.16)	-	NULL
PLCB3	5331	genome.wustl.edu	37	11	64029898	64029898	+	Silent	SNP	C	C	T	rs185360102	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000932.2	+1	reviewed	p.N686	0.993	18	0%	34	35.3%	49	0%	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
MEN1	4221	genome.wustl.edu	37	11	64575112	64575112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000244.3	-1	reviewed	p.R237H	1.000	29	0%	57	28.1%	56	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Menin
CDC42BPG	55561	genome.wustl.edu	37	11	64600151	64600151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017525.2	-1	validated	p.R977H	0.999	9	0.000	7	0.571	12	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ATG2A	23130	genome.wustl.edu	37	11	64662495	64662495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015104.2	-1	validated	p.A1923T	1.000	51	0%	44	34.1%	34	0%	probably_damaging(0.968)	tolerated(0.23)	neutral(0.451)	HMMPfam_ATG_C
C11orf85	283129	genome.wustl.edu	37	11	64707153	64707153	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037225.1	-1	predicted	p.P211	0.557	82	0%	101	26.7%	0	-	possibly_damaging(0.523)	deleterious(0)	deleterious(0.621)	NULL
CDCA5	113130	genome.wustl.edu	37	11	64846842	64846842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080668.3	-1	validated	p.K221E	0.961	68	0%	93	35.5%	51	0%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_Sororin
ZFPL1	7542	genome.wustl.edu	37	11	64852767	64852767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453524	+1	known	p.P95S	0.000	32	0%	33	33.3%	2	0%	unknown(0)	-	-	NULL
CAPN1	823	genome.wustl.edu	37	11	64973986	64973986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005186.2	+1	reviewed	p.A469V	0.041	33	0%	43	34.9%	235	0%	benign(0.026)	tolerated(0.06)	neutral(0.324)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
TIGD3	220359	genome.wustl.edu	37	11	65123972	65123972	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145719.2	+1	reviewed	p.L231	1.000	20	0%	29	20.7%	2	0%	-	-	-	NULL
SLC25A45	283130	genome.wustl.edu	37	11	65144085	65144085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000332723	-1	known	p.A195T	0.769	84	0%	162	34.6%	1	0%	-	-	-	NULL
LTBP3	4054	genome.wustl.edu	37	11	65319740	65319740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130144.2	-1	reviewed	p.R442C	1.000	15	0%	49	20.4%	104	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TB,superfamily_TB module/8-cys domain
KAT5	10524	genome.wustl.edu	37	11	65480974	65480974	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182710.1	+1	reviewed	p.T180	1.000	84	0%	71	39.4%	9	0%	-	-	-	NULL
SNX32	254122	genome.wustl.edu	37	11	65616954	65616954	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152760.2	+1	validated	p.S14	0.063	56	0%	102	35.3%	0	-	-	-	-	NULL
FIBP	9158	genome.wustl.edu	37	11	65655011	65655011	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000426652	-1	known	p.G157	0.000	37	0%	82	43.9%	1	0%	-	-	-	NULL
DRAP1	10589	genome.wustl.edu	37	11	65688826	65688826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006442.3	+1	reviewed	p.A180T	0.350	15	0%	17	29.4%	231	0%	benign(0)	tolerated(1)	-	NULL
SF3B2	10992	genome.wustl.edu	37	11	65827010	65827010	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006842.2	+1	reviewed	p.L449	1.000	75	0%	209	23.9%	385	0%	-	-	-	NULL
KLC2	64837	genome.wustl.edu	37	11	66031853	66031853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134775.1	+1	validated	p.A385V	1.000	21	0%	57	33.3%	72	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
KLC2	64837	genome.wustl.edu	37	11	66033585	66033585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001134775.1	+1	validated	p.R542C	1.000	32	0%	35	34.3%	46	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CNIH2	254263	genome.wustl.edu	37	11	66050763	66050763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182553.1	+1	provisional	p.A119V	1.000	14	0%	19	31.6%	7	0%	benign(0.058)	deleterious(0)	neutral(0.448)	HMMPfam_Cornichon
CD248	57124	genome.wustl.edu	37	11	66083563	66083563	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020404.2	-1	validated	p.D312	0.994	6	0.000	28	0.357	10	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PELI3	246330	genome.wustl.edu	37	11	66241325	66241325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145065.2	+1	validated	p.R257W	1.000	10	0%	11	36.4%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
BBS1	582	genome.wustl.edu	37	11	66283399	66283399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024649.4	+1	reviewed	p.R196W	1.000	127	0%	261	10.3%	39	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBM14	10432	genome.wustl.edu	37	11	66392287	66392287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006328.3	+1	validated	p.A314T	0.981	77	0%	105	37.1%	56	1.7%	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
RBM14	10432	genome.wustl.edu	37	11	66393136	66393136	+	Missense_Mutation	SNP	G	G	A	rs190230004		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006328.3	+1	validated	p.A597T	1.000	19	0%	15	46.7%	76	0%	unknown(0)	tolerated(0.07)	-	NULL
RBM14	10432	genome.wustl.edu	37	11	66394069	66394069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006328.3	+1	validated	p.R647H	1.000	20	0%	37	27%	72	0%	unknown(0)	tolerated(0.71)	-	NULL
RBM4B	83759	genome.wustl.edu	37	11	66436256	66436256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031492.2	-1	provisional	p.R307C	1.000	65	0%	76	32.9%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66461747	66461747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006946.2	-1	reviewed	p.A1456T	0.025	39	0%	51	29.4%	22	0%	benign(0.002)	tolerated(0.56)	neutral(0.006)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66475758	66475758	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006946.2	-1	reviewed	p.L402	1.000	8	0.000	10	0.600	10	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
RHOD	29984	genome.wustl.edu	37	11	66837972	66837972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014578.3	+1	reviewed	p.D136G	1.000	67	0%	77	32.5%	51	0%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
KDM2A	22992	genome.wustl.edu	37	11	67017605	67017605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012308.2	+1	reviewed	p.L702M	1.000	29	0%	62	27.4%	75	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
SSH3	54961	genome.wustl.edu	37	11	67075039	67075039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017857.3	+1	validated	p.H208Y	1.000	21	0%	24	20.8%	12	0%	benign(0.31)	deleterious(0.01)	deleterious(0.502)	NULL
RPS6KB2	6199	genome.wustl.edu	37	11	67202553	67202553	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003952.2	+1	reviewed	p.P454	0.104	4	0.000	9	0.444	35	2.8%	-	-	-	NULL
CABP4	57010	genome.wustl.edu	37	11	67223848	67223848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145200.3	+1	reviewed	p.R159Q	1.000	12	0%	14	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
PITPNM1	9600	genome.wustl.edu	37	11	67262333	67262333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004910.2	-1	validated	p.T909M	1.000	8	0.000	15	0.400	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NDUFV1	4723	genome.wustl.edu	37	11	67379697	67379697	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007103.3	+1	reviewed	p.T423	1.000	45	0%	71	35.2%	280	0%	-	-	-	NULL
ALDH3B2	222	genome.wustl.edu	37	11	67434105	67434105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000695.3	-1	reviewed	p.A31T	0.000	44	0%	52	17.3%	8	0%	benign(0.046)	deleterious(0.02)	neutral(0.386)	HMMPfam_Aldedh,superfamily_ALDH-like
C11orf24	53838	genome.wustl.edu	37	11	68029929	68029929	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022338.3	-1	validated	p.P178	0.000	19	0%	16	56.2%	58	0%	-	-	-	NULL
LRP5	4041	genome.wustl.edu	37	11	68115563	68115563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002335.2	+1	reviewed	p.A114T	1.000	45	0%	79	34.2%	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP5	4041	genome.wustl.edu	37	11	68193604	68193604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002335.2	+1	reviewed	p.A1196T	0.061	37	0%	45	40%	93	0%	benign(0.263)	tolerated(0.57)	neutral(0.034)	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
LRP5	4041	genome.wustl.edu	37	11	68204421	68204421	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002335.2	+1	reviewed	p.C1355	0.950	22	0%	19	47.4%	89	0%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
LRP5	4041	genome.wustl.edu	37	11	68216349	68216349	+	Silent	SNP	C	C	T	rs112415702	byCluster	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002335.2	+1	reviewed	p.S1553	0.005	17	5.9%	20	25%	78	0%	-	-	-	NULL
PPP6R3	55291	genome.wustl.edu	37	11	68367951	68367951	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018312.4	+1	validated	p.T647	0.005	150	0%	122	17.2%	60	0%	-	-	-	NULL
CPT1A	1374	genome.wustl.edu	37	11	68530203	68530203	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001876.3	-1	reviewed	p.Y589	0.982	41	0%	48	27.1%	19	0%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CPT1A	1374	genome.wustl.edu	37	11	68548126	68548126	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001876.3	-1	reviewed	p.I480	0.658	77	0%	110	12.7%	22	0%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CPT1A	1374	genome.wustl.edu	37	11	68552424	68552424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001876.3	-1	reviewed	p.R341H	0.996	27	0%	24	25%	16	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
TPCN2	219931	genome.wustl.edu	37	11	68822733	68822733	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139075.3	+1	reviewed	p.R114	0.001	49	0%	50	30%	10	0%	-	-	-	superfamily_SSF81324
TPCN2	219931	genome.wustl.edu	37	11	68852697	68852697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139075.3	+1	reviewed	p.A594V	1.000	30	0%	35	22.9%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
MYEOV	26579	genome.wustl.edu	37	11	69063085	69063085	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138768.2	+1	validated	p.S56	0.000	41	0%	69	34.8%	0	-	-	-	-	NULL
FGF3	2248	genome.wustl.edu	37	11	69625410	69625410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005247.2	-1	reviewed	p.T128M	1.000	17	0%	11	45.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
PPFIA1	8500	genome.wustl.edu	37	11	70224244	70224244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003626.2	+1	reviewed	p.R1165W	1.000	102	0%	124	36.3%	50	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTTN	2017	genome.wustl.edu	37	11	70265910	70265910	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000415461	+1	known	p.A191V	0.223	43	0%	46	30.4%	125	0%	-	-	-	HMMPfam_HS1_rep
DHCR7	1717	genome.wustl.edu	37	11	71155948	71155948	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001360.2	-1	reviewed	p.G17	0.000	165	0%	192	30.7%	92	0%	-	-	-	NULL
NUMA1	4926	genome.wustl.edu	37	11	71725980	71725980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006185.2	-1	validated	p.A857T	0.944	54	0%	44	18.2%	195	0%	benign(0.006)	tolerated(0.28)	neutral(0.032)	NULL
CLPB	81570	genome.wustl.edu	37	11	72006560	72006560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030813.3	-1	provisional	p.R518C	0.986	46	0%	39	25.6%	18	0%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMSmart_SM00382,HMMPfam_AAA_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
PDE2A	5138	genome.wustl.edu	37	11	72291989	72291989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002599.3	-1	validated	p.S692P	1.000	23	0%	38	42.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
ARAP1	116985	genome.wustl.edu	37	11	72408131	72408131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040118.2	-1	reviewed	p.E1021D	1.000	27	0%	28	25%	50	0%	benign(0.254)	tolerated(0.25)	neutral(0.063)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARAP1	116985	genome.wustl.edu	37	11	72410566	72410566	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040118.2	-1	reviewed	p.D778	0.665	15	0%	17	29.4%	43	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FCHSD2	9873	genome.wustl.edu	37	11	72552500	72552500	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014824.2	-1	validated	p.N685	0.829	17	0%	31	38.7%	12	0%	-	-	-	NULL
P2RY2	5029	genome.wustl.edu	37	11	72945623	72945623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002564.2	+1	reviewed	p.R140H	0.049	24	0%	33	15.2%	0	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF17	9828	genome.wustl.edu	37	11	73068164	73068164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014786.3	+1	validated	p.R1329H	1.000	5	0.000	14	0.357	7	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_PH domain-like
ARHGEF17	9828	genome.wustl.edu	37	11	73074839	73074839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014786.3	+1	validated	p.S1765N	1.000	5	0.000	22	0.227	12	0%	possibly_damaging(0.723)	deleterious(0.01)	deleterious(0.668)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
UCP2	7351	genome.wustl.edu	37	11	73688981	73688981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003355.2	-1	reviewed	p.R96H	1.000	65	0%	89	28.1%	339	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SPCS2	9789	genome.wustl.edu	37	11	74676946	74676946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014752.2	+1	validated	p.V113I	0.998	653	0%	647	27.8%	154	0%	possibly_damaging(0.582)	tolerated(0.12)	neutral(0.461)	HMMPfam_SPC25
NEU3	10825	genome.wustl.edu	37	11	74717050	74717050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006656.5	+1	reviewed	p.A300V	0.000	84	0%	78	32.1%	4	0%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_Sialidase
SERPINH1	871	genome.wustl.edu	37	11	75277928	75277928	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001235.2	+1	reviewed	p.A178	0.551	27	0%	17	29.4%	427	0%	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
C11orf30	56946	genome.wustl.edu	37	11	76248895	76248895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020193.3	+1	validated	p.A806T	1.000	155	0%	171	28.1%	9	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
AQP11	282679	genome.wustl.edu	37	11	77301467	77301467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173039.1	+1	provisional	p.T144A	0.372	36	0%	45	13.3%	3	0%	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_MIP
RSF1	51773	genome.wustl.edu	37	11	77378468	77378468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016578.3	-1	validated	p.R1274W	1.000	258	0%	273	30%	33	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RSF1	51773	genome.wustl.edu	37	11	77409695	77409695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016578.3	-1	validated	p.R851H	1.000	259	0%	301	33.9%	26	0%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
KCTD14	65987	genome.wustl.edu	37	11	77728159	77728159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023930.3	-1	validated	p.S83N	1.000	56	0%	60	31.7%	53	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
ALG8	79053	genome.wustl.edu	37	11	77815047	77815047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024079.4	-1	reviewed	p.S443L	0.997	22	0%	51	27.5%	54	0%	benign(0.001)	tolerated(0.65)	neutral(0.003)	HMMPfam_Alg6_Alg8
USP35	57558	genome.wustl.edu	37	11	77924787	77924787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020798.2	+1	provisional	p.E995D	1.000	114	0%	121	29.8%	8	0%	unknown(0)	tolerated(0.58)	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78443602	78443602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098816.2	-1	validated	p.G966D	1.000	45	0%	56	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRCP	5547	genome.wustl.edu	37	11	82561470	82561470	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199418.2	-1	reviewed	p.R184	0.005	318	0%	393	15.3%	109	0%	-	-	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
ANKRD42	338699	genome.wustl.edu	37	11	82921423	82921423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182603.2	+1	validated	p.H110Y	1.000	367	0%	449	29.2%	13	0%	probably_damaging(0.964)	tolerated(0.05)	deleterious(0.752)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CREBZF	58487	genome.wustl.edu	37	11	85375565	85375565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039618.2	-1	validated	p.H119Y	1.000	53	0%	49	22.4%	54	0%	benign(0.418)	tolerated(0.19)	neutral(0.185)	NULL
CCDC83	220047	genome.wustl.edu	37	11	85597335	85597335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173556.3	+1	provisional	p.E146K	0.638	54	0%	97	36.1%	0	-	benign(0.009)	tolerated(0.94)	neutral(0.001)	NULL
EED	8726	genome.wustl.edu	37	11	85961344	85961344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003797.2	+1	reviewed	p.A41T	1.000	216	0%	251	12%	28	0%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
ME3	10873	genome.wustl.edu	37	11	86198420	86198420	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014811.1	-1	reviewed	p.Y256	0.866	108	0.9%	82	26.8%	13	0%	-	-	-	HMMPfam_malic,superfamily_SSF53223
TMEM135	65084	genome.wustl.edu	37	11	86778808	86778808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022918.3	+1	validated	p.A72T	0.991	81	0%	123	35%	4	0%	benign(0)	tolerated(1)	-	NULL
CTSC	1075	genome.wustl.edu	37	11	88033768	88033768	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001814.4	-1	reviewed	p.L229	0.000	228	0%	262	16%	181	0%	-	-	-	superfamily_Cysteine proteinases
GRM5	2915	genome.wustl.edu	37	11	88583111	88583111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001143831.2	-1	reviewed	p.R292C	1.000	129	0%	157	13.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ENSG00000204455	0	genome.wustl.edu	37	11	89592688	89592688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000417534	+1	known	p.P270S	0.001	39	0%	48	22.9%	0	-	-	-	-	NULL
LOC653111	653111	genome.wustl.edu	37	11	89768759	89768759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_926073.2	+1	model	p.R127H	0.000	173	14.5%	167	30.5%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_zf-B_box,HMMSmart_SM00336
LOC653111	653111	genome.wustl.edu	37	11	89769077	89769077	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_926073.2	+1	model	p.Q145*	0.006	178	0%	175	14.9%	0	-	-	-	-	NULL
MIR1261	100302228	genome.wustl.edu	37	11	90602363	90602363	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408659	-1	known	NULL	0.001	90	0%	89	30.3%	0	-	-	-	-	-
FAT3	120114	genome.wustl.edu	37	11	92538476	92538476	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008781.2	+1	validated	p.S3018	0.217	40	0%	43	34.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
MTNR1B	4544	genome.wustl.edu	37	11	92714733	92714733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005959.3	+1	reviewed	p.A115V	1.000	172	0%	217	29.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
ANKRD49	54851	genome.wustl.edu	37	11	94231575	94231575	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017704.2	+1	validated	p.Y199	0.695	133	0%	152	38.2%	33	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PIWIL4	143689	genome.wustl.edu	37	11	94340607	94340607	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152431.2	+1	validated	p.V547	0.956	129	0%	170	30.6%	0	-	-	-	-	HMMPfam_Piwi,superfamily_Ribonuclease H-like
AMOTL1	154810	genome.wustl.edu	37	11	94532685	94532685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130847.2	+1	reviewed	p.G110D	1.000	89	0%	113	38.1%	25	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AMOTL1	154810	genome.wustl.edu	37	11	94602456	94602456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130847.2	+1	reviewed	p.T861M	0.000	37	0%	22	36.4%	30	0%	possibly_damaging(0.607)	tolerated(0.08)	deleterious(0.510)	NULL
SESN3	143686	genome.wustl.edu	37	11	94906474	94906474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144665.2	-1	provisional	p.R475Q	0.998	93	0%	100	22%	26	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_PA26
CNTN5	53942	genome.wustl.edu	37	11	99715881	99715881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014361.2	+1	reviewed	p.G155D	1.000	180	0%	178	12.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KIAA1377	57562	genome.wustl.edu	37	11	101793446	101793446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020802.2	+1	validated	p.R68Q	1.000	74	0%	83	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MMP10	4319	genome.wustl.edu	37	11	102647027	102647027	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002425.2	-1	reviewed	p.L306	0.008	159	0%	164	34.8%	0	-	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
DCUN1D5	84259	genome.wustl.edu	37	11	102937031	102937031	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032299.3	-1	validated	p.W174*	1.000	117	0%	166	21.1%	113	0%	-	-	-	HMMPfam_DUF298
DYNC2H1	79659	genome.wustl.edu	37	11	103060533	103060533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080463.1	+1	reviewed	p.Q2475H	1.000	240	0%	302	28.8%	3	0%	benign(0.008)	tolerated(0.05)	neutral(0.345)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC643733	643733	genome.wustl.edu	37	11	104776228	104776228	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_078449.1	-1	model	NULL	0.001	215	0%	308	30.2%	4	0%	-	-	-	-
RAB39A	54734	genome.wustl.edu	37	11	107832695	107832695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017516.1	+1	provisional	p.R84H	1.000	75	0%	95	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CUL5	8065	genome.wustl.edu	37	11	107925636	107925636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003478.3	+1	validated	p.A245V	1.000	54	0%	96	27.1%	18	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cullin,superfamily_Cullin repeat
NPAT	4863	genome.wustl.edu	37	11	108058831	108058831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002519.2	-1	validated	p.R211H	1.000	90	1.1%	120	27.5%	14	7.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NPAT	4863	genome.wustl.edu	37	11	108068062	108068062	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002519.2	-1	validated	p.C41	1.000	150	0%	163	24.5%	5	0%	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108117739	108117739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000051.3	+1	reviewed	p.D317G	0.998	85	0%	97	36.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108216596	108216596	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000051.3	+1	reviewed	p.R2849*	1.000	404	0%	525	26.5%	13	0%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108235935	108235935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000051.3	+1	reviewed	p.R2993*	1.000	385	0%	381	12.3%	19	0%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
EXPH5	23086	genome.wustl.edu	37	11	108384747	108384747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015065.2	-1	validated	p.S496N	0.027	183	0%	287	39.4%	5	0%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
C11orf87	399947	genome.wustl.edu	37	11	109294542	109294542	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207645.3	+1	validated	p.T61	1.000	98	0%	77	42.9%	0	-	-	-	-	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110451831	110451831	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020809.2	-1	validated	p.S613	1.000	96	0%	132	39.4%	1	0%	-	-	-	NULL
LAYN	143903	genome.wustl.edu	37	11	111414782	111414782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178834.3	+1	provisional	p.E74K	0.994	88	0%	77	28.6%	2	0%	possibly_damaging(0.9)	tolerated(0.14)	deleterious(0.606)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
SIK2	23235	genome.wustl.edu	37	11	111591346	111591346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015191.1	+1	validated	p.R547H	0.208	210	0%	216	31.9%	22	0%	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	superfamily_Protein kinase-like (PK-like)
PPP2R1B	5519	genome.wustl.edu	37	11	111625731	111625731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181699.2	-1	reviewed	p.R311W	1.000	66	0%	103	38.8%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM-type_fold
PPP2R1B	5519	genome.wustl.edu	37	11	111630561	111630561	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181699.2	-1	reviewed	p.V218	1.000	61	0%	106	27.4%	19	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM-type_fold
DIXDC1	85458	genome.wustl.edu	37	11	111864457	111864457	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037954.2	+1	validated	p.Q477*	1.000	30	0%	63	15.9%	1	0%	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
TTC12	54970	genome.wustl.edu	37	11	113235612	113235612	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017868.3	+1	validated	p.N624	0.991	151	0%	132	35.6%	24	0%	-	-	-	superfamily_ARM-type_fold
DRD2	1813	genome.wustl.edu	37	11	113295261	113295261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000795.3	-1	reviewed	p.A38V	1.000	57	0%	44	22.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
ZW10	9183	genome.wustl.edu	37	11	113619060	113619060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004724.2	-1	reviewed	p.E336D	0.989	218	0%	161	26.1%	22	0%	possibly_damaging(0.912)	tolerated(0.21)	neutral(0.407)	HMMPfam_Zw10
USP28	57646	genome.wustl.edu	37	11	113704982	113704982	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020886.2	-1	validated	p.R204*	1.000	207	0.5%	267	35.6%	13	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
ZBTB16	7704	genome.wustl.edu	37	11	114027082	114027082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001018011.1	+1	reviewed	p.T431M	1.000	151	0%	126	24.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
ZBTB16	7704	genome.wustl.edu	37	11	114118080	114118080	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001018011.1	+1	reviewed	p.V595	1.000	56	0%	47	23.4%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM55A	120400	genome.wustl.edu	37	11	114392712	114392712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152315.2	-1	validated	p.M399T	0.631	186	0%	255	36.9%	0	-	possibly_damaging(0.623)	tolerated(0.13)	deleterious(0.470)	NULL
SIDT2	51092	genome.wustl.edu	37	11	117063954	117063954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040455.1	+1	validated	p.A731T	1.000	118	0%	152	23.7%	24	0%	possibly_damaging(0.61)	tolerated(0.41)	neutral(0.226)	NULL
PCSK7	9159	genome.wustl.edu	37	11	117090350	117090350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004716.2	-1	reviewed	p.T427M	0.997	14	0%	33	33.3%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
PCSK7	9159	genome.wustl.edu	37	11	117094004	117094004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004716.2	-1	reviewed	p.R359C	0.045	27	0%	40	22.5%	47	0%	possibly_damaging(0.869)	tolerated(0.13)	deleterious(0.590)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
BACE1	23621	genome.wustl.edu	37	11	117161705	117161705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012104.3	-1	reviewed	p.T335A	1.000	279	0%	261	34.1%	31	0%	possibly_damaging(0.896)	tolerated(0.7)	neutral(0.355)	HMMPfam_Asp,superfamily_Acid proteases
BACE1	23621	genome.wustl.edu	37	11	117161706	117161706	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012104.3	-1	reviewed	p.G334	1.000	273	0%	267	25.5%	32	0%	-	-	-	HMMPfam_Asp,superfamily_Acid proteases
CEP164	22897	genome.wustl.edu	37	11	117279679	117279679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014956.4	+1	validated	p.S1228N	0.003	64	0%	100	38%	14	0%	benign(0.153)	deleterious(0.02)	neutral(0.397)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117391979	117391979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020693.2	-1	provisional	p.A420V	1.000	47	0%	40	25%	0	-	benign(0.01)	tolerated(0.59)	neutral(0.005)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TMPRSS13	84000	genome.wustl.edu	37	11	117779363	117779363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077263.1	-1	validated	p.A416T	1.000	9	0.000	7	0.571	61	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
IL10RA	3587	genome.wustl.edu	37	11	117864039	117864039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001558.3	+1	reviewed	p.A151T	0.032	62	0%	62	16.1%	2	0%	benign(0.061)	tolerated(0.7)	neutral(0.006)	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind
MLL	4297	genome.wustl.edu	37	11	118343056	118343056	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005933.2	+1	validated	p.L394	1.000	209	0.5%	337	14.2%	4	0%	-	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118374445	118374445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005933.2	+1	validated	p.G2610D	1.000	135	0%	154	27.9%	4	0%	probably_damaging(0.974)	-	-	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118486915	118486915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144758.1	+1	validated	p.R115Q	1.000	47	2.1%	68	42.6%	1	0%	possibly_damaging(0.827)	tolerated(0.21)	neutral(0.358)	HMMPfam_FHA,superfamily_SMAD/FHA domain
TREH	11181	genome.wustl.edu	37	11	118534070	118534070	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000264029	-1	known	p.D56	1.000	10	0.000	7	0.571	0	-	-	-	-	HMMPfam_Trehalase
BCL9L	283149	genome.wustl.edu	37	11	118772711	118772711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182557.2	-1	validated	p.R581W	1.000	16	0%	21	38.1%	26	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SLC37A4	2542	genome.wustl.edu	37	11	118898460	118898460	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000330775	-1	known	p.T168	0.017	10	0%	16	31.2%	55	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
HYOU1	10525	genome.wustl.edu	37	11	118919004	118919004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130991.1	-1	reviewed	p.A778T	0.002	56	0%	114	28.9%	222	0.4%	benign(0.001)	tolerated(0.53)	neutral(0.007)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
VPS11	55823	genome.wustl.edu	37	11	118942471	118942471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000300793	+1	known	p.A267T	1.000	50	0%	120	45.8%	31	0%	-	-	-	NULL
H2AFX	3014	genome.wustl.edu	37	11	118965698	118965698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002105.2	-1	reviewed	p.A136V	0.999	17	0%	14	42.9%	185	0%	benign(0.032)	tolerated(0.18)	neutral(0.058)	NULL
NLRX1	79671	genome.wustl.edu	37	11	119043621	119043621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024618.2	+1	reviewed	p.R51H	0.080	48	0%	71	33.8%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
NLRX1	79671	genome.wustl.edu	37	11	119044251	119044251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024618.2	+1	reviewed	p.R98H	1.000	68	0%	87	28.7%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NLRX1	79671	genome.wustl.edu	37	11	119045654	119045654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024618.2	+1	reviewed	p.D448N	1.000	29	0%	39	30.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRX1	79671	genome.wustl.edu	37	11	119050958	119050958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024618.2	+1	reviewed	p.R743H	1.000	20	0%	33	30.3%	11	0%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMSmart_SM00368,superfamily_RNI-like
ARHGEF12	23365	genome.wustl.edu	37	11	120298811	120298811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015313.1	+1	reviewed	p.R147H	1.000	356	0%	334	31.1%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00228,superfamily_PDZ domain-like
TBCEL	219899	genome.wustl.edu	37	11	120957709	120957709	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130047.1	+1	validated	p.P393	1.000	201	0.5%	198	36.4%	19	0%	-	-	-	superfamily_SSF54236
TECTA	7007	genome.wustl.edu	37	11	121032805	121032805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005422.2	+1	reviewed	p.N1666	0.997	70	0%	82	34.1%	0	-	-	-	-	NULL
BLID	414899	genome.wustl.edu	37	11	121986484	121986484	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001786.2	-1	reviewed	p.A49	0.000	263	0%	257	28%	0	-	-	-	-	NULL
C11orf63	79864	genome.wustl.edu	37	11	122795637	122795637	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024806.2	+1	validated	p.T299	0.000	277	0%	292	32.9%	2	0%	-	-	-	NULL
GRAMD1B	57476	genome.wustl.edu	37	11	123484264	123484264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020716.1	+1	validated	p.R566C	1.000	90	0%	69	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRAMD1B	57476	genome.wustl.edu	37	11	123489388	123489388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000322282	+1	known	p.V631I	0.000	25	0%	21	23.8%	0	-	benign(0)	tolerated(1)	-	NULL
SCN3B	55800	genome.wustl.edu	37	11	123516453	123516453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040151.1	-1	reviewed	p.V21I	0.001	133	0%	135	23.7%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
TMEM225	338661	genome.wustl.edu	37	11	123753868	123753868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013743.1	-1	provisional	p.R219C	0.001	131	0%	157	34.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
OR8G2	26492	genome.wustl.edu	37	11	124095513	124095513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007249.1	+1	provisional	p.R39H	0.613	233	0%	333	24.9%	0	-	-	-	-	superfamily_SSF81321
OR8G2	26492	genome.wustl.edu	37	11	124096127	124096127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007249.1	+1	provisional	p.T244A	0.000	190	0.5%	227	34.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8G5	219865	genome.wustl.edu	37	11	124134769	124134769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005198.1	+1	provisional	p.N16S	0.000	83	0%	100	30%	0	-	-	-	-	NULL
OR8B3	390271	genome.wustl.edu	37	11	124266407	124266407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005467.1	-1	provisional	p.V281M	0.009	324	0%	415	29.9%	0	-	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PANX3	116337	genome.wustl.edu	37	11	124489210	124489210	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052959.2	+1	reviewed	p.Y186*	1.000	112	0%	145	24.8%	0	-	-	-	-	NULL
ROBO3	64221	genome.wustl.edu	37	11	124741006	124741006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022370.3	+1	reviewed	p.A377V	1.000	39	0%	43	55.8%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124749237	124749237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022370.3	+1	reviewed	p.G1229S	1.000	28	0%	46	28.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ROBO4	54538	genome.wustl.edu	37	11	124765381	124765381	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019055.5	-1	validated	p.N336	1.000	71	0%	74	25.7%	3	0%	-	-	-	superfamily_Fibronectin type III
HEPACAM	220296	genome.wustl.edu	37	11	124793266	124793266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152722.4	-1	validated	p.T258I	1.000	154	0%	151	30.5%	0	-	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	NULL
DDX25	29118	genome.wustl.edu	37	11	125787038	125787038	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013264.3	+1	reviewed	p.N310	1.000	17	0%	40	25%	0	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDON	50937	genome.wustl.edu	37	11	125891387	125891387	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016952.4	-1	validated	p.P35	0.011	78	0%	113	31.9%	3	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
RPUSD4	84881	genome.wustl.edu	37	11	126079614	126079614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032795.2	-1	validated	p.G120D	1.000	187	0%	233	37.8%	30	0%	possibly_damaging(0.475)	tolerated(0.05)	deleterious(0.502)	HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom
FAM118B	79607	genome.wustl.edu	37	11	126126630	126126630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024556.3	+1	validated	p.L289F	1.000	131	0%	258	12.4%	45	0%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126294687	126294687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032531.3	-1	reviewed	p.R709W	1.000	36	0%	32	31.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126305175	126305175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032531.3	-1	reviewed	p.G526R	1.000	71	0%	93	34.4%	0	-	possibly_damaging(0.817)	deleterious(0.03)	deleterious(0.673)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128839029	128839029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142685.1	-1	validated	p.R2013C	1.000	75	0%	40	25%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128840854	128840854	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142685.1	-1	validated	p.A1404	0.000	37	0%	48	25%	7	0%	-	-	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129739555	129739555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006165.3	-1	validated	p.G1147E	0.989	209	0%	247	33.2%	32	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PRDM10	56980	genome.wustl.edu	37	11	129781998	129781998	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020228.2	-1	reviewed	p.S992	0.000	96	0%	90	32.2%	4	0%	-	-	-	NULL
PRDM10	56980	genome.wustl.edu	37	11	129807553	129807553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020228.2	-1	reviewed	p.A327T	1.000	175	0%	197	20.3%	4	0%	probably_damaging(0.995)	tolerated(0.16)	deleterious(0.517)	NULL
PRDM10	56980	genome.wustl.edu	37	11	129817095	129817095	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020228.2	-1	reviewed	p.T155	0.193	122	0%	134	28.4%	1	0%	-	-	-	NULL
ADAMTS8	11095	genome.wustl.edu	37	11	130286868	130286868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007037.4	-1	reviewed	p.L355F	1.000	30	0%	36	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SNX19	399979	genome.wustl.edu	37	11	130784267	130784267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014758.2	-1	validated	p.S523N	1.000	56	0%	77	29.9%	20	0%	possibly_damaging(0.737)	tolerated(0.13)	deleterious(0.522)	NULL
OPCML	4978	genome.wustl.edu	37	11	132307156	132307156	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002545.3	-1	reviewed	p.V208	0.016	101	0%	119	37%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF9B	22997	genome.wustl.edu	37	11	133789806	133789806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014987.1	-1	validated	p.A1272T	0.478	19	0%	24	25%	0	-	benign(0.045)	tolerated(1)	neutral(0.003)	NULL
NCAPD3	23310	genome.wustl.edu	37	11	134028310	134028310	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015261.2	-1	validated	p.C1316	0.000	43	0%	46	34.8%	36	0%	-	-	-	NULL
THYN1	29087	genome.wustl.edu	37	11	134119741	134119741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037305.1	-1	reviewed	p.G122V	1.000	243	0%	268	25%	169	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF55
ACAD8	27034	genome.wustl.edu	37	11	134131190	134131190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014384.2	+1	reviewed	p.A288V	1.000	38	0%	51	33.3%	37	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
SLC6A12	6539	genome.wustl.edu	37	12	305936	305936	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122847.1	-1	validated	p.Q396	1.000	26	0%	45	22.2%	1	0%	-	-	-	HMMPfam_SNF
SLC6A13	6540	genome.wustl.edu	37	12	333613	333613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016615.2	-1	provisional	p.A376V	1.000	44	0%	43	11.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SNF
KDM5A	5927	genome.wustl.edu	37	12	402328	402328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042603.1	-1	reviewed	p.S1488I	1.000	195	0.5%	211	10.9%	13	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
WNK1	65125	genome.wustl.edu	37	12	939228	939228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018979.3	+1	reviewed	p.V405I	1.000	167	0%	205	20%	16	0%	possibly_damaging(0.675)	tolerated(0.15)	deleterious(0.480)	superfamily_Kinase_like,HMMPfam_Pkinase
WNK1	65125	genome.wustl.edu	37	12	989189	989189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018979.3	+1	reviewed	p.L942M	0.986	110	0%	112	36.6%	1	0%	unknown(0)	deleterious(0.01)	-	NULL
WNK1	65125	genome.wustl.edu	37	12	994175	994175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018979.3	+1	reviewed	p.P1402H	0.009	199	0%	239	27.2%	47	0%	unknown(0)	deleterious(0.01)	-	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1992156	1992156	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172364.4	-1	reviewed	p.T454	0.000	8	0.000	11	0.364	0	-	-	-	-	HMMSmart_SM00327,superfamily_vWA-like
CACNA2D4	93589	genome.wustl.edu	37	12	2019092	2019092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172364.4	-1	reviewed	p.E156K	1.000	26	0%	27	22.2%	0	-	benign(0.372)	tolerated(0.06)	neutral(0.441)	HMMPfam_VWA_N
DCP1B	196513	genome.wustl.edu	37	12	2058485	2058485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152640.3	-1	validated	p.R514C	0.002	25	0%	20	35%	47	0%	benign(0.155)	tolerated(0.16)	neutral(0.073)	NULL
FOXM1	2305	genome.wustl.edu	37	12	2968282	2968282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_202002.1	-1	validated	p.T643M	0.002	56	0%	76	46.1%	110	0%	benign(0.02)	tolerated(0.11)	neutral(0.273)	NULL
FOXM1	2305	genome.wustl.edu	37	12	2975671	2975671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_202002.1	-1	validated	p.N288S	1.000	37	0%	61	32.8%	83	0%	possibly_damaging(0.604)	deleterious(0.05)	deleterious(0.555)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
TEAD4	7004	genome.wustl.edu	37	12	3131078	3131078	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003213.2	+1	reviewed	p.A264	0.986	145	0%	100	24%	20	0%	-	-	-	HMMPfam_TEA
PARP11	57097	genome.wustl.edu	37	12	3923299	3923299	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020367.4	-1	validated	p.L202	1.000	283	0%	384	39.1%	9	0%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
CCND2	894	genome.wustl.edu	37	12	4383358	4383358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001759.3	+1	validated	p.I51S	1.000	34	0%	36	27.8%	4	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Cyclin_N,superfamily_Cyclin-like
FGF23	8074	genome.wustl.edu	37	12	4479821	4479821	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020638.2	-1	reviewed	p.G148	0.936	113	0%	140	40%	0	-	-	-	-	HMMSmart_FGF,superfamily_Cytok_IL1_like
DYRK4	8798	genome.wustl.edu	37	12	4700406	4700406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003845.1	+1	provisional	p.Q20H	0.000	93	0%	111	12.6%	0	-	benign(0.159)	tolerated(0.11)	neutral(0.286)	NULL
NDUFA9	4704	genome.wustl.edu	37	12	4766990	4766990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005002.4	+1	reviewed	p.R132Q	1.000	135	0%	148	16.9%	197	0%	possibly_damaging(0.745)	tolerated(0.09)	deleterious(0.570)	HMMPfam_Epimerase,superfamily_NAD(P)-bd
KCNA6	3742	genome.wustl.edu	37	12	4920338	4920338	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002235.3	+1	reviewed	p.G377	0.037	105	0%	77	14.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
KCNA1	3736	genome.wustl.edu	37	12	5020795	5020795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000217.2	+1	reviewed	p.R84H	1.000	77	0%	81	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNA1	3736	genome.wustl.edu	37	12	5021260	5021260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000217.2	+1	reviewed	p.R239H	1.000	137	0%	169	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
LOC390282	390282	genome.wustl.edu	37	12	5141944	5141944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_372447.5	-1	model	p.R51H	0.947	44	0%	52	34.6%	0	-	-	-	-	NULL
KCNA5	3741	genome.wustl.edu	37	12	5153773	5153773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002234.2	+1	reviewed	p.R154C	1.000	43	0%	56	19.6%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
NTF3	4908	genome.wustl.edu	37	12	5604101	5604101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102654.1	+1	reviewed	p.R254W	1.000	73	0%	109	30.3%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_NGF,HMMSmart_NGF,superfamily_SSF57501
PLEKHG6	55200	genome.wustl.edu	37	12	6422879	6422879	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144856.1	+1	validated	p.R75*	0.246	11	0%	24	41.7%	1	0%	-	-	-	NULL
TNFRSF1A	7132	genome.wustl.edu	37	12	6443012	6443012	+	Silent	SNP	G	G	A	rs104895246		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001065.2	-1	reviewed	p.D71	0.988	16	0%	27	37%	70	0%	unknown(0)	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
TAPBPL	55080	genome.wustl.edu	37	12	6570023	6570023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018009.4	+1	validated	p.R404W	0.016	45	0%	58	37.9%	8	0%	benign(0.349)	deleterious(0.02)	deleterious(0.493)	NULL
MRPL51	51258	genome.wustl.edu	37	12	6601486	6601486	+	Missense_Mutation	SNP	C	C	T	rs191438555	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016497.3	-1	reviewed	p.R113H	1.000	144	0%	353	39.1%	445	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_MRP-L51
MRPL51	51258	genome.wustl.edu	37	12	6601555	6601555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016497.3	-1	reviewed	p.R90H	1.000	204	0%	381	31.2%	423	0%	benign(0.313)	tolerated(0.11)	neutral(0.369)	HMMPfam_MRP-L51
CHD4	1108	genome.wustl.edu	37	12	6682356	6682356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001273.2	-1	reviewed	p.P1814H	1.000	122	0%	157	24.2%	246	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_CHDCT2
ACRBP	84519	genome.wustl.edu	37	12	6747547	6747547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032489.2	-1	reviewed	p.Q511H	1.000	39	0%	74	18.9%	6	0%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
COPS7A	50813	genome.wustl.edu	37	12	6840179	6840179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016319.2	+1	validated	p.A268T	0.995	42	0%	72	13.9%	46	0%	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	NULL
MLF2	8079	genome.wustl.edu	37	12	6857977	6857977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005439.2	-1	validated	p.R244H	0.997	57	0%	102	9.8%	363	0.2%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
USP5	8078	genome.wustl.edu	37	12	6973102	6973102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098536.1	+1	validated	p.A688V	1.000	39	0%	49	22.4%	90	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UBA,HMMPfam_UCH,HMMSmart_SM00165,superfamily_Cysteine proteinases
C1R	715	genome.wustl.edu	37	12	7188502	7188502	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000290575	-1	known	p.H498	0.001	51	0%	79	46.8%	150	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CLSTN3	9746	genome.wustl.edu	37	12	7285734	7285734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014718.3	+1	validated	p.R60H	1.000	108	0%	135	14.8%	23	0%	benign(0.155)	tolerated(0.15)	neutral(0.255)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CD163L1	283316	genome.wustl.edu	37	12	7586259	7586259	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174941.4	-1	reviewed	p.N52	0.000	197	0%	266	32.7%	0	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7639259	7639259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004244.4	-1	validated	p.A765V	0.991	334	0%	354	23.2%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
RIMKLB	57494	genome.wustl.edu	37	12	8902618	8902618	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020734.2	+1	validated	p.C112	1.000	128	0%	132	28.8%	41	0%	-	-	-	HMMPfam_RimK,superfamily_Glutathione synthetase ATP-binding domain-like
A2ML1	144568	genome.wustl.edu	37	12	8987278	8987278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144670.3	+1	validated	p.Q161H	0.887	69	0%	149	18.1%	1	0%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_A2M_N
A2M	2	genome.wustl.edu	37	12	9225333	9225333	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000014.4	-1	reviewed	p.R1297	0.873	177	0%	208	11.5%	269	0%	-	-	-	NULL
DDX11L8	100302090	genome.wustl.edu	37	12	9453755	9453755	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000341155	+1	known	p.L387	1.000	22	0%	29	34.5%	2	0%	-	-	-	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLEC12A	160364	genome.wustl.edu	37	12	10131591	10131591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138337.5	+1	reviewed	p.R40C	0.111	175	0%	218	14.2%	0	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
KLRC2	3822	genome.wustl.edu	37	12	10586443	10586443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002260.3	-1	reviewed	p.A144T	0.001	545	0%	589	30.2%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TAS2R13	50838	genome.wustl.edu	37	12	11061777	11061777	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023920.2	-1	reviewed	p.L41	0.000	118	0%	143	18.2%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
LRP6	4040	genome.wustl.edu	37	12	12311986	12311986	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002336.2	-1	reviewed	p.E856	0.867	95	0%	96	14.6%	19	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP6	4040	genome.wustl.edu	37	12	12332763	12332763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002336.2	-1	reviewed	p.A509V	1.000	197	0%	262	34.7%	13	0%	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP6	4040	genome.wustl.edu	37	12	12334193	12334193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002336.2	-1	reviewed	p.R386H	1.000	217	0%	347	12.7%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
WBP11	51729	genome.wustl.edu	37	12	14952650	14952650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016312.2	-1	reviewed	p.R37C	1.000	59	0%	85	38.8%	52	0%	benign(0.071)	deleterious(0.01)	neutral(0.411)	HMMPfam_Wbp11
DERA	51071	genome.wustl.edu	37	12	16115839	16115839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015954.2	+1	validated	p.V156M	0.999	54	0%	42	33.3%	98	0%	possibly_damaging(0.502)	tolerated(0.46)	neutral(0.180)	HMMPfam_DeoC,superfamily_SSF51569
ENSG00000248116	0	genome.wustl.edu	37	12	19460008	19460008	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000510738	+1	novel	NULL	0.087	52	0%	56	12.5%	1	0%	-	-	-	-
SLCO1A2	6579	genome.wustl.edu	37	12	21453369	21453369	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021094.3	-1	reviewed	p.L275	0.001	161	0%	152	32.2%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
RECQL	5965	genome.wustl.edu	37	12	21630874	21630874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002907.3	-1	reviewed	p.Q244*	1.000	166	0%	204	33.3%	34	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC9	10060	genome.wustl.edu	37	12	21960406	21960406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005691.2	-1	reviewed	p.V1442fs	0.905	-	-	-	-	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC9	10060	genome.wustl.edu	37	12	21960410	21960410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005691.2	-1	reviewed	p.A1440V	1.000	218	0%	192	33.3%	0	-	possibly_damaging(0.804)	tolerated(0.49)	neutral(0.313)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC9	10060	genome.wustl.edu	37	12	22047092	22047092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005691.2	-1	reviewed	p.A559V	0.921	188	0%	195	31.3%	0	-	benign(0.051)	tolerated(1)	neutral(0.003)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ST8SIA1	6489	genome.wustl.edu	37	12	22486966	22486966	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003034.3	-1	reviewed	p.A67	0.998	58	0%	62	29%	0	-	-	-	-	HMMPfam_Glyco_transf_29
KIAA0528	9847	genome.wustl.edu	37	12	22659659	22659659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014802.1	-1	predicted	p.R378H	1.000	344	0%	388	34.8%	26	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CASC1	55259	genome.wustl.edu	37	12	25267681	25267681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018272.3	-1	validated	p.P507L	0.991	115	0%	131	12.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CASC1	55259	genome.wustl.edu	37	12	25299969	25299969	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018272.3	-1	validated	p.L219	0.002	273	0%	326	31%	2	0%	-	-	-	NULL
ITPR2	3709	genome.wustl.edu	37	12	26816670	26816670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002223.2	-1	validated	p.R554Q	0.999	433	0%	350	35.7%	4	0%	probably_damaging(0.983)	tolerated(0.25)	neutral(0.466)	HMMPfam_RYDR_ITPR,superfamily_IP3 receptor type 1 binding core domain 2
ASUN	55726	genome.wustl.edu	37	12	27070602	27070602	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018164.2	-1	validated	p.W318*	1.000	82	0%	78	23.1%	62	0%	-	-	-	HMMPfam_DUF2151
PPFIBP1	8496	genome.wustl.edu	37	12	27803065	27803065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003622.2	+1	reviewed	p.R198S	1.000	138	0%	170	28.8%	13	0%	benign(0.024)	tolerated(0.08)	neutral(0.301)	HMMPfam_Integrase_DNA
PTHLH	5744	genome.wustl.edu	37	12	28116302	28116302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198965.1	-1	reviewed	p.T168M	0.004	82	0%	96	20.8%	15	0%	unknown(0)	deleterious(0)	-	NULL
CCDC91	55297	genome.wustl.edu	37	12	28605481	28605481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018318.3	+1	validated	p.A332V	0.002	236	0%	238	34%	33	0%	benign(0)	tolerated(1)	-	NULL
OVCH1	341350	genome.wustl.edu	37	12	29624803	29624803	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183378.2	-1	validated	p.G596	0.002	98	0%	97	19.6%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
IPO8	10526	genome.wustl.edu	37	12	30816512	30816512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006390.2	-1	reviewed	p.A502V	0.991	134	0%	162	10.5%	26	0%	benign(0)	tolerated(1)	-	superfamily_ARM-type_fold
TSPAN11	441631	genome.wustl.edu	37	12	31106952	31106952	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080509.2	+1	validated	p.D9	0.315	72	0%	72	11.1%	3	0%	-	-	-	NULL
DENND5B	160518	genome.wustl.edu	37	12	31577547	31577547	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144973.3	-1	validated	p.G771	0.433	267	0%	387	34.1%	3	0%	-	-	-	NULL
DENND5B	160518	genome.wustl.edu	37	12	31632837	31632837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144973.3	-1	validated	p.P197L	1.000	144	0%	192	32.8%	9	0%	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	HMMPfam_DENN,HMMSmart_SM00799
FGD4	121512	genome.wustl.edu	37	12	32764204	32764204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139241.2	+1	reviewed	p.R442H	1.000	141	0%	154	20.8%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PKP2	5318	genome.wustl.edu	37	12	33030914	33030914	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004572.3	-1	reviewed	p.T300	0.000	33	0%	37	29.7%	46	0%	-	-	-	NULL
KIF21A	55605	genome.wustl.edu	37	12	39734805	39734805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017641.3	-1	validated	p.L658	0.990	164	0%	165	18.8%	5	0%	-	-	-	superfamily_WD40 repeat-like
ABCD2	225	genome.wustl.edu	37	12	40013157	40013157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005164.3	-1	reviewed	p.Q87H	1.000	131	0%	144	41%	0	-	benign(0.106)	tolerated(0.1)	neutral(0.294)	HMMPfam_ABC_membrane_2
C12orf40	283461	genome.wustl.edu	37	12	40040213	40040213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031748.2	+1	validated	p.M95I	0.991	375	0%	382	25.4%	0	-	benign(0)	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40702295	40702295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198578.3	+1	reviewed	p.A1329V	1.000	73	0%	88	22.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52058
GXYLT1	283464	genome.wustl.edu	37	12	42503456	42503456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173601.1	-1	validated	p.T175M	0.985	92	0%	93	38.7%	15	0%	possibly_damaging(0.456)	tolerated(0.09)	neutral(0.446)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
NELL2	4753	genome.wustl.edu	37	12	45105094	45105094	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145107.1	-1	reviewed	p.S440	1.000	106	0%	127	10.2%	1	0%	-	-	-	superfamily_ConA_like_lec_gl
ARID2	196528	genome.wustl.edu	37	12	46244497	46244497	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000422737	+1	known	p.Q838*	1.000	271	0%	354	29.9%	18	0%	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	NULL
ARID2	196528	genome.wustl.edu	37	12	46244646	46244646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152641.2	+1	validated	p.P914S	1.000	326	0%	412	25.2%	8	0%	benign(0.108)	tolerated(0.25)	neutral(0.045)	NULL
ARID2	196528	genome.wustl.edu	37	12	46245819	46245819	+	Missense_Mutation	SNP	C	C	T	rs61925814		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152641.2	+1	validated	p.P1305S	1.000	162	0%	164	23.8%	20	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARID2	196528	genome.wustl.edu	37	12	46287274	46287274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152641.2	+1	validated	p.A1740V	1.000	214	0%	265	35.5%	24	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
HDAC7	51564	genome.wustl.edu	37	12	48183625	48183625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015401.3	-1	reviewed	p.A688T	1.000	41	0%	46	43.5%	64	0%	benign(0.251)	deleterious(0.02)	neutral(0.409)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
COL2A1	1280	genome.wustl.edu	37	12	48372130	48372130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001844.4	-1	reviewed	p.V983I	1.000	23	0%	21	23.8%	9	0%	unknown(0)	tolerated(0.15)	-	HMMPfam_Collagen
OR8S1	341568	genome.wustl.edu	37	12	48921844	48921844	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005203.2	+1	validated	p.C346	0.049	24	0%	28	25%	0	-	-	-	-	NULL
ADCY6	112	genome.wustl.edu	37	12	49170361	49170361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015270.3	-1	reviewed	p.R462H	1.000	15	0%	25	32%	37	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
ADCY6	112	genome.wustl.edu	37	12	49177139	49177139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015270.3	-1	reviewed	p.R27C	1.000	10	0%	26	42.3%	10	0%	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	NULL
ADCY6	112	genome.wustl.edu	37	12	49177201	49177201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015270.3	-1	reviewed	p.G6D	1.000	12	0%	32	31.2%	10	0%	benign(0.051)	tolerated(0.39)	neutral(0.019)	NULL
CACNB3	784	genome.wustl.edu	37	12	49220174	49220174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000725.2	+1	validated	p.R256H	1.000	24	0%	42	31%	69	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNB3	784	genome.wustl.edu	37	12	49220846	49220846	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000725.2	+1	validated	p.T360	0.994	31	0%	63	27%	58	0%	-	-	-	HMMPfam_Ca_channel_B,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC65	85478	genome.wustl.edu	37	12	49308188	49308188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033124.4	+1	validated	p.S101Y	1.000	90	0%	130	29.2%	4	0%	possibly_damaging(0.839)	tolerated(0.05)	deleterious(0.666)	NULL
PRKAG1	5571	genome.wustl.edu	37	12	49397646	49397646	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002733.3	-1	reviewed	p.G199	1.000	119	0%	215	41.9%	107	0%	benign(0.164)	tolerated(0.31)	neutral(0.042)	HMMPfam_CBS,superfamily_SSF54631
MLL2	8085	genome.wustl.edu	37	12	49420660	49420660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003482.3	-1	validated	p.R5030H	1.000	52	0%	56	23.2%	30	0%	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49425823	49425823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003482.3	-1	validated	p.L4222P	0.995	22	0%	21	19%	15	0%	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49427550	49427550	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003482.3	-1	validated	p.G3646	0.323	21	0%	22	31.8%	6	0%	-	-	-	NULL
SPATS2	65244	genome.wustl.edu	37	12	49888574	49888574	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023071.3	+1	validated	p.G105	0.180	54	0%	68	36.8%	35	0%	-	-	-	HMMPfam_DUF1387
FAM186B	84070	genome.wustl.edu	37	12	49981394	49981394	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032130.2	-1	validated	p.D892	0.008	21	0%	35	62.9%	0	-	-	-	-	NULL
PRPF40B	25766	genome.wustl.edu	37	12	50027829	50027829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031698.1	+1	provisional	p.P234S	1.000	28	0%	40	27.5%	1	0%	unknown(0)	tolerated(0.71)	-	NULL
PRPF40B	25766	genome.wustl.edu	37	12	50030623	50030623	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031698.1	+1	provisional	p.E495	1.000	37	0%	45	31.1%	33	0%	-	-	-	HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain
FMNL3	91010	genome.wustl.edu	37	12	50048748	50048748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175736.4	-1	validated	p.R302H	1.000	210	0%	152	26.3%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Drf_FH3
NCKAP5L	57701	genome.wustl.edu	37	12	50196757	50196757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037806.3	-1	validated	p.A72V	0.998	36	0%	50	28%	24	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
BCDIN3D	144233	genome.wustl.edu	37	12	50232768	50232768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181708.2	-1	validated	p.L89F	0.995	85	0%	138	25.4%	14	0%	possibly_damaging(0.951)	deleterious(0.04)	deleterious(0.743)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
GPD1	2819	genome.wustl.edu	37	12	50501368	50501368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005276.2	+1	provisional	p.A211T	0.999	209	0%	230	28.7%	0	-	possibly_damaging(0.729)	deleterious(0.02)	deleterious(0.649)	HMMPfam_NAD_Gly3P_dh_C,PatternScan_NAD_G3PDH,superfamily_6DGDH_C_like
LARP4	113251	genome.wustl.edu	37	12	50847297	50847297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199188.2	+1	validated	p.D293N	1.000	243	0%	359	30.6%	11	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATF1	466	genome.wustl.edu	37	12	51207796	51207796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005171.3	+1	validated	p.A111V	1.000	71	0%	99	30.3%	29	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
LETMD1	25875	genome.wustl.edu	37	12	51450194	51450194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015416.3	+1	validated	p.R275H	1.000	196	0%	253	20.9%	64	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LETM1
SLC4A8	9498	genome.wustl.edu	37	12	51868951	51868951	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039960.1	+1	validated	p.T711	1.000	96	0%	101	14.9%	0	-	-	-	-	HMMPfam_HCO3_cotransp
KRT7	3855	genome.wustl.edu	37	12	52639287	52639287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005556.3	+1	reviewed	p.A359V	0.234	52	0%	70	37.1%	941	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_Filament
KRT85	3891	genome.wustl.edu	37	12	52756255	52756255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002283.3	-1	reviewed	p.R360C	0.989	104	0%	125	40.8%	0	-	benign(0.07)	tolerated(0.28)	neutral(0.036)	HMMPfam_Filament
KRT2	3849	genome.wustl.edu	37	12	53043735	53043735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000423.2	-1	reviewed	p.R275H	0.971	130	0%	147	23.1%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_Filament
KRT4	3851	genome.wustl.edu	37	12	53201476	53201476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002272.2	-1	reviewed	p.D507V	1.000	176	0%	219	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT78	196374	genome.wustl.edu	37	12	53238425	53238425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173352.2	-1	reviewed	p.S280I	0.003	121	0%	208	36.5%	0	-	possibly_damaging(0.667)	deleterious(0.01)	deleterious(0.641)	HMMPfam_Filament
TENC1	23371	genome.wustl.edu	37	12	53452204	53452204	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015319.2	+1	reviewed	p.K410	1.000	30	0%	32	12.5%	4	0%	-	-	-	superfamily_C2_CaLB,HMMPfam_PTEN_C2
TENC1	23371	genome.wustl.edu	37	12	53456880	53456880	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015319.2	+1	reviewed	p.S1287	0.381	26	0%	32	50%	13	0%	-	-	-	HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729
MFSD5	84975	genome.wustl.edu	37	12	53647586	53647586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032889.4	+1	validated	p.V323I	0.976	123	0%	191	33%	58	0%	benign(0.134)	tolerated(0.15)	neutral(0.253)	HMMPfam_DUF791,superfamily_MFS general substrate transporter
ESPL1	9700	genome.wustl.edu	37	12	53663522	53663522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012291.4	+1	validated	p.R266C	0.000	49	0%	88	37.5%	3	0%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
MAP3K12	7786	genome.wustl.edu	37	12	53880947	53880947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000444144	-1	known	p.A77T	1.000	63	0%	62	11.3%	4	0%	possibly_damaging(0.736)	tolerated(0.34)	neutral(0.292)	NULL
HOXC13	3229	genome.wustl.edu	37	12	54339018	54339018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017410.2	+1	reviewed	p.A324V	1.000	46	0%	80	32.5%	0	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
HOXC9	3225	genome.wustl.edu	37	12	54394039	54394039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006897.1	+1	reviewed	p.L23I	1.000	19	0%	21	28.6%	2	0%	benign(0.144)	tolerated(0.14)	neutral(0.262)	HMMPfam_Hox9_act
HOXC9	3225	genome.wustl.edu	37	12	54394124	54394124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006897.1	+1	reviewed	p.P51L	1.000	12	0%	16	37.5%	1	0%	benign(0.311)	deleterious(0.01)	deleterious(0.503)	HMMPfam_Hox9_act
HOXC4	3221	genome.wustl.edu	37	12	54448941	54448941	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014620.4	+1	reviewed	p.S249	1.000	12	0%	11	36.4%	10	0%	-	-	-	NULL
SMUG1	23583	genome.wustl.edu	37	12	54576126	54576126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014311.1	-1	provisional	p.Q189H	1.000	117	0%	199	32.2%	7	0%	benign(0.053)	tolerated(0.12)	neutral(0.264)	HMMPfam_UDG,superfamily_DNA glycosylase
HNRNPA1	3178	genome.wustl.edu	37	12	54675243	54675243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031157.2	+1	reviewed	p.L30P	1.000	57	0%	60	26.7%	629	0.3%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NCKAP1L	3071	genome.wustl.edu	37	12	54917308	54917308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005337.4	+1	reviewed	p.R670H	1.000	175	0%	283	14.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nckap1
PDE1B	5153	genome.wustl.edu	37	12	54969384	54969384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000924.3	+1	validated	p.R412H	1.000	114	0%	166	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,superfamily_SSF109604
OR6C1	390321	genome.wustl.edu	37	12	55714731	55714731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005182.1	+1	provisional	p.M116I	1.000	111	0%	127	10.2%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR6C4	341418	genome.wustl.edu	37	12	55945547	55945547	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005494.1	+1	provisional	p.Y179	0.000	239	0%	250	13.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
RDH5	5959	genome.wustl.edu	37	12	56117671	56117671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002905.3	+1	reviewed	p.R191W	1.000	45	0%	92	25%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-bd
RDH5	5959	genome.wustl.edu	37	12	56118123	56118123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002905.3	+1	reviewed	p.R251C	0.450	49	0%	97	15.5%	0	-	possibly_damaging(0.509)	tolerated(0.06)	deleterious(0.493)	superfamily_NAD(P)-bd
SARNP	84324	genome.wustl.edu	37	12	56151231	56151231	+	RNA	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_026722.1	-1	reviewed	NULL	0.997	48	0%	80	50%	272	0%	-	-	-	-
DGKA	1606	genome.wustl.edu	37	12	56333214	56333214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001345.4	+1	reviewed	p.G204R	1.000	237	0%	377	34.7%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_EF-hand,superfamily_Cysteine-rich domain
LOC100131294	100131294	genome.wustl.edu	37	12	56374851	56374851	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001718622.2	-1	model	p.H113	0.010	32	0%	34	11.8%	0	-	-	-	-	NULL
SUOX	6821	genome.wustl.edu	37	12	56398736	56398736	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000456.2	+1	reviewed	p.T521	0.141	174	0%	179	36.3%	54	0%	-	-	-	HMMPfam_Mo-co_dimer,superfamily_Ig_E-set
IKZF4	64375	genome.wustl.edu	37	12	56415303	56415303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022465.3	+1	validated	p.R9H	1.000	4	0.000	14	0.500	0	-	unknown(0)	deleterious(0)	-	NULL
PA2G4	5036	genome.wustl.edu	37	12	56504379	56504379	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006191.2	+1	reviewed	p.R249*	0.999	97	0%	153	32%	681	0%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,superfamily_SSF46785
ESYT1	23344	genome.wustl.edu	37	12	56524592	56524592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015292.2	+1	validated	p.W150C	1.000	63	0%	71	21.1%	85	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ESYT1	23344	genome.wustl.edu	37	12	56536639	56536639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015292.2	+1	validated	p.G970E	0.987	154	0%	269	34.2%	111	0%	possibly_damaging(0.701)	tolerated(0.31)	neutral(0.279)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SMARCC2	6601	genome.wustl.edu	37	12	56572288	56572288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003075.3	-1	reviewed	p.G404R	1.000	106	0%	125	31.2%	120	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
PAN2	9924	genome.wustl.edu	37	12	56713762	56713762	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127460.2	-1	reviewed	p.S948	0.322	84	0%	117	25.6%	17	0%	-	-	-	superfamily_Cysteine proteinases
STAT2	6773	genome.wustl.edu	37	12	56749939	56749939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005419.3	-1	reviewed	p.R88W	0.995	155	0%	169	24.9%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
TIMELESS	8914	genome.wustl.edu	37	12	56824036	56824036	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003920.3	-1	validated	p.K313	1.000	86	0%	86	32.6%	40	0%	-	-	-	NULL
RBMS2	5939	genome.wustl.edu	37	12	56982084	56982084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002898.3	+1	reviewed	p.P357S	1.000	105	0%	140	24.3%	18	0%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	NULL
BAZ2A	11176	genome.wustl.edu	37	12	56992456	56992456	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013449.3	-1	validated	p.R1888	1.000	43	0%	69	34.8%	32	0%	-	-	-	HMMSmart_SM00297,superfamily_Bromodomain
BAZ2A	11176	genome.wustl.edu	37	12	56993100	56993100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013449.3	-1	validated	p.R1741C	1.000	42	0%	54	29.6%	31	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FYVE/PHD zinc finger
NACA	4666	genome.wustl.edu	37	12	57115073	57115073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113203.1	-1	validated	p.P81S	0.994	127	0%	141	15.6%	0	-	unknown(0)	deleterious(0)	-	NULL
GPR182	11318	genome.wustl.edu	37	12	57389152	57389152	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007264.3	+1	reviewed	p.R53	0.006	111	0%	222	17.6%	0	-	-	-	-	superfamily_SSF81321
GPR182	11318	genome.wustl.edu	37	12	57389842	57389842	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007264.3	+1	reviewed	p.L283	0.803	152	0%	228	42.5%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MYO1A	4640	genome.wustl.edu	37	12	57441501	57441501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005379.2	-1	reviewed	p.A79T	1.000	69	0%	74	20.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
NAB2	4665	genome.wustl.edu	37	12	57484996	57484997	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005967.3	+1	reviewed	p.Y58fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_NCD1
LRP1	4035	genome.wustl.edu	37	12	57539070	57539070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002332.2	+1	reviewed	p.Y213C	1.000	27	0%	32	21.9%	6	0%	probably_damaging(0.964)	tolerated(0.1)	deleterious(0.693)	superfamily_YWTD domain
DDIT3	1649	genome.wustl.edu	37	12	57910662	57910662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004083.4	-1	validated	p.R147H	1.000	71	0%	137	34.3%	224	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,HMMPfam_bZIP_2
MBD6	114785	genome.wustl.edu	37	12	57919143	57919143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052897.3	+1	validated	p.S131N	0.999	28	0%	51	35.3%	45	0%	unknown(0)	-	-	NULL
AGAP2	116986	genome.wustl.edu	37	12	58125419	58125419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001122772.1	-1	validated	p.R654W	0.985	27	0%	74	35.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYP27B1	1594	genome.wustl.edu	37	12	58157590	58157590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000785.3	-1	reviewed	p.T406M	1.000	33	0%	64	34.4%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
METTL1	4234	genome.wustl.edu	37	12	58163160	58163160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023033.3	-1	reviewed	p.A139V	1.000	35	0%	27	25.9%	43	0%	possibly_damaging(0.93)	tolerated(0.21)	neutral(0.420)	NULL
LRIG3	121227	genome.wustl.edu	37	12	59282693	59282693	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153377.3	-1	provisional	p.G237	0.576	331	0%	336	32.7%	14	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like
SLC16A7	9194	genome.wustl.edu	37	12	60098642	60098642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004731.3	+1	provisional	p.W20C	1.000	81	0%	74	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS_gen_substrate_transporter
USP15	9958	genome.wustl.edu	37	12	62783428	62783428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006313.1	+1	provisional	p.F505S	1.000	239	0%	335	30.4%	17	0%	benign(0.028)	deleterious(0)	neutral(0.446)	HMMPfam_UCH,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,superfamily_SSF54001
MON2	23041	genome.wustl.edu	37	12	62960129	62960129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015026.2	+1	validated	p.P1408S	1.000	156	0%	186	29%	17	0%	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	superfamily_ARM-type_fold
MON2	23041	genome.wustl.edu	37	12	62979236	62979236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015026.2	+1	validated	p.R1621H	1.000	111	0%	176	31.2%	21	0%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	superfamily_ARM-type_fold
TMEM5	10329	genome.wustl.edu	37	12	64202554	64202554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014254.1	+1	provisional	p.C338*	1.000	239	0%	293	29%	61	0%	-	-	-	NULL
C12orf66	144577	genome.wustl.edu	37	12	64587847	64587847	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152440.4	-1	validated	p.R371	0.824	236	0%	324	34.3%	3	0%	-	-	-	HMMPfam_DUF2003
C12orf56	115749	genome.wustl.edu	37	12	64697453	64697453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099676.2	-1	validated	p.A199S	1.000	43	0%	57	36.8%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
XPOT	11260	genome.wustl.edu	37	12	64808770	64808770	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007235.3	+1	reviewed	e2+1	1.000	56	0%	114	28.1%	0	-	-	-	-	-
GRIP1	23426	genome.wustl.edu	37	12	66770826	66770826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021150.3	-1	reviewed	p.R865C	1.000	175	0%	253	30.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
GRIP1	23426	genome.wustl.edu	37	12	66838475	66838475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021150.3	-1	reviewed	p.A474T	1.000	165	0%	168	35.7%	6	0%	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
DYRK2	8445	genome.wustl.edu	37	12	68051508	68051508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006482.2	+1	reviewed	p.R274Q	1.000	123	0%	240	30.4%	20	0%	benign(0.417)	deleterious(0.01)	deleterious(0.540)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NUP107	57122	genome.wustl.edu	37	12	69125007	69125007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020401.2	+1	reviewed	p.R618C	1.000	101	0%	103	39.8%	71	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nup84_Nup100
BEST3	144453	genome.wustl.edu	37	12	70087571	70087571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032735.2	-1	validated	p.R122C	1.000	34	0%	31	12.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Bestrophin
CNOT2	4848	genome.wustl.edu	37	12	70723292	70723292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014515.4	+1	provisional	p.V110I	1.000	260	0.4%	281	27%	64	0%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
KCNMB4	27345	genome.wustl.edu	37	12	70824288	70824288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014505.4	+1	reviewed	p.R163H	1.000	226	0%	188	35.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CaKB
PTPRB	5787	genome.wustl.edu	37	12	70934736	70934736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001109754.1	-1	reviewed	p.E1832D	1.000	44	2.3%	42	28.6%	1	0%	possibly_damaging(0.912)	tolerated(0.37)	neutral(0.383)	NULL
PTPRB	5787	genome.wustl.edu	37	12	70965039	70965039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001109754.1	-1	reviewed	p.R1046H	0.000	60	0%	72	9.7%	3	0%	possibly_damaging(0.836)	tolerated(0.13)	deleterious(0.572)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LGR5	8549	genome.wustl.edu	37	12	71955587	71955587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003667.2	+1	provisional	p.S271L	0.993	97	0%	101	28.7%	18	5.5%	benign(0.005)	tolerated(0.64)	neutral(0.003)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like
ZFC3H1	196441	genome.wustl.edu	37	12	72028071	72028071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144982.4	-1	validated	p.R792C	1.000	79	0%	161	26.7%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TRHDE	29953	genome.wustl.edu	37	12	73012793	73012793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013381.2	+1	reviewed	p.R770H	1.000	176	0%	187	15.5%	0	-	possibly_damaging(0.508)	deleterious(0.02)	deleterious(0.553)	NULL
ZDHHC17	23390	genome.wustl.edu	37	12	77243229	77243229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015336.2	+1	validated	p.T580M	1.000	12	0%	18	27.8%	14	7.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
E2F7	144455	genome.wustl.edu	37	12	77423798	77423798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203394.2	-1	validated	p.A566V	0.022	198	0%	208	33.2%	11	0%	benign(0.006)	deleterious(0.05)	neutral(0.345)	NULL
E2F7	144455	genome.wustl.edu	37	12	77427764	77427765	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203394.2	-1	validated	p.Y394fs	0.001:0.877	-	-	-	-	-	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78515860	78515860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014903.4	+1	validated	p.S1297I	1.000	76	0%	72	33.3%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
LOC338756	338756	genome.wustl.edu	37	12	79952661	79952661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001714544.1	+1	model	p.P71T	0.038	51	0%	82	35.4%	0	-	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80626810	80626810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343203.1	+1	model	p.K191N	0.964	98	0%	102	39.2%	0	-	benign(0.052)	tolerated(0.27)	neutral(0.037)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80660254	80660254	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343203.1	+1	model	p.L691	0.999	51	0%	67	19.4%	0	-	-	-	-	superfamily_Serine proterase inhibitors
PPFIA2	8499	genome.wustl.edu	37	12	81734984	81734984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003625.2	-1	reviewed	p.A756T	1.000	149	0%	141	28.4%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
CEP290	80184	genome.wustl.edu	37	12	88487641	88487641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025114.3	-1	reviewed	p.R1072Q	1.000	69	0%	70	25.7%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATP2B1	490	genome.wustl.edu	37	12	90013985	90013985	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001682.2	-1	reviewed	p.H540	1.000	73	2.7%	97	33%	8	0%	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
C12orf74	338809	genome.wustl.edu	37	12	93100538	93100538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037671.2	+1	validated	p.R44H	0.471	73	0%	79	34.2%	0	-	probably_damaging(0.965)	-	-	NULL
EEA1	8411	genome.wustl.edu	37	12	93246009	93246009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003566.3	-1	validated	p.R195H	0.872	157	0%	236	32.6%	2	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94654609	94654609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005761.1	+1	provisional	p.F1148Y	0.996	62	0%	84	25%	2	0%	benign(0.004)	tolerated(0.42)	neutral(0.014)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
PLXNC1	10154	genome.wustl.edu	37	12	94691201	94691201	+	Splice_Site	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005761.1	+1	provisional	e26+2	1.000	56	0%	63	27%	0	-	-	-	-	-
FGD6	55785	genome.wustl.edu	37	12	95488456	95488456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018351.3	-1	validated	p.R1171K	1.000	398	0%	402	38.6%	8	0%	probably_damaging(0.983)	tolerated(0.17)	deleterious(0.488)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FGD6	55785	genome.wustl.edu	37	12	95604529	95604529	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018351.3	-1	validated	p.S177	0.443	119	0%	235	31.9%	3	0%	-	-	-	NULL
FGD6	55785	genome.wustl.edu	37	12	95604850	95604850	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018351.3	-1	validated	p.S70	0.000	338	0%	510	20%	2	0%	-	-	-	NULL
ENSG00000227825	0	genome.wustl.edu	37	12	98849316	98849316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000370696	-1	known	p.W194*	1.000	18	0%	23	21.7%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
TMPO	7112	genome.wustl.edu	37	12	98927088	98927088	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003276.2	+1	reviewed	p.S351	0.001	121	0%	136	42.6%	43	0%	-	-	-	NULL
ANKS1B	56899	genome.wustl.edu	37	12	99447016	99447016	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152788.3	-1	validated	p.G899	0.031	47	0%	63	25.4%	1	0%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
UHRF1BP1L	23074	genome.wustl.edu	37	12	100441377	100441377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015054.1	-1	validated	p.A1338T	0.932	193	0%	252	32.9%	30	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100453702	100453702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015054.1	-1	validated	p.A557T	1.000	199	0%	189	14.8%	9	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
GAS2L3	283431	genome.wustl.edu	37	12	101005850	101005850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174942.1	+1	provisional	p.A126T	1.000	184	0%	203	40.4%	4	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
UTP20	27340	genome.wustl.edu	37	12	101767384	101767384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014503.2	+1	validated	p.G2324R	0.996	92	0%	145	21.4%	38	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101777016	101777016	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014503.2	+1	validated	p.T2618	0.000	100	0%	136	28.7%	54	0%	-	-	-	NULL
MYBPC1	4604	genome.wustl.edu	37	12	102071026	102071026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002465.2	+1	validated	p.V988G	0.996	117	0%	176	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SYCP3	50511	genome.wustl.edu	37	12	102122945	102122945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153694.4	-1	reviewed	p.A200V	0.997	118	0%	188	17%	0	-	benign(0.005)	tolerated(1)	-	HMMPfam_Cor1
GNPTAB	79158	genome.wustl.edu	37	12	102147186	102147186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024312.4	-1	reviewed	p.R1189Q	1.000	130	0%	179	30.2%	25	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102155100	102155100	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024312.4	-1	reviewed	p.T980	0.004	193	0.5%	252	16.3%	25	0%	-	-	-	NULL
ASCL1	429	genome.wustl.edu	37	12	103352361	103352361	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004316.3	+1	reviewed	p.P113	0.999	6	0.000	14	0.429	0	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	103988252	103988252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017564.9	+1	reviewed	p.R99W	0.983	153	0%	128	31.2%	0	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
TXNRD1	7296	genome.wustl.edu	37	12	104645380	104645380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000429002	+1	known	p.R56I	0.004	82	0%	115	14.8%	0	-	benign(0.068)	tolerated(0.13)	neutral(0.257)	superfamily_Thioredoxin-like
EID3	493861	genome.wustl.edu	37	12	104697825	104697825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008394.1	+1	provisional	p.R38H	0.269	28	0%	33	27.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Nse4
APPL2	55198	genome.wustl.edu	37	12	105568110	105568110	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018171.3	-1	validated	p.G659	1.000	119	0.8%	107	29.9%	57	1.7%	-	-	-	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106715463	106715463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152772.1	+1	provisional	p.G205D	0.000	82	0%	85	29.4%	6	0%	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_Tcp11
PWP1	11137	genome.wustl.edu	37	12	108082572	108082572	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007062.1	+1	provisional	p.G104	0.000	57	0%	49	18.4%	74	0%	-	-	-	superfamily_WD40 repeat-like
SART3	9733	genome.wustl.edu	37	12	108917263	108917263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014706.3	-1	reviewed	p.D955N	1.000	143	0%	109	31.2%	57	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lsm_interact
TMEM119	338773	genome.wustl.edu	37	12	108985927	108985927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181724.2	-1	validated	p.S78L	0.001	26	0%	53	24.5%	4	0%	benign(0.072)	tolerated(0.32)	neutral(0.029)	NULL
SSH1	54434	genome.wustl.edu	37	12	109200124	109200124	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018984.3	-1	validated	p.R260*	1.000	164	0%	155	25.2%	13	0%	-	-	-	HMMPfam_DEK_C,superfamily_DEK C-terminal domain
SVOP	55530	genome.wustl.edu	37	12	109332674	109332674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018711.2	-1	validated	p.R215H	1.000	329	0%	408	36%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
USP30	84749	genome.wustl.edu	37	12	109523683	109523683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032663.3	+1	validated	p.R501C	1.000	59	0%	69	33.3%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54001
ACACB	32	genome.wustl.edu	37	12	109617075	109617075	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001093.3	+1	reviewed	p.P540	0.000	51	0%	84	31%	0	-	-	-	-	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
ACACB	32	genome.wustl.edu	37	12	109703051	109703051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001093.3	+1	reviewed	p.R2360H	1.000	70	0%	80	28.7%	3	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_ClpP/crotonase
GIT2	9815	genome.wustl.edu	37	12	110385110	110385110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_057169.3	-1	reviewed	p.A531V	0.682	73	0%	78	39.7%	16	0%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ATP2A2	488	genome.wustl.edu	37	12	110780120	110780120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170665.3	+1	reviewed	p.A729T	1.000	119	0%	82	24.4%	167	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
GPN3	51184	genome.wustl.edu	37	12	110893651	110893651	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016301.3	-1	validated	p.L179	1.000	111	0%	174	33.9%	22	0%	-	-	-	HMMPfam_ATP_bind_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
HVCN1	84329	genome.wustl.edu	37	12	111088062	111088062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040107.1	-1	validated	p.R223C	1.000	105	0%	97	23.7%	9	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ENSG00000238168	0	genome.wustl.edu	37	12	112019522	112019522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000423386	+1	known	p.R107H	0.001	32	0%	80	33.8%	0	-	-	-	-	HMMPfam_CD225
ALDH2	217	genome.wustl.edu	37	12	112221082	112221082	+	Missense_Mutation	SNP	C	C	T	rs190764869	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000690.2	+1	reviewed	p.R114W	1.000	47	0%	48	31.2%	92	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
C12orf51	283450	genome.wustl.edu	37	12	112673310	112673310	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001109662.2	-1	validated	p.P1486fs	1.000	-	-	-	-	-	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112681181	112681181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001109662.2	-1	validated	p.T1223M	1.000	48	0%	43	23.3%	13	0%	probably_damaging(0.999)	-	-	NULL
DTX1	1840	genome.wustl.edu	37	12	113534526	113534526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004416.2	+1	reviewed	p.R549W	0.975	22	0%	29	37.9%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RASAL1	8437	genome.wustl.edu	37	12	113565632	113565632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004658.1	-1	reviewed	p.T95A	0.000	97	0%	159	39.6%	4	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DDX54	79039	genome.wustl.edu	37	12	113614668	113614668	+	Silent	SNP	G	G	A	rs143973951	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001111322.1	-1	reviewed	p.Y243	0.967	94	0%	133	34.6%	93	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX54	79039	genome.wustl.edu	37	12	113617010	113617010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001111322.1	-1	reviewed	p.R168C	1.000	22	0%	24	25%	80	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TPCN1	53373	genome.wustl.edu	37	12	113664687	113664687	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001143819.1	+1	validated	p.P82	0.929	36	0%	58	13.8%	3	0%	-	-	-	NULL
TPCN1	53373	genome.wustl.edu	37	12	113698250	113698250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001143819.1	+1	validated	p.A136T	0.008	56	0%	83	14.5%	0	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
PLBD2	196463	genome.wustl.edu	37	12	113826407	113826407	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173542.3	+1	validated	p.A582	0.004	45	0%	51	19.6%	28	0%	-	-	-	HMMPfam_Phospholip_B
SDS	10993	genome.wustl.edu	37	12	113836943	113836943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006843.2	-1	reviewed	p.G56D	1.000	14	0%	30	16.7%	1	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
RBM19	9904	genome.wustl.edu	37	12	114356247	114356247	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016196.3	-1	reviewed	p.H797	0.189	62	0%	78	32.1%	29	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
MED13L	23389	genome.wustl.edu	37	12	116404036	116404036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015335.3	-1	validated	p.R2080C	1.000	284	0%	279	28.7%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED13L	23389	genome.wustl.edu	37	12	116422008	116422008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015335.3	-1	validated	p.A1503V	1.000	50	0%	71	28.2%	26	0%	unknown(0)	deleterious(0)	-	HMMPfam_TRAP_240kDa
MED13L	23389	genome.wustl.edu	37	12	116457747	116457747	+	Missense_Mutation	SNP	G	G	A	rs191743300	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015335.3	-1	validated	p.T219M	1.000	151	0%	188	16.5%	16	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C12orf49	79794	genome.wustl.edu	37	12	117157621	117157621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024738.1	-1	predicted	p.A161T	1.000	77	0%	93	31.2%	52	0%	benign(0.011)	deleterious(0.04)	neutral(0.349)	HMMPfam_DUF2054
C12orf49	79794	genome.wustl.edu	37	12	117158129	117158129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024738.1	-1	predicted	p.C131Y	1.000	104	0%	149	33.6%	34	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2054
KSR2	283455	genome.wustl.edu	37	12	117922298	117922298	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173598.4	-1	validated	p.N762	0.154	39	0%	59	39%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KSR2	283455	genome.wustl.edu	37	12	118199085	118199085	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173598.4	-1	validated	p.P210	0.953	17	0%	17	47.1%	0	-	-	-	-	NULL
SRRM4	84530	genome.wustl.edu	37	12	119554806	119554806	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194286.2	+1	validated	p.R144*	0.998	84	0%	96	30.2%	0	-	-	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120152080	120152080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007174.1	-1	validated	p.G1368R	1.000	112	0%	145	35.2%	7	0%	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
CIT	11113	genome.wustl.edu	37	12	120195310	120195310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007174.1	-1	validated	p.Q815H	1.000	299	0%	342	18.4%	7	0%	probably_damaging(0.992)	tolerated(0.05)	deleterious(0.793)	NULL
CCDC64	92558	genome.wustl.edu	37	12	120436358	120436358	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207311.2	+1	validated	p.R155*	1.000	27	0%	42	19%	13	0%	-	-	-	NULL
GCN1L1	10985	genome.wustl.edu	37	12	120621425	120621425	+	Missense_Mutation	SNP	G	G	A	rs184158504	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006836.1	-1	validated	p.R125C	0.994	34	0%	70	14.3%	12	0%	benign(0.02)	deleterious(0.05)	neutral(0.346)	superfamily_ARM repeat
GATC	283459	genome.wustl.edu	37	12	120894897	120894897	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_176818.2	+1	validated	p.S91	0.039	20	0%	28	42.9%	25	0%	-	-	-	HMMPfam_Glu-tRNAGln
RNF10	9921	genome.wustl.edu	37	12	121001654	121001654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014868.4	+1	reviewed	p.R525C	1.000	87	0%	118	23.7%	287	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CABP1	9478	genome.wustl.edu	37	12	121098077	121098077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033677.1	+1	reviewed	p.R255H	1.000	41	0%	106	25.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
HNF1A	6927	genome.wustl.edu	37	12	121426649	121426649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000545.5	+1	reviewed	p.R114C	1.000	44	0%	55	38.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains
OASL	8638	genome.wustl.edu	37	12	121458383	121458383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003733.2	-1	validated	p.A509D	0.000	153	0%	201	10.4%	3	0%	benign(0.397)	tolerated(0.07)	neutral(0.447)	NULL
KDM2B	84678	genome.wustl.edu	37	12	121880030	121880030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032590.4	-1	reviewed	p.A1072T	1.000	14	0%	23	26.1%	34	0%	probably_damaging(0.959)	tolerated(0.3)	neutral(0.431)	HMMPfam_F-box
KDM2B	84678	genome.wustl.edu	37	12	121881840	121881840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032590.4	-1	reviewed	p.P809L	1.000	75	0%	79	25.3%	42	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KDM2B	84678	genome.wustl.edu	37	12	121947605	121947605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032590.4	-1	reviewed	p.R471K	1.000	18	0%	30	16.7%	8	0%	benign(0.001)	tolerated(0.69)	neutral(0.002)	NULL
KDM2B	84678	genome.wustl.edu	37	12	121958789	121958789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032590.4	-1	reviewed	p.R349Q	1.000	9	0.000	25	0.200	13	0%	possibly_damaging(0.929)	tolerated(0.06)	deleterious(0.699)	superfamily_Clavaminate synthase-like
KDM2B	84678	genome.wustl.edu	37	12	121986816	121986816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032590.4	-1	reviewed	p.A217T	0.671	50	0%	62	12.9%	10	0%	benign(0.114)	tolerated(0.34)	neutral(0.032)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
KDM2B	84678	genome.wustl.edu	37	12	122018756	122018756	+	Missense_Mutation	SNP	C	C	T	rs186048604	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032590.4	-1	reviewed	p.A21T	0.228	86	0%	88	11.4%	0	-	benign(0.043)	tolerated(0.35)	neutral(0.023)	NULL
HPD	3242	genome.wustl.edu	37	12	122281717	122281718	+	Frame_Shift_Del	DEL	CT	CT	-	rs142252243	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002150.2	-1	reviewed	p.G285fs	1.000:0.977	-	-	-	-	-	-	-	-	-	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
WDR66	144406	genome.wustl.edu	37	12	122386896	122386896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144668.4	+1	validated	p.V400I	0.207	79	0%	109	36.7%	6	0%	benign(0.002)	tolerated(0.85)	neutral(0.001)	superfamily_WD40 repeat-like
CLIP1	6249	genome.wustl.edu	37	12	122812589	122812589	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002956.2	-1	validated	p.L1041	0.000	95	0%	129	15.5%	31	0%	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123082390	123082390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014708.4	+1	reviewed	p.R1490W	0.014	114	0%	137	12.4%	9	0%	benign(0.06)	deleterious(0.03)	neutral(0.368)	NULL
DENR	8562	genome.wustl.edu	37	12	123252140	123252140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003677.3	+1	reviewed	p.L134P	1.000	28	0%	52	32.7%	110	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SUI1,superfamily_TIF_SUI1
HIP1R	9026	genome.wustl.edu	37	12	123342953	123342953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003959.1	+1	validated	p.G674D	1.000	7	0.000	12	0.333	45	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SNRNP35	11066	genome.wustl.edu	37	12	123950705	123950705	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_180699.2	+1	reviewed	p.G211	0.967	65	0%	104	39.4%	76	0%	-	-	-	NULL
RILPL1	353116	genome.wustl.edu	37	12	123983141	123983141	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178314.3	-1	validated	p.R251*	0.982	68	0%	105	41%	17	0%	-	-	-	NULL
DDX55	57696	genome.wustl.edu	37	12	124104130	124104130	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020936.1	+1	reviewed	p.R495	1.000	166	0%	191	24.1%	27	3.7%	-	-	-	NULL
TCTN2	79867	genome.wustl.edu	37	12	124171406	124171406	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024809.3	+1	validated	p.T196	0.000	95	0%	119	28.6%	35	0%	-	-	-	HMMPfam_DUF1619
ATP6V0A2	23545	genome.wustl.edu	37	12	124210822	124210822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012463.3	+1	reviewed	p.A171T	1.000	107	0%	187	27.3%	16	0%	benign(0.424)	tolerated(0.15)	neutral(0.379)	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124330604	124330604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207437.3	+1	validated	p.C1788Y	1.000	173	0%	164	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124364299	124364299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207437.3	+1	validated	p.R2744H	0.986	311	0%	448	36.2%	0	-	probably_damaging(0.981)	tolerated(0.11)	deleterious(0.697)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124399436	124399436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207437.3	+1	validated	p.V3420I	0.944	27	0%	21	57.1%	0	-	benign(0.14)	tolerated(0.51)	neutral(0.021)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124401119	124401119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207437.3	+1	validated	p.V3495D	1.000	78	0%	55	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124416288	124416288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207437.3	+1	validated	p.R4223H	0.628	67	0%	104	16.3%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Dynein_heavy
NCOR2	9612	genome.wustl.edu	37	12	124904522	124904522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006312.3	-1	validated	p.R488Q	1.000	58	0%	47	40.4%	44	0%	unknown(0)	tolerated(0.06)	-	NULL
AACS	65985	genome.wustl.edu	37	12	125591771	125591771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023928.3	+1	validated	p.S291L	0.995	56	0%	65	41.5%	26	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like
AACS	65985	genome.wustl.edu	37	12	125591785	125591785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023928.3	+1	validated	p.A296T	0.822	51	0%	71	14.1%	19	0%	possibly_damaging(0.909)	tolerated(0.22)	neutral(0.404)	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like
TMEM132B	114795	genome.wustl.edu	37	12	126135302	126135302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052907.2	+1	provisional	p.A568T	0.996	61	0%	75	29.3%	0	-	possibly_damaging(0.854)	deleterious(0.01)	deleterious(0.735)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126135440	126135440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052907.2	+1	provisional	p.A614T	1.000	54	0%	71	28.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SLC15A4	121260	genome.wustl.edu	37	12	129293981	129293981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145648.3	-1	validated	p.R350M	0.581	106	0%	159	28.3%	36	0%	possibly_damaging(0.551)	tolerated(0.13)	neutral(0.440)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
SLC15A4	121260	genome.wustl.edu	37	12	129299466	129299466	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145648.3	-1	validated	p.C232	1.000	126	0%	190	34.7%	35	0%	-	-	-	HMMPfam_PTR2,superfamily_MFS general substrate transporter
TMEM132D	121256	genome.wustl.edu	37	12	130184367	130184367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133448.2	-1	validated	p.R319H	0.000	22	0%	35	28.6%	0	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130846070	130846070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004764.3	+1	reviewed	p.D632N	0.999	193	0%	206	33.5%	1	0%	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
RIMBP2	23504	genome.wustl.edu	37	12	130884249	130884249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015347.4	-1	validated	p.T1036M	0.019	219	0%	325	33.5%	0	-	benign(0.192)	tolerated(0.09)	neutral(0.315)	superfamily_SH3-domain
RIMBP2	23504	genome.wustl.edu	37	12	130927121	130927121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015347.4	-1	validated	p.T242M	0.237	44	0%	46	28.3%	0	-	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	superfamily_SH3-domain
ULK1	8408	genome.wustl.edu	37	12	132380233	132380233	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003565.2	+1	validated	p.L67	0.988	6	0.000	14	0.429	35	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EP400	57634	genome.wustl.edu	37	12	132527955	132527955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015409.3	+1	validated	p.P2104L	0.000	45	0%	107	13.1%	26	0%	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132537755	132537755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015409.3	+1	validated	p.A2486T	1.000	45	0%	50	36%	14	0%	unknown(0)	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133226290	133226290	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006231.2	-1	validated	p.G1256	0.791	94	0%	92	13%	22	0%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133249829	133249829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006231.2	-1	validated	p.A465V	1.000	59	0%	160	33.8%	35	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_POLBc,superfamily_RNaseH_fold
ANKLE2	23141	genome.wustl.edu	37	12	133324465	133324465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015114.1	-1	validated	p.R395C	1.000	28	0%	36	30.6%	62	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Ankyrin repeat
CHFR	55743	genome.wustl.edu	37	12	133433133	133433133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018223.2	-1	validated	p.R355W	1.000	187	0%	261	23%	50	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHFR	55743	genome.wustl.edu	37	12	133435699	133435699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018223.2	-1	validated	p.T260M	0.881	29	0%	51	15.7%	53	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_RING/U-box
ZNF268	10795	genome.wustl.edu	37	12	133768151	133768151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003415.2	+1	validated	p.C104Y	0.005	125	0%	171	28.7%	9	0%	unknown(0)	tolerated(0.08)	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC729535	729535	genome.wustl.edu	37	13	19271499	19271499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001130539.3	+1	model	p.R131W	0.169	19	0%	44	22.7%	18	0%	-	-	-	NULL
PSPC1	55269	genome.wustl.edu	37	13	20346381	20346381	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042414.1	-1	validated	e2+1	1.000	57	0%	90	28.9%	0	-	-	-	-	-
LATS2	26524	genome.wustl.edu	37	13	21619838	21619838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014572.2	-1	reviewed	p.A110T	0.979	42	0%	69	34.8%	6	0%	benign(0.108)	deleterious(0.01)	neutral(0.414)	HMMPfam_UBA
SACS	26278	genome.wustl.edu	37	13	23908270	23908270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014363.4	-1	reviewed	p.H3249Y	1.000	70	0%	118	39%	5	0%	benign(0.002)	tolerated(0.05)	neutral(0.345)	NULL
SACS	26278	genome.wustl.edu	37	13	23909043	23909043	+	Missense_Mutation	SNP	C	C	T	rs192610957	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014363.4	-1	reviewed	p.R2991H	1.000	134	0%	134	14.9%	5	0%	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	NULL
SACS	26278	genome.wustl.edu	37	13	23929248	23929248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000455470	-1	known	p.P401S	0.970	127	0%	183	18%	2	0%	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23929663	23929663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014363.4	-1	reviewed	p.T363I	0.175	120	0%	146	17.1%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
SACS	26278	genome.wustl.edu	37	13	23929833	23929833	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000455470	-1	known	p.A206T	0.999	104	0%	142	19.7%	1	0%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
C1QTNF9B	387911	genome.wustl.edu	37	13	24470993	24470993	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007537.1	-1	provisional	p.R45*	1.000	212	0%	222	20.3%	0	-	-	-	-	HMMPfam_Collagen
RNF17	56163	genome.wustl.edu	37	13	25451164	25451164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031277.2	+1	reviewed	p.R1538Q	1.000	207	0%	167	34.7%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_TUDOR,superfamily_Staphylococcal nuclease
CENPJ	55835	genome.wustl.edu	37	13	25480972	25480972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018451.3	-1	reviewed	p.T402A	0.000	145	0%	175	38.3%	13	0%	benign(0.099)	tolerated(0.16)	neutral(0.067)	NULL
CENPJ	55835	genome.wustl.edu	37	13	25484094	25484094	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018451.3	-1	reviewed	p.P233	0.004	240	0%	253	25.7%	2	0%	-	-	-	NULL
MTMR6	9107	genome.wustl.edu	37	13	25831922	25831922	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004685.3	-1	validated	p.W307*	1.000	104	0%	108	45.4%	13	0%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ATP8A2	51761	genome.wustl.edu	37	13	26535801	26535801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016529.4	+1	validated	p.A1091V	1.000	114	0%	95	18.9%	0	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26542798	26542798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016529.4	+1	validated	p.R1120W	0.613	46	0%	35	17.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SHISA2	387914	genome.wustl.edu	37	13	26621064	26621064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007538.1	-1	provisional	p.R159C	1.000	33	0%	33	27.3%	1	0%	possibly_damaging(0.868)	tolerated(0.17)	neutral(0.396)	NULL
RNF6	6049	genome.wustl.edu	37	13	26789203	26789203	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005977.3	-1	reviewed	p.G272	1.000	442	0%	311	27.3%	38	0%	-	-	-	NULL
CDK8	1024	genome.wustl.edu	37	13	26959390	26959390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001260.1	+1	reviewed	p.P186L	1.000	191	0%	243	22.6%	24	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LNX2	222484	genome.wustl.edu	37	13	28136917	28136917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153371.3	-1	validated	p.V286A	1.000	119	0%	117	29.9%	15	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PAN3	255967	genome.wustl.edu	37	13	28794431	28794431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175854.7	+1	validated	p.V106M	1.000	537	0%	567	13.4%	8	0%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
FLT1	2321	genome.wustl.edu	37	13	28903855	28903855	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002019.4	-1	reviewed	p.T868	0.112	36	0%	36	44.4%	5	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FLT1	2321	genome.wustl.edu	37	13	28964089	28964089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002019.4	-1	reviewed	p.S605G	0.815	236	0%	213	31.9%	18	0%	benign(0.283)	tolerated(0.39)	neutral(0.103)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MTUS2	23281	genome.wustl.edu	37	13	29933558	29933558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033602.2	+1	validated	p.A1032V	0.724	21	0%	19	36.8%	0	-	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	NULL
SLC7A1	6541	genome.wustl.edu	37	13	30096481	30096481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003045.4	-1	validated	p.A388T	1.000	165	0%	184	42.4%	83	0%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_AA_permease
RXFP2	122042	genome.wustl.edu	37	13	32332525	32332525	+	Silent	SNP	G	G	A	rs186433875	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130806.3	+1	reviewed	p.A75	0.244	230	0%	218	37.6%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_L domain-like
FRY	10129	genome.wustl.edu	37	13	32835787	32835787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023037.2	+1	validated	p.R2484H	1.000	66	0%	84	22.6%	5	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
BRCA2	675	genome.wustl.edu	37	13	32914550	32914550	+	Missense_Mutation	SNP	G	G	A	rs80358842		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000059.3	+1	reviewed	p.E2020K	0.000	143	0%	199	31.2%	3	0%	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	NULL
BRCA2	675	genome.wustl.edu	37	13	32914849	32914849	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000059.3	+1	reviewed	p.N2119	0.003	98	0%	144	27.1%	4	0%	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32931886	32931886	+	Missense_Mutation	SNP	C	C	T	rs80358989		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000059.3	+1	reviewed	p.T2542M	0.972	170	0%	220	12.7%	5	0%	benign(0)	tolerated(1)	-	HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical
NBEA	26960	genome.wustl.edu	37	13	35632939	35632939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015678.4	+1	validated	p.F393S	1.000	35	0%	53	30.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35733835	35733835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015678.4	+1	validated	p.V1176A	0.976	75	0%	131	32.8%	0	-	benign(0.013)	tolerated(0.76)	neutral(0.002)	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36223884	36223884	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015678.4	+1	validated	p.T2600	0.673	252	0%	266	26.3%	1	0%	-	-	-	superfamily_WD40 repeat-like
DCLK1	9201	genome.wustl.edu	37	13	36700259	36700259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004734.3	-1	validated	p.D6N	1.000	64	0%	85	32.9%	0	-	benign(0.004)	tolerated(1)	-	NULL
SOHLH2	54937	genome.wustl.edu	37	13	36743180	36743180	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017826.2	-1	validated	p.W423*	1.000	302	0%	236	24.6%	1	0%	-	-	-	NULL
SPG20	23111	genome.wustl.edu	37	13	36900723	36900723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142294.1	-1	reviewed	p.N426S	1.000	104	0%	186	35.5%	57	0%	possibly_damaging(0.452)	tolerated(0.2)	neutral(0.197)	NULL
FAM48A	55578	genome.wustl.edu	37	13	37595604	37595604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014286.2	-1	validated	p.M599I	1.000	71	0%	102	28.4%	59	0%	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
POSTN	10631	genome.wustl.edu	37	13	38164606	38164606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006475.2	-1	validated	p.R115H	0.000	69	0%	38	31.6%	2	0%	benign(0.006)	tolerated(0.5)	neutral(0.010)	HMMPfam_Fasciclin,superfamily_FAS1 domain
TRPC4	7223	genome.wustl.edu	37	13	38237649	38237649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003306.1	-1	validated	p.A531V	1.000	247	0%	264	14.4%	1	0%	benign(0.354)	tolerated(0.08)	neutral(0.412)	HMMPfam_Ion_trans
TRPC4	7223	genome.wustl.edu	37	13	38266394	38266394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003306.1	-1	validated	p.W326R	1.000	97	0%	115	36.5%	1	0%	benign(0.345)	tolerated(0.35)	neutral(0.130)	NULL
FREM2	341640	genome.wustl.edu	37	13	39454806	39454806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207361.4	+1	reviewed	p.A3131V	0.007	66	0%	58	12.1%	11	0%	benign(0)	tolerated(1)	-	NULL
PROSER1	80209	genome.wustl.edu	37	13	39587434	39587434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025138.3	-1	validated	p.L652S	0.226	308	0%	348	31%	77	0%	possibly_damaging(0.762)	tolerated(0.13)	deleterious(0.535)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42189119	42189119	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015058.1	-1	validated	p.G1571	0.067	81	0%	109	18.3%	7	0%	-	-	-	NULL
AKAP11	11215	genome.wustl.edu	37	13	42876833	42876833	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016248.2	+1	reviewed	p.P1317	0.000	139	0%	205	18%	13	0%	-	-	-	NULL
AKAP11	11215	genome.wustl.edu	37	13	42888049	42888049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016248.2	+1	reviewed	p.D1793N	1.000	221	0.5%	269	32.7%	17	0%	possibly_damaging(0.879)	tolerated(0.05)	deleterious(0.688)	NULL
TNFSF11	8600	genome.wustl.edu	37	13	43180976	43180976	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003701.3	+1	reviewed	p.E292	0.970	171	0%	188	16%	2	0%	-	-	-	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
ENOX1	55068	genome.wustl.edu	37	13	43788214	43788214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127615.1	-1	validated	p.R615H	1.000	115	0%	103	32%	2	0%	benign(0.009)	tolerated(0.53)	neutral(0.008)	NULL
SPERT	220082	genome.wustl.edu	37	13	46287720	46287720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152719.1	+1	provisional	p.R187Q	0.000	77	0%	65	13.8%	2	0%	possibly_damaging(0.559)	tolerated(0.05)	deleterious(0.536)	NULL
SIAH3	283514	genome.wustl.edu	37	13	46357763	46357763	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198849.2	-1	validated	p.L189	1.000	39	0%	52	40.4%	0	-	-	-	-	superfamily_Traf_like,HMMPfam_Sina
ZC3H13	23091	genome.wustl.edu	37	13	46542029	46542029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015070.3	-1	validated	p.R1311C	0.999	304	0%	338	31.7%	59	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46549536	46549536	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015070.3	-1	validated	p.R784*	0.998	1402	0.1%	1518	34.9%	109	0%	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46559624	46559624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015070.3	-1	validated	p.R510C	0.994	507	0%	592	15.2%	24	0%	unknown(0)	deleterious(0)	-	NULL
LCP1	3936	genome.wustl.edu	37	13	46717526	46717526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002298.4	-1	reviewed	p.A423T	1.000	85	0%	98	29.6%	13	0%	benign(0.084)	deleterious(0)	neutral(0.451)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
HTR2A	3356	genome.wustl.edu	37	13	47408981	47408981	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000621.3	-1	reviewed	p.S469	1.000	168	0%	149	27.5%	0	-	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	48919275	48919275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000321.2	+1	reviewed	p.A147V	1.000	164	0%	252	31.3%	2	0%	possibly_damaging(0.612)	tolerated(0.2)	neutral(0.261)	NULL
RB1	5925	genome.wustl.edu	37	13	49050886	49050886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000321.2	+1	reviewed	p.R857H	1.000	186	0%	152	37.5%	13	0%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Rb_C
MLNR	2862	genome.wustl.edu	37	13	49796402	49796402	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001507.1	+1	provisional	p.R376	0.000	70	0%	75	28%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ATP7B	540	genome.wustl.edu	37	13	52524504	52524504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000053.2	-1	reviewed	p.R827W	1.000	71	0%	53	26.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ALG11	440138	genome.wustl.edu	37	13	52598401	52598401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004127.1	+1	provisional	p.A179T	1.000	152	0%	207	30%	16	0%	benign(0.099)	deleterious(0.05)	neutral(0.353)	superfamily_SSF53756
UTP14C	9724	genome.wustl.edu	37	13	52604303	52604303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021645.5	+1	validated	p.L455M	0.001	355	0%	534	11%	14	0%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_Utp14
THSD1	55901	genome.wustl.edu	37	13	52951661	52951661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018676.3	-1	reviewed	p.T815M	0.577	157	0%	178	15.2%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
THSD1	55901	genome.wustl.edu	37	13	52951887	52951887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018676.3	-1	reviewed	p.L740I	0.770	295	0%	304	33.2%	0	-	benign(0.418)	tolerated(0.31)	neutral(0.163)	NULL
OLFM4	10562	genome.wustl.edu	37	13	53624337	53624337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006418.3	+1	reviewed	p.R322W	0.000	211	0%	250	30%	1	0%	probably_damaging(0.955)	deleterious(0.04)	deleterious(0.748)	HMMPfam_OLF,HMMSmart_OLF
PCDH17	27253	genome.wustl.edu	37	13	58207279	58207279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040429.2	+1	reviewed	p.A200V	0.992	34	0%	33	24.2%	0	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58209207	58209207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040429.2	+1	reviewed	p.A843T	1.000	41	0%	40	27.5%	1	0%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
LOC341689	341689	genome.wustl.edu	37	13	59104260	59104260	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_017487.3	+1	model	NULL	0.124	184	0%	230	24.8%	0	-	-	-	-	-
PCDH20	64881	genome.wustl.edu	37	13	61985417	61985417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022843.3	-1	validated	p.H939Y	0.065	192	0%	197	37.1%	1	0%	benign(0.032)	tolerated(0.31)	neutral(0.029)	NULL
PCDH20	64881	genome.wustl.edu	37	13	61987889	61987889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022843.3	-1	validated	p.P115S	0.966	34	0%	32	21.9%	0	-	probably_damaging(0.975)	tolerated(0.23)	neutral(0.458)	HMMPfam_Cadherin_2
LOC647262	647262	genome.wustl.edu	37	13	64321092	64321092	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_934622.3	+1	model	p.G53	0.718	103	0%	134	35.1%	0	-	-	-	-	NULL
LOC647264	647264	genome.wustl.edu	37	13	64406906	64406906	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_078476.1	-1	model	NULL	0.652	181	0%	243	34.2%	0	-	-	-	-	-
PCDH9	5101	genome.wustl.edu	37	13	67801779	67801779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203487.2	-1	reviewed	p.A265V	1.000	131	0%	149	36.2%	0	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_Cadherin,superfamily_Cadherin-like
KLHL1	57626	genome.wustl.edu	37	13	70514320	70514320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020866.2	-1	validated	p.A289V	1.000	61	0%	74	45.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PIBF1	10464	genome.wustl.edu	37	13	73409415	73409415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006346.2	+1	validated	p.H378Y	1.000	288	0%	334	30.2%	13	0%	possibly_damaging(0.528)	deleterious(0.04)	deleterious(0.527)	NULL
KLF5	688	genome.wustl.edu	37	13	73649880	73649880	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001730.3	+1	reviewed	p.C410	1.000	84	0%	128	11.7%	41	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LMO7	4008	genome.wustl.edu	37	13	76391343	76391343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015842.2	+1	reviewed	p.R432C	1.000	200	0%	202	30.7%	19	0%	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	NULL
LMO7	4008	genome.wustl.edu	37	13	76432071	76432071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005358.5	+1	reviewed	p.A1348T	1.000	202	0%	214	20.6%	41	0%	benign(0.019)	tolerated(0.59)	neutral(0.005)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77692506	77692506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000360084	-1	known	p.Q188H	1.000	32	0%	41	26.8%	0	-	probably_damaging(0.961)	tolerated(0.13)	deleterious(0.657)	NULL
SLAIN1	122060	genome.wustl.edu	37	13	78335194	78335194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040153.2	+1	validated	p.A308V	1.000	183	0%	206	18.4%	29	0%	possibly_damaging(0.521)	tolerated(0.07)	deleterious(0.494)	NULL
RNF219	79596	genome.wustl.edu	37	13	79189856	79189856	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024546.3	-1	validated	p.H680	0.128	214	0%	347	28.5%	29	0%	-	-	-	NULL
GPC5	2262	genome.wustl.edu	37	13	92101073	92101073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004466.4	+1	reviewed	p.E74D	1.000	247	0%	268	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glypican
GPC5	2262	genome.wustl.edu	37	13	92408599	92408599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004466.4	+1	reviewed	p.A402D	1.000	342	0%	354	31.4%	0	-	benign(0.102)	deleterious(0.05)	neutral(0.353)	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95095869	95095869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001129889.1	-1	validated	p.A434V	1.000	68	0%	65	26.2%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Di-copper_centre
ABCC4	10257	genome.wustl.edu	37	13	95768220	95768220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005845.3	-1	reviewed	p.H831Y	1.000	255	0%	225	30.7%	24	0%	benign(0.007)	tolerated(0.09)	neutral(0.296)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ENSG00000238463	0	genome.wustl.edu	37	13	95862655	95862655	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000459449	+1	novel	NULL	0.009	15	0%	21	42.9%	0	-	-	-	-	-
CLDN10	9071	genome.wustl.edu	37	13	96212418	96212418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006984.4	+1	reviewed	p.A85T	0.997	126	0%	153	29.4%	5	0%	benign(0.008)	tolerated(1)	-	HMMPfam_PMP22_Claudin
IPO5	3843	genome.wustl.edu	37	13	98654764	98654764	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000469360	+1	known	p.P386L	1.000	124	0%	160	30%	101	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
IPO5	3843	genome.wustl.edu	37	13	98655174	98655174	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000469360	+1	known	p.P462L	0.991	88	0%	147	29.3%	119	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
FARP1	10160	genome.wustl.edu	37	13	99091067	99091067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005766.2	+1	reviewed	p.R762C	1.000	58	0%	30	33.3%	181	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FARP1	10160	genome.wustl.edu	37	13	99099003	99099003	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005766.2	+1	reviewed	p.Y996	0.996	123	0%	124	27.4%	255	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
STK24	8428	genome.wustl.edu	37	13	99127579	99127579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003576.3	-1	validated	p.A134T	1.000	79	0%	55	18.2%	224	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DOCK9	23348	genome.wustl.edu	37	13	99567596	99567596	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130049.1	-1	validated	p.G294	1.000	114	0%	97	24.7%	1	0%	-	-	-	NULL
GPR183	1880	genome.wustl.edu	37	13	99947371	99947371	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004951.4	-1	reviewed	p.S343	0.820	165	0.6%	190	28.4%	6	0%	-	-	-	superfamily_SSF81321
NALCN	259232	genome.wustl.edu	37	13	102047710	102047710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052867.2	-1	validated	p.H39Y	1.000	165	0%	170	34.7%	0	-	possibly_damaging(0.838)	deleterious(0.01)	deleterious(0.726)	superfamily_Voltage-gated potassium channels
TEX30	93081	genome.wustl.edu	37	13	103421703	103421703	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138779.3	-1	validated	p.G68	1.000	99	0%	133	34.6%	18	0%	-	-	-	superfamily_SSF53474
KDELC1	79070	genome.wustl.edu	37	13	103443381	103443381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024089.2	-1	reviewed	p.E318G	1.000	45	0%	92	9.8%	25	0%	possibly_damaging(0.659)	tolerated(0.22)	neutral(0.275)	HMMSmart_CAP10,HMMPfam_DUF821
ERCC5	2073	genome.wustl.edu	37	13	103514544	103514544	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000123.2	+1	reviewed	p.Q349*	1.000	225	0%	221	38.5%	17	0%	-	-	-	superfamily_PIN domain-like
ERCC5	2073	genome.wustl.edu	37	13	103519117	103519117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000123.2	+1	reviewed	p.R819W	1.000	72	0%	45	31.1%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XPG_I,HMMSmart_SM00484,superfamily_PIN domain-like
ERCC5	2073	genome.wustl.edu	37	13	103527727	103527727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000123.2	+1	reviewed	p.S1012N	1.000	285	0%	238	11.8%	51	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LIG4	3981	genome.wustl.edu	37	13	108863357	108863357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098268.1	-1	reviewed	p.T87N	0.947	118	0%	163	35.6%	2	0%	benign(0.02)	tolerated(0.34)	neutral(0.024)	HMMPfam_DNA_ligase_A_N
MYO16	23026	genome.wustl.edu	37	13	109562353	109562353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015011.1	+1	validated	p.R572G	1.000	158	0%	177	27.7%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL4A1	1282	genome.wustl.edu	37	13	110804705	110804705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001845.4	-1	reviewed	p.T1635I	1.000	88	0%	88	30.7%	199	0%	unknown(0)	tolerated(0.97)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A1	1282	genome.wustl.edu	37	13	110804776	110804776	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001845.4	-1	reviewed	p.A1611	0.252	54	0%	57	28.1%	187	0%	-	-	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A1	1282	genome.wustl.edu	37	13	110818595	110818595	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001845.4	-1	reviewed	p.G1335	0.000	215	0%	155	34.8%	75	0%	-	-	-	HMMPfam_Collagen
ANKRD10	55608	genome.wustl.edu	37	13	111545600	111545600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017664.2	-1	validated	p.A156T	1.000	47	0%	75	33.3%	133	0%	possibly_damaging(0.757)	tolerated(0.11)	deleterious(0.551)	HMMPfam_Ank,superfamily_Ankyrin repeat
ARHGEF7	8874	genome.wustl.edu	37	13	111953840	111953840	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113513.1	+1	reviewed	p.T593	0.125	60	0%	62	29%	38	0%	-	-	-	NULL
TEX29	121793	genome.wustl.edu	37	13	111973247	111973247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152324.1	+1	predicted	p.V4M	0.002	43	0%	21	42.9%	0	-	possibly_damaging(0.688)	tolerated(0.08)	deleterious(0.546)	NULL
C13orf35	400165	genome.wustl.edu	37	13	113333805	113333805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207440.1	+1	provisional	p.A38T	0.000	19	0%	27	18.5%	0	-	benign(0.355)	-	-	NULL
MCF2L	23263	genome.wustl.edu	37	13	113739454	113739454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001112732.1	+1	validated	p.P794S	1.000	13	0%	13	30.8%	45	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1
F7	2155	genome.wustl.edu	37	13	113772779	113772779	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000131.3	+1	reviewed	p.A286	0.000	9	0.000	9	0.556	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CUL4A	8451	genome.wustl.edu	37	13	113909104	113909104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008895.1	+1	validated	p.T617M	1.000	161	0%	226	32.7%	82	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cullin,superfamily_Cullin homology domain
GRTP1	79774	genome.wustl.edu	37	13	113978841	113978841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024719.2	-1	validated	p.R325C	0.888	15	0%	10	40%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCUN1D2	55208	genome.wustl.edu	37	13	114134962	114134962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014283.1	-1	validated	p.A106V	0.998	122	0%	241	29.5%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCUN1D2	55208	genome.wustl.edu	37	13	114138211	114138211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014283.1	-1	validated	p.S55F	0.998	92	0%	185	29.2%	7	0%	possibly_damaging(0.757)	deleterious(0.02)	deleterious(0.663)	NULL
ATP4B	496	genome.wustl.edu	37	13	114306016	114306016	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000705.3	-1	reviewed	p.G194	0.025	19	0%	22	31.8%	0	-	-	-	-	HMMPfam_Na_K-ATPase
RASA3	22821	genome.wustl.edu	37	13	114762187	114762187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007368.2	-1	reviewed	p.A654V	0.758	14	0%	16	43.8%	1	0%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CCNB1IP1	57820	genome.wustl.edu	37	14	20781947	20781947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021178.3	-1	validated	p.R104H	0.996	39	0%	57	31.6%	276	0.3%	benign(0.017)	tolerated(0.41)	neutral(0.015)	NULL
PARP2	10038	genome.wustl.edu	37	14	20824158	20824158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005484.3	+1	reviewed	p.R370C	0.852	314	0%	498	41.2%	57	0%	probably_damaging(0.973)	tolerated(0.05)	deleterious(0.760)	HMMPfam_PARP,superfamily_ADP-ribosylation
TEP1	7011	genome.wustl.edu	37	14	20853239	20853239	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007110.4	-1	reviewed	p.V1004	1.000	70	0%	59	15.3%	2	0%	-	-	-	NULL
RNASE10	338879	genome.wustl.edu	37	14	20979242	20979242	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012975.1	+1	provisional	p.T204	0.158	66	0%	103	31.1%	0	-	-	-	-	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
ARHGEF40	55701	genome.wustl.edu	37	14	21549146	21549146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018071.3	+1	validated	p.A871T	1.000	48	0%	102	14.7%	2	0%	possibly_damaging(0.837)	tolerated(0.57)	neutral(0.326)	NULL
HNRNPC	3183	genome.wustl.edu	37	14	21681256	21681256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077442.1	-1	reviewed	p.R142H	1.000	258	0%	235	29.4%	1082	0%	benign(0.402)	tolerated(0.05)	deleterious(0.474)	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21794290	21794290	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020366.3	+1	reviewed	p.R890*	0.265	39	0%	51	35.3%	0	-	-	-	-	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SUPT16H	11198	genome.wustl.edu	37	14	21820958	21820958	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007192.3	-1	reviewed	p.Y1006	0.906	264	0%	347	32%	282	0%	-	-	-	NULL
CHD8	57680	genome.wustl.edu	37	14	21859748	21859748	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020920.3	-1	reviewed	p.T2034	1.000	115	0%	96	22.9%	121	0%	-	-	-	HMMPfam_BRK,HMMSmart_SM00592
CHD8	57680	genome.wustl.edu	37	14	21875095	21875095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020920.3	-1	reviewed	p.R664C	1.000	45	0%	54	13%	21	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21896037	21896037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020920.3	-1	reviewed	p.S252N	1.000	126	0%	178	15.2%	26	0%	benign(0.007)	deleterious(0.04)	neutral(0.349)	NULL
LOC100288791	100288791	genome.wustl.edu	37	14	23313539	23313539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343265.1	-1	model	p.R109W	0.000	99	0%	83	22.9%	2	0%	-	-	-	NULL
REM2	161253	genome.wustl.edu	37	14	23354492	23354492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173527.2	+1	validated	p.R155C	0.985	88	0%	137	26.3%	3	0%	possibly_damaging(0.93)	deleterious(0.04)	deleterious(0.726)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACIN1	22985	genome.wustl.edu	37	14	23528629	23528629	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014977.3	-1	validated	p.R1252*	0.999	55	0%	96	29.2%	204	0%	-	-	-	NULL
CEBPE	1053	genome.wustl.edu	37	14	23586846	23586846	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001805.2	-1	reviewed	p.T232	0.681	55	0%	64	28.1%	0	-	-	-	-	HMMSmart_BRLZ,HMMPfam_bZIP_2
EFS	10278	genome.wustl.edu	37	14	23829010	23829010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005864.2	-1	reviewed	p.A226V	0.981	36	0%	42	21.4%	3	0%	probably_damaging(0.998)	tolerated(0.37)	deleterious(0.493)	NULL
MYH6	4624	genome.wustl.edu	37	14	23866210	23866210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002471.3	-1	validated	p.G710	1.000	46	0%	61	16.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH6	4624	genome.wustl.edu	37	14	23869483	23869483	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002471.3	-1	validated	p.C521	1.000	45	0%	65	15.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23894613	23894613	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000257.2	-1	reviewed	p.A767	0.002	46	0%	46	28.3%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC16B	90668	genome.wustl.edu	37	14	24530800	24530800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138360.3	+1	validated	p.A800V	0.998	18	0%	26	42.3%	1	0%	unknown(0)	tolerated(0.13)	-	NULL
RNF31	55072	genome.wustl.edu	37	14	24624467	24624467	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017999.4	+1	validated	p.C744	1.000	58	0%	59	33.9%	44	0%	-	-	-	superfamily_RING/U-box
TM9SF1	10548	genome.wustl.edu	37	14	24664009	24664009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006405.5	-1	validated	p.R73C	0.597	615	0%	790	15.2%	78	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_EMP70
TSSK4	283629	genome.wustl.edu	37	14	24677206	24677206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174944.3	+1	reviewed	p.R281C	1.000	142	0%	200	34%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TINF2	26277	genome.wustl.edu	37	14	24709719	24709719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099274.1	-1	reviewed	p.A323T	0.015	110	0%	156	36.5%	79	0%	benign(0.316)	tolerated(0.3)	neutral(0.128)	NULL
RIPK3	11035	genome.wustl.edu	37	14	24805599	24805599	+	Nonsense_Mutation	SNP	G	G	A	rs186368014	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006871.3	-1	reviewed	p.R447*	0.018	47	0%	61	32.8%	6	0%	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24877970	24877970	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025081.2	+1	validated	p.Q324*	0.109	14	0%	49	24.5%	31	0%	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24884194	24884194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025081.2	+1	validated	p.A1080V	0.778	79	0%	98	36.7%	52	0%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	superfamily_DNA/RNA polymerases
KHNYN	23351	genome.wustl.edu	37	14	24906429	24906429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015299.2	+1	validated	p.R659W	1.000	108	0%	140	22.9%	34	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDR39U1	56948	genome.wustl.edu	37	14	24909671	24909671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020195.2	-1	validated	p.A167V	1.000	20	0%	28	35.7%	118	0%	possibly_damaging(0.945)	tolerated(0.24)	neutral(0.427)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
STXBP6	29091	genome.wustl.edu	37	14	25326244	25326244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014178.6	-1	provisional	p.D92N	0.997	264	0%	266	24.4%	141	0%	benign(0.082)	tolerated(0.2)	neutral(0.055)	NULL
PRKD1	5587	genome.wustl.edu	37	14	30103628	30103628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002742.2	-1	validated	p.T437M	0.996	244	0%	312	31.7%	13	0%	possibly_damaging(0.66)	tolerated(0.08)	deleterious(0.533)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
G2E3	55632	genome.wustl.edu	37	14	31081550	31081550	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017769.3	+1	validated	p.Y546	0.994	188	0%	244	38.9%	22	0%	-	-	-	HMMPfam_HECT,superfamily_HECT
COCH	1690	genome.wustl.edu	37	14	31354723	31354723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135058.1	+1	reviewed	p.G286V	1.000	123	0%	92	37%	65	0%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
STRN3	29966	genome.wustl.edu	37	14	31382851	31382851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083893.1	-1	validated	p.T418M	1.000	306	0%	299	36.8%	48	0%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
NUBPL	80224	genome.wustl.edu	37	14	32295846	32295846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025152.2	+1	validated	p.V207I	1.000	115	0%	133	24.8%	20	0%	benign(0.204)	deleterious(0.03)	neutral(0.384)	HMMPfam_ParA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP5	394	genome.wustl.edu	37	14	32560487	32560487	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001030055.1	+1	reviewed	p.C204	1.000	185	0%	331	31.7%	13	0%	-	-	-	HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP6	9472	genome.wustl.edu	37	14	33015557	33015557	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004274.4	+1	reviewed	p.L566	0.007	231	0%	232	30.2%	1	0%	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33292813	33292813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004274.4	+1	reviewed	p.H1932Y	0.005	225	0%	250	30.8%	1	0%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
MIPOL1	145282	genome.wustl.edu	37	14	37754606	37754606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138731.5	+1	validated	p.D193Y	1.000	290	0%	340	27.1%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FOXA1	3169	genome.wustl.edu	37	14	38061351	38061351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004496.2	-1	reviewed	p.R213H	1.000	16	0%	13	30.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
TTC6	319089	genome.wustl.edu	37	14	38273951	38273951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343299.1	+1	model	p.T1191A	0.000	575	0%	566	29.3%	0	-	benign(0.005)	tolerated(0.31)	neutral(0.027)	superfamily_TPR-like
TTC6	319089	genome.wustl.edu	37	14	38281631	38281631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343299.1	+1	model	p.A1289V	1.000	195	0%	226	19.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
GEMIN2	8487	genome.wustl.edu	37	14	39584095	39584095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003616.2	+1	reviewed	p.R78M	1.000	60	0%	79	29.1%	39	0%	possibly_damaging(0.871)	deleterious(0.04)	deleterious(0.688)	HMMPfam_SIP1
PNN	5411	genome.wustl.edu	37	14	39650700	39650700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002687.3	+1	validated	p.S596F	1.000	68	0%	132	37.1%	228	0%	unknown(0)	deleterious(0)	-	NULL
FANCM	57697	genome.wustl.edu	37	14	45645467	45645467	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020937.2	+1	reviewed	p.T1170	0.000	162	0.6%	203	25.1%	2	0%	-	-	-	NULL
MIS18BP1	55320	genome.wustl.edu	37	14	45679644	45679644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018353.4	-1	validated	p.P1031S	0.884	145	0%	180	25%	34	0%	probably_damaging(0.995)	tolerated(0.42)	deleterious(0.472)	NULL
ATL1	51062	genome.wustl.edu	37	14	51089901	51089901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015915.4	+1	reviewed	p.A352T	1.000	102	0%	110	17.3%	13	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
NIN	51199	genome.wustl.edu	37	14	51210171	51210171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020921.3	-1	reviewed	p.A1755V	0.753	104	0%	86	12.8%	11	0%	benign(0.394)	tolerated(0.28)	neutral(0.158)	NULL
PTGDR	5729	genome.wustl.edu	37	14	52741530	52741530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000953.2	+1	reviewed	p.R310*	0.980	120	0%	140	25.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PSMC6	5706	genome.wustl.edu	37	14	53180638	53180638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002806.3	+1	reviewed	p.R175C	1.000	75	0%	154	19.5%	56	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SAMD4A	23034	genome.wustl.edu	37	14	55168872	55168872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015589.4	+1	validated	p.A96T	1.000	88	0%	114	38.6%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
SOCS4	122809	genome.wustl.edu	37	14	55510208	55510208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080867.2	+1	reviewed	p.H150R	1.000	146	0%	243	26.7%	13	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MAPK1IP1L	93487	genome.wustl.edu	37	14	55529950	55529950	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144578.3	+1	validated	p.S211	0.989	78	0%	97	22.7%	154	0%	-	-	-	NULL
PELI2	57161	genome.wustl.edu	37	14	56763732	56763732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021255.2	+1	validated	p.H371Y	1.000	224	0%	162	11.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
EXOC5	10640	genome.wustl.edu	37	14	57686114	57686114	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006544.3	-1	reviewed	p.D484	1.000	43	0%	77	16.9%	19	0%	-	-	-	HMMPfam_Sec10
SLC35F4	341880	genome.wustl.edu	37	14	58055952	58055952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080455.1	-1	provisional	p.S226F	1.000	169	0%	171	29.8%	0	-	benign(0.177)	deleterious(0.03)	neutral(0.381)	NULL
ACTR10	55860	genome.wustl.edu	37	14	58678014	58678014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018477.2	+1	validated	p.P116Q	1.000	166	0%	212	10.8%	47	0%	possibly_damaging(0.793)	tolerated(0.07)	deleterious(0.617)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
PSMA3	5684	genome.wustl.edu	37	14	58727703	58727703	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002788.2	+1	reviewed	p.Q148*	1.000	347	0%	369	33.9%	493	0%	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ARID4A	5926	genome.wustl.edu	37	14	58831664	58831664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002892.3	+1	reviewed	p.G953R	1.000	151	0%	258	29.1%	16	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DAAM1	23002	genome.wustl.edu	37	14	59791078	59791078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014992.1	+1	reviewed	p.D299Y	1.000	200	0%	213	25.8%	14	0%	unknown(0)	deleterious(0)	-	HMMPfam_Drf_FH3
DAAM1	23002	genome.wustl.edu	37	14	59814308	59814308	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014992.1	+1	reviewed	p.E719	0.999	108	0%	166	30.7%	25	0%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
DAAM1	23002	genome.wustl.edu	37	14	59830501	59830501	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014992.1	+1	reviewed	e23+1	1.000	262	0%	264	30.3%	0	-	-	-	-	-
GPR135	64582	genome.wustl.edu	37	14	59930992	59930992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022571.5	-1	validated	p.A318V	1.000	10	0.000	9	0.444	0	-	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	HMMPfam_7tm_1,superfamily_SSF81321
JKAMP	51528	genome.wustl.edu	37	14	59965469	59965469	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016475.3	+1	validated	p.Y161	0.983	60	0%	70	24.3%	62	0%	possibly_damaging(0.804)	deleterious(0.01)	deleterious(0.708)	HMMPfam_DUF766
PPM1A	5494	genome.wustl.edu	37	14	60756542	60756542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177952.2	+1	reviewed	p.G397E	1.000	86	1.2%	113	32.7%	84	0%	benign(0.011)	tolerated(1)	neutral(0.001)	HMMPfam_PP2C_C,superfamily_Protein serine/threonine phosphatase 2C C-terminal domain
TRMT5	57570	genome.wustl.edu	37	14	61446270	61446270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020810.2	-1	validated	p.A116T	0.001	276	0.4%	355	29.3%	22	0%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63246448	63246448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139318.3	-1	reviewed	p.R673W	0.976	221	0%	228	28.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63447745	63447745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139318.3	-1	reviewed	p.V263I	1.000	255	0%	210	35.2%	0	-	possibly_damaging(0.917)	tolerated(0.35)	neutral(0.389)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH5	27133	genome.wustl.edu	37	14	63473112	63473112	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139318.3	-1	reviewed	p.C92	0.998	100	0%	122	36.9%	0	-	-	-	-	HMMSmart_SM00086,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
PPP2R5E	5529	genome.wustl.edu	37	14	64006314	64006314	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006246.2	-1	reviewed	p.S30	0.490	64	0%	104	31.7%	31	0%	-	-	-	NULL
WDR89	112840	genome.wustl.edu	37	14	64066083	64066083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008726.1	-1	validated	p.G193D	1.000	186	0%	271	29.9%	18	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SYNE2	23224	genome.wustl.edu	37	14	64469537	64469537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182914.2	+1	reviewed	p.A1296T	0.020	198	0%	250	28.4%	6	0%	possibly_damaging(0.8)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64497996	64497996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182914.2	+1	reviewed	p.Q2381R	0.003	84	0%	124	35.5%	6	0%	possibly_damaging(0.84)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64529509	64529509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182914.2	+1	reviewed	p.D3370Y	0.128	43	0%	63	34.9%	7	0%	probably_damaging(0.962)	-	-	superfamily_4_helix_cytokine
SYNE2	23224	genome.wustl.edu	37	14	64542723	64542723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182914.2	+1	reviewed	p.R3643*	0.995	93	0%	109	11%	5	0%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64676157	64676157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182914.2	+1	reviewed	p.T6134M	1.000	54	0%	66	24.2%	64	0%	unknown(0)	-	-	superfamily_Spectrin
ZBTB1	22890	genome.wustl.edu	37	14	64988520	64988520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001123329.1	+1	validated	p.A100T	1.000	98	0%	131	28.2%	25	0%	possibly_damaging(0.896)	tolerated(0.09)	deleterious(0.650)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
LOC100287214	100287214	genome.wustl.edu	37	14	65008293	65008293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343281.1	-1	model	p.A301T	1.000	19	5.3%	29	24.1%	16	0%	-	-	-	HMMPfam_NAD-GH
PLEKHG3	26030	genome.wustl.edu	37	14	65207828	65207828	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015549.1	+1	validated	p.T475	0.850	18	0%	22	22.7%	61	0%	-	-	-	NULL
RAB15	376267	genome.wustl.edu	37	14	65419255	65419255	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198686.2	-1	validated	p.D53	0.996	90	0%	106	34.9%	5	0%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ACTN1	87	genome.wustl.edu	37	14	69360390	69360390	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130004.1	-1	reviewed	p.Y279	0.970	34	0%	40	30%	147	0%	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin
DCAF5	8816	genome.wustl.edu	37	14	69521835	69521835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003861.2	-1	validated	p.R523H	1.000	60	0%	52	23.1%	25	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DCAF5	8816	genome.wustl.edu	37	14	69521877	69521877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003861.2	-1	validated	p.R509H	0.998	55	0%	36	11.1%	22	0%	benign(0.031)	tolerated(0.37)	neutral(0.021)	NULL
DCAF5	8816	genome.wustl.edu	37	14	69521897	69521897	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003861.2	-1	validated	p.T502	0.011	55	0%	37	40.5%	27	0%	-	-	-	NULL
DCAF5	8816	genome.wustl.edu	37	14	69522122	69522122	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003861.2	-1	validated	p.I427	0.873	105	0%	125	35.2%	50	0%	-	-	-	NULL
DCAF5	8816	genome.wustl.edu	37	14	69584934	69584934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003861.2	-1	validated	p.V153M	1.000	124	0%	171	11.1%	33	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GALNTL1	57452	genome.wustl.edu	37	14	69813894	69813894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020692.2	+1	validated	p.A470V	0.985	80	0%	93	41.9%	1	0%	benign(0.086)	deleterious(0.03)	neutral(0.371)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
ENSG00000235812	0	genome.wustl.edu	37	14	70712733	70712733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000433248	-1	known	p.T379P	0.000	173	0%	301	23.3%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM21	8747	genome.wustl.edu	37	14	70925253	70925253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003813.2	+1	reviewed	p.T346M	0.222	187	0%	277	30%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	"HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,superfamily_Metalloproteases (""zincins"") catalytic domain"
MAP3K9	4293	genome.wustl.edu	37	14	71209301	71209301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033141.2	-1	validated	p.R445H	1.000	64	0%	52	21.2%	6	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
PCNX	22990	genome.wustl.edu	37	14	71540387	71540387	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014982.2	+1	validated	p.R1660*	1.000	371	0%	369	14.6%	24	0%	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71543062	71543062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014982.2	+1	validated	p.A1755T	0.988	227	0%	218	32.1%	23	0%	benign(0.382)	tolerated(0.1)	neutral(0.408)	NULL
PCNX	22990	genome.wustl.edu	37	14	71570122	71570122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014982.2	+1	validated	p.E1944G	1.000	171	0%	160	28.7%	33	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pecanex_C
SIPA1L1	26037	genome.wustl.edu	37	14	72152333	72152333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015556.1	+1	provisional	p.R1120H	1.000	166	0%	216	33.3%	36	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72200496	72200496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015556.1	+1	provisional	p.S1680P	1.000	52	0%	47	31.9%	65	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
DPF3	8110	genome.wustl.edu	37	14	73137952	73137952	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012074.3	-1	provisional	p.T322	1.000	59	0%	102	30.4%	0	-	-	-	-	NULL
RBM25	58517	genome.wustl.edu	37	14	73538375	73538375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021239.2	+1	validated	p.R9H	1.000	105	0%	136	29.4%	40	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PAPLN	89932	genome.wustl.edu	37	14	73721254	73721254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173462.3	+1	validated	p.R419W	0.462	129	0%	108	13.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
C14orf43	91748	genome.wustl.edu	37	14	74205422	74205422	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001043318.1	-1	validated	p.S430	0.000	28	0%	26	34.6%	5	0%	-	-	-	NULL
ZNF410	57862	genome.wustl.edu	37	14	74371685	74371685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021188.1	+1	provisional	p.R271K	1.000	114	0%	159	27%	51	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
YLPM1	56252	genome.wustl.edu	37	14	75248324	75248324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019589.2	+1	validated	p.M526I	1.000	516	0%	535	31.6%	21	0%	unknown(0)	tolerated(0.05)	-	NULL
TTLL5	23093	genome.wustl.edu	37	14	76238091	76238091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015072.4	+1	reviewed	p.R677Q	0.998	511	0%	683	33.5%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TGFB3	7043	genome.wustl.edu	37	14	76437517	76437517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003239.2	-1	reviewed	p.L200M	1.000	93	0%	122	36.9%	11	0%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_TGFb_propeptide
IFT43	112752	genome.wustl.edu	37	14	76542940	76542940	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052873.2	+1	validated	p.N72	0.000	63	0%	73	13.7%	1	0%	-	-	-	NULL
ESRRB	2103	genome.wustl.edu	37	14	76905998	76905998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004452.3	+1	reviewed	p.R101H	1.000	43	0%	38	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_SSF57716
VASH1	22846	genome.wustl.edu	37	14	77242371	77242371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014909.4	+1	validated	p.R223C	1.000	5	0.000	9	0.667	6	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
ANGEL1	23357	genome.wustl.edu	37	14	77275424	77275424	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015305.3	-1	validated	p.A210fs	0.969	-	-	-	-	-	-	-	-	-	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77327104	77327104	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194287.2	+1	validated	p.D391	0.083	45	0%	61	36.1%	0	-	-	-	-	superfamily_RNI-like
POMT2	29954	genome.wustl.edu	37	14	77765100	77765100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013382.5	-1	reviewed	p.G313D	1.000	26	0%	32	31.2%	11	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NOXRED1	122945	genome.wustl.edu	37	14	77872417	77872417	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113475.1	-1	validated	p.C248	0.972	70	0%	115	26.1%	0	-	-	-	-	NULL
C14orf133	63894	genome.wustl.edu	37	14	77919686	77919686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022067.2	-1	provisional	p.D51G	1.000	265	0%	418	15.3%	30	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Golgin_A5
ISM2	145501	genome.wustl.edu	37	14	77948714	77948714	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199296.2	-1	reviewed	p.Q308	0.748	47	0%	49	28.6%	0	-	-	-	-	NULL
SPTLC2	9517	genome.wustl.edu	37	14	77984470	77984470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004863.2	-1	validated	p.V494I	1.000	141	0.7%	213	31.9%	44	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
NRXN3	9369	genome.wustl.edu	37	14	79181294	79181294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004796.4	+1	reviewed	p.R246H	1.000	84	0%	64	35.9%	0	-	possibly_damaging(0.939)	tolerated(0.11)	deleterious(0.656)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN3	9369	genome.wustl.edu	37	14	79933574	79933574	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004796.4	+1	reviewed	p.T718	0.057	77	0%	70	11.4%	14	0%	-	-	-	superfamily_ConA_like_lec_gl
NRXN3	9369	genome.wustl.edu	37	14	80130243	80130243	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004796.4	+1	reviewed	p.N816	1.000	71	0%	118	33.1%	8	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN3	9369	genome.wustl.edu	37	14	80158560	80158560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105250.1	+1	reviewed	p.P216S	1.000	103	0%	105	23.8%	0	-	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
TSHR	7253	genome.wustl.edu	37	14	81558918	81558918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000369.2	+1	reviewed	p.A171T	1.000	200	0%	206	28.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_L domain-like
TSHR	7253	genome.wustl.edu	37	14	81610283	81610284	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000369.2	+1	reviewed	p.L629fs	0.894:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STON2	85439	genome.wustl.edu	37	14	81736986	81736986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033104.2	-1	provisional	p.L881F	0.000	101	0%	178	33.7%	0	-	unknown(0)	tolerated(0.27)	-	NULL
STON2	85439	genome.wustl.edu	37	14	81744633	81744633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033104.2	-1	provisional	p.R341H	0.997	99	0%	107	38.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPN21	11099	genome.wustl.edu	37	14	88938602	88938602	+	Missense_Mutation	SNP	C	C	T	rs112928496		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007039.3	-1	reviewed	p.A953T	1.000	33	0%	65	40%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
EML5	161436	genome.wustl.edu	37	14	89148262	89148262	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183387.2	-1	validated	p.C1032	1.000	192	0%	210	28.6%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like
EML5	161436	genome.wustl.edu	37	14	89160660	89160660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_183387.2	-1	validated	p.R844C	1.000	26	0%	32	37.5%	0	-	possibly_damaging(0.732)	deleterious(0.03)	deleterious(0.632)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
RPS6KA5	9252	genome.wustl.edu	37	14	91338531	91338531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004755.2	-1	validated	p.S766P	0.998	125	0%	123	26%	10	0%	possibly_damaging(0.839)	tolerated(0.13)	deleterious(0.573)	NULL
RPS6KA5	9252	genome.wustl.edu	37	14	91341604	91341604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004755.2	-1	validated	p.F646fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C14orf159	80017	genome.wustl.edu	37	14	91647566	91647566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102368.1	+1	validated	p.T256I	0.000	35	0%	43	32.6%	23	0%	possibly_damaging(0.506)	deleterious(0.01)	deleterious(0.575)	HMMPfam_DUF1445
SMEK1	55671	genome.wustl.edu	37	14	91928516	91928516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032560.4	-1	validated	p.M668L	1.000	156	0%	174	16.1%	81	0%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
CATSPERB	79820	genome.wustl.edu	37	14	92174519	92174522	+	Frame_Shift_Del	DEL	ATAA	ATAA	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	ATAA	ATAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024764.2	-1	validated	p.I143fs	0.992:0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GOLGA5	9950	genome.wustl.edu	37	14	93303795	93303795	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005113.2	+1	reviewed	e11+1	1.000	498	0%	450	18%	0	-	-	-	-	-
C14orf109	26175	genome.wustl.edu	37	14	93652996	93652996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098621.1	+1	predicted	p.L164V	0.993	55	0%	132	28.8%	87	0%	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	NULL
UNC79	57578	genome.wustl.edu	37	14	94038291	94038291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020818.3	+1	validated	p.G426C	1.000	162	0%	146	17.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM181A	90050	genome.wustl.edu	37	14	94391621	94391621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138344.3	+1	predicted	p.P2S	0.003	20	0%	13	30.8%	2	0%	possibly_damaging(0.863)	-	-	NULL
DDX24	57062	genome.wustl.edu	37	14	94519464	94519464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020414.3	-1	reviewed	p.R730C	0.995	139	0%	130	24.6%	205	0%	possibly_damaging(0.936)	deleterious(0.04)	deleterious(0.730)	superfamily_SSF52540
SERPINA6	866	genome.wustl.edu	37	14	94780973	94780973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001756.3	-1	reviewed	p.L5M	0.001	95	0%	144	27.1%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	superfamily_Serpins
DICER1	23405	genome.wustl.edu	37	14	95572387	95572387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030621.3	-1	reviewed	p.T993I	1.000	252	0%	263	26.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAZ,superfamily_SSF101690
DICER1	23405	genome.wustl.edu	37	14	95577780	95577780	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030621.3	-1	reviewed	p.D710	1.000	285	0%	347	33.7%	4	0%	-	-	-	HMMPfam_dsRNA_bind
CLMN	79789	genome.wustl.edu	37	14	95670573	95670573	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024734.3	-1	validated	p.A371	0.000	128	0%	153	14.4%	4	0%	-	-	-	NULL
C14orf49	161176	genome.wustl.edu	37	14	95905953	95905953	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152592.3	-1	validated	p.L748	0.962	65	0%	59	27.1%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SETD3	84193	genome.wustl.edu	37	14	99865356	99865356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032233.2	-1	validated	p.A482V	0.997	225	0%	232	13.4%	85	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_RuBisCo LSMT C-terminal substrate-binding domain
SETD3	84193	genome.wustl.edu	37	14	99879295	99879295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032233.2	-1	validated	p.N281S	0.823	122	0%	124	36.3%	64	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_SET,superfamily_SET domain
WDR25	79446	genome.wustl.edu	37	14	100847362	100847362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024515.4	+1	validated	p.G34D	0.003	45	0%	50	20%	13	0%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
WDR25	79446	genome.wustl.edu	37	14	100992294	100992294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024515.4	+1	validated	p.A397T	0.588	54	0%	38	15.8%	22	0%	benign(0.053)	tolerated(0.07)	neutral(0.323)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MIR494	574452	genome.wustl.edu	37	14	101495992	101495992	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000349529	+1	known	NULL	1.000	23	0%	40	25%	0	-	-	-	-	-
MIR494	574452	genome.wustl.edu	37	14	101495994	101495994	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000349529	+1	known	NULL	0.997	23	0%	40	45%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102449830	102449830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001376.4	+1	reviewed	p.V449M	1.000	95	0%	110	14.5%	24	0%	benign(0.024)	tolerated(0.11)	neutral(0.273)	HMMPfam_DHC_N1
HSP90AA1	3320	genome.wustl.edu	37	14	102548739	102548739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017963.2	-1	validated	p.V722I	1.000	61	0%	129	33.3%	1516	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
CINP	51550	genome.wustl.edu	37	14	102815043	102815043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032630.2	-1	reviewed	p.R164C	0.997	17	0%	38	31.6%	123	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102912270	102912270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014844.3	+1	validated	p.D1021N	0.994	92	0%	94	28.7%	10	0%	benign(0.338)	tolerated(0.13)	neutral(0.359)	HMMPfam_Hyd_WA
RCOR1	23186	genome.wustl.edu	37	14	103180893	103180893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015156.2	+1	validated	p.A328V	1.000	141	0%	183	29%	34	0%	possibly_damaging(0.792)	tolerated(0.27)	neutral(0.331)	NULL
RCOR1	23186	genome.wustl.edu	37	14	103192827	103192827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015156.2	+1	validated	p.Y478C	0.978	35	0%	66	27.3%	42	0%	possibly_damaging(0.861)	deleterious(0.02)	deleterious(0.716)	NULL
TRAF3	7187	genome.wustl.edu	37	14	103369743	103369743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003300.2	+1	reviewed	p.A371V	0.098	27	0%	23	43.5%	27	0%	benign(0.108)	tolerated(0.22)	neutral(0.051)	NULL
INF2	64423	genome.wustl.edu	37	14	105169761	105169761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022489.3	+1	validated	p.A213T	0.465	13	0%	14	28.6%	19	0%	benign(0.003)	tolerated(0.75)	neutral(0.002)	HMMPfam_Drf_FH3
AHNAK2	113146	genome.wustl.edu	37	14	105411531	105411531	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138420.2	-1	validated	p.D3419	0.046	109	0%	91	27.5%	0	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105416166	105416166	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138420.2	-1	validated	p.P1874	0.000	59	0%	50	34%	1	0%	-	-	-	NULL
IGHG4	3503	genome.wustl.edu	37	14	106091318	106091318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390543	-1	known	p.D192E	1.000	817	0%	848	19.2%	229	0%	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_C1-set,superfamily_SSF48726
IGHV3-48	28424	genome.wustl.edu	37	14	106993854	106993854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390624	-1	known	p.S104N	0.468	838	0%	895	26.5%	46	0%	benign(0.033)	tolerated(0.18)	neutral(0.058)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-49	28423	genome.wustl.edu	37	14	107012958	107012958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390625	-1	known	p.A113T	1.000	292	0%	310	26.5%	0	-	possibly_damaging(0.79)	deleterious(0.01)	deleterious(0.702)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-49	28423	genome.wustl.edu	37	14	107013051	107013051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390625	-1	known	p.A82T	0.000	291	0%	326	12.9%	14	0%	benign(0.007)	tolerated(0.1)	neutral(0.286)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
TUBGCP5	114791	genome.wustl.edu	37	15	22867621	22867621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102610.1	+1	validated	p.N899K	1.000	66	0%	72	26.4%	37	0%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_Spc97_Spc98
CYFIP1	23191	genome.wustl.edu	37	15	22947032	22947032	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014608.2	+1	validated	p.Y435	0.106	158	0%	158	32.3%	50	0%	-	-	-	HMMPfam_FragX_IP
NIPA2	81614	genome.wustl.edu	37	15	23006810	23006810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008860.2	-1	reviewed	p.L165S	0.961	100	0%	143	12.6%	145	0%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMPfam_DUF803
UBE3A	7337	genome.wustl.edu	37	15	25615831	25615831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000462.2	-1	reviewed	p.R500H	1.000	150	0%	188	12.8%	30	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
UBE3A	7337	genome.wustl.edu	37	15	25620853	25620853	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000462.2	-1	reviewed	p.G43	1.000	100	0%	99	29.3%	21	0%	-	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25924499	25924499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024490.3	-1	reviewed	p.R1497W	0.034	88	0%	50	16%	0	-	unknown(0)	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25959218	25959218	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024490.3	-1	reviewed	p.G649	1.000	30	0%	28	32.1%	0	-	-	-	-	superfamily_SSF56784
ATP10A	57194	genome.wustl.edu	37	15	25969162	25969162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024490.3	-1	reviewed	p.G329V	1.000	234	0%	263	13.7%	0	-	benign(0.029)	tolerated(0.08)	neutral(0.301)	HMMPfam_E1-E2_ATPase
ATP10A	57194	genome.wustl.edu	37	15	25972356	25972356	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024490.3	-1	reviewed	p.G266	0.982	116	0%	102	31.4%	1	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
GABRB3	2562	genome.wustl.edu	37	15	26825468	26825468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000814.4	-1	reviewed	p.T227R	1.000	160	0%	157	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRB3	2562	genome.wustl.edu	37	15	26825600	26825600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000814.4	-1	reviewed	p.G183D	1.000	172	0%	177	33.9%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRG3	2567	genome.wustl.edu	37	15	27572002	27572002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033223.4	+1	validated	p.R106H	1.000	216	0%	152	15.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HERC2	8924	genome.wustl.edu	37	15	28370199	28370199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004667.4	-1	reviewed	p.A4315T	0.995	75	0%	75	30.7%	26	0%	benign(0.394)	deleterious(0.01)	deleterious(0.532)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28459875	28459875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004667.4	-1	reviewed	p.C2095Y	1.000	106	0%	102	23.5%	3	0%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
HERC2	8924	genome.wustl.edu	37	15	28502228	28502228	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004667.4	-1	reviewed	p.T832	0.230	85	0%	94	21.3%	6	0%	-	-	-	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28901134	28901134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000383034	+1	known	p.R129W	1.000	161	0%	189	23.8%	27	0%	-	-	-	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28912573	28912573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000383034	+1	known	p.L361F	0.999	80	0%	72	22.2%	16	0%	-	-	-	NULL
APBA2	321	genome.wustl.edu	37	15	29346706	29346706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005503.3	+1	reviewed	p.A207T	0.002	32	0%	47	38.3%	31	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
ENSG00000103832	0	genome.wustl.edu	37	15	31093597	31093597	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000220188	+1	known	p.I384	1.000	67	0%	78	29.5%	0	-	-	-	-	NULL
LOC283711	283711	genome.wustl.edu	37	15	31712373	31712373	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_040656.2	+1	model	NULL	0.000	19	0%	26	34.6%	0	-	-	-	-	-
OTUD7A	161725	genome.wustl.edu	37	15	31862308	31862308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130901.1	-1	provisional	p.R82W	1.000	111	0%	83	30.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
CHRNA7	1139	genome.wustl.edu	37	15	32451847	32451847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000746.3	+1	reviewed	p.P291S	1.000	176	0%	179	27.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
FMN1	342184	genome.wustl.edu	37	15	33359119	33359119	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001103184.2	-1	validated	p.L323	0.031	109	0%	124	25.8%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34118895	34118895	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001036.3	+1	validated	p.D3729	0.619	166	0%	196	35.7%	0	-	-	-	-	HMMPfam_RIH_assoc
C15orf24	56851	genome.wustl.edu	37	15	34393896	34393896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020154.2	-1	validated	p.G49R	1.000	102	0%	75	16%	102	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2012
SLC12A6	9990	genome.wustl.edu	37	15	34628755	34628755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133647.1	-1	reviewed	p.V43I	1.000	52	0%	109	29.4%	1	0%	possibly_damaging(0.458)	tolerated(0.51)	neutral(0.159)	NULL
ATPBD4	89978	genome.wustl.edu	37	15	35665760	35665760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080650.3	-1	validated	p.A238T	1.000	305	0.3%	375	25.1%	14	0%	benign(0.02)	tolerated(0.11)	neutral(0.273)	HMMPfam_ATP_bind_4,superfamily_Adenine nucleotide alpha hydrolases-like
TMCO5A	145942	genome.wustl.edu	37	15	38229564	38229564	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152453.2	+1	provisional	p.T94	0.478	201	0%	218	28.4%	0	-	-	-	-	NULL
THBS1	7057	genome.wustl.edu	37	15	39874806	39874806	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003246.2	+1	reviewed	p.V160	1.000	45	0%	53	41.5%	22	0%	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
FSIP1	161835	genome.wustl.edu	37	15	40005706	40005706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152597.4	-1	validated	p.R376H	0.913	523	0%	705	38.3%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EIF2AK4	440275	genome.wustl.edu	37	15	40321631	40321631	+	Silent	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013703.2	+1	validated	p.V1509	0.871	161	0%	202	31.2%	54	0%	-	-	-	NULL
FAM82A2	55177	genome.wustl.edu	37	15	41030768	41030768	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018145.1	-1	provisional	p.A326	0.986	47	0%	77	29.9%	68	0%	-	-	-	superfamily_TPR-like
DNAJC17	55192	genome.wustl.edu	37	15	41065947	41065947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018163.2	-1	validated	p.R257H	0.010	14	0%	14	50%	33	0%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
DNAJC17	55192	genome.wustl.edu	37	15	41068453	41068453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018163.2	-1	validated	p.E140G	1.000	21	0%	20	40%	32	3.1%	possibly_damaging(0.759)	deleterious(0.01)	deleterious(0.687)	NULL
VPS18	57617	genome.wustl.edu	37	15	41191854	41191854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020857.2	+1	reviewed	p.A280T	0.039	56	0%	55	29.1%	21	0%	benign(0.062)	tolerated(0.35)	neutral(0.025)	NULL
INO80	54617	genome.wustl.edu	37	15	41348850	41348850	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017553.1	-1	reviewed	p.T680	0.998	314	0%	294	33.7%	7	0%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
NDUFAF1	51103	genome.wustl.edu	37	15	41687155	41687155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016013.2	-1	validated	p.V221M	1.000	68	0%	142	19.7%	55	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CIA30
LTK	4058	genome.wustl.edu	37	15	41797228	41797228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002344.5	-1	reviewed	p.A654T	0.977	9	0.000	17	0.294	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RPAP1	26015	genome.wustl.edu	37	15	41812991	41812991	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015540.2	-1	reviewed	p.R1131	0.845	14	0%	16	50%	15	0%	-	-	-	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42109643	42109643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128608.1	+1	validated	p.R596H	1.000	50	0%	37	45.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42139693	42139693	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005090.3	+1	validated	p.S933	0.809	39	0%	27	48.1%	8	0%	-	-	-	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
EHD4	30844	genome.wustl.edu	37	15	42235276	42235276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139265.3	-1	validated	p.R167H	1.000	7	0.000	8	0.500	43	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Dynamin_N,superfamily_SSF52540
PLA2G4E	123745	genome.wustl.edu	37	15	42276164	42276164	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080490.1	-1	provisional	p.R770*	0.999	8	0.000	16	0.312	0	-	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4F	255189	genome.wustl.edu	37	15	42436341	42436341	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_213600.3	-1	validated	p.D659	0.005	47	0%	34	17.6%	4	0%	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
HAUS2	55142	genome.wustl.edu	37	15	42851586	42851586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018097.2	+1	validated	p.V79A	1.000	36	0%	41	12.2%	24	0%	benign(0.119)	deleterious(0.01)	neutral(0.415)	NULL
TGM5	9333	genome.wustl.edu	37	15	43552681	43552681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_201631.3	-1	reviewed	p.G36D	1.000	162	0%	163	11.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transglut_N,superfamily_E set domains
TGM7	116179	genome.wustl.edu	37	15	43585697	43585697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052955.2	-1	validated	p.S48N	0.001	28	0%	24	33.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Transglut_N,superfamily_Ig_E-set
TUBGCP4	27229	genome.wustl.edu	37	15	43692325	43692325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014444.2	+1	provisional	p.R501H	1.000	102	0%	110	40%	64	0%	benign(0.03)	tolerated(0.35)	neutral(0.022)	HMMPfam_Spc97_Spc98
MAP1A	4130	genome.wustl.edu	37	15	43815290	43815290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002373.5	+1	reviewed	p.R540H	0.966	96	0%	98	15.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPG11	80208	genome.wustl.edu	37	15	44876465	44876465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025137.3	-1	reviewed	p.R1805C	1.000	96	0%	107	15.9%	24	4.1%	possibly_damaging(0.945)	tolerated(0.15)	deleterious(0.631)	NULL
DUOX2	50506	genome.wustl.edu	37	15	45391967	45391967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014080.4	-1	reviewed	p.R1103H	1.000	39	0%	48	31.2%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_Ferric_reduct
HMGN2P46	283651	genome.wustl.edu	37	15	45847756	45847756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000313559	+1	known	p.H36Y	0.046	82	1.2%	131	40.5%	0	-	-	-	-	NULL
HMGN2P46	283651	genome.wustl.edu	37	15	45847816	45847816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000313559	+1	known	p.A56T	0.000	121	0%	185	33.5%	1	0%	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48054440	48054440	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153618.1	+1	reviewed	p.S194	0.980	243	0%	260	31.9%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MYEF2	50804	genome.wustl.edu	37	15	48444476	48444476	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016132.3	-1	validated	p.G365*	1.000	354	0%	376	29%	51	0%	-	-	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48500105	48500105	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000338.2	+1	reviewed	p.R63	1.000	94	0%	179	36.3%	0	-	unknown(0)	deleterious(0)	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48539113	48539113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000338.2	+1	reviewed	p.S487I	1.000	554	0%	633	29.9%	0	-	benign(0.26)	deleterious(0.02)	neutral(0.410)	HMMPfam_AA_permease
DUT	1854	genome.wustl.edu	37	15	48626677	48626677	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025248.1	+1	reviewed	p.A161	0.406	160	0%	150	30%	129	0%	-	-	-	HMMPfam_dUTPase,superfamily_SSF51283
SECISBP2L	9728	genome.wustl.edu	37	15	49292145	49292145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014701.2	-1	provisional	p.A718V	1.000	226	0%	301	24.3%	7	0%	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315
C15orf33	196951	genome.wustl.edu	37	15	49867307	49867307	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152647.2	-1	validated	e7-1	0.599	159	0%	207	31.9%	0	-	-	-	-	-
ATP8B4	79895	genome.wustl.edu	37	15	50223451	50223451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024837.2	-1	validated	p.A503T	1.000	268	0%	387	27.1%	0	-	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
TRPM7	54822	genome.wustl.edu	37	15	50935546	50935546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017672.4	-1	reviewed	p.V176I	1.000	147	0%	146	19.2%	7	0%	probably_damaging(0.988)	tolerated(0.36)	neutral(0.458)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51778324	51778324	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015263.3	-1	validated	p.R1810*	0.516	158	0%	159	31.4%	3	0%	-	-	-	NULL
MAPK6	5597	genome.wustl.edu	37	15	52342227	52342227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002748.3	+1	reviewed	p.R198I	1.000	208	0%	233	27%	40	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GNB5	10681	genome.wustl.edu	37	15	52439696	52439696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016194.3	-1	reviewed	p.A152T	1.000	94	0%	147	42.2%	19	0%	benign(0.064)	tolerated(1)	neutral(0.004)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MYO5C	55930	genome.wustl.edu	37	15	52536689	52536689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018728.2	-1	validated	p.R752*	0.999	154	0%	131	31.3%	15	0%	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52689492	52689492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000259.3	-1	reviewed	p.A409T	1.000	160	0%	201	18.4%	2	0%	possibly_damaging(0.705)	deleterious(0.01)	deleterious(0.659)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCPG1	9236	genome.wustl.edu	37	15	55664072	55664072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004748.3	-1	validated	p.R209C	0.465	95	0%	168	42.9%	23	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
PYGO1	26108	genome.wustl.edu	37	15	55838476	55838476	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015617.1	-1	provisional	p.S335	0.830	336	0%	399	28.6%	6	0%	-	-	-	superfamily_FYVE_PHD_ZnF
PRTG	283659	genome.wustl.edu	37	15	55964748	55964748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173814.4	-1	validated	p.A646T	0.973	97	0%	85	14.1%	0	-	possibly_damaging(0.692)	tolerated(0.47)	neutral(0.259)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
RFX7	64864	genome.wustl.edu	37	15	56388340	56388340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022841.5	-1	validated	p.A529V	0.046	45	0%	89	27%	16	0%	benign(0.001)	tolerated(1)	-	NULL
CGNL1	84952	genome.wustl.edu	37	15	57816782	57816782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032866.3	+1	validated	p.A958T	1.000	189	0%	155	20.6%	12	0%	benign(0.134)	tolerated(0.49)	neutral(0.022)	NULL
ALDH1A2	8854	genome.wustl.edu	37	15	58302914	58302914	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003888.2	-1	reviewed	p.G142	0.266	108	0%	88	19.3%	1	0%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
LIPC	3990	genome.wustl.edu	37	15	58830603	58830603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000236.2	+1	reviewed	p.L54I	1.000	457	0%	527	34.9%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
ENSG00000182625	0	genome.wustl.edu	37	15	58978632	58978632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000331871	+1	known	p.S8I	0.002	12	0%	11	45.5%	0	-	possibly_damaging(0.488)	deleterious(0.01)	deleterious(0.568)	HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like
SLTM	79811	genome.wustl.edu	37	15	59175970	59175970	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024755.2	-1	validated	p.R951*	0.897	135	0%	139	38.8%	176	0%	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59347881	59347881	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017610.6	+1	reviewed	p.R336	1.000	67	0%	63	34.9%	15	0%	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59359263	59359263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017610.6	+1	reviewed	p.G556D	0.983	196	0%	344	13.7%	16	0%	benign(0.03)	deleterious(0)	neutral(0.446)	NULL
RNF111	54778	genome.wustl.edu	37	15	59373373	59373373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017610.6	+1	reviewed	p.Q729H	1.000	256	0%	361	18.8%	23	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MYO1E	4643	genome.wustl.edu	37	15	59430410	59430410	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004998.2	-1	validated	p.D1079	0.631	322	0%	268	29.9%	47	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
MYO1E	4643	genome.wustl.edu	37	15	59466393	59466393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004998.2	-1	validated	p.A699V	1.000	259	0%	253	21.7%	53	0%	possibly_damaging(0.728)	deleterious(0.02)	deleterious(0.648)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1E	4643	genome.wustl.edu	37	15	59480341	59480341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004998.2	-1	validated	p.R627H	1.000	205	0%	210	29.5%	35	2.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NARG2	79664	genome.wustl.edu	37	15	60760323	60760323	+	Silent	SNP	G	G	A	rs191697711	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024611.4	-1	validated	p.Y115	0.882	157	0%	218	28%	21	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62174892	62174892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020821.1	-1	validated	p.R3176H	0.011	238	0%	201	25.9%	8	0%	benign(0.013)	tolerated(0.13)	neutral(0.253)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62182561	62182561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020821.1	-1	validated	p.Q3048H	1.000	144	0%	178	16.3%	22	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62221714	62221714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020821.1	-1	validated	p.V2091A	0.695	170	0%	194	29.4%	11	9%	benign(0.046)	tolerated(0.73)	neutral(0.004)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62333531	62333531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020821.1	-1	validated	p.G60D	1.000	89	0%	145	22.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLN2	83660	genome.wustl.edu	37	15	62994286	62994286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015059.2	+1	reviewed	p.A598T	1.000	22	0%	36	16.7%	0	-	probably_damaging(0.973)	tolerated(0.09)	deleterious(0.712)	HMMPfam_Talin_middle,superfamily_Talin_cent
TLN2	83660	genome.wustl.edu	37	15	63000913	63000913	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015059.2	+1	reviewed	p.G795	0.268	26	0%	29	27.6%	1	0%	-	-	-	superfamily_SSF109885
TLN2	83660	genome.wustl.edu	37	15	63047834	63047834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015059.2	+1	reviewed	p.F1527S	1.000	83	0%	78	11.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF109885
TLN2	83660	genome.wustl.edu	37	15	63054515	63054515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015059.2	+1	reviewed	p.M1608I	1.000	544	0%	533	10.5%	1	0%	benign(0.015)	tolerated(0.68)	neutral(0.003)	NULL
LACTB	114294	genome.wustl.edu	37	15	63421845	63421845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032857.2	+1	reviewed	p.A372T	1.000	131	0%	223	39.5%	5	0%	possibly_damaging(0.546)	tolerated(0.07)	deleterious(0.504)	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
USP3	9960	genome.wustl.edu	37	15	63824864	63824864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006537.2	+1	validated	p.S37N	1.000	157	0%	246	26.4%	12	0%	possibly_damaging(0.749)	tolerated(0.08)	deleterious(0.575)	HMMPfam_zf-UBP
ENSG00000247530	0	genome.wustl.edu	37	15	63880884	63880884	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000499437	-1	known	NULL	0.000	83	0%	146	39%	1	0%	-	-	-	-
ZNF609	23060	genome.wustl.edu	37	15	64966218	64966218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015042.1	+1	provisional	p.A389T	0.945	213	0%	216	31%	20	0%	benign(0)	tolerated(1)	-	NULL
RBPMS2	348093	genome.wustl.edu	37	15	65041342	65041342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194272.1	-1	provisional	p.R92H	1.000	79	0%	85	30.6%	20	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ANKDD1A	348094	genome.wustl.edu	37	15	65208032	65208032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182703.3	+1	validated	p.R24H	0.047	40	0%	41	29.3%	0	-	probably_damaging(0.973)	tolerated(0.13)	deleterious(0.667)	HMMPfam_Ank,superfamily_ANK
SPG21	51324	genome.wustl.edu	37	15	65256045	65256045	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127889.1	-1	reviewed	p.Y281	0.688	132	0%	219	37%	371	0%	-	-	-	NULL
CILP	8483	genome.wustl.edu	37	15	65491332	65491332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003613.3	-1	reviewed	p.R431H	0.295	53	0%	97	30.9%	0	-	benign(0.027)	tolerated(0.16)	neutral(0.061)	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65917240	65917240	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004727.2	+1	validated	p.S274	0.000	93	0%	154	17.5%	7	0%	-	-	-	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65946296	65946296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004727.2	+1	validated	p.A1060V	1.000	280	0%	320	30%	6	0%	possibly_damaging(0.756)	tolerated(0.1)	deleterious(0.566)	HMMPfam_Na_Ca_ex
DIS3L	115752	genome.wustl.edu	37	15	66621628	66621628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133375.3	+1	validated	p.R726H	1.000	139	0%	165	26.7%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNB
LCTL	197021	genome.wustl.edu	37	15	66845530	66845530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_207338.2	-1	validated	p.S330N	1.000	196	0%	262	13.4%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
IQCH	64799	genome.wustl.edu	37	15	67687836	67687836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031715.2	+1	validated	p.R614C	0.060	146	0%	166	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP2K5	5607	genome.wustl.edu	37	15	67873140	67873140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145160.1	+1	reviewed	p.P101S	1.000	153	0%	188	36.7%	29	0%	benign(0.322)	deleterious(0)	deleterious(0.545)	NULL
PAQR5	54852	genome.wustl.edu	37	15	69677168	69677168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001104554.1	+1	validated	p.A111V	1.000	277	0%	562	11.7%	30	0%	possibly_damaging(0.69)	tolerated(0.11)	deleterious(0.518)	HMMPfam_HlyIII
ENSG00000245184	0	genome.wustl.edu	37	15	69746347	69746347	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000501805	-1	novel	NULL	0.000	4	0.000	9	0.444	2	0%	-	-	-	-
UACA	55075	genome.wustl.edu	37	15	70961255	70961255	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018003.2	-1	validated	p.R590*	0.314	512	0%	580	12.1%	28	0%	-	-	-	NULL
THSD4	79875	genome.wustl.edu	37	15	72040791	72040791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024817.2	+1	provisional	p.T758I	1.000	40	0%	47	27.7%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MYO9A	4649	genome.wustl.edu	37	15	72119284	72119284	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006901.2	-1	validated	p.V2428	0.999	94	0%	137	46.7%	5	0%	-	-	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72190250	72190250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006901.2	-1	validated	p.T1532A	0.055	125	0%	156	28.2%	5	0%	possibly_damaging(0.49)	tolerated(0.05)	deleterious(0.508)	NULL
PARP6	56965	genome.wustl.edu	37	15	72552974	72552974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020214.2	-1	provisional	p.P201S	1.000	514	0%	894	36.7%	64	0%	benign(0.029)	tolerated(0.13)	neutral(0.254)	NULL
CELF6	60677	genome.wustl.edu	37	15	72579635	72579635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052840.4	-1	reviewed	p.R473W	0.988	12	0%	41	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
CELF6	60677	genome.wustl.edu	37	15	72580738	72580738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052840.4	-1	reviewed	p.A410V	0.997	33	0%	66	24.2%	3	0%	benign(0.386)	deleterious(0.01)	deleterious(0.529)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TMEM202	338949	genome.wustl.edu	37	15	72691086	72691086	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080462.1	+1	provisional	p.T58	0.938	36	0%	78	14.1%	0	-	-	-	-	NULL
BBS4	585	genome.wustl.edu	37	15	73029294	73029294	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033028.3	+1	reviewed	p.T480	0.275	306	0.7%	328	14.6%	24	0%	-	-	-	NULL
NEO1	4756	genome.wustl.edu	37	15	73575381	73575381	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002499.3	+1	validated	p.G1113	0.470	593	0%	550	37.5%	56	0%	-	-	-	HMMPfam_Neogenin_C
NEO1	4756	genome.wustl.edu	37	15	73580792	73580792	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002499.3	+1	validated	p.P1183	0.988	155	0%	153	30.1%	55	0%	-	-	-	HMMPfam_Neogenin_C
C15orf59	388135	genome.wustl.edu	37	15	74032668	74032668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039614.1	-1	predicted	p.D158Y	1.000	22	0%	23	30.4%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PML	5371	genome.wustl.edu	37	15	74325012	74325012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033238.2	+1	reviewed	p.V452M	0.288	46	0%	83	38.6%	22	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CYP11A1	1583	genome.wustl.edu	37	15	74630944	74630944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000781.2	-1	reviewed	p.A468T	1.000	117	0%	134	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
LMAN1L	79748	genome.wustl.edu	37	15	75109003	75109003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021819.2	+1	validated	p.D157N	0.010	6	0.000	14	0.571	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_Lectin_leg-like,superfamily_Concanavalin A-like lectins/glucanases
LOC646791	646791	genome.wustl.edu	37	15	75614139	75614139	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_017650.3	-1	model	NULL	0.945	42	0%	79	25.3%	0	-	-	-	-	-
SIN3A	25942	genome.wustl.edu	37	15	75673043	75673043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145357.1	-1	reviewed	p.R1104*	1.000	64	0%	87	36.8%	68	0%	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75968105	75968105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001897.4	-1	reviewed	p.T2252M	0.990	39	0%	37	24.3%	4	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CSPG4	1464	genome.wustl.edu	37	15	75981912	75981912	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001897.4	-1	reviewed	p.D498	0.990	7	0.000	12	0.583	0	-	-	-	-	NULL
C15orf27	123591	genome.wustl.edu	37	15	76452494	76452494	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152335.2	+1	validated	p.S147	0.066	66	0%	62	12.9%	0	-	-	-	-	NULL
ETFA	2108	genome.wustl.edu	37	15	76588036	76588036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000126.3	-1	reviewed	p.H28Y	1.000	116	0%	168	14.3%	86	0%	benign(0.243)	deleterious(0.03)	neutral(0.389)	HMMPfam_ETF,superfamily_Adenine nucleotide alpha hydrolases-like
LINGO1	84894	genome.wustl.edu	37	15	77906805	77906805	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032808.5	-1	validated	p.L482	1.000	20	0%	15	33.3%	72	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LINGO1	84894	genome.wustl.edu	37	15	77907402	77907402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032808.5	-1	validated	p.V283I	0.996	32	0%	67	32.8%	71	0%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_LRR_1,superfamily_L domain-like
TBC1D2B	23102	genome.wustl.edu	37	15	78316631	78316631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144572.1	-1	validated	p.T446I	1.000	104	0%	107	30.8%	7	0%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
ACSBG1	23205	genome.wustl.edu	37	15	78466798	78466798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015162.3	-1	reviewed	p.L591M	0.995	61	0%	53	22.6%	0	-	benign(0.21)	tolerated(0.09)	neutral(0.317)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
CHRNA5	1138	genome.wustl.edu	37	15	78879017	78879017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000745.2	+1	provisional	p.V97I	1.000	336	0%	711	31.5%	37	0%	possibly_damaging(0.837)	tolerated(0.05)	deleterious(0.665)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CHRNA3	1136	genome.wustl.edu	37	15	78889049	78889049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000743.4	-1	reviewed	p.A472V	1.000	123	0.8%	166	31.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CHRNB4	1143	genome.wustl.edu	37	15	78922283	78922283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000750.3	-1	validated	p.D122N	0.998	38	0%	77	37.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
MORF4L1	10933	genome.wustl.edu	37	15	79177314	79177314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206839.1	+1	validated	p.A54V	1.000	94	0%	141	29.1%	7	0%	benign(0.007)	tolerated(0.31)	neutral(0.027)	NULL
RASGRF1	5923	genome.wustl.edu	37	15	79292190	79292190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002891.4	-1	reviewed	p.R897C	1.000	115	0%	94	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
KIAA1024	23251	genome.wustl.edu	37	15	79749991	79749991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015206.2	+1	validated	p.R501M	0.954	59	0%	81	13.6%	0	-	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81234603	81234603	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018689.1	+1	validated	p.D1208	1.000	190	0%	170	25.9%	3	0%	unknown(0)	-	-	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81241196	81241196	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018689.1	+1	validated	p.D1339	0.007	114	0%	65	24.6%	13	0%	-	-	-	NULL
IL16	3603	genome.wustl.edu	37	15	81592708	81592708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172217.3	+1	reviewed	p.T1014I	0.000	126	0%	91	24.2%	6	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
TMC3	342125	genome.wustl.edu	37	15	81630186	81630186	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080532.1	-1	provisional	e19+1	0.999	58	0%	52	44.2%	0	-	-	-	-	-
FAM154B	283726	genome.wustl.edu	37	15	82574624	82574624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008226.1	+1	predicted	p.R140C	0.000	371	0%	459	25.5%	0	-	benign(0.006)	tolerated(0.24)	neutral(0.037)	NULL
CPEB1	64506	genome.wustl.edu	37	15	83215935	83215935	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030594.3	-1	reviewed	p.S484	0.989	92	0%	71	21.1%	0	-	-	-	-	superfamily_SSF54928
HOMER2	9455	genome.wustl.edu	37	15	83561567	83561567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199330.1	-1	reviewed	p.A11V	1.000	181	0.6%	172	10.5%	37	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
FAM103A1	83640	genome.wustl.edu	37	15	83657865	83657865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031452.2	+1	predicted	p.R32H	1.000	59	0%	128	38.3%	57	0%	benign(0.028)	deleterious(0)	neutral(0.446)	NULL
TM6SF1	53346	genome.wustl.edu	37	15	83781608	83781608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023003.3	+1	validated	p.R51H	0.743	95	0%	164	36%	1	0%	probably_damaging(0.988)	tolerated(0.53)	neutral(0.445)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85400513	85400513	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020778.4	+1	validated	p.P1050	0.000	38	0%	45	31.1%	0	-	-	-	-	NULL
KLHL25	64410	genome.wustl.edu	37	15	86311751	86311751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022480.3	-1	validated	p.R431W	0.326	42	0%	44	11.4%	21	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
AGBL1	123624	genome.wustl.edu	37	15	86808037	86808037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152336.2	+1	validated	p.Q499H	0.888	191	0%	169	29%	0	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
AGBL1	123624	genome.wustl.edu	37	15	86822881	86822881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152336.2	+1	validated	p.R650H	0.002	353	0%	361	34.6%	0	-	benign(0.03)	tolerated(0.11)	neutral(0.273)	NULL
AEN	64782	genome.wustl.edu	37	15	89172508	89172508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022767.3	+1	validated	p.D198N	1.000	90	0%	82	13.4%	45	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
ISG20	3669	genome.wustl.edu	37	15	89195437	89195437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002201.4	+1	provisional	p.D109N	0.976	65	0%	53	30.2%	105	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
POLG	5428	genome.wustl.edu	37	15	89869917	89869917	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001126131.1	-1	reviewed	p.R546	0.000	39	0%	59	11.9%	27	0%	-	-	-	NULL
MESP2	145873	genome.wustl.edu	37	15	90320393	90320393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039958.1	+1	reviewed	p.A269T	0.000	5	0.000	6	0.667	0	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
ZNF774	342132	genome.wustl.edu	37	15	90904218	90904218	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004309.2	+1	validated	p.A385	0.000	130	0%	180	15%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BLM	641	genome.wustl.edu	37	15	91293197	91293197	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000057.2	+1	reviewed	p.S233	0.000	149	0%	145	31%	3	0%	-	-	-	NULL
BLM	641	genome.wustl.edu	37	15	91298081	91298081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000057.2	+1	reviewed	p.V334I	0.000	92	0%	163	35%	11	0%	benign(0)	tolerated(0.97)	-	NULL
BLM	641	genome.wustl.edu	37	15	91328208	91328208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000057.2	+1	reviewed	p.T907M	0.984	89	0%	129	28.7%	20	0%	possibly_damaging(0.934)	tolerated(0.07)	deleterious(0.699)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
MAN2A2	4122	genome.wustl.edu	37	15	91450665	91450665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006122.2	+1	validated	p.R379H	1.000	23	0%	27	25.9%	10	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
UNC45A	55898	genome.wustl.edu	37	15	91483621	91483621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018671.3	+1	validated	p.R202H	1.000	20	0%	28	39.3%	76	0%	probably_damaging(0.968)	tolerated(0.1)	deleterious(0.696)	superfamily_ARM repeat
LOC100288997	100288997	genome.wustl.edu	37	15	91491812	91491812	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343396.1	-1	model	p.A262	0.064	10	0%	19	57.9%	2	0%	-	-	-	NULL
ENSG00000214432	0	genome.wustl.edu	37	15	91578447	91578447	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000389283	+1	known	NULL	0.001	22	0%	20	30%	0	-	-	-	-	-
SV2B	9899	genome.wustl.edu	37	15	91801672	91801672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014848.4	+1	validated	p.T269I	1.000	141	0%	160	37.5%	0	-	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CHD2	1106	genome.wustl.edu	37	15	93567736	93567736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001271.3	+1	reviewed	p.R1763H	1.000	89	0%	105	42.9%	34	0%	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	NULL
MCTP2	55784	genome.wustl.edu	37	15	94841903	94841903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018349.3	+1	validated	p.G137S	0.044	161	0%	148	29.1%	0	-	benign(0.017)	tolerated(0.63)	neutral(0.004)	NULL
HSP90B2P	7190	genome.wustl.edu	37	15	99798859	99798859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000378906	+1	known	p.T4I	1.000	81	0%	110	30.9%	0	-	-	-	-	HMMPfam_HSP90
ADAMTS17	170691	genome.wustl.edu	37	15	100514630	100514630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139057.2	-1	reviewed	p.R1089C	1.000	47	0%	31	29%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100514684	100514684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139057.2	-1	reviewed	p.R1071W	0.999	53	0%	38	28.9%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PLAC
ADAMTS17	170691	genome.wustl.edu	37	15	100801716	100801716	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139057.2	-1	reviewed	p.P333	0.005	60	0%	59	23.7%	0	-	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
LINS	55180	genome.wustl.edu	37	15	101114302	101114302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040614.1	-1	reviewed	p.L259P	0.992	136	0%	208	26.4%	13	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRRK1	79705	genome.wustl.edu	37	15	101528988	101528988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024652.3	+1	validated	p.R195C	0.100	47	0%	68	23.5%	6	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMSmart_SM00248,superfamily_Ankyrin repeat
LRRK1	79705	genome.wustl.edu	37	15	101562588	101562588	+	Missense_Mutation	SNP	G	G	A	rs80186667		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024652.3	+1	validated	p.G618D	1.000	151	0%	135	31.1%	9	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_L domain-like
LRRK1	79705	genome.wustl.edu	37	15	101606267	101606267	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024652.3	+1	validated	p.C1875	0.000	156	0%	103	15.5%	15	0%	-	-	-	NULL
CHSY1	22856	genome.wustl.edu	37	15	101717915	101717915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000254190	-1	known	p.T696M	0.998	202	0%	249	34.5%	41	0%	possibly_damaging(0.762)	deleterious(0.03)	deleterious(0.647)	HMMPfam_CHGN,superfamily_SSF53448
SNRNP25	79622	genome.wustl.edu	37	16	105549	105549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024571.3	+1	reviewed	p.P54S	1.000	26	0%	57	35.1%	251	0%	probably_damaging(0.953)	tolerated(0.09)	deleterious(0.693)	superfamily_SSF54236
ITFG3	83986	genome.wustl.edu	37	16	304525	304525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032039.2	+1	validated	p.A38V	0.000	137	0%	205	22.9%	40	0%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
C16orf91	283951	genome.wustl.edu	37	16	1476197	1476197	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010878.1	-1	provisional	p.P142	0.000	12	0%	13	61.5%	0	-	-	-	-	NULL
RNF151	146310	genome.wustl.edu	37	16	2017280	2017280	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174903.4	+1	provisional	p.G3	0.960	10	0%	18	33.3%	0	-	-	-	-	superfamily_SSF57850
TSC2	7249	genome.wustl.edu	37	16	2129135	2129135	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000548.3	+1	reviewed	p.T1023	0.048	6	0.000	14	0.286	79	0%	-	-	-	NULL
TSC2	7249	genome.wustl.edu	37	16	2138087	2138087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000548.3	+1	reviewed	p.V1703M	0.999	4	0.000	12	0.417	134	0%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
ABCA3	21	genome.wustl.edu	37	16	2376014	2376014	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001089.2	-1	reviewed	p.R106*	0.994	15	0%	22	36.4%	0	-	-	-	-	NULL
C16orf59	80178	genome.wustl.edu	37	16	2510899	2510899	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025108.2	+1	validated	p.G93	0.003	23	0%	14	50%	28	0%	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815144	2815144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016333.3	+1	validated	p.S1539P	0.918	237	0%	446	14.1%	139	0.7%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815822	2815822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016333.3	+1	validated	p.P1765S	1.000	74	0%	122	27.9%	167	0%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2816153	2816153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016333.3	+1	validated	p.R1875Q	0.998	114	0%	180	29.4%	215	0%	unknown(0)	-	-	NULL
CLDN6	9074	genome.wustl.edu	37	16	3065861	3065861	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021195.4	-1	reviewed	p.C54	0.995	11	0%	17	35.3%	6	0%	-	-	-	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
THOC6	79228	genome.wustl.edu	37	16	3077614	3077614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024339.3	+1	validated	p.V328I	1.000	20	0%	20	25%	77	0%	possibly_damaging(0.505)	tolerated(0.48)	neutral(0.180)	superfamily_WD40 repeat-like
ZNF200	7752	genome.wustl.edu	37	16	3283673	3283673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003454.3	-1	validated	p.G28D	1.000	10	0%	15	33.3%	16	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
TIGD7	91151	genome.wustl.edu	37	16	3350315	3350315	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033208.2	-1	validated	p.G100	0.981	132	0%	189	30.7%	26	0%	-	-	-	HMMSmart_SM00674,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind
SLX4	84464	genome.wustl.edu	37	16	3641022	3641022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032444.2	-1	provisional	p.A873T	0.000	52	0%	54	29.6%	5	0%	possibly_damaging(0.767)	tolerated(0.28)	neutral(0.316)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3778607	3778607	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004380.2	-1	reviewed	p.A2147	0.034	27	0%	21	19%	24	4.1%	-	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3900364	3900364	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004380.2	-1	reviewed	p.T244	0.228	120	0%	124	32.3%	15	0%	-	-	-	NULL
ADCY9	115	genome.wustl.edu	37	16	4015794	4015794	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001116.2	-1	reviewed	p.N1348	0.993	80	0%	76	36.8%	3	0%	-	-	-	NULL
ADCY9	115	genome.wustl.edu	37	16	4043426	4043426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001116.2	-1	reviewed	p.E657V	1.000	45	0%	35	22.9%	4	0%	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	NULL
SRL	6345	genome.wustl.edu	37	16	4247817	4247817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098814.1	-1	validated	p.R120H	1.000	46	0%	117	32.5%	0	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	superfamily_SSF52540
TFAP4	7023	genome.wustl.edu	37	16	4312613	4312613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003223.2	-1	validated	p.R60H	1.000	30	0%	32	40.6%	41	0%	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
CORO7	79585	genome.wustl.edu	37	16	4408026	4408026	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024535.3	-1	validated	p.Q846*	0.242	7	0.000	25	0.360	12	0%	-	-	-	HMMPfam_DUF1900
DNAJA3	9093	genome.wustl.edu	37	16	4491408	4491408	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005147.4	+1	validated	p.Y154	0.997	65	0%	80	18.8%	41	0%	-	-	-	HMMPfam_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1
ANKS3	124401	genome.wustl.edu	37	16	4764109	4764109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133450.2	-1	provisional	p.V218M	0.990	48	0%	66	33.3%	23	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKS3	124401	genome.wustl.edu	37	16	4774772	4774772	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133450.2	-1	provisional	p.I184	0.401	53	0%	60	25%	28	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
C16orf71	146562	genome.wustl.edu	37	16	4786589	4786589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139170.2	+1	validated	p.A25V	0.652	52	0%	75	32%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
PPL	5493	genome.wustl.edu	37	16	4935049	4935049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002705.4	-1	reviewed	p.R1203W	0.995	123	0%	106	12.3%	31	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SEC14L5	9717	genome.wustl.edu	37	16	5046870	5046870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014692.1	+1	validated	p.E265D	1.000	29	0%	22	27.3%	0	-	benign(0.394)	tolerated(0.25)	neutral(0.164)	HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N
SEC14L5	9717	genome.wustl.edu	37	16	5047025	5047025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014692.1	+1	validated	p.G317D	1.000	20	0%	14	28.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
RBFOX1	54715	genome.wustl.edu	37	16	7637291	7637291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145891.2	+1	reviewed	p.R173*	1.000	80	0%	94	36.2%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ABAT	18	genome.wustl.edu	37	16	8858612	8858612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000663.4	+1	reviewed	p.M155I	0.999	71	0%	62	25.8%	0	-	benign(0.004)	tolerated(0.07)	neutral(0.319)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
USP7	7874	genome.wustl.edu	37	16	8989514	8989514	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003470.2	-1	validated	p.R968	0.993	63	0%	54	24.1%	190	0%	-	-	-	NULL
USP7	7874	genome.wustl.edu	37	16	8993544	8993544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003470.2	-1	validated	p.V794I	0.999	102	0%	116	38.8%	114	0%	benign(0.094)	tolerated(0.76)	neutral(0.008)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857574	9857574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000833.3	-1	reviewed	p.A1276V	1.000	169	0%	152	32.9%	0	-	benign(0.013)	deleterious(0.05)	neutral(0.346)	HMMPfam_NMDAR2_C
EMP2	2013	genome.wustl.edu	37	16	10626848	10626848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001424.4	-1	validated	p.G140S	1.000	64	0%	86	29.1%	93	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PMP22_Claudin
EMP2	2013	genome.wustl.edu	37	16	10631869	10631869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001424.4	-1	validated	p.A78T	0.994	52	0%	48	10.4%	156	0%	benign(0.248)	tolerated(0.1)	neutral(0.311)	HMMPfam_PMP22_Claudin,PatternScan_PMP22_2
TEKT5	146279	genome.wustl.edu	37	16	10788486	10788486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144674.1	-1	provisional	p.R82H	1.000	50	0%	39	33.3%	0	-	possibly_damaging(0.494)	deleterious(0)	deleterious(0.609)	NULL
LITAF	9516	genome.wustl.edu	37	16	11647540	11647540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136472.1	-1	reviewed	p.V76M	0.963	27	0%	54	24.1%	38	0%	benign(0.186)	deleterious(0)	neutral(0.462)	NULL
LITAF	9516	genome.wustl.edu	37	16	11650545	11650545	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136472.1	-1	reviewed	p.S14	0.000	64	0%	82	30.5%	25	0%	-	-	-	NULL
ERCC4	2072	genome.wustl.edu	37	16	14029520	14029520	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005236.2	+1	reviewed	p.Y577	1.000	179	0%	211	37%	10	0%	-	-	-	NULL
RRN3	54700	genome.wustl.edu	37	16	15179553	15179553	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018427.3	-1	validated	p.R159*	0.985	32	0%	56	21.4%	15	0%	-	-	-	HMMPfam_RRN3
KIAA0430	9665	genome.wustl.edu	37	16	15692768	15692768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014647.3	-1	validated	p.V1643I	0.983	55	0%	37	48.6%	17	0%	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15696383	15696383	+	Missense_Mutation	SNP	C	C	T	rs193147815	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000344181	-1	known	p.V1146I	0.001	8	0.000	22	0.227	1	0%	unknown(0)	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15709700	15709700	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014647.3	-1	validated	p.P1080	0.986	280	0%	344	18.3%	13	0%	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15715692	15715692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014647.3	-1	validated	p.A846V	1.000	98	0%	93	24.7%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ABCC1	4363	genome.wustl.edu	37	16	16150074	16150074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004996.3	+1	reviewed	p.Q533	1.000	90	0%	134	33.6%	41	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC1	4363	genome.wustl.edu	37	16	16180714	16180714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004996.3	+1	reviewed	p.V776M	1.000	81	0%	96	20.8%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
XYLT1	64131	genome.wustl.edu	37	16	17292170	17292170	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022166.3	-1	reviewed	p.S396	1.000	62	0%	38	26.3%	0	-	-	-	-	HMMPfam_Branch
NOMO2	283820	genome.wustl.edu	37	16	18532185	18532185	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004060.1	-1	reviewed	p.G725	0.184	420	0%	495	9.5%	132	0%	-	-	-	NULL
SMG1	23049	genome.wustl.edu	37	16	18846404	18846404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015092.4	-1	reviewed	p.A2714T	1.000	395	0%	417	42.7%	9	0%	possibly_damaging(0.847)	tolerated(0.12)	deleterious(0.586)	NULL
COQ7	10229	genome.wustl.edu	37	16	19083354	19083354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016138.3	+1	reviewed	p.E60K	1.000	86	0%	127	17.3%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COQ7,superfamily_Ferritin-like
COQ7	10229	genome.wustl.edu	37	16	19087046	19087046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016138.3	+1	reviewed	p.A124V	0.950	72	0%	103	30.1%	30	0%	benign(0.004)	tolerated(0.77)	neutral(0.001)	HMMPfam_COQ7,superfamily_Ferritin-like
SYT17	51760	genome.wustl.edu	37	16	19234454	19234454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016524.2	+1	validated	p.Q347*	1.000	92	0%	136	36%	47	0%	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
C16orf62	57020	genome.wustl.edu	37	16	19580800	19580802	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020314.4	+1	predicted	p.S61in_frame_del	0.994:1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
C16orf62	57020	genome.wustl.edu	37	16	19580893	19580893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020314.4	+1	predicted	p.A89T	0.000	49	0%	42	40.5%	7	0%	benign(0.004)	tolerated(0.23)	neutral(0.042)	NULL
GP2	2813	genome.wustl.edu	37	16	20334285	20334285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007240.1	-1	validated	p.E187D	0.000	39	0%	28	32.1%	0	-	benign(0.007)	tolerated(0.18)	neutral(0.056)	NULL
LOC81691	81691	genome.wustl.edu	37	16	20856090	20856090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030941.2	+1	validated	p.R620H	0.000	194	0%	197	14.7%	3	0%	possibly_damaging(0.593)	tolerated(0.14)	neutral(0.455)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DNAH3	55567	genome.wustl.edu	37	16	21133439	21133439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017539.1	-1	provisional	p.N471D	1.000	142	0%	199	34.2%	0	-	possibly_damaging(0.696)	deleterious(0)	deleterious(0.694)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21156605	21156605	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017539.1	-1	provisional	p.S115	0.987	26	0%	41	43.9%	0	-	-	-	-	NULL
OTOA	146183	genome.wustl.edu	37	16	21730463	21730463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144672.3	+1	reviewed	p.L547M	1.000	100	0%	137	13.9%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
OTOA	146183	genome.wustl.edu	37	16	21730752	21730752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144672.3	+1	reviewed	p.A578V	0.714	101	0%	142	31%	0	-	benign(0.418)	deleterious(0.03)	deleterious(0.500)	NULL
ENSG00000235406	0	genome.wustl.edu	37	16	21910420	21910420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000457001	-1	known	p.V14I	1.000	106	0%	114	14%	0	-	-	-	-	NULL
POLR3E	55718	genome.wustl.edu	37	16	22328487	22328487	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018119.2	+1	validated	p.T275	0.834	93	0%	59	25.4%	41	0%	-	-	-	HMMPfam_Sin_N
HS3ST2	9956	genome.wustl.edu	37	16	22926524	22926524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006043.1	+1	reviewed	p.R249C	1.000	343	0%	324	17.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
HS3ST2	9956	genome.wustl.edu	37	16	22926605	22926605	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006043.1	+1	reviewed	p.R276*	1.000	406	0%	382	11.8%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
SCNN1G	6340	genome.wustl.edu	37	16	23197805	23197805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039.3	+1	reviewed	p.C71	0.761	72	0%	119	28.6%	0	-	-	-	-	HMMPfam_ASC
SCNN1B	6338	genome.wustl.edu	37	16	23379248	23379248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000336.2	+1	reviewed	p.A283V	0.799	139	0%	123	30.1%	0	-	benign(0.022)	tolerated(0.5)	neutral(0.011)	HMMPfam_ASC
SCNN1B	6338	genome.wustl.edu	37	16	23391479	23391479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000336.2	+1	reviewed	p.A511S	0.041	53	0%	65	32.3%	0	-	benign(0.15)	deleterious(0.01)	neutral(0.419)	HMMPfam_ASC
GGA2	23062	genome.wustl.edu	37	16	23505688	23505688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015044.4	-1	reviewed	p.A63V	1.000	65	0%	106	65.1%	30	0%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
PRKCB	5579	genome.wustl.edu	37	16	24202412	24202412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002738.6	+1	reviewed	p.L575P	1.000	127	0%	123	31.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RBBP6	5930	genome.wustl.edu	37	16	24582255	24582255	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006910.4	+1	reviewed	p.R1290*	0.997	113	0%	213	13.1%	46	0%	-	-	-	NULL
LCMT1	51451	genome.wustl.edu	37	16	25182077	25182077	+	Missense_Mutation	SNP	G	G	A	rs189072726	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016309.2	+1	validated	p.V279I	0.002	118	0%	130	26.9%	290	0%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_LCM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AQP8	343	genome.wustl.edu	37	16	25238424	25238424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001169.2	+1	reviewed	p.R213H	1.000	46	0%	42	28.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_MIP,superfamily_MIP
ZKSCAN2	342357	genome.wustl.edu	37	16	25251335	25251335	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012981.4	-1	validated	p.F902	0.022	212	0%	316	11.4%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZKSCAN2	342357	genome.wustl.edu	37	16	25266616	25266616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012981.4	-1	validated	p.A166V	0.000	46	0%	51	35.3%	1	0%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
IL4R	3566	genome.wustl.edu	37	16	27374141	27374141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000418.2	+1	reviewed	p.V490I	0.008	236	0%	158	26.6%	7	0%	possibly_damaging(0.537)	tolerated(0.13)	neutral(0.434)	NULL
IL21R	50615	genome.wustl.edu	37	16	27460100	27460100	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021798.2	+1	reviewed	p.Y371	0.010	20	0%	22	31.8%	2	0%	-	-	-	NULL
XPO6	23214	genome.wustl.edu	37	16	28115978	28115978	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015171.2	-1	provisional	p.T945	0.009	34	0%	38	60.5%	85	0%	-	-	-	superfamily_ARM repeat
XPO6	23214	genome.wustl.edu	37	16	28145247	28145247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015171.2	-1	provisional	p.T484M	1.000	69	0%	62	25.8%	63	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CLN3	1201	genome.wustl.edu	37	16	28493460	28493460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000086.2	-1	reviewed	p.R341H	0.049	14	0%	29	24.1%	104	0.9%	benign(0.009)	tolerated(0.47)	neutral(0.011)	HMMPfam_CLN3,superfamily_MFS general substrate transporter
LOC100288419	100288419	genome.wustl.edu	37	16	28493783	28493783	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343460.1	+1	model	e7-1	0.000	113	0%	97	13.4%	3	0%	-	-	-	-
LOC100288419	100288419	genome.wustl.edu	37	16	28493890	28493890	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343460.1	+1	model	p.S186	0.000	127	0%	86	15.1%	1	0%	-	-	-	NULL
APOBR	55911	genome.wustl.edu	37	16	28508552	28508552	+	Silent	SNP	G	G	A	rs187035381	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018690.2	+1	reviewed	p.A721	0.010	48	0%	37	29.7%	4	0%	-	-	-	NULL
APOBR	55911	genome.wustl.edu	37	16	28509784	28509784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018690.2	+1	reviewed	p.M1075I	1.000	47	0%	49	28.6%	4	0%	unknown(0)	deleterious(0)	-	NULL
ATXN2L	11273	genome.wustl.edu	37	16	28846685	28846685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_148414.1	+1	reviewed	p.P884S	1.000	38	0%	39	10.3%	112	0%	benign(0.316)	tolerated(0.27)	neutral(0.133)	NULL
SH2B1	25970	genome.wustl.edu	37	16	28883861	28883861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015503.2	+1	reviewed	p.R578C	1.000	48	0%	70	40%	80	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SPNS1	83985	genome.wustl.edu	37	16	28993840	28993840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142448.1	+1	validated	p.A377T	1.000	73	0%	88	25%	131	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_MFS general substrate transporter
MVP	9961	genome.wustl.edu	37	16	29845107	29845107	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005115.3	+1	reviewed	p.A125	0.001	57	0%	48	39.6%	21	0%	-	-	-	HMMPfam_Vault
TAOK2	9344	genome.wustl.edu	37	16	29996720	29996720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016151.2	+1	validated	p.A537T	0.637	23	0%	38	42.1%	54	0%	benign(0.007)	deleterious(0.05)	neutral(0.345)	NULL
CD2BP2	10421	genome.wustl.edu	37	16	30365576	30365576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006110.2	-1	reviewed	p.S49I	1.000	272	0%	354	33.3%	110	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBC1D10B	26000	genome.wustl.edu	37	16	30371094	30371094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015527.3	-1	validated	p.A447V	1.000	7	0.000	16	0.438	65	0%	possibly_damaging(0.844)	deleterious(0)	deleterious(0.768)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
FBRS	64319	genome.wustl.edu	37	16	30679907	30679907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105079.1	+1	validated	p.A181T	1.000	29	0%	33	36.4%	60	0%	benign(0.042)	tolerated(0.64)	neutral(0.005)	NULL
BCL7C	9274	genome.wustl.edu	37	16	30904573	30904573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004765.2	-1	reviewed	p.R44H	1.000	12	0%	24	37.5%	133	0%	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_BCL_N
HSD3B7	80270	genome.wustl.edu	37	16	30999362	30999362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025193.3	+1	reviewed	p.T323M	0.998	15	0%	18	38.9%	6	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_NAD(P)-bd
BCKDK	10295	genome.wustl.edu	37	16	31123561	31123561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005881.2	+1	validated	p.G405D	1.000	19	0%	24	45.8%	124	0.8%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
ITGAM	3684	genome.wustl.edu	37	16	31273018	31273018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000632.3	+1	reviewed	p.T12A	0.003	69	0%	57	43.9%	1	0%	unknown(0)	tolerated(1)	-	NULL
ITGAM	3684	genome.wustl.edu	37	16	31332639	31332639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000632.3	+1	reviewed	p.M595I	0.913	287	0%	381	40.2%	1	0%	benign(0.119)	tolerated(0.07)	neutral(0.329)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGAM	3684	genome.wustl.edu	37	16	31338179	31338179	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000632.3	+1	reviewed	p.V877	0.995	316	0%	387	31%	4	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGAM	3684	genome.wustl.edu	37	16	31342551	31342551	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000632.3	+1	reviewed	p.V1114	0.000	68	0%	92	27.2%	3	0%	-	-	-	NULL
ARMC5	79798	genome.wustl.edu	37	16	31473995	31473995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105247.1	+1	validated	p.G376D	0.971	20	0%	31	29%	17	0%	possibly_damaging(0.546)	tolerated(0.87)	neutral(0.186)	HMMSmart_SM00185,superfamily_ARM repeat
DNAJA2	10294	genome.wustl.edu	37	16	46993037	46993037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005880.3	-1	reviewed	p.V309I	1.000	52	0%	100	20%	126	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
ABCC11	85320	genome.wustl.edu	37	16	48234341	48234341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032583.3	-1	reviewed	p.S643N	1.000	54	0%	55	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
N4BP1	9683	genome.wustl.edu	37	16	48585338	48585338	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153029.3	-1	validated	p.A692	0.387	341	0%	287	34.5%	29	0%	-	-	-	NULL
ZNF423	23090	genome.wustl.edu	37	16	49671207	49671207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015069.2	-1	reviewed	p.R619Q	1.000	17	0%	26	23.1%	31	0%	benign(0.392)	tolerated(0.57)	neutral(0.132)	NULL
ZNF423	23090	genome.wustl.edu	37	16	49672268	49672268	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015069.2	-1	reviewed	p.C265	0.458	20	0%	38	44.7%	27	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
HEATR3	55027	genome.wustl.edu	37	16	50104187	50104187	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182922.2	+1	provisional	p.V166	1.000	51	0%	109	14.7%	24	0%	-	-	-	superfamily_ARM repeat
PAPD5	64282	genome.wustl.edu	37	16	50258633	50258633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040284.2	+1	validated	p.V259I	1.000	150	0%	291	34%	18	0%	benign(0.039)	tolerated(0.43)	neutral(0.015)	superfamily_PAP/OAS1 substrate-binding domain
ADCY7	113	genome.wustl.edu	37	16	50326599	50326599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114.3	+1	reviewed	p.A184T	0.059	41	0%	36	33.3%	6	0%	benign(0.106)	tolerated(0.08)	neutral(0.308)	NULL
ADCY7	113	genome.wustl.edu	37	16	50327404	50327404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114.3	+1	reviewed	p.Q276R	1.000	25	0%	20	20%	7	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
NOD2	64127	genome.wustl.edu	37	16	50745796	50745796	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022162.1	+1	reviewed	p.S658	0.000	23	0%	30	36.7%	0	-	-	-	-	NULL
SALL1	6299	genome.wustl.edu	37	16	51176005	51176005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002968.2	-1	reviewed	p.H43R	1.000	269	0%	418	30.1%	9	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
CHD9	80205	genome.wustl.edu	37	16	53265692	53265692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025134.4	+1	validated	p.R836H	1.000	348	0%	328	15.5%	6	0%	benign(0.037)	tolerated(0.23)	neutral(0.044)	superfamily_SSF52540
CHD9	80205	genome.wustl.edu	37	16	53289671	53289671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025134.4	+1	validated	p.R1397C	0.993	312	0%	369	10.8%	5	0%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	superfamily_SSF52540
RBL2	5934	genome.wustl.edu	37	16	53487385	53487385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005611.3	+1	validated	p.A263V	0.997	223	0%	292	26%	1	0%	unknown(0)	tolerated(0.25)	-	NULL
AKTIP	64400	genome.wustl.edu	37	16	53528517	53528517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012398.1	-1	reviewed	p.R139C	1.000	80	0%	75	10.7%	26	3.8%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
RPGRIP1L	23322	genome.wustl.edu	37	16	53636048	53636048	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015272.2	-1	reviewed	p.V1296	0.131	66	0%	65	12.3%	6	0%	-	-	-	NULL
SLC6A2	6530	genome.wustl.edu	37	16	55705812	55705812	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000414754	+1	known	p.G18	0.016	37	0%	20	30%	0	-	-	-	-	NULL
GNAO1	2775	genome.wustl.edu	37	16	56388797	56388797	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020988.2	+1	validated	p.D299	0.661	52	0%	48	33.3%	0	-	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
NUP93	9688	genome.wustl.edu	37	16	56864491	56864491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014669.3	+1	validated	p.R327C	1.000	213	0%	249	27.7%	48	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nic96
CPNE2	221184	genome.wustl.edu	37	16	57153157	57153157	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152727.4	+1	reviewed	p.D186	0.686	38	0%	42	19%	44	0%	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ARL2BP	23568	genome.wustl.edu	37	16	57282555	57282555	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012106.3	+1	reviewed	p.Y69	1.000	112	0%	198	31.8%	53	0%	-	-	-	NULL
CCL17	6361	genome.wustl.edu	37	16	57449068	57449068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002987.2	+1	reviewed	p.T49M	0.000	84	0%	90	32.2%	2	0%	benign(0.029)	tolerated(0.11)	neutral(0.273)	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
COQ9	57017	genome.wustl.edu	37	16	57494528	57494528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020312.1	+1	provisional	p.R317C	1.000	85	0%	75	29.3%	132	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GPR56	9289	genome.wustl.edu	37	16	57691354	57691354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145771.1	+1	reviewed	p.V413I	0.997	73	0%	73	37%	116	0%	benign(0)	tolerated(1)	-	HMMPfam_7tm_2
CDH8	1006	genome.wustl.edu	37	16	62055219	62055219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001796.2	-1	reviewed	p.A30V	1.000	161	0%	218	13.8%	0	-	benign(0.417)	tolerated(0.17)	neutral(0.194)	NULL
CDH11	1009	genome.wustl.edu	37	16	64984748	64984748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001797.2	-1	reviewed	p.A606T	0.993	53	0%	48	43.8%	21	0%	possibly_damaging(0.675)	tolerated(0.19)	neutral(0.289)	NULL
CDH5	1003	genome.wustl.edu	37	16	66423332	66423332	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001795.3	+1	reviewed	p.R230*	0.996	44	0%	43	27.9%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CMTM1	113540	genome.wustl.edu	37	16	66600805	66600805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052999.3	+1	reviewed	p.R130H	0.000	63	0%	66	33.3%	5	0%	probably_damaging(0.997)	tolerated(0.19)	deleterious(0.516)	NULL
CA7	766	genome.wustl.edu	37	16	66885582	66885582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005182.2	+1	reviewed	p.P157S	1.000	33	0%	32	31.2%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
PDP2	57546	genome.wustl.edu	37	16	66919695	66919695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020786.1	+1	validated	p.A503V	1.000	37	0%	58	25.9%	11	0%	benign(0.271)	tolerated(0.99)	neutral(0.029)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
RRAD	6236	genome.wustl.edu	37	16	66957799	66957799	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128850.1	-1	validated	p.V132L	0.995	47	0%	64	25%	2	0%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_SSF52540
CES2	8824	genome.wustl.edu	37	16	66977920	66977920	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003869.4	+1	reviewed	p.E622*	0.994	11	0%	11	36.4%	33	0%	-	-	-	NULL
CBFB	865	genome.wustl.edu	37	16	67116168	67116168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022845.2	+1	reviewed	p.R151H	1.000	219	0%	296	34.8%	135	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CBF_beta
FHOD1	29109	genome.wustl.edu	37	16	67271650	67271650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013241.2	-1	reviewed	p.A222T	0.981	54	0%	127	29.1%	6	0%	possibly_damaging(0.859)	tolerated(0.08)	deleterious(0.632)	superfamily_ARM-type_fold
SLC9A5	6553	genome.wustl.edu	37	16	67289731	67289731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004594.2	+1	validated	p.R270H	1.000	11	0%	16	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_H_Exchanger
PLEKHG4	25894	genome.wustl.edu	37	16	67322085	67322085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001129727.1	+1	reviewed	p.A1079V	1.000	89	0%	126	23.8%	1	0%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
KCTD19	146212	genome.wustl.edu	37	16	67337116	67337116	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001100915.1	-1	provisional	p.D192	1.000	29	0%	48	33.3%	0	-	-	-	-	superfamily_BTB/POZ_fold
FAM65A	79567	genome.wustl.edu	37	16	67573769	67573769	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000428437	+1	known	p.L122F	0.975	173	0%	412	14.6%	12	0%	-	-	-	NULL
PSKH1	5681	genome.wustl.edu	37	16	67942888	67942888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006742.2	+1	validated	p.R79H	1.000	12	0%	18	33.3%	14	0%	benign(0.006)	tolerated(0.17)	neutral(0.059)	superfamily_Kinase_like
PSKH1	5681	genome.wustl.edu	37	16	67961307	67961307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006742.2	+1	validated	p.A346V	1.000	70	0%	65	33.8%	19	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NFATC3	4775	genome.wustl.edu	37	16	68224728	68224728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173165.1	+1	reviewed	p.P719H	1.000	135	0%	202	17.8%	66	0%	benign(0.066)	deleterious(0.03)	neutral(0.369)	NULL
ESRP2	80004	genome.wustl.edu	37	16	68265484	68265484	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024939.2	-1	validated	p.G471	0.881	22	0%	24	16.7%	29	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SLC7A6	9057	genome.wustl.edu	37	16	68330535	68330535	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001076785.1	+1	validated	p.S425	1.000	206	0%	306	27.8%	5	0%	-	-	-	HMMPfam_AA_permease
PRMT7	54496	genome.wustl.edu	37	16	68391085	68391085	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019023.2	+1	validated	p.G679	0.975	53	0%	34	20.6%	41	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CDH3	1001	genome.wustl.edu	37	16	68712444	68712444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001793.4	+1	reviewed	p.S144N	1.000	48	0%	82	12.2%	47	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NFAT5	10725	genome.wustl.edu	37	16	69660384	69660384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138713.2	+1	reviewed	p.T69I	1.000	65	0%	71	14.1%	3	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
NFAT5	10725	genome.wustl.edu	37	16	69693713	69693713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138713.2	+1	reviewed	p.T427I	1.000	134	0%	160	13.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_RHD
NFAT5	10725	genome.wustl.edu	37	16	69725885	69725885	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138713.2	+1	reviewed	p.S719	0.986	357	0%	464	34.7%	6	0%	-	-	-	NULL
WWP2	11060	genome.wustl.edu	37	16	69951622	69951622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007014.3	+1	reviewed	p.R339C	1.000	92	0%	161	32.3%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
ENSG00000205152	0	genome.wustl.edu	37	16	70265901	70265901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000378955	-1	known	p.A286V	1.000	48	0%	158	25.9%	5	0%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70975688	70975688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032821.2	-1	validated	p.G2234D	0.986	139	0%	163	17.8%	0	-	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	70989396	70989396	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032821.2	-1	validated	p.S2065	0.710	125	0%	141	9.9%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	71025217	71025217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032821.2	-1	validated	p.R1290W	0.001	302	0%	307	20.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71186595	71186595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032821.2	-1	validated	p.H270Y	1.000	126	0%	217	21.7%	2	0%	benign(0.005)	tolerated(1)	-	superfamily_PapD-like
AP1G1	164	genome.wustl.edu	37	16	71779406	71779406	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001030007.1	-1	reviewed	p.P617	0.997	224	0%	333	35.4%	29	0%	-	-	-	NULL
DHX38	9785	genome.wustl.edu	37	16	72130795	72130795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014003.3	+1	reviewed	p.R133Q	1.000	143	0%	152	28.3%	40	0%	possibly_damaging(0.516)	tolerated(0.13)	neutral(0.426)	NULL
DHX38	9785	genome.wustl.edu	37	16	72134478	72134478	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014003.3	+1	reviewed	p.R420	0.993	52	0%	55	34.5%	49	0%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72827463	72827463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006885.3	-1	reviewed	p.R3040C	1.000	111	0%	77	33.8%	32	0%	probably_damaging(1)	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZFHX3	463	genome.wustl.edu	37	16	72828024	72828024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006885.3	-1	reviewed	p.A2853T	1.000	113	0%	90	12.2%	27	0%	possibly_damaging(0.541)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72831936	72831936	+	Missense_Mutation	SNP	C	C	T	rs181722888	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006885.3	-1	reviewed	p.V1549I	1.000	214	0%	300	15.7%	5	0%	unknown(0)	-	-	HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100132068	100132068	genome.wustl.edu	37	16	72992110	72992110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001719562.2	+1	model	p.A186T	0.959	24	0%	16	31.2%	8	0%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72992858	72992858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006885.3	-1	reviewed	p.T396I	1.000	49	0%	37	13.5%	4	0%	unknown(0)	-	-	NULL
CLEC18B	497190	genome.wustl.edu	37	16	74451985	74451985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001011880.2	-1	validated	p.R143H	0.024	13	0%	15	53.3%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
GLG1	2734	genome.wustl.edu	37	16	74501663	74501663	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012201.5	-1	validated	p.G840	0.999	147	0%	189	41.3%	130	0%	-	-	-	HMMPfam_Cys_rich_FGFR
GLG1	2734	genome.wustl.edu	37	16	74537531	74537531	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012201.5	-1	validated	p.T224	0.253	108	0%	136	33.8%	69	0%	-	-	-	HMMPfam_Cys_rich_FGFR
MLKL	197259	genome.wustl.edu	37	16	74729607	74729607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152649.2	-1	validated	p.R17W	0.003	79	0%	95	23.2%	1	0%	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
WDR59	79726	genome.wustl.edu	37	16	74950050	74950050	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030581.3	-1	validated	p.H358	0.550	173	0%	210	32.4%	33	0%	-	-	-	superfamily_WD40 repeat-like
WDR59	79726	genome.wustl.edu	37	16	74990506	74990506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030581.3	-1	validated	p.R36H	1.000	170	0%	287	25.8%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
CTRB2	440387	genome.wustl.edu	37	16	75238125	75238125	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001025200.3	-1	validated	p.T242	0.000	35	0%	42	16.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
CFDP1	10428	genome.wustl.edu	37	16	75338947	75338947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006324.2	-1	validated	p.A262T	1.000	388	0%	436	28.7%	228	0.4%	possibly_damaging(0.793)	tolerated(0.28)	neutral(0.330)	HMMPfam_BCNT
CHST5	23563	genome.wustl.edu	37	16	75563643	75563643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024533.3	-1	validated	p.A214T	0.039	10	0%	17	29.4%	2	0%	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM231	79583	genome.wustl.edu	37	16	75579319	75579319	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077416.1	-1	validated	p.Y200	0.862	126	0%	236	26.3%	30	0%	-	-	-	HMMPfam_NAcGluc_Transf
ADAT1	23536	genome.wustl.edu	37	16	75646402	75646402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012091.2	-1	reviewed	p.A261V	1.000	97	0%	88	29.5%	6	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_A_deamin,HMMSmart_SM00552
KARS	3735	genome.wustl.edu	37	16	75662542	75662542	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130089.1	-1	reviewed	p.G568	0.978	34	0%	45	44.4%	575	0%	-	-	-	HMMPfam_tRNA-synt_2,superfamily_SSF55681
CNTNAP4	85445	genome.wustl.edu	37	16	76513316	76513316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138994.3	+1	validated	p.S515F	1.000	128	0%	194	20.1%	0	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases
MON1B	22879	genome.wustl.edu	37	16	77227524	77227524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014940.2	+1	validated	p.R109W	1.000	102	0%	89	28.1%	23	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Mon1
WWOX	51741	genome.wustl.edu	37	16	79245670	79245670	+	Missense_Mutation	SNP	C	C	T	rs144234059	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016373.1	+1	reviewed	p.R408W	0.096	69	0%	80	32.5%	11	0%	possibly_damaging(0.793)	deleterious(0.04)	deleterious(0.647)	NULL
ATMIN	23300	genome.wustl.edu	37	16	81078224	81078224	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015251.2	+1	validated	p.D707	1.000	113	0%	228	31.1%	73	0%	-	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81198248	81198248	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000360678	-1	known	e9+1	1.000	25	0%	33	24.2%	0	-	-	-	-	-
PLCG2	5336	genome.wustl.edu	37	16	81892729	81892729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002661.2	+1	validated	p.R147K	1.000	136	0%	166	38.6%	0	-	benign(0.09)	tolerated(0.08)	neutral(0.306)	NULL
PLCG2	5336	genome.wustl.edu	37	16	81965181	81965181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002661.2	+1	validated	p.E887D	1.000	132	0%	83	31.3%	1	0%	benign(0.001)	tolerated(0.8)	neutral(0.001)	HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729
PLCG2	5336	genome.wustl.edu	37	16	81971386	81971386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002661.2	+1	validated	p.A1026T	1.000	79	0%	85	22.4%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
ATP2C2	9914	genome.wustl.edu	37	16	84438648	84438648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000420010	+1	known	p.A59V	0.000	48	0%	35	22.9%	1	0%	-	-	-	NULL
ENSG00000248612	0	genome.wustl.edu	37	16	84494492	84494492	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508094	-1	known	NULL	0.003	51	0%	61	21.3%	0	-	-	-	-	-
CRISPLD2	83716	genome.wustl.edu	37	16	84888374	84888374	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031476.3	+1	validated	p.R216	0.975	140	0%	149	12.8%	5	0%	-	-	-	NULL
KIAA0513	9764	genome.wustl.edu	37	16	85112586	85112586	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014732.2	+1	validated	p.T293	0.139	61	0%	47	36.2%	5	0%	-	-	-	NULL
KIAA0513	9764	genome.wustl.edu	37	16	85120282	85120282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014732.2	+1	validated	p.R348H	0.983	11	0%	10	40%	1	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
COX4I1	1327	genome.wustl.edu	37	16	85838559	85838559	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001861.2	+1	reviewed	p.S30	0.827	20	0%	24	25%	1183	0%	-	-	-	HMMPfam_COX4,superfamily_Mitochondrial cytochrome c oxidase subunit IV
FOXC2	2303	genome.wustl.edu	37	16	86601361	86601361	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005251.2	+1	reviewed	p.P140	0.046	23	0%	14	42.9%	0	-	-	-	-	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
ZCCHC14	23174	genome.wustl.edu	37	16	87493648	87493648	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015144.2	-1	validated	p.S83	0.703	317	0%	278	15.8%	4	0%	-	-	-	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88697513	88697513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144604.3	+1	validated	p.R890C	1.000	20	0%	29	31%	47	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRAPPC2L	51693	genome.wustl.edu	37	16	88926368	88926368	+	Missense_Mutation	SNP	G	G	A	rs71658021		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016209.3	+1	validated	p.R121H	1.000	26	0%	35	34.3%	168	0%	benign(0.123)	tolerated(0.08)	neutral(0.310)	HMMPfam_Sedlin_N,superfamily_SNARE-like
ACSF3	197322	genome.wustl.edu	37	16	89178533	89178533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127214.1	+1	validated	p.R286W	0.690	142	0%	233	30.9%	14	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_AMP-binding,superfamily_SSF56801
CDH15	1013	genome.wustl.edu	37	16	89257749	89257749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004933.2	+1	reviewed	p.D415V	1.000	10	0%	12	33.3%	0	-	benign(0.004)	tolerated(0.5)	neutral(0.010)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ANKRD11	29123	genome.wustl.edu	37	16	89347194	89347194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013275.4	-1	validated	p.A1919V	0.999	41	0%	53	22.6%	25	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89352480	89352480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013275.4	-1	validated	p.G287C	1.000	63	0%	73	34.2%	15	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_Ankyrin repeat
ANKRD11	29123	genome.wustl.edu	37	16	89371645	89371645	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013275.4	-1	validated	p.G65	0.997	29	0%	19	26.3%	46	0%	-	-	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89383445	89383445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000378332	-1	known	p.R9W	0.896	10	0%	11	36.4%	43	0%	unknown(0)	-	-	NULL
FANCA	2175	genome.wustl.edu	37	16	89816261	89816261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000135.2	-1	reviewed	p.G1039D	0.002	37	0%	34	20.6%	44	0%	possibly_damaging(0.946)	tolerated(0.21)	neutral(0.434)	NULL
FANCA	2175	genome.wustl.edu	37	16	89857905	89857905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000135.2	-1	reviewed	p.C422Y	0.543	27	0%	36	22.2%	27	0%	benign(0)	tolerated(1)	-	NULL
VPS53	55275	genome.wustl.edu	37	17	440282	440282	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128159.1	-1	reviewed	p.C667	1.000	72	0%	112	30.4%	37	0%	-	-	-	NULL
PRPF8	10594	genome.wustl.edu	37	17	1564939	1564939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006445.3	-1	reviewed	p.A1390T	1.000	41	0%	85	37.6%	72	0%	benign(0.029)	tolerated(0.14)	neutral(0.251)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1577064	1577064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006445.3	-1	reviewed	p.R1141H	1.000	94	0%	187	17.6%	51	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1582965	1582965	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006445.3	-1	reviewed	p.R409	0.998	64	0%	202	31.2%	9	0%	-	-	-	HMMPfam_PROCN
SMYD4	114826	genome.wustl.edu	37	17	1703237	1703237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052928.2	-1	validated	p.D484G	0.254	45	0%	96	33.3%	13	0%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_SET domain
SRR	63826	genome.wustl.edu	37	17	2218973	2218973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021947.1	+1	provisional	p.R40H	1.000	250	0%	534	30.5%	12	0%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
SGSM2	9905	genome.wustl.edu	37	17	2268581	2268581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014853.2	+1	validated	p.R412W	1.000	14	0%	11	72.7%	26	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
SGSM2	9905	genome.wustl.edu	37	17	2282422	2282422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014853.2	+1	validated	p.A998T	1.000	24	0%	32	34.4%	79	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
PAFAH1B1	5048	genome.wustl.edu	37	17	2569384	2569384	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000430.3	+1	reviewed	p.K64	1.000	12	0%	23	30.4%	40	0%	-	-	-	superfamily_WD40 repeat-like,superfamily_Lissencephaly-1 protein (Lis-1 PAF-AH alpha) N-terminal domain
C17orf85	55421	genome.wustl.edu	37	17	3724576	3724576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001114118.1	-1	provisional	p.V323I	1.000	81	0%	125	15.2%	41	0%	benign(0.016)	tolerated(0.57)	neutral(0.007)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3920905	3920905	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015113.3	-1	validated	p.S2587	0.927	116	0.9%	129	29.5%	25	0%	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3926040	3926040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015113.3	-1	validated	p.T2392N	1.000	182	0%	240	10.8%	16	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3984769	3984769	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015113.3	-1	validated	p.G910	0.373	196	0%	188	34%	6	0%	-	-	-	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4083021	4083021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016376.3	-1	validated	p.A799T	0.918	248	0.4%	204	34.3%	16	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKFY1	51479	genome.wustl.edu	37	17	4084624	4084624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016376.3	-1	validated	p.G723D	0.176	103	0%	87	36.8%	9	0%	benign(0.009)	tolerated(1)	neutral(0.001)	superfamily_ANK
ANKFY1	51479	genome.wustl.edu	37	17	4092733	4092733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016376.3	-1	validated	p.A472T	1.000	10	0%	12	41.7%	12	0%	possibly_damaging(0.679)	tolerated(0.12)	deleterious(0.502)	HMMPfam_Ank,superfamily_ANK
ANKFY1	51479	genome.wustl.edu	37	17	4111297	4111297	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016376.3	-1	validated	p.P221	0.574	102	0%	206	27.2%	16	6.2%	-	-	-	superfamily_ANK
MYBBP1A	10514	genome.wustl.edu	37	17	4443105	4443105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001105538.1	-1	validated	p.A1198T	0.002	52	0%	32	40.6%	63	0%	unknown(0)	deleterious(0)	-	NULL
PELP1	27043	genome.wustl.edu	37	17	4575234	4575234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014389.2	-1	validated	p.R1018C	0.001	12	0%	13	46.2%	167	0%	unknown(0)	deleterious(0.04)	-	NULL
ZMYND15	84225	genome.wustl.edu	37	17	4644928	4644928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136046.1	+1	provisional	p.G215D	1.000	123	0%	169	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLD2	5338	genome.wustl.edu	37	17	4722450	4722450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002663.3	+1	validated	p.V749I	0.662	21	0%	47	23.4%	25	0%	benign(0.002)	tolerated(0.43)	neutral(0.013)	superfamily_Phospholipase D/nuclease
GP1BA	2811	genome.wustl.edu	37	17	4836509	4836509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000173.5	+1	reviewed	p.P204S	0.840	112	0%	263	30%	3	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_SSF52058
KIF1C	10749	genome.wustl.edu	37	17	4927038	4927038	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006612.5	+1	validated	p.R968	1.000	23	0%	27	48.1%	97	0%	-	-	-	NULL
KIF1C	10749	genome.wustl.edu	37	17	4927348	4927348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006612.5	+1	validated	p.R1072W	0.985	23	0%	44	20.5%	120	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
USP6	9098	genome.wustl.edu	37	17	5042665	5042665	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004505.2	+1	validated	p.R398	0.135	22	0%	32	43.8%	0	-	-	-	-	NULL
NUP88	4927	genome.wustl.edu	37	17	5298224	5298224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002532.3	-1	reviewed	p.P457S	1.000	101	0%	190	14.2%	101	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Nup88
DHX33	56919	genome.wustl.edu	37	17	5347654	5347654	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020162.2	-1	reviewed	p.C665	1.000	35	0%	44	54.5%	19	0%	-	-	-	HMMPfam_DUF1605
AIPL1	23746	genome.wustl.edu	37	17	6328970	6328970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014336.3	-1	reviewed	p.R322H	1.000	24	0%	30	26.7%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_SSF48452
FAM64A	54478	genome.wustl.edu	37	17	6348605	6348605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019013.1	+1	provisional	p.V59I	0.949	66	0%	34	35.3%	37	0%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_DUF1466
PITPNM3	83394	genome.wustl.edu	37	17	6358774	6358774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031220.3	-1	reviewed	p.A937T	0.065	9	0.000	5	0.800	2	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
KIAA0753	9851	genome.wustl.edu	37	17	6515255	6515255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014804.2	-1	validated	p.A510V	0.000	339	0%	353	30.6%	12	0%	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
SLC13A5	284111	genome.wustl.edu	37	17	6616598	6616598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177550.3	-1	validated	p.V19I	0.212	38	0%	43	20.9%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Na_sulph_symp
TEKT1	83659	genome.wustl.edu	37	17	6704171	6704171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_053285.1	-1	reviewed	p.T315M	0.946	316	0%	214	14.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Tektin
ALOX12	239	genome.wustl.edu	37	17	6913351	6913351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000697.2	+1	validated	p.T573M	0.960	55	0%	79	21.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
BCL6B	255877	genome.wustl.edu	37	17	6929886	6929886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181844.3	+1	validated	p.R334W	1.000	36	0%	71	16.9%	2	0%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ASGR1	432	genome.wustl.edu	37	17	7077112	7077112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001671.3	-1	validated	p.G248R	1.000	62	0%	59	44.1%	13	0%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
YBX2	51087	genome.wustl.edu	37	17	7193313	7193313	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015982.3	-1	validated	p.P274	0.994	37	0%	65	52.3%	6	0%	-	-	-	NULL
NEURL4	84461	genome.wustl.edu	37	17	7221432	7221432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032442.2	-1	validated	p.E1338K	1.000	35	0%	65	10.8%	30	0%	benign(0.29)	tolerated(0.15)	neutral(0.331)	NULL
ACAP1	9744	genome.wustl.edu	37	17	7249741	7249741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014716.3	+1	validated	p.R313H	1.000	82	0%	193	45.1%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
NLGN2	57555	genome.wustl.edu	37	17	7318840	7318840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020795.2	+1	reviewed	p.A350T	1.000	14	0%	51	33.3%	24	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_COesterase,superfamily_SSF53474
C17orf74	201243	genome.wustl.edu	37	17	7329798	7329798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175734.4	+1	validated	p.R163H	0.000	57	0%	139	41.7%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
ZBTB4	57659	genome.wustl.edu	37	17	7369189	7369189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128833.1	-1	validated	p.C311Y	1.000	25	0%	42	31%	7	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POLR2A	5430	genome.wustl.edu	37	17	7401440	7401440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000937.3	+1	validated	p.A416T	1.000	84	0%	120	22.5%	67	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb1_2,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7404097	7404097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000937.3	+1	validated	p.R604H	1.000	132	0%	134	29.9%	87	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_RNA_pol_Rpb1_3,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7404926	7404926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000937.3	+1	validated	p.R743C	1.000	134	0%	147	32%	109	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RNA_pol_Rpb1_4,superfamily_SSF64484
TNFSF12	8742	genome.wustl.edu	37	17	7460485	7460485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003809.2	+1	reviewed	p.R190C	1.000	70	0%	98	39.8%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
ATP1B2	482	genome.wustl.edu	37	17	7559197	7559197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001678.3	+1	reviewed	p.R286H	0.997	53	0%	112	26.8%	1	0%	benign(0.228)	tolerated(0.18)	neutral(0.079)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7674138	7674138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020877.2	+1	validated	p.R1417C	0.901	158	0%	218	40.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7700778	7700778	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020877.2	+1	validated	p.S2670	0.485	284	0%	299	15.1%	0	-	-	-	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7797818	7797818	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005271.2	+1	reviewed	p.G447fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
GUCY2D	3000	genome.wustl.edu	37	17	7915794	7915794	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000180.3	+1	reviewed	p.G661	0.021	40	0%	67	25.4%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ALOXE3	59344	genome.wustl.edu	37	17	8017838	8017838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021628.2	-1	reviewed	p.T215I	1.000	52	0%	120	36.7%	0	-	benign(0.212)	tolerated(0.48)	neutral(0.031)	superfamily_Lipoxygenase
PER1	5187	genome.wustl.edu	37	17	8044491	8044491	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002616.2	-1	reviewed	p.G1256	0.028	125	0%	170	31.8%	47	0%	-	-	-	NULL
PFAS	5198	genome.wustl.edu	37	17	8160223	8160223	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012393.2	+1	reviewed	p.R339	0.000	59	0%	43	46.5%	17	0%	-	-	-	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
ARHGEF15	22899	genome.wustl.edu	37	17	8218584	8218584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173728.2	+1	reviewed	p.R417C	1.000	29	0%	29	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DH-domain
ARHGEF15	22899	genome.wustl.edu	37	17	8222670	8222670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173728.2	+1	reviewed	p.G743C	0.885	78	0%	92	32.6%	1	0%	benign(0.382)	deleterious(0.03)	deleterious(0.486)	NULL
MYH10	4628	genome.wustl.edu	37	17	8381685	8381685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005964.1	-1	validated	p.R1862C	1.000	69	0%	60	11.7%	212	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
GLP2R	9340	genome.wustl.edu	37	17	9760824	9760824	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000458005	+1	known	p.T85M	0.000	116	0%	135	37.8%	0	-	-	-	-	HMMPfam_7tm_2
MYH13	8735	genome.wustl.edu	37	17	10261057	10261057	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003802.2	-1	validated	p.R245*	0.999	184	0%	191	21.5%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH4	4622	genome.wustl.edu	37	17	10353804	10353804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017533.2	-1	validated	p.A1383T	1.000	199	0%	153	25.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10356165	10356165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017533.2	-1	validated	p.A1066T	1.000	275	0%	361	27.7%	0	-	benign(0)	tolerated(1)	-	NULL
MYH4	4622	genome.wustl.edu	37	17	10358595	10358595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017533.2	-1	validated	p.A731V	1.000	106	0%	149	30.9%	0	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10415204	10415204	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000379814	-1	known	e12+2	1.000	437	0%	387	25.3%	0	-	-	-	-	-
DNAH9	1770	genome.wustl.edu	37	17	11648136	11648136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001372.3	+1	reviewed	p.R2045Q	1.000	75	0%	72	12.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11837215	11837215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001372.3	+1	reviewed	p.R4106C	1.000	66	0%	69	11.6%	1	0%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_Dynein_heavy
DNAH9	1770	genome.wustl.edu	37	17	11845739	11845739	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001372.3	+1	reviewed	p.G4260	0.251	93	0%	118	28.8%	0	-	-	-	-	HMMPfam_Dynein_heavy
MYOCD	93649	genome.wustl.edu	37	17	12639539	12639539	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153604.2	+1	reviewed	p.S159	0.023	353	0%	408	33.8%	0	-	-	-	-	NULL
ARHGAP44	9912	genome.wustl.edu	37	17	12862159	12862159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014859.4	+1	validated	p.R490W	1.000	38	0%	37	40.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ELAC2	60528	genome.wustl.edu	37	17	12903519	12903519	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000446899	-1	known	p.R239C	0.021	55	0%	31	22.6%	62	0%	-	-	-	NULL
ZNF286A	57335	genome.wustl.edu	37	17	15619643	15619643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130842.1	+1	validated	p.S202Y	0.002	72	0%	180	29.4%	8	0%	benign(0.048)	deleterious(0.02)	neutral(0.386)	NULL
ZNF286A	57335	genome.wustl.edu	37	17	15620240	15620240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130842.1	+1	validated	p.Q401R	0.999	66	0%	147	32.7%	10	0%	probably_damaging(0.98)	tolerated(0.13)	deleterious(0.676)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NCOR1	9611	genome.wustl.edu	37	17	15971349	15971349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006311.2	-1	reviewed	p.P1534S	1.000	66	0%	112	36.6%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCOR1	9611	genome.wustl.edu	37	17	15989674	15989674	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006311.2	-1	reviewed	p.P1033	0.077	158	0%	215	33.5%	17	0%	-	-	-	NULL
FAM211A	388341	genome.wustl.edu	37	17	16347074	16347074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113567.1	-1	validated	p.R288H	1.000	27	0%	29	13.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
CCDC144A	9720	genome.wustl.edu	37	17	16593739	16593739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014695.1	+1	provisional	p.R9W	0.001	27	0%	34	44.1%	0	-	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	NULL
FLCN	201163	genome.wustl.edu	37	17	17125874	17125874	+	Silent	SNP	C	C	T	rs186366202	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144997.5	-1	reviewed	p.S240	0.001	13	0%	21	28.6%	15	0%	-	-	-	NULL
RAI1	10743	genome.wustl.edu	37	17	17696762	17696762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030665.3	+1	reviewed	p.R167Q	1.000	21	0%	47	25.5%	14	0%	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	NULL
RAI1	10743	genome.wustl.edu	37	17	17701432	17701432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030665.3	+1	reviewed	p.R1724W	0.967	28	0%	36	19.4%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SREBF1	6720	genome.wustl.edu	37	17	17721180	17721180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005291.2	-1	reviewed	p.V442M	0.258	15	0%	24	20.8%	137	0%	possibly_damaging(0.682)	tolerated(0.24)	neutral(0.280)	NULL
TOM1L2	146691	genome.wustl.edu	37	17	17786070	17786070	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001082968.1	-1	validated	p.P203	0.005	30	0%	34	20.6%	8	0%	-	-	-	superfamily_GAT-like domain
LRRC48	83450	genome.wustl.edu	37	17	17919900	17919900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130090.1	+1	validated	p.R496H	1.000	71	2.8%	46	32.6%	19	0%	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	NULL
ATPAF2	91647	genome.wustl.edu	37	17	17925168	17925168	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145691.3	-1	reviewed	p.Y169	0.019	60	0%	60	46.7%	58	0%	-	-	-	HMMPfam_ATP12
LLGL1	3996	genome.wustl.edu	37	17	18144999	18144999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004140.3	+1	reviewed	p.A913T	1.000	23	0%	43	41.9%	78	0%	possibly_damaging(0.69)	tolerated(0.19)	neutral(0.296)	NULL
TOP3A	7156	genome.wustl.edu	37	17	18196110	18196110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004618.3	-1	reviewed	p.T377M	0.001	44	0%	111	13.5%	26	0%	benign(0.291)	tolerated(0.13)	neutral(0.342)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac
TOP3A	7156	genome.wustl.edu	37	17	18205232	18205232	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000412083	-1	known	p.G274S	0.082	26	0%	91	26.4%	23	0%	-	-	-	superfamily_Prokaryotic type I DNA topoisomerase,HMMPfam_Topoisom_bac
FAM18B1	51030	genome.wustl.edu	37	17	18692706	18692706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016078.4	+1	predicted	p.A18V	0.995	263	0%	335	33.4%	35	0%	benign(0.017)	tolerated(0.13)	neutral(0.253)	NULL
FAM18B1	51030	genome.wustl.edu	37	17	18707452	18707452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016078.4	+1	predicted	p.A155V	0.997	129	0%	139	34.5%	76	0%	possibly_damaging(0.821)	tolerated(0.27)	neutral(0.344)	HMMPfam_DUF846
PRPSAP2	5636	genome.wustl.edu	37	17	18814472	18814472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002767.2	+1	reviewed	p.A214V	1.000	48	0%	72	29.2%	70	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	superfamily_SSF53271
SLC5A10	125206	genome.wustl.edu	37	17	18874506	18874506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152351.3	+1	validated	p.A274V	1.000	21	0%	21	38.1%	19	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_SSF
FAM83G	644815	genome.wustl.edu	37	17	18891621	18891621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039999.2	-1	validated	p.S210I	0.837	29	0%	26	34.6%	12	0%	benign(0.15)	tolerated(0.06)	neutral(0.336)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
MAPK7	5598	genome.wustl.edu	37	17	19283195	19283195	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002749.3	+1	reviewed	p.H111	0.921	116	0%	163	30.1%	28	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAPK7	5598	genome.wustl.edu	37	17	19284526	19284526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002749.3	+1	reviewed	p.R335H	1.000	55	0%	37	27%	30	0%	unknown(0)	deleterious(0)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RNF112	7732	genome.wustl.edu	37	17	19317773	19317773	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007148.4	+1	reviewed	p.H296	0.019	62	0%	77	29.9%	0	-	-	-	-	superfamily_SSF52540
ALDH3A2	224	genome.wustl.edu	37	17	19568332	19568332	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031806.1	+1	reviewed	p.T393	0.000	109	0%	120	31.7%	136	0%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ULK2	9706	genome.wustl.edu	37	17	19700871	19700871	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142610.1	-1	reviewed	p.P549	0.395	91	0%	82	32.9%	21	0%	-	-	-	NULL
SPECC1	92521	genome.wustl.edu	37	17	20107857	20107857	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033553.1	+1	validated	p.A165	0.250	207	0.5%	255	29.4%	0	-	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20224714	20224714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000425519	+1	known	p.V29I	0.002	55	0%	38	28.9%	0	-	unknown(0)	deleterious(0)	-	NULL
FAM27L	284123	genome.wustl.edu	37	17	21825535	21825535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000315762	+1	known	p.A12V	0.002	38	0%	46	13%	0	-	benign(0.043)	-	-	NULL
LOC440419	440419	genome.wustl.edu	37	17	25746753	25746753	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_040504.2	+1	model	NULL	0.429	23	0%	18	38.9%	0	-	-	-	-	-
SEBOX	645832	genome.wustl.edu	37	17	26691538	26691538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080837.2	-1	validated	p.P135S	0.000	14	0%	39	30.8%	0	-	benign(0.002)	tolerated(0.72)	neutral(0.002)	NULL
SLC13A2	9058	genome.wustl.edu	37	17	26816243	26816243	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003984.3	+1	validated	p.C38	0.969	49	0%	36	22.2%	0	-	-	-	-	HMMPfam_Na_sulph_symp
SLC13A2	9058	genome.wustl.edu	37	17	26817588	26817588	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003984.3	+1	validated	p.I116	0.099	87	0%	82	31.7%	0	-	-	-	-	HMMPfam_Na_sulph_symp
SLC13A2	9058	genome.wustl.edu	37	17	26817726	26817726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003984.3	+1	validated	p.L126M	0.995	51	0%	57	24.6%	0	-	possibly_damaging(0.703)	deleterious(0.03)	deleterious(0.617)	HMMPfam_Na_sulph_symp
PIGS	94005	genome.wustl.edu	37	17	26881881	26881881	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033198.3	-1	reviewed	p.D460	0.997	33	0%	67	34.3%	83	0%	-	-	-	HMMPfam_PIG-S
DHRS13	147015	genome.wustl.edu	37	17	27225750	27225750	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144683.3	-1	validated	p.Y281*	0.998	24	0%	31	38.7%	43	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
PHF12	57649	genome.wustl.edu	37	17	27240238	27240238	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033561.1	-1	validated	p.Q451*	1.000	68	0%	101	35.6%	42	0%	-	-	-	NULL
MYO18A	399687	genome.wustl.edu	37	17	27493374	27493374	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_078471.3	-1	validated	p.E195	1.000	17	0%	26	30.8%	5	0%	-	-	-	NULL
NUFIP2	57532	genome.wustl.edu	37	17	27613763	27613763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020772.2	-1	validated	p.G417R	1.000	67	0%	118	28.8%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAOK1	57551	genome.wustl.edu	37	17	27857638	27857638	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020791.1	+1	validated	e17+1	1.000	36	0%	82	39%	0	-	-	-	-	-
ABHD15	116236	genome.wustl.edu	37	17	27889776	27889776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198147.2	-1	validated	p.S404G	1.000	11	0%	20	35%	1	0%	possibly_damaging(0.749)	deleterious(0.05)	deleterious(0.621)	superfamily_alpha/beta-Hydrolases
ANKRD13B	124930	genome.wustl.edu	37	17	27939261	27939261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152345.4	+1	validated	p.R410C	1.000	37	0%	26	19.2%	19	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CRLF3	51379	genome.wustl.edu	37	17	29124346	29124346	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015986.3	-1	validated	p.S136	0.996	120	0%	194	38.1%	8	0%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29592288	29592288	+	Missense_Mutation	SNP	C	C	T	rs185660700	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042492.2	+1	reviewed	p.T1589M	1.000	328	0%	360	25.8%	11	0%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	HMMSmart_SM00516
NF1	4763	genome.wustl.edu	37	17	29654857	29654857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042492.2	+1	reviewed	p.R1870Q	1.000	97	0%	135	32.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NF1	4763	genome.wustl.edu	37	17	29676253	29676253	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042492.2	+1	reviewed	p.S2435	0.999	69	0%	70	34.3%	26	0%	-	-	-	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29848964	29848964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032932.3	+1	validated	p.V264M	0.008	34	0%	32	37.5%	35	0%	benign(0.003)	tolerated(0.37)	neutral(0.019)	NULL
SUZ12	23512	genome.wustl.edu	37	17	30310074	30310074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015355.2	+1	reviewed	p.C325Y	1.000	205	0%	297	26.6%	58	0%	possibly_damaging(0.481)	tolerated(1)	neutral(0.160)	NULL
C17orf75	64149	genome.wustl.edu	37	17	30664966	30664966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022344.2	-1	validated	p.L167I	1.000	10	0%	26	23.1%	39	0%	possibly_damaging(0.866)	tolerated(0.2)	neutral(0.385)	NULL
MYO1D	4642	genome.wustl.edu	37	17	31105564	31105564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015194.1	-1	provisional	p.A111V	1.000	123	0%	150	30.7%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCL1	6346	genome.wustl.edu	37	17	32688898	32688898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002981.1	-1	reviewed	p.R32G	0.016	340	0%	297	29.3%	0	-	benign(0.318)	tolerated(0.29)	neutral(0.129)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
LIG3	3980	genome.wustl.edu	37	17	33310369	33310369	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013975.2	+1	reviewed	p.G115	0.000	38	0%	70	27.1%	17	0%	-	-	-	HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LIG3	3980	genome.wustl.edu	37	17	33316603	33316603	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013975.2	+1	reviewed	p.C270	1.000	82	0%	114	35.1%	19	0%	-	-	-	HMMPfam_DNA_ligase_A_N
LIG3	3980	genome.wustl.edu	37	17	33319590	33319590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013975.2	+1	reviewed	p.R445H	0.983	112	0%	147	15%	31	0%	possibly_damaging(0.801)	tolerated(0.07)	deleterious(0.621)	NULL
SLC35G3	146861	genome.wustl.edu	37	17	33520727	33520727	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152462.2	-1	validated	p.G200	0.998	131	0%	133	33.8%	0	-	-	-	-	NULL
SLC35G3	146861	genome.wustl.edu	37	17	33521128	33521128	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152462.2	-1	validated	p.L67	0.998	89	0%	110	42.7%	0	-	-	-	-	HMMPfam_DUF6
SLFN12L	100506736	genome.wustl.edu	37	17	33802266	33802266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145027.1	-1	validated	p.Q510H	0.003	95	0%	151	17.9%	0	-	possibly_damaging(0.71)	tolerated(0.45)	neutral(0.269)	NULL
C17orf66	256957	genome.wustl.edu	37	17	34183796	34183796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152781.2	-1	validated	p.A389V	0.998	100	0%	89	29.2%	0	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	superfamily_ARM repeat
CCL5	6352	genome.wustl.edu	37	17	34207261	34207261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002985.2	-1	reviewed	p.L17I	0.542	18	0%	20	30%	35	2.8%	benign(0.119)	tolerated(0.14)	neutral(0.259)	NULL
ENSG00000248695	0	genome.wustl.edu	37	17	34236605	34236605	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000506920	-1	known	NULL	0.000	30	0%	35	28.6%	1	0%	-	-	-	-
RDM1	201299	genome.wustl.edu	37	17	34257090	34257090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145654.3	-1	reviewed	p.S89F	0.248	216	0%	258	29.8%	8	0%	possibly_damaging(0.747)	deleterious(0.04)	deleterious(0.623)	superfamily_dsRNA-binding domain-like
MYO19	80179	genome.wustl.edu	37	17	34861202	34861202	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000431794	-1	known	p.T613	0.997	45	0%	28	28.6%	51	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TADA2A	6871	genome.wustl.edu	37	17	35783659	35783659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001488.3	+1	reviewed	p.E26K	1.000	119	0%	179	24.6%	19	0%	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	NULL
DUSP14	11072	genome.wustl.edu	37	17	35872424	35872424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007026.2	+1	validated	p.R17Q	1.000	44	0%	47	27.7%	35	0%	possibly_damaging(0.478)	tolerated(0.36)	neutral(0.178)	NULL
SYNRG	11276	genome.wustl.edu	37	17	35913590	35913590	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007247.4	-1	reviewed	p.Y745	0.073	86	0%	109	31.2%	22	0%	-	-	-	NULL
DDX52	11056	genome.wustl.edu	37	17	35979883	35979883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007010.2	-1	validated	p.V527I	1.000	140	0%	202	13.4%	86	0%	benign(0)	tolerated(1)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MLLT6	4302	genome.wustl.edu	37	17	36876982	36876982	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005937.3	+1	validated	p.S808	0.987	4	0.000	7	0.571	23	0%	-	-	-	NULL
C17orf98	388381	genome.wustl.edu	37	17	36997543	36997543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080465.2	-1	validated	p.P34S	0.996	32	0%	89	19.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPL19	6143	genome.wustl.edu	37	17	37359247	37359247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000981.3	+1	reviewed	p.R81W	1.000	63	1.6%	106	33%	6781	0%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Ribosomal_L19e,superfamily_Ribosomal protein L19 (L19e)
PGAP3	93210	genome.wustl.edu	37	17	37829317	37829317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033419.3	-1	validated	p.V296I	0.996	22	0%	22	40.9%	19	0%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Per1
GRB7	2886	genome.wustl.edu	37	17	37901173	37901173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001030002.1	+1	reviewed	p.R316Q	0.696	15	0%	20	40%	25	0%	possibly_damaging(0.849)	deleterious(0.01)	deleterious(0.732)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GRB7	2886	genome.wustl.edu	37	17	37901539	37901539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001030002.1	+1	reviewed	p.R352H	1.000	18	0%	27	37%	36	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
PSMD3	5709	genome.wustl.edu	37	17	38140673	38140673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002809.2	+1	reviewed	p.A116V	1.000	110	0%	110	14.5%	290	0%	benign(0)	tolerated(1)	-	superfamily_TPR-like
MED24	9862	genome.wustl.edu	37	17	38178256	38178256	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014815.3	-1	reviewed	p.R859*	1.000	37	0%	47	31.9%	175	0%	-	-	-	NULL
ENSG00000246237	0	genome.wustl.edu	37	17	38209477	38209477	+	RNA	SNP	C	C	T	rs189824593	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000501516	+1	novel	NULL	0.001	24	0%	51	35.3%	0	-	-	-	-	-
THRA	7067	genome.wustl.edu	37	17	38233855	38233855	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003250.4	+1	reviewed	p.G72	1.000	73	0%	136	30.9%	61	0%	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
KRT25	147183	genome.wustl.edu	37	17	38910718	38910718	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181534.3	-1	reviewed	p.I144	0.977	175	0%	146	32.2%	0	-	-	-	-	HMMPfam_Filament
KRTAP9-2	83899	genome.wustl.edu	37	17	39383019	39383019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031961.2	+1	reviewed	p.C38Y	1.000	229	0%	252	26.6%	0	-	unknown(0)	tolerated(0.08)	-	HMMPfam_Keratin_B2
KRT35	3886	genome.wustl.edu	37	17	39637004	39637004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002280.4	-1	reviewed	p.R116C	1.000	113	0%	89	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT36	8689	genome.wustl.edu	37	17	39646105	39646105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003771.4	-1	reviewed	p.Q4H	0.001	34	0%	31	29%	0	-	possibly_damaging(0.685)	deleterious(0.02)	deleterious(0.627)	NULL
KRT19	3880	genome.wustl.edu	37	17	39680441	39680441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002276.4	-1	reviewed	p.R301H	1.000	30	0%	24	33.3%	534	0.1%	possibly_damaging(0.812)	deleterious(0.01)	deleterious(0.711)	superfamily_Prefoldin,HMMPfam_Filament
KRT14	3861	genome.wustl.edu	37	17	39740655	39740655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000526.4	-1	reviewed	p.E207K	1.000	49	0%	64	26.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Filament
KRT16	3868	genome.wustl.edu	37	17	39766800	39766800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005557.3	-1	reviewed	p.A355S	1.000	162	0%	209	35.9%	2	0%	benign(0.094)	tolerated(0.74)	neutral(0.009)	HMMPfam_Filament
GAST	2520	genome.wustl.edu	37	17	39871735	39871735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000805.3	+1	reviewed	p.A16V	0.955	185	0%	180	32.2%	0	-	benign(0.355)	deleterious(0.02)	deleterious(0.495)	HMMPfam_Gastrin
JUP	3728	genome.wustl.edu	37	17	39923762	39923762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002230.2	-1	reviewed	p.A260T	0.999	27	0%	44	31.8%	216	0%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMSmart_ARM,superfamily_ARM-type_fold
NT5C3L	115024	genome.wustl.edu	37	17	39991473	39991473	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052935.4	-1	validated	p.R47*	0.999	36	0%	93	35.5%	89	0%	-	-	-	HMMPfam_UMPH-1,superfamily_HAD-like
KAT2A	2648	genome.wustl.edu	37	17	40269557	40269557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021078.2	-1	validated	p.R496C	1.000	16	0%	12	41.7%	24	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
STAT3	6774	genome.wustl.edu	37	17	40475133	40475133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139276.2	-1	reviewed	p.R593W	1.000	106	0%	111	33.3%	61	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,superfamily_SH2 domain
ATP6V0A1	535	genome.wustl.edu	37	17	40613029	40613029	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130020.1	+1	reviewed	p.D39	0.998	261	0%	403	15.9%	13	0%	-	-	-	HMMPfam_V_ATPase_I
ATP6V0A1	535	genome.wustl.edu	37	17	40647725	40647725	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130020.1	+1	reviewed	p.G524	1.000	96	0%	80	18.8%	24	0%	-	-	-	HMMPfam_V_ATPase_I
NAGLU	4669	genome.wustl.edu	37	17	40689421	40689421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000263.3	+1	reviewed	p.R130H	1.000	8	0.000	14	0.357	8	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_NAGLU
COASY	80347	genome.wustl.edu	37	17	40716017	40716017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042532.2	+1	validated	p.R276C	0.996	30	0%	28	35.7%	123	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_transf_2,superfamily_SSF52374
TUBG1	7283	genome.wustl.edu	37	17	40766399	40766399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001070.4	+1	reviewed	p.N322S	1.000	40	0%	62	32.3%	138	0.7%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
CNTNAP1	8506	genome.wustl.edu	37	17	40847574	40847574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003632.2	+1	reviewed	p.R1010C	1.000	93	0%	147	34%	3	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_ConA_like_lec_gl
EZH1	2145	genome.wustl.edu	37	17	40854918	40854918	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001991.3	-1	validated	p.G720	0.006	119	0%	141	28.4%	11	0%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
VPS25	84313	genome.wustl.edu	37	17	40926686	40926686	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032353.2	+1	provisional	p.I74	1.000	63	0%	126	35.7%	127	0%	-	-	-	"HMMPfam_ESCRT-II,superfamily_""Winged helix"" DNA-binding domain"
ETV4	2118	genome.wustl.edu	37	17	41610054	41610054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001079675.1	-1	validated	p.A267T	0.995	92	0%	131	13%	2	0%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_ETS_PEA3_N
SOST	50964	genome.wustl.edu	37	17	41836027	41836027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025237.2	-1	reviewed	p.A28V	0.998	47	0%	53	22.6%	0	-	benign(0.002)	tolerated(0.25)	neutral(0.037)	HMMPfam_Sclerostin
MPP2	4355	genome.wustl.edu	37	17	41959839	41959839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005374.3	-1	reviewed	p.A165V	0.999	49	0%	44	29.5%	3	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
HDAC5	10014	genome.wustl.edu	37	17	42158219	42158219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001015053.1	-1	reviewed	p.A881V	1.000	37	0%	30	60%	35	0%	benign(0.014)	tolerated(0.47)	neutral(0.011)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
UBTF	7343	genome.wustl.edu	37	17	42287084	42287084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014233.2	-1	validated	p.M548I	1.000	23	0%	48	39.6%	182	0%	possibly_damaging(0.786)	tolerated(0.55)	neutral(0.301)	HMMSmart_SM00398,superfamily_HMG-box
GPATCH8	23131	genome.wustl.edu	37	17	42477038	42477038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002909.1	-1	validated	p.R803W	0.498	94	1.1%	156	31.4%	21	0%	unknown(0)	deleterious(0)	-	NULL
GJC1	10052	genome.wustl.edu	37	17	42882586	42882586	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080383.1	-1	reviewed	p.G200	1.000	184	0%	303	38%	1	0%	-	-	-	HMMPfam_Connexin_CCC
EFTUD2	9343	genome.wustl.edu	37	17	42937315	42937315	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004247.3	-1	validated	p.G606	0.516	92	0%	87	49.4%	113	0%	-	-	-	superfamily_EFG_III_V
CCDC103	388389	genome.wustl.edu	37	17	42980013	42980014	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_213607.1	+1	provisional	p.E190fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PLCD3	113026	genome.wustl.edu	37	17	43196221	43196221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000322765	-1	known	p.A292T	0.997	11	0%	11	45.5%	13	0%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_efhand_like,superfamily_EF-hand
FMNL1	752	genome.wustl.edu	37	17	43322646	43322646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005892.3	+1	reviewed	p.V919M	0.969	43	0%	60	11.7%	7	0%	unknown(0)	tolerated(0.09)	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PLEKHM1	9842	genome.wustl.edu	37	17	43530861	43530861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014798.2	-1	reviewed	p.A786V	0.923	52	0%	103	25.2%	13	0%	possibly_damaging(0.851)	deleterious(0.02)	deleterious(0.710)	superfamily_SSF50729
LOC644253	644253	genome.wustl.edu	37	17	44321681	44321681	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001719157.2	+1	model	p.R180	0.994	32	0%	53	22.6%	0	-	-	-	-	superfamily_SH3-domain
LOC644253	644253	genome.wustl.edu	37	17	44322216	44322216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001719157.2	+1	model	p.R359C	0.998	38	0%	93	29%	0	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
LRRC37A2	474170	genome.wustl.edu	37	17	44618188	44618188	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006607.2	+1	validated	p.T998	0.012	383	0%	682	13.2%	3	0%	-	-	-	superfamily_SSF52058
ITGB3	3690	genome.wustl.edu	37	17	45364523	45364523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000212.2	+1	reviewed	p.A289T	1.000	94	0%	158	12.7%	1	0%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
C17orf57	124989	genome.wustl.edu	37	17	45468923	45468923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152347.3	+1	provisional	p.I568T	0.047	80	0%	155	31.6%	0	-	possibly_damaging(0.786)	tolerated(0.15)	deleterious(0.535)	superfamily_EF-hand
NPEPPS	9520	genome.wustl.edu	37	17	45696384	45696384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006310.3	+1	reviewed	p.R805C	1.000	51	0%	89	21.3%	106	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRPL10	124995	genome.wustl.edu	37	17	45901589	45901589	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145255.2	-1	reviewed	p.D256	0.070	55	1.8%	81	29.6%	111	0%	-	-	-	NULL
SP6	80320	genome.wustl.edu	37	17	45925778	45925778	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199262.2	-1	validated	p.C6	0.998	7	0.000	7	0.714	0	-	-	-	-	NULL
SP2	6668	genome.wustl.edu	37	17	46002461	46002461	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003110.5	+1	reviewed	e5+2	1.000	42	0%	39	28.2%	0	-	-	-	-	-
CDK5RAP3	80279	genome.wustl.edu	37	17	46052882	46052882	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_176096.1	+1	reviewed	p.G172	0.982	67	0%	82	28%	83	0%	-	-	-	HMMPfam_DUF773
COPZ2	51226	genome.wustl.edu	37	17	46109558	46109558	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016429.2	-1	reviewed	p.E152*	1.000	6	0.000	20	0.350	8	0%	benign(0.02)	tolerated(0.3)	neutral(0.030)	NULL
MIR1203	100302211	genome.wustl.edu	37	17	46233800	46233800	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408812	-1	known	NULL	0.955	55	0%	43	30.2%	0	-	-	-	-	-
CALCOCO2	10241	genome.wustl.edu	37	17	46939664	46939664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005831.3	+1	reviewed	p.P391T	0.033	145	0%	255	35.3%	40	0%	benign(0.006)	tolerated(0.06)	neutral(0.323)	HMMPfam_CALCOCO1
GIP	2695	genome.wustl.edu	37	17	47041841	47041841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004123.2	-1	reviewed	p.A30T	0.003	59	0%	87	10.3%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
ZNF652	22834	genome.wustl.edu	37	17	47388727	47388727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145365.1	-1	validated	p.G419D	1.000	222	0%	261	31.4%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF652	22834	genome.wustl.edu	37	17	47394293	47394293	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145365.1	-1	validated	p.N265	1.000	131	0%	186	28%	9	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PHB	5245	genome.wustl.edu	37	17	47486412	47486412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002634.2	-1	reviewed	p.V168M	1.000	100	0%	106	12.3%	240	0%	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMPfam_Band_7,HMMSmart_SM00244
PHB	5245	genome.wustl.edu	37	17	47486772	47486772	+	Missense_Mutation	SNP	C	C	T	rs121918372		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002634.2	-1	reviewed	p.R105H	1.000	57	0%	94	28.7%	496	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_Band_7,HMMSmart_SM00244
NGFR	4804	genome.wustl.edu	37	17	47590321	47590321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002507.3	+1	reviewed	p.D412N	0.999	11	0%	24	29.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
ABCC3	8714	genome.wustl.edu	37	17	48736664	48736664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000502426	+1	known	p.Q266*	0.246	46	0%	38	26.3%	12	0%	-	-	-	NULL
ABCC3	8714	genome.wustl.edu	37	17	48753898	48753898	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003786.3	+1	reviewed	p.P1109	0.482	123	0%	117	23.9%	8	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ANKRD40	91369	genome.wustl.edu	37	17	48773435	48773435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052855.3	-1	validated	p.F344V	1.000	59	0%	152	33.6%	31	0%	benign(0.252)	tolerated(0.29)	neutral(0.055)	NULL
ANKRD40	91369	genome.wustl.edu	37	17	48777244	48777244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052855.3	-1	validated	p.E98D	0.627	25	0%	47	23.4%	36	0%	benign(0.037)	tolerated(0.57)	neutral(0.008)	superfamily_Ankyrin repeat
SPAG9	9043	genome.wustl.edu	37	17	49048106	49048106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001130528.2	-1	reviewed	p.V1271A	1.000	51	0%	84	27.4%	45	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
COX11	1353	genome.wustl.edu	37	17	53045860	53045860	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004375.3	-1	reviewed	p.L50	0.732	88	1.1%	59	37.3%	100	1%	-	-	-	NULL
TRIM25	7706	genome.wustl.edu	37	17	54985867	54985867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005082.4	-1	reviewed	p.A219S	0.206	110	0%	93	35.5%	10	0%	possibly_damaging(0.842)	tolerated(0.08)	deleterious(0.622)	NULL
COIL	8161	genome.wustl.edu	37	17	55027420	55027420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004645.2	-1	reviewed	p.W395R	0.995	124	0%	201	26.4%	18	0%	benign(0.34)	tolerated(0.65)	neutral(0.111)	NULL
AKAP1	8165	genome.wustl.edu	37	17	55187444	55187444	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003488.3	+1	reviewed	p.E591	0.000	65	0%	98	24.5%	72	0%	-	-	-	NULL
CUEDC1	404093	genome.wustl.edu	37	17	55950132	55950132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017949.1	-1	provisional	p.R226C	1.000	32	0%	46	32.6%	51	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RNF43	54894	genome.wustl.edu	37	17	56435545	56435545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017763.4	-1	validated	p.R531H	1.000	108	0%	150	30.7%	62	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTMR4	9110	genome.wustl.edu	37	17	56581505	56581505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004687.4	-1	validated	p.R521H	1.000	107	0%	239	28.9%	19	0%	benign(0.013)	tolerated(0.3)	neutral(0.029)	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR4	9110	genome.wustl.edu	37	17	56581753	56581753	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004687.4	-1	validated	p.Q466*	1.000	57	0%	225	32.9%	32	0%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
TEX14	56155	genome.wustl.edu	37	17	56647797	56647797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198393.2	-1	reviewed	p.A1296T	0.004	98	0%	115	31.3%	0	-	benign(0.273)	tolerated(0.12)	neutral(0.290)	NULL
TEX14	56155	genome.wustl.edu	37	17	56679261	56679261	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198393.2	-1	reviewed	p.Y528	0.022	115	0%	150	36%	0	-	-	-	-	NULL
ENSG00000227324	0	genome.wustl.edu	37	17	56738205	56738205	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453538	-1	known	p.A252	0.973	244	0%	322	37%	0	-	-	-	-	HMMPfam_TAP42
ENSG00000227324	0	genome.wustl.edu	37	17	56738539	56738539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453538	-1	known	p.A141D	0.006	99	0%	131	15.3%	0	-	-	-	-	HMMPfam_TAP42
ENSG00000227324	0	genome.wustl.edu	37	17	56738642	56738642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453538	-1	known	p.A107T	0.997	95	0%	141	34.8%	0	-	-	-	-	HMMPfam_TAP42
DHX40	79665	genome.wustl.edu	37	17	57683021	57683021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024612.4	+1	reviewed	p.V729A	0.927	83	0%	90	28.9%	239	0%	benign(0.001)	tolerated(1)	-	NULL
USP32	84669	genome.wustl.edu	37	17	58300812	58300812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032582.3	-1	validated	p.A523D	1.000	102	0%	104	21.2%	8	0%	probably_damaging(0.982)	tolerated(0.34)	neutral(0.450)	HMMSmart_DUSP
USP32	84669	genome.wustl.edu	37	17	58313499	58313499	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032582.3	-1	validated	p.Y413	1.000	152	0%	206	41.3%	10	0%	-	-	-	HMMSmart_DUSP
BCAS3	54828	genome.wustl.edu	37	17	59445704	59445704	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099432.1	+1	validated	p.S829	1.000	80	0%	71	31%	20	0%	-	-	-	NULL
BRIP1	83990	genome.wustl.edu	37	17	59821817	59821817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032043.1	-1	reviewed	p.A745T	1.000	467	0%	460	32.6%	10	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00491
BRIP1	83990	genome.wustl.edu	37	17	59924495	59924495	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032043.1	-1	reviewed	p.P198	0.028	203	0%	195	36.4%	3	0%	-	-	-	HMMSmart_SM00488,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLK2	11011	genome.wustl.edu	37	17	60601665	60601665	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006852.3	+1	validated	p.P112	1.000	101	0%	116	43.1%	4	0%	-	-	-	NULL
ACE	1636	genome.wustl.edu	37	17	61560471	61560471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000789.2	+1	reviewed	p.R475H	1.000	60	0%	60	11.7%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
DCAF7	10238	genome.wustl.edu	37	17	61657290	61657290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000310827	+1	known	p.A172T	1.000	47	0%	49	10.2%	137	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAP3K3	4215	genome.wustl.edu	37	17	61759195	61759195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203351.1	+1	reviewed	p.R222Q	1.000	84	1.2%	121	33.9%	9	0%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
CCDC47	57003	genome.wustl.edu	37	17	61829311	61829311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020198.2	-1	validated	p.R454C	1.000	151	0%	181	32%	292	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1682
DDX42	11325	genome.wustl.edu	37	17	61890782	61890782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007372.2	+1	reviewed	p.V624I	1.000	140	0%	157	30.6%	94	0%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX42	11325	genome.wustl.edu	37	17	61895286	61895286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007372.2	+1	reviewed	p.A782V	0.000	110	0%	152	10.5%	120	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
GH1	2688	genome.wustl.edu	37	17	61994782	61994782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000515.3	-1	reviewed	p.A181T	0.906	60	0%	103	11.7%	0	-	possibly_damaging(0.792)	tolerated(0.19)	neutral(0.346)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
SCN4A	6329	genome.wustl.edu	37	17	62045427	62045427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000334.4	-1	reviewed	p.A331V	0.349	171	0%	252	30.6%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GNA13	10672	genome.wustl.edu	37	17	63049779	63049779	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006572.4	-1	validated	p.Q117	0.000	140	0%	252	29%	17	0%	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
RGS9	8787	genome.wustl.edu	37	17	63193325	63193325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003835.3	+1	reviewed	p.Q314H	1.000	108	0%	127	29.9%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
APOH	350	genome.wustl.edu	37	17	64224235	64224235	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000042.2	-1	reviewed	p.T48	0.000	267	0%	326	35.6%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
PRKCA	5578	genome.wustl.edu	37	17	64737785	64737785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002737.2	+1	reviewed	p.A444V	1.000	164	0.6%	169	27.2%	1	0%	possibly_damaging(0.674)	deleterious(0.04)	deleterious(0.589)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HELZ	9931	genome.wustl.edu	37	17	65104791	65104791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014877.3	-1	validated	p.R1514Q	0.255	157	0%	143	23.8%	22	0%	unknown(0)	deleterious(0)	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65116659	65116659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014877.3	-1	validated	p.A1234T	1.000	172	0%	137	30.7%	9	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
HELZ	9931	genome.wustl.edu	37	17	65157102	65157102	+	Silent	SNP	C	C	T	rs186629762	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014877.3	-1	validated	p.P662	0.688	142	0%	151	11.3%	12	0%	-	-	-	superfamily_SSF52540
HELZ	9931	genome.wustl.edu	37	17	65163896	65163896	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014877.3	-1	validated	p.Q483*	1.000	316	0%	321	27.7%	5	0%	-	-	-	NULL
WIPI1	55062	genome.wustl.edu	37	17	66431771	66431771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017983.5	-1	validated	p.A204V	1.000	100	0%	108	26.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ABCA8	10351	genome.wustl.edu	37	17	66877304	66877304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007168.2	-1	reviewed	p.S1292F	0.161	226	0%	212	13.7%	4	0%	possibly_damaging(0.949)	tolerated(0.09)	deleterious(0.690)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA8	10351	genome.wustl.edu	37	17	66928442	66928442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007168.2	-1	reviewed	p.D262Y	0.006	89	0%	110	35.5%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67041409	67041409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080283.3	-1	reviewed	p.A125T	0.870	195	0%	201	41.8%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
ABCA6	23460	genome.wustl.edu	37	17	67102217	67102217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080284.2	-1	reviewed	p.R842Q	0.950	167	0%	184	31.5%	0	-	possibly_damaging(0.765)	deleterious(0.04)	deleterious(0.633)	NULL
MAP2K6	5608	genome.wustl.edu	37	17	67522843	67522843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002758.3	+1	reviewed	p.S292P	1.000	117	0%	111	34.2%	241	0%	possibly_damaging(0.841)	tolerated(0.1)	deleterious(0.608)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNJ16	3773	genome.wustl.edu	37	17	68128638	68128638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018658.1	+1	reviewed	p.R137H	0.550	129	0%	224	10.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_SSF81324
KCNJ16	3773	genome.wustl.edu	37	17	68129333	68129333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018658.1	+1	reviewed	p.A369T	0.106	197	0%	300	30.3%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
KCNJ2	3759	genome.wustl.edu	37	17	68172379	68172379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000891.2	+1	reviewed	p.T400M	1.000	224	0.4%	227	31.7%	0	-	benign(0.043)	tolerated(0.17)	neutral(0.061)	NULL
SDK2	54549	genome.wustl.edu	37	17	71357897	71357897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144952.1	-1	provisional	p.R1798M	1.000	27	0%	20	20%	0	-	benign(0.394)	tolerated(0.26)	neutral(0.161)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GPR142	350383	genome.wustl.edu	37	17	72363715	72363715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181790.1	+1	provisional	p.A24D	0.992	45	0%	82	35.4%	0	-	unknown(0)	-	-	NULL
CD300C	10871	genome.wustl.edu	37	17	72540982	72540982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006678.3	-1	provisional	p.W56G	0.960	107	0%	86	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SLC9A3R1	9368	genome.wustl.edu	37	17	72758163	72758163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004252.3	+1	reviewed	p.P152S	1.000	33	0%	32	25%	37	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ
OTOP2	92736	genome.wustl.edu	37	17	72926822	72926822	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178160.2	+1	validated	p.T364	0.000	18	0%	39	20.5%	0	-	-	-	-	NULL
GGA3	23163	genome.wustl.edu	37	17	73237110	73237110	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138619.2	-1	reviewed	p.T325	0.233	113	0%	64	26.6%	30	0%	-	-	-	NULL
MIF4GD	57409	genome.wustl.edu	37	17	73262836	73262836	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000325102	-1	known	p.R213*	0.383	17	0%	22	40.9%	26	0%	-	-	-	NULL
LLGL2	3993	genome.wustl.edu	37	17	73570979	73570979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004524.2	+1	reviewed	p.A1014T	0.003	23	0%	31	35.5%	89	0%	unknown(0)	-	-	NULL
WBP2	23558	genome.wustl.edu	37	17	73843004	73843004	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012478.3	-1	reviewed	p.N239	0.353	18	0%	14	35.7%	79	0%	-	-	-	NULL
SRP68	6730	genome.wustl.edu	37	17	74037045	74037045	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014230.2	-1	reviewed	p.V513	1.000	22	0%	34	20.6%	143	0%	-	-	-	NULL
QRICH2	84074	genome.wustl.edu	37	17	74274255	74274255	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032134.1	-1	provisional	p.S1478	0.000	11	0%	19	47.4%	7	0%	-	-	-	NULL
AANAT	15	genome.wustl.edu	37	17	74464970	74464970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001088.2	+1	reviewed	p.A48T	1.000	12	0%	14	57.1%	0	-	possibly_damaging(0.796)	tolerated(0.08)	deleterious(0.599)	superfamily_Acyl_CoA_acyltransferase
ST6GALNAC1	55808	genome.wustl.edu	37	17	74621972	74621972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018414.3	-1	validated	p.A512T	0.000	88	0%	80	30%	1	0%	benign(0.144)	tolerated(0.27)	neutral(0.046)	HMMPfam_Glyco_transf_29
TNRC6C	57690	genome.wustl.edu	37	17	76089762	76089762	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142640.1	+1	validated	p.D1405	0.849	39	0%	64	50%	6	0%	-	-	-	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76094525	76094525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142640.1	+1	validated	p.A1506T	1.000	42	0%	57	14%	7	0%	benign(0.307)	deleterious(0.04)	neutral(0.445)	NULL
BIRC5	332	genome.wustl.edu	37	17	76212055	76212055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012271.1	+1	reviewed	p.G77D	0.001	25	0%	47	31.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BIR,HMMSmart_BIR,superfamily_SSF57924
DNAH17	8632	genome.wustl.edu	37	17	76497355	76497355	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000389840	-1	known	p.C1784	1.000	24	0%	23	60.9%	0	-	-	-	-	NULL
USP36	57602	genome.wustl.edu	37	17	76809059	76809059	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025090.3	-1	validated	p.P430	0.024	65	0%	107	28%	28	0%	-	-	-	NULL
CANT1	124583	genome.wustl.edu	37	17	76993489	76993489	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138793.3	-1	reviewed	p.H72	0.743	23	0%	22	45.5%	11	0%	-	-	-	NULL
C1QTNF1	114897	genome.wustl.edu	37	17	77042705	77042705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030968.2	+1	validated	p.R75H	1.000	181	0%	243	11.9%	3	0%	possibly_damaging(0.939)	deleterious(0.03)	deleterious(0.749)	NULL
CBX8	57332	genome.wustl.edu	37	17	77768943	77768943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020649.2	-1	validated	p.G221S	0.492	6	0.000	19	0.474	18	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
CCDC40	55036	genome.wustl.edu	37	17	78032407	78032407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017950.2	+1	validated	p.A425V	0.874	68	0%	69	11.6%	8	0%	benign(0.385)	tolerated(0.15)	neutral(0.364)	NULL
RNF213	57674	genome.wustl.edu	37	17	78314015	78314015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508628	+1	known	p.V1950I	0.008	35	0%	25	20%	2	0%	benign(0.004)	deleterious(0.03)	neutral(0.364)	NULL
RNF213	57674	genome.wustl.edu	37	17	78322040	78322040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508628	+1	known	p.A3302V	0.000	43	0%	36	22.2%	6	0%	possibly_damaging(0.712)	deleterious(0.02)	deleterious(0.641)	NULL
RNF213	57674	genome.wustl.edu	37	17	78357549	78357549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508628	+1	known	p.A4715T	1.000	217	0%	197	36.5%	10	0%	benign(0.005)	tolerated(0.5)	neutral(0.010)	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79225168	79225168	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138570.2	-1	validated	p.P730	0.000	39	0%	22	45.5%	12	0%	-	-	-	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79225270	79225270	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138570.2	-1	validated	p.P696	0.001	9	0.000	9	0.444	10	0%	-	-	-	NULL
SLC25A10	1468	genome.wustl.edu	37	17	79686906	79686906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012140.3	+1	provisional	p.A251T	1.000	17	0%	27	29.6%	111	0%	possibly_damaging(0.909)	tolerated(0.1)	deleterious(0.648)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
CCDC57	284001	genome.wustl.edu	37	17	80136983	80136983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198082.2	-1	validated	p.R432C	0.079	32	0%	55	27.3%	9	0%	benign(0.163)	deleterious(0.03)	neutral(0.379)	NULL
C17orf101	79701	genome.wustl.edu	37	17	80352359	80352359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175902.4	-1	validated	p.S295I	0.030	58	0%	140	22.9%	30	0%	unknown(0)	-	-	HMMSmart_SM00702
TBCD	6904	genome.wustl.edu	37	17	80828141	80828141	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005993.4	+1	reviewed	p.R454	1.000	21	0%	34	35.3%	24	0%	-	-	-	superfamily_ARM repeat
COLEC12	81035	genome.wustl.edu	37	18	334752	334752	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130386.2	-1	validated	p.P602	0.003	27	0%	16	31.2%	3	0%	-	-	-	NULL
ENOSF1	55556	genome.wustl.edu	37	18	677432	677432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_202758.2	-1	validated	p.P361L	1.000	183	0%	262	13.7%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF51604
YES1	7525	genome.wustl.edu	37	18	747987	747987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005433.3	-1	reviewed	p.A135T	1.000	311	0%	362	32%	43	0%	benign(0)	tolerated(0.97)	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
EMILIN2	84034	genome.wustl.edu	37	18	2891226	2891226	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032048.2	+1	validated	p.E367	1.000	72	0%	102	14.7%	2	0%	-	-	-	NULL
MYL12A	10627	genome.wustl.edu	37	18	3253291	3253291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006471.2	+1	provisional	p.R16C	1.000	241	0%	410	28.5%	860	0%	possibly_damaging(0.648)	deleterious(0.03)	deleterious(0.592)	NULL
DLGAP1	9229	genome.wustl.edu	37	18	3508632	3508632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004746.2	-1	provisional	p.G836D	1.000	67	0%	80	13.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GKAP
EPB41L3	23136	genome.wustl.edu	37	18	5406832	5406832	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012307.2	-1	provisional	p.R765*	1.000	101	0%	89	19.1%	1	0%	-	-	-	HMMPfam_SAB
LAMA1	284217	genome.wustl.edu	37	18	6950781	6950781	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005559.2	-1	validated	p.T2799	1.000	82	0%	76	18.4%	15	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
LAMA1	284217	genome.wustl.edu	37	18	7032151	7032151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005559.2	-1	validated	p.V730M	1.000	83	0%	82	20.7%	4	0%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
SOGA2	23255	genome.wustl.edu	37	18	8825737	8825737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015210.3	+1	predicted	p.T1410M	1.000	31	0%	15	53.3%	3	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
IMPA2	3613	genome.wustl.edu	37	18	12028083	12028083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014214.1	+1	validated	p.R178C	0.995	100	0%	101	32.7%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
TUBB6	84617	genome.wustl.edu	37	18	12326037	12326037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032525.1	+1	provisional	p.D417N	1.000	151	0%	104	26.9%	31	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_Tub_FtsZ_C
CEP76	79959	genome.wustl.edu	37	18	12697283	12697283	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024899.2	-1	provisional	p.W215*	1.000	107	0%	172	37.8%	15	0%	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13092441	13092441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032142.3	+1	validated	p.L1461I	0.998	256	0%	274	17.5%	11	0%	possibly_damaging(0.866)	tolerated(0.55)	neutral(0.343)	NULL
RNMT	8731	genome.wustl.edu	37	18	13734579	13734579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003799.1	+1	provisional	p.W178C	1.000	59	0%	104	30.8%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pox_MCEL,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MC5R	4161	genome.wustl.edu	37	18	13826000	13826000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005913.1	+1	provisional	p.A79V	1.000	24	0%	55	12.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MC5R	4161	genome.wustl.edu	37	18	13826089	13826089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005913.1	+1	provisional	p.A109T	0.260	32	0%	85	34.1%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MC5R	4161	genome.wustl.edu	37	18	13826231	13826231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005913.1	+1	provisional	p.A156V	0.001	56	0%	130	28.5%	0	-	benign(0)	tolerated(0.92)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD30B	374860	genome.wustl.edu	37	18	14763815	14763815	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145029.1	+1	validated	p.I317	0.010	24	0%	46	32.6%	0	-	-	-	-	NULL
ROCK1	6093	genome.wustl.edu	37	18	18608786	18608786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005406.2	-1	reviewed	p.V388I	1.000	189	0%	214	25.7%	3	0%	benign(0.259)	tolerated(0.42)	neutral(0.041)	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
ROCK1	6093	genome.wustl.edu	37	18	18629082	18629082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005406.2	-1	reviewed	p.A129T	1.000	220	0%	191	36.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ESCO1	114799	genome.wustl.edu	37	18	19112452	19112452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052911.2	-1	validated	p.R786H	1.000	170	0%	187	23.5%	24	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ESCO1	114799	genome.wustl.edu	37	18	19144215	19144215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052911.2	-1	validated	p.K590N	0.998	42	0%	55	43.6%	16	0%	benign(0.328)	deleterious(0.01)	deleterious(0.509)	NULL
MIB1	57534	genome.wustl.edu	37	18	19438604	19438604	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020774.2	+1	validated	p.E959	0.997	200	0%	207	25.6%	19	0%	-	-	-	superfamily_SSF57850
RBBP8	5932	genome.wustl.edu	37	18	20573095	20573095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002894.2	+1	reviewed	p.E435D	0.000	152	0%	193	28%	51	0%	benign(0.069)	tolerated(0.09)	neutral(0.301)	NULL
RIOK3	8780	genome.wustl.edu	37	18	21043043	21043043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003831.3	+1	reviewed	p.A60V	0.306	183	0%	314	35.7%	13	0%	benign(0.005)	tolerated(0.42)	neutral(0.014)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21478997	21478997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198129.1	+1	reviewed	p.V1935A	0.001	135	0%	163	14.7%	4	0%	benign(0.023)	tolerated(0.62)	neutral(0.005)	HMMPfam_Laminin_I
LAMA3	3909	genome.wustl.edu	37	18	21494392	21494392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198129.1	+1	reviewed	p.G2450S	1.000	76	0%	62	38.7%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
TTC39C	125488	genome.wustl.edu	37	18	21703895	21703895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135993.1	+1	validated	p.F428L	1.000	83	0%	98	41.8%	28	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Deme6,superfamily_TPR-like
OSBPL1A	114876	genome.wustl.edu	37	18	21750344	21750344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080597.2	-1	reviewed	p.A789T	0.997	157	0%	187	22.5%	29	0%	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	HMMPfam_Oxysterol_BP
TAF4B	6875	genome.wustl.edu	37	18	23969885	23969885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005640.1	+1	validated	p.T833M	0.996	387	0%	438	29.2%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TAF4
KCTD1	284252	genome.wustl.edu	37	18	24035725	24035725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142730.1	-1	validated	p.K860N	1.000	146	0%	188	12.2%	78	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
CHST9	83539	genome.wustl.edu	37	18	24496321	24496321	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031422.4	-1	validated	p.Q412*	1.000	395	0%	420	33.1%	4	0%	-	-	-	HMMPfam_Sulfotransfer_2
B4GALT6	9331	genome.wustl.edu	37	18	29264341	29264341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004775.3	-1	reviewed	p.A17T	1.000	13	0%	12	33.3%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MCART2	147407	genome.wustl.edu	37	18	29340338	29340338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001034172.2	-1	validated	p.A96V	1.000	231	0%	300	28%	4	0%	benign(0.396)	deleterious(0.01)	deleterious(0.532)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
MEP1B	4225	genome.wustl.edu	37	18	29772620	29772620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005925.2	+1	validated	p.G32R	1.000	494	0%	667	30%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NOL4	8715	genome.wustl.edu	37	18	31463348	31463348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003787.3	-1	validated	p.A528V	0.809	214	0%	296	17.2%	1	0%	benign(0.121)	tolerated(0.16)	neutral(0.069)	NULL
NOL4	8715	genome.wustl.edu	37	18	31538233	31538233	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003787.3	-1	validated	p.G402	0.811	283	0%	319	31.3%	1	0%	-	-	-	NULL
NOL4	8715	genome.wustl.edu	37	18	31685090	31685090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003787.3	-1	validated	p.A150V	1.000	151	0%	202	33.2%	1	0%	possibly_damaging(0.913)	tolerated(0.09)	deleterious(0.661)	NULL
DTNA	1837	genome.wustl.edu	37	18	32374205	32374205	+	Missense_Mutation	SNP	C	C	T	rs141141892	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001390.4	+1	reviewed	p.A118V	1.000	168	0%	207	34.8%	4	0%	benign(0.076)	tolerated(0.43)	neutral(0.019)	HMMPfam_efhand_1,superfamily_EF-hand
MOCOS	55034	genome.wustl.edu	37	18	33848532	33848532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017947.2	+1	validated	p.D851Y	0.964	270	0%	344	12.2%	12	0%	benign(0.031)	deleterious(0.01)	neutral(0.407)	HMMPfam_MOSC
LOC100131669	100131669	genome.wustl.edu	37	18	42643060	42643060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001715120.1	-1	model	p.L107F	1.000	62	0%	50	42%	4	0%	-	-	-	NULL
SLC14A2	8170	genome.wustl.edu	37	18	43207074	43207074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007163.3	+1	validated	p.V161	0.842	258	0%	243	14.4%	1	0%	-	-	-	HMMPfam_UT
EPG5	57724	genome.wustl.edu	37	18	43496130	43496130	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020964.2	-1	validated	p.P1142	0.173	122	0.8%	135	30.4%	4	0%	-	-	-	NULL
PSTPIP2	9050	genome.wustl.edu	37	18	43571882	43571882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000360076	-1	known	p.G270D	0.146	63	0%	57	45.6%	14	0%	benign(0.036)	tolerated(0.18)	neutral(0.058)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44435577	44435577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004671.2	-1	validated	p.D196N	1.000	81	0%	112	30.4%	31	3.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44470854	44470854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004671.2	-1	validated	p.R63H	1.000	211	0.5%	319	37.6%	39	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44601675	44601675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031303.2	+1	validated	p.A274T	1.000	92	0%	64	37.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
KATNAL2	83473	genome.wustl.edu	37	18	44627297	44627297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031303.2	+1	validated	p.V441A	1.000	211	0%	251	33.9%	0	-	benign(0.01)	tolerated(1)	neutral(0.001)	superfamily_SSF52540
ZBTB7C	201501	genome.wustl.edu	37	18	45566720	45566720	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039360.1	-1	validated	p.P253	0.034	39	0%	42	33.3%	3	0%	-	-	-	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45566986	45566986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039360.1	-1	validated	p.D165N	0.744	72	0%	88	27.3%	9	0%	possibly_damaging(0.63)	deleterious(0.04)	deleterious(0.569)	NULL
LIPG	9388	genome.wustl.edu	37	18	47101835	47101835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006033.2	+1	reviewed	p.T223M	1.000	45	0%	68	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
MYO5B	4645	genome.wustl.edu	37	18	47480728	47480728	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080467.2	-1	reviewed	p.P541	0.897	142	0%	122	9.8%	47	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CXXC1	30827	genome.wustl.edu	37	18	47809294	47809294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001101654.1	-1	validated	p.R589H	1.000	54	0%	46	30.4%	124	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MAPK4	5596	genome.wustl.edu	37	18	48190385	48190385	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002747.3	+1	reviewed	p.R19	1.000	119	0%	84	11.9%	6	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
ELAC1	55520	genome.wustl.edu	37	18	48513252	48513252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018696.2	+1	validated	p.A297S	1.000	52	0%	91	15.4%	28	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF56281
C18orf54	162681	genome.wustl.edu	37	18	51888292	51888292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173529.4	+1	validated	p.R188H	0.000	103	0%	160	13.1%	3	0%	benign(0.007)	tolerated(0.11)	neutral(0.272)	NULL
ATP8B1	5205	genome.wustl.edu	37	18	55368294	55368294	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005603.4	-1	reviewed	p.T177	0.133	121	0%	125	27.2%	10	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
NEDD4L	23327	genome.wustl.edu	37	18	56008342	56008342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144967.1	+1	validated	p.R400C	1.000	73	0%	82	37.8%	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
LMAN1	3998	genome.wustl.edu	37	18	57022784	57022784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005570.3	-1	reviewed	p.E107D	1.000	97	0%	115	15.7%	70	0%	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
CCBE1	147372	genome.wustl.edu	37	18	57134047	57134047	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133459.3	-1	reviewed	p.C159	0.994	88	0%	98	30.6%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PMAIP1	5366	genome.wustl.edu	37	18	57570069	57570069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000269518	+1	known	p.H134Y	0.007	19	0%	28	35.7%	10	0%	unknown(0)	-	-	NULL
KIAA1468	57614	genome.wustl.edu	37	18	59932063	59932063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020854.3	+1	validated	p.G870D	1.000	64	0%	76	22.4%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ZCCHC2	54877	genome.wustl.edu	37	18	60242156	60242156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017742.4	+1	validated	p.A948T	0.000	89	0%	115	10.4%	12	0%	benign(0)	tolerated(1)	-	NULL
ZCCHC2	54877	genome.wustl.edu	37	18	60242257	60242257	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017742.4	+1	validated	p.A981	0.099	81	0%	87	19.5%	3	0%	-	-	-	NULL
PHLPP1	23239	genome.wustl.edu	37	18	60642666	60642666	+	Silent	SNP	C	C	T	rs143156237	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194449.2	+1	validated	p.A752	0.996	245	0%	228	29.8%	20	0%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PHLPP1	23239	genome.wustl.edu	37	18	60645923	60645923	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194449.2	+1	validated	p.S959	0.999	41	0%	37	18.9%	13	0%	-	-	-	NULL
SERPINB11	89778	genome.wustl.edu	37	18	61390486	61390486	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080475.2	+1	validated	p.T344	0.001	186	0%	301	33.2%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CDH7	1005	genome.wustl.edu	37	18	63481838	63481838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004361.2	+1	reviewed	p.T208I	1.000	207	0%	221	26.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSEL	92126	genome.wustl.edu	37	18	65180558	65180558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032160.2	-1	validated	p.N440D	1.000	89	0%	113	15%	3	0%	possibly_damaging(0.78)	tolerated(0.3)	neutral(0.320)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180711	65180711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032160.2	-1	validated	p.A389T	1.000	134	0%	163	29.4%	3	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
RTTN	25914	genome.wustl.edu	37	18	67806869	67806869	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173630.3	-1	validated	p.S918	0.560	806	0%	635	26.3%	5	0%	-	-	-	NULL
RTTN	25914	genome.wustl.edu	37	18	67817851	67817851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173630.3	-1	validated	p.E683G	0.225	437	0%	423	30.3%	5	20%	benign(0.002)	tolerated(0.32)	neutral(0.024)	superfamily_ARM repeat
NETO1	81832	genome.wustl.edu	37	18	70417607	70417607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138966.2	-1	reviewed	p.A411T	1.000	140	0%	178	29.8%	0	-	possibly_damaging(0.61)	deleterious(0.02)	deleterious(0.595)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72775293	72775293	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017757.2	+1	reviewed	p.Y1872	0.848	20	0%	23	30.4%	6	0%	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72775721	72775721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017757.2	+1	reviewed	p.G2015D	0.020	16	0%	10	40%	4	0%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72997579	72997579	+	Missense_Mutation	SNP	G	G	A	rs111929894		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005786.4	+1	reviewed	p.G28S	1.000	29	0%	43	30.2%	6	0%	benign(0.194)	tolerated(0.16)	neutral(0.077)	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72999868	72999868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005786.4	+1	reviewed	p.A791T	1.000	78	0%	53	22.6%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GALR1	2587	genome.wustl.edu	37	18	74980719	74980719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001480.3	+1	reviewed	p.A304V	0.002	87	0%	96	34.4%	0	-	possibly_damaging(0.69)	tolerated(0.1)	deleterious(0.533)	superfamily_Family A G protein-coupled receptor-like
ATP9B	374868	genome.wustl.edu	37	18	76966971	76966971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198531.3	+1	validated	p.S330N	1.000	65	0%	47	31.9%	12	0%	benign(0.076)	tolerated(0.27)	neutral(0.039)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
ATP9B	374868	genome.wustl.edu	37	18	77037058	77037058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198531.3	+1	validated	p.R425C	1.000	177	0%	181	10.5%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase
ATP9B	374868	genome.wustl.edu	37	18	77067105	77067105	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198531.3	+1	validated	p.I548	0.098	103	0%	85	11.8%	13	0%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
THEG	51298	genome.wustl.edu	37	19	371275	371275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016585.3	-1	reviewed	p.A228V	0.005	13	0%	38	31.6%	0	-	possibly_damaging(0.798)	tolerated(0.06)	deleterious(0.623)	HMMSmart_SM00705
R3HDM4	91300	genome.wustl.edu	37	19	900138	900138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138774.3	-1	validated	p.A162T	0.429	7	0.000	10	0.400	126	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
ABCA7	10347	genome.wustl.edu	37	19	1058232	1058232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019112.3	+1	reviewed	p.R1705W	1.000	6	0.000	22	0.455	6	0%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
MUM1	84939	genome.wustl.edu	37	19	1358631	1358631	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_024247.1	+1	validated	NULL	0.000	6	0.000	12	0.333	4	0%	-	-	-	-
PCSK4	54760	genome.wustl.edu	37	19	1486905	1486905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017573.3	-1	validated	p.A339T	1.000	5	0.000	6	0.833	3	0%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
LMNB2	84823	genome.wustl.edu	37	19	2432450	2432450	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032737.2	-1	reviewed	p.T498	0.749	17	0%	14	35.7%	97	0%	-	-	-	HMMPfam_IF_tail,superfamily_SSF74853
ZNF555	148254	genome.wustl.edu	37	19	2853266	2853266	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152791.4	+1	validated	p.C401	1.000	45	0%	97	26.8%	13	7.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF556	80032	genome.wustl.edu	37	19	2878089	2878089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024967.1	+1	provisional	p.T378M	0.074	60	3.3%	96	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF77	58492	genome.wustl.edu	37	19	2933917	2933917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021217.2	-1	validated	p.S403N	0.025	165	0%	229	31.9%	17	0%	benign(0.355)	deleterious(0.02)	deleterious(0.495)	superfamily_SSF57667
GNA15	2769	genome.wustl.edu	37	19	3163012	3163012	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002068.2	+1	validated	p.L374	1.000	18	0%	23	52.2%	5	0%	-	-	-	NULL
TJP3	27134	genome.wustl.edu	37	19	3736244	3736244	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014428.1	+1	provisional	p.G436	1.000	9	0.000	10	0.500	52	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
EEF2	1938	genome.wustl.edu	37	19	3977918	3977918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001961.3	-1	reviewed	p.G656S	1.000	12	0%	14	57.1%	8000	0%	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMPfam_EFG_IV,superfamily_Ribosomal protein S5 domain 2-like
CCDC94	55702	genome.wustl.edu	37	19	4262016	4262016	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018074.4	+1	provisional	p.R205*	0.000	61	0%	75	24%	43	0%	-	-	-	HMMPfam_DUF572
STAP2	55620	genome.wustl.edu	37	19	4325500	4325500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017720.2	-1	reviewed	p.A291V	0.000	129	0%	163	20.2%	96	1%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
HDGFRP2	84717	genome.wustl.edu	37	19	4499577	4499577	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001520.1	+1	reviewed	p.I555	0.114	16	0%	10	60%	165	0%	-	-	-	NULL
KDM4B	23030	genome.wustl.edu	37	19	5047644	5047644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015015.2	+1	validated	p.S197N	1.000	35	0%	42	21.4%	49	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00558,HMMPfam_JmjC
PTPRS	5802	genome.wustl.edu	37	19	5218452	5218452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002850.3	-1	reviewed	p.R1343C	0.991	48	0%	84	32.1%	228	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPRS	5802	genome.wustl.edu	37	19	5245991	5245991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002850.3	-1	reviewed	p.V262M	1.000	10	0.000	6	0.667	49	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PTPRS	5802	genome.wustl.edu	37	19	5273523	5273523	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002850.3	-1	reviewed	p.N103	1.000	55	0%	54	35.2%	121	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZNRF4	148066	genome.wustl.edu	37	19	5456656	5456656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181710.3	+1	validated	p.A385V	0.308	21	0%	40	40%	0	-	possibly_damaging(0.799)	tolerated(0.15)	deleterious(0.542)	NULL
SAFB	6294	genome.wustl.edu	37	19	5668174	5668174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002967.2	+1	reviewed	p.R874C	0.995	43	0%	40	32.5%	155	0%	unknown(0)	deleterious(0)	-	NULL
FUT6	2528	genome.wustl.edu	37	19	5832343	5832343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000150.2	-1	reviewed	p.R79H	0.508	27	0%	17	29.4%	0	-	benign(0.162)	tolerated(0.12)	neutral(0.275)	HMMPfam_Glyco_transf_10
FUT3	2525	genome.wustl.edu	37	19	5844459	5844459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000149.3	-1	reviewed	p.R131H	1.000	69	0%	72	33.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Glyco_transf_10
FUT5	2527	genome.wustl.edu	37	19	5867545	5867545	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002034.2	-1	validated	p.C64	0.005	12	0%	19	31.6%	0	-	-	-	-	HMMPfam_Glyco_transf_10
RANBP3	8498	genome.wustl.edu	37	19	5925722	5925722	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007322.2	-1	reviewed	p.A280	0.000	36	0%	38	47.4%	83	0%	-	-	-	NULL
MLLT1	4298	genome.wustl.edu	37	19	6270734	6270734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005934.3	-1	validated	p.A17T	1.000	49	0%	56	37.5%	21	0%	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
ACER1	125981	genome.wustl.edu	37	19	6306820	6306820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133492.2	-1	validated	p.P234S	1.000	32	0%	37	29.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_aPHC
ALKBH7	84266	genome.wustl.edu	37	19	6374908	6374908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032306.2	+1	provisional	p.R197H	1.000	24	0%	37	40.5%	69	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC25A41	284427	genome.wustl.edu	37	19	6430164	6430164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000458275	-1	known	p.P157L	0.983	16	0%	21	33.3%	0	-	unknown(0)	deleterious(0.01)	-	NULL
GPR108	56927	genome.wustl.edu	37	19	6733241	6733241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080452.1	-1	provisional	p.M265I	0.268	23	0%	39	41%	57	0%	benign(0)	-	-	HMMPfam_Lung_7-TM_R
TRIP10	9322	genome.wustl.edu	37	19	6744697	6744697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004240.2	+1	validated	p.V259M	0.975	36	0%	68	11.8%	44	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
SH2D3A	10045	genome.wustl.edu	37	19	6760908	6760908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005490.2	-1	validated	p.R54W	0.322	9	0.000	10	0.500	6	0%	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
VAV1	7409	genome.wustl.edu	37	19	6821686	6821686	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005428.2	+1	reviewed	p.G125	0.996	93	0%	98	40.8%	1	0%	-	-	-	superfamily_Calponin-homology
ZNF557	79230	genome.wustl.edu	37	19	7083460	7083460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001044387.1	+1	validated	p.S333L	0.000	92	0%	133	30.8%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
INSR	3643	genome.wustl.edu	37	19	7163071	7163071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000208.2	-1	reviewed	p.E667D	1.000	133	0%	198	29.3%	5	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMSmart_SM00060,superfamily_Fibronectin type III
C19orf45	374877	genome.wustl.edu	37	19	7570269	7570269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198534.2	+1	validated	p.G281D	0.089	70	0%	139	10.8%	0	-	benign(0.259)	tolerated(0.19)	neutral(0.076)	NULL
PNPLA6	10908	genome.wustl.edu	37	19	7621377	7621377	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006702.4	+1	reviewed	p.T1006	0.024	164	0%	235	16.2%	103	0%	-	-	-	HMMPfam_Patatin,superfamily_Acyl_Trfase/lysoPlipase
CAMSAP3	57662	genome.wustl.edu	37	19	7676001	7676001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080429.2	+1	validated	p.R384H	1.000	4	0.000	21	0.286	23	0%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
PCP2	126006	genome.wustl.edu	37	19	7697375	7697375	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_174895.1	-1	provisional	p.S65	0.121	32	0%	52	38.5%	2	0%	-	-	-	HMMPfam_GoLoco,HMMSmart_GoLoco
TRAPPC5	126003	genome.wustl.edu	37	19	7747472	7747472	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042461.1	+1	validated	p.D111	0.998	19	0%	11	45.5%	279	0%	-	-	-	HMMPfam_TRAPP
CD209	30835	genome.wustl.edu	37	19	7812456	7812456	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_026692.1	-1	reviewed	NULL	0.000	89	0%	134	35.1%	0	-	-	-	-	-
FBN3	84467	genome.wustl.edu	37	19	8175836	8175836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032447.3	-1	reviewed	p.A1409V	0.412	188	0%	143	18.9%	18	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
LOC100293194	100293194	genome.wustl.edu	37	19	8464948	8464948	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002345186.1	+1	model	p.R93	0.488	7	0.000	36	0.306	1	0%	-	-	-	NULL
RAB11B	9230	genome.wustl.edu	37	19	8466983	8466983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004218.3	+1	validated	p.A84T	0.998	4	0.000	7	0.571	244	0%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRAM1	84106	genome.wustl.edu	37	19	8555583	8555583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032152.3	-1	reviewed	p.R600C	0.195	20	0%	22	18.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH3-domain,HMMPfam_SH3_2
PRAM1	84106	genome.wustl.edu	37	19	8555836	8555836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032152.3	-1	reviewed	p.P559S	0.013	150	0%	110	10%	3	0%	probably_damaging(0.978)	tolerated(0.2)	deleterious(0.469)	NULL
PRAM1	84106	genome.wustl.edu	37	19	8564279	8564279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032152.3	-1	reviewed	p.P138L	0.000	35	0%	41	39%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
MYO1F	4542	genome.wustl.edu	37	19	8612926	8612926	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012335.3	-1	validated	p.A421	0.797	68	0%	99	14.1%	8	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS10	81794	genome.wustl.edu	37	19	8656920	8656920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030957.2	-1	reviewed	p.P552Q	0.939	9	0.000	27	0.333	12	0%	benign(0.119)	tolerated(0.54)	neutral(0.017)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
MUC16	94025	genome.wustl.edu	37	19	8976416	8976416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.A14138T	0.001	49	0%	66	13.6%	0	-	benign(0.041)	tolerated(0.53)	neutral(0.010)	HMMPfam_SEA,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9057849	9057849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.R9866M	0.000	99	0%	184	15.8%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9075258	9075258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.A4063V	0.000	280	0%	434	29.7%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9082640	9082640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.P3059S	0.021	180	0%	205	30.7%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9085146	9085146	+	Silent	SNP	G	G	A	rs73495780	byCluster;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.S2223	0.237	103	0%	138	39.1%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9087133	9087133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.T1561M	0.100	413	0%	494	28.5%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9090173	9090173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024690.2	-1	validated	p.P548S	0.001	212	0%	227	27.8%	0	-	unknown(0)	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204850	9204850	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004456.1	+1	provisional	p.T310	0.042	74	0%	109	33%	0	-	-	-	-	NULL
OLFM2	93145	genome.wustl.edu	37	19	9965027	9965027	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_058164.2	-1	provisional	p.T400	0.994	106	0%	153	32%	67	0%	-	-	-	HMMPfam_OLF,HMMSmart_OLF
COL5A3	50509	genome.wustl.edu	37	19	10108826	10108826	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015719.3	-1	reviewed	e9-1	0.981	618	0%	894	29.6%	0	-	-	-	-	-
SNORD105B	100113382	genome.wustl.edu	37	19	10220495	10220495	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_003688.1	+1	provisional	NULL	1.000	57	0%	55	14.5%	0	-	-	-	-	-
SNORD105B	100113382	genome.wustl.edu	37	19	10220503	10220503	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NR_003688.1	+1	provisional	NULL	0.005	43	2.3%	60	13.3%	0	-	-	-	-	-
EIF3G	8666	genome.wustl.edu	37	19	10226255	10226255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003755.3	-1	validated	p.A283T	1.000	25	0%	20	25%	331	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ICAM4	3386	genome.wustl.edu	37	19	10398388	10398388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039132.1	+1	reviewed	p.R165H	0.977	18	0%	32	28.1%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
FDX1L	112812	genome.wustl.edu	37	19	10426516	10426516	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000343376	-1	known	p.A53P	0.000	5	0.000	5	0.800	0	-	possibly_damaging(0.861)	-	-	NULL
PDE4A	5141	genome.wustl.edu	37	19	10570140	10570140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001111307.1	+1	validated	p.R389H	1.000	98	0%	99	20.2%	1	0%	benign(0.297)	tolerated(0.3)	neutral(0.120)	superfamily_HD-domain/PDEase-like
PDE4A	5141	genome.wustl.edu	37	19	10571726	10571726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001111307.1	+1	validated	p.A471V	1.000	55	0%	53	28.3%	1	0%	possibly_damaging(0.915)	tolerated(0.09)	deleterious(0.663)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE4A	5141	genome.wustl.edu	37	19	10578213	10578213	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001111307.1	+1	validated	p.C859	0.003	47	0%	71	14.1%	4	0%	-	-	-	NULL
ATG4D	84971	genome.wustl.edu	37	19	10662903	10662903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032885.4	+1	reviewed	p.R382H	1.000	37	0%	48	33.3%	78	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Peptidase_C54
AP1M2	10053	genome.wustl.edu	37	19	10694699	10694699	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005498.4	-1	reviewed	p.I30	0.616	21	0%	42	50%	110	0%	-	-	-	superfamily_SNARE-like
TMED1	11018	genome.wustl.edu	37	19	10943807	10943807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006858.2	-1	reviewed	p.R183H	1.000	18	0%	28	42.9%	70	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EMP24_GP25L
TMED1	11018	genome.wustl.edu	37	19	10945961	10945961	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006858.2	-1	reviewed	p.S84	0.123	63	0%	62	32.3%	56	0%	-	-	-	HMMPfam_EMP24_GP25L,superfamily_SSF101576
SMARCA4	6597	genome.wustl.edu	37	19	11138600	11138600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128849.1	+1	reviewed	p.R1119H	1.000	50	0%	57	28.1%	281	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
SMARCA4	6597	genome.wustl.edu	37	19	11169536	11169536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001128849.1	+1	reviewed	p.A1568T	1.000	27	0%	39	46.2%	541	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
TMEM205	374882	genome.wustl.edu	37	19	11453734	11453734	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145416.1	-1	validated	p.R109	0.016	43	0%	49	14.3%	315	0%	-	-	-	NULL
EPOR	2057	genome.wustl.edu	37	19	11492695	11492695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000121.3	-1	reviewed	p.D113G	1.000	35	0%	37	24.3%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind
CCDC151	115948	genome.wustl.edu	37	19	11537598	11537598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145045.4	-1	validated	p.R207W	1.000	19	0%	45	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKCSH	5589	genome.wustl.edu	37	19	11547247	11547247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002743.2	+1	reviewed	p.C39*	1.000	34	0%	49	18.4%	729	0%	-	-	-	HMMSmart_LDLa
ELAVL3	1995	genome.wustl.edu	37	19	11565496	11565496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001420.3	-1	reviewed	p.R317C	1.000	72	0%	110	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
ZNF653	115950	genome.wustl.edu	37	19	11598297	11598297	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138783.3	-1	validated	p.Y327	0.976	20	0%	39	38.5%	4	0%	-	-	-	NULL
CNN1	1264	genome.wustl.edu	37	19	11660161	11660161	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001299.4	+1	validated	p.S175	1.000	238	0%	342	19.3%	11	0%	-	-	-	HMMPfam_Calponin,PatternScan_CALPONIN_1,superfamily_Calponin-homology domain CH-domain
ZNF491	126069	genome.wustl.edu	37	19	11917052	11917052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152356.3	+1	validated	p.R95M	0.065	142	0%	166	28.9%	2	0%	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	superfamily_SSF57667
ZNF844	284391	genome.wustl.edu	37	19	12186689	12186689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136501.1	+1	provisional	p.P252S	0.916	87	0%	119	24.4%	6	0%	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	superfamily_SSF57667
ZNF20	7568	genome.wustl.edu	37	19	12243770	12243770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021143.2	-1	validated	p.R411C	0.001	132	0%	210	28.1%	27	0%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF20	7568	genome.wustl.edu	37	19	12244636	12244636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021143.2	-1	validated	p.T122M	0.001	498	0%	582	29.2%	15	0%	benign(0.006)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00355
ZNF136	7695	genome.wustl.edu	37	19	12298584	12298584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003437.2	+1	validated	p.R464Q	0.000	125	0%	173	16.8%	16	0%	possibly_damaging(0.739)	tolerated(1)	neutral(0.271)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF563	147837	genome.wustl.edu	37	19	12430202	12430202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145276.2	-1	validated	p.R213C	0.000	294	0.3%	411	32.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR83OS	51398	genome.wustl.edu	37	19	12779186	12779186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016145.3	-1	validated	p.T103M	1.000	22	0%	26	34.6%	519	0%	possibly_damaging(0.619)	deleterious(0.01)	deleterious(0.621)	HMMPfam_UPF0139
HOOK2	29911	genome.wustl.edu	37	19	12883472	12883472	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013312.2	-1	validated	p.T137	0.274	116	0%	375	30.1%	33	0%	-	-	-	HMMPfam_HOOK
RNASEH2A	10535	genome.wustl.edu	37	19	12920925	12920925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006397.2	+1	reviewed	p.A151V	0.943	77	0%	189	38.1%	182	0%	benign(0.243)	tolerated(0.15)	neutral(0.266)	HMMPfam_RNase_HII,superfamily_Ribonuclease H-like
RTBDN	83546	genome.wustl.edu	37	19	12940714	12940714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031429.1	-1	provisional	p.A59V	0.044	38	0%	38	10.5%	0	-	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	HMMPfam_Folate_rec
NFIX	4784	genome.wustl.edu	37	19	13184760	13184760	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002501.2	+1	validated	p.A246	0.824	30	0%	49	24.5%	209	0%	unknown(0)	-	-	HMMPfam_CTF_NFI
TRMT1	55621	genome.wustl.edu	37	19	13216131	13216131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001136035.2	-1	validated	p.A595T	0.390	21	0%	16	37.5%	58	0%	benign(0.016)	tolerated(0.35)	neutral(0.021)	superfamily_CCCH zinc finger
CACNA1A	773	genome.wustl.edu	37	19	13414688	13414688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127222.1	-1	reviewed	p.G666D	0.999	64	0%	93	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PRKACA	5566	genome.wustl.edu	37	19	14213684	14213684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002730.3	-1	reviewed	p.R94C	1.000	45	0%	78	32.1%	138	0%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CD97	976	genome.wustl.edu	37	19	14512257	14512257	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_078481.2	+1	reviewed	p.A319	0.000	71	0%	80	33.8%	26	0%	-	-	-	NULL
PKN1	5585	genome.wustl.edu	37	19	14578529	14578529	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_213560.1	+1	reviewed	e14-1	0.936	37	0%	53	18.9%	0	-	-	-	-	-
PKN1	5585	genome.wustl.edu	37	19	14580564	14580564	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_213560.1	+1	reviewed	p.I724	1.000	41	0%	68	33.8%	541	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DNAJB1	3337	genome.wustl.edu	37	19	14627318	14627318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006145.1	-1	provisional	p.G251D	1.000	35	0%	87	32.2%	175	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
ZNF333	84449	genome.wustl.edu	37	19	14829689	14829689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032433.2	+1	validated	p.T517M	0.001	287	0%	357	30.8%	17	0%	possibly_damaging(0.745)	tolerated(0.22)	neutral(0.316)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CCDC105	126402	genome.wustl.edu	37	19	15132726	15132726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173482.2	+1	validated	p.A416T	0.330	41	0%	52	46.2%	0	-	possibly_damaging(0.677)	tolerated(0.08)	deleterious(0.541)	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15281330	15281330	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000435.2	-1	reviewed	p.P1642	0.505	8	0.000	31	0.258	39	0%	-	-	-	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15651343	15651343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173483.3	+1	reviewed	p.D252N	1.000	82	0%	94	30.9%	0	-	possibly_damaging(0.927)	deleterious(0.04)	deleterious(0.724)	HMMPfam_p450,superfamily_Cytochrome_P450
CALR3	125972	genome.wustl.edu	37	19	16590029	16590029	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145046.3	-1	validated	p.R356	0.000	72	0%	120	43.3%	1	0%	-	-	-	NULL
C19orf44	84167	genome.wustl.edu	37	19	16612032	16612032	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032207.2	+1	validated	p.A143	0.000	99	0%	210	31%	6	0%	-	-	-	NULL
C19orf44	84167	genome.wustl.edu	37	19	16614049	16614049	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032207.2	+1	validated	p.T311	0.000	70	0%	121	31.4%	8	0%	-	-	-	NULL
CHERP	10523	genome.wustl.edu	37	19	16630060	16630060	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006387.5	-1	validated	p.G887	0.081	21	0%	14	28.6%	106	0%	-	-	-	HMMPfam_G-patch,HMMSmart_SM00443
MED26	9441	genome.wustl.edu	37	19	16687312	16687312	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004831.3	-1	validated	p.V443	0.614	16	0%	26	34.6%	13	0%	-	-	-	NULL
NWD1	284434	genome.wustl.edu	37	19	16860397	16860397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007525.2	+1	validated	p.R180H	0.995	50	2%	38	31.6%	0	-	possibly_damaging(0.637)	tolerated(0.16)	neutral(0.282)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SIN3B	23309	genome.wustl.edu	37	19	16952630	16952630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015260.1	+1	provisional	p.P145S	0.012	72	0%	108	31.5%	24	0%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
CPAMD8	27151	genome.wustl.edu	37	19	17038984	17038984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015692.2	-1	validated	p.P1116S	0.027	47	0%	52	13.5%	0	-	possibly_damaging(0.513)	deleterious(0.04)	deleterious(0.521)	NULL
HAUS8	93323	genome.wustl.edu	37	19	17169497	17169497	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033417.1	-1	validated	p.E169	0.000	83	0%	129	24%	16	0%	-	-	-	NULL
MYO9B	4650	genome.wustl.edu	37	19	17316100	17316100	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004145.3	+1	reviewed	p.C1673	0.699	24	0%	37	27%	48	0%	-	-	-	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
USE1	55850	genome.wustl.edu	37	19	17330563	17330563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018467.3	+1	validated	p.V241I	1.000	42	0%	81	29.6%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Use1
BABAM1	29086	genome.wustl.edu	37	19	17384976	17384976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033549.1	+1	validated	p.A176T	0.841	28	0%	36	13.9%	259	0%	possibly_damaging(0.786)	tolerated(0.4)	neutral(0.310)	NULL
ANKLE1	126549	genome.wustl.edu	37	19	17394294	17394294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152363.4	+1	validated	p.A241T	0.021	25	0%	36	19.4%	2	0%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
ANO8	57719	genome.wustl.edu	37	19	17441792	17441792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020959.2	-1	validated	p.R280W	1.000	74	0%	87	31%	20	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PLVAP	83483	genome.wustl.edu	37	19	17488093	17488093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031310.1	-1	provisional	p.G2D	0.922	28	0%	19	36.8%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PV-1
SLC27A1	376497	genome.wustl.edu	37	19	17598003	17598003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198580.1	+1	provisional	p.H195Y	0.352	41	0%	46	19.6%	2	0%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_AMP-binding,superfamily_SSF56801
FCHO1	23149	genome.wustl.edu	37	19	17886876	17886876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015122.2	+1	validated	p.P363H	0.993	26	0%	21	52.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
B3GNT3	10331	genome.wustl.edu	37	19	17918980	17918980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014256.3	+1	reviewed	p.R122C	1.000	5	0.000	10	0.700	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
IL12RB1	3594	genome.wustl.edu	37	19	18174743	18174743	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005535.1	-1	reviewed	p.R521*	0.985	42	0%	45	24.4%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MAST3	23031	genome.wustl.edu	37	19	18245741	18245741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015016.1	+1	validated	p.V578M	1.000	30	0%	66	48.5%	4	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
KIAA1683	80726	genome.wustl.edu	37	19	18376678	18376678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145304.1	-1	validated	p.V558M	0.000	17	0%	17	35.3%	0	-	benign(0.041)	tolerated(0.16)	neutral(0.062)	NULL
LSM4	25804	genome.wustl.edu	37	19	18420599	18420599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012321.3	-1	validated	p.D73N	0.998	19	0%	21	47.6%	257	0%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	superfamily_Sm-like ribonucleoproteins
UPF1	5976	genome.wustl.edu	37	19	18968261	18968261	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002911.3	+1	reviewed	p.Q701*	1.000	6	0.000	22	0.364	54	0%	-	-	-	superfamily_SSF52540
DDX49	54555	genome.wustl.edu	37	19	19031437	19031437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019070.4	+1	validated	p.A55V	1.000	19	0%	35	28.6%	82	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
SUGP2	10147	genome.wustl.edu	37	19	19141793	19141793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017392.3	-1	reviewed	p.A30T	0.519	128	0%	203	32.5%	25	0%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	NULL
SLC25A42	284439	genome.wustl.edu	37	19	19206960	19206960	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178526.3	+1	validated	p.P9	0.002	23	0%	24	45.8%	4	0%	-	-	-	NULL
TMEM161A	54929	genome.wustl.edu	37	19	19243176	19243176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017814.1	-1	provisional	p.T143M	0.751	47	2.1%	125	38.4%	56	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Tmemb_161AB
RFXANK	8625	genome.wustl.edu	37	19	19309969	19309969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003721.2	+1	reviewed	p.G213D	0.999	32	0%	43	34.9%	332	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TM6SF2	53345	genome.wustl.edu	37	19	19381141	19381141	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000431465	-1	known	p.R104*	0.000	19	0%	34	41.2%	0	-	-	-	-	NULL
LPAR2	9170	genome.wustl.edu	37	19	19735372	19735372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004720.5	-1	reviewed	p.F250S	0.795	6	0.000	25	0.200	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
ATP13A1	57130	genome.wustl.edu	37	19	19760732	19760732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020410.2	-1	validated	p.R785C	0.987	6	0.000	6	0.667	82	2.4%	possibly_damaging(0.732)	deleterious(0.04)	deleterious(0.617)	superfamily_HAD-like
LOC100288321	100288321	genome.wustl.edu	37	19	19959563	19959563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343623.1	-1	model	p.P30H	0.035	177	0%	211	25.6%	0	-	-	-	-	NULL
ZNF93	81931	genome.wustl.edu	37	19	20045075	20045075	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031218.3	+1	validated	p.S437	0.000	521	0%	533	29.6%	49	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22155385	22155385	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007153.3	-1	provisional	p.V717	0.000	314	0%	348	30.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22272129	22272129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033468.2	+1	provisional	p.R526H	0.021	75	0%	186	33.9%	0	-	benign(0.008)	tolerated(0.61)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF676	163223	genome.wustl.edu	37	19	22363155	22363155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001411.2	-1	provisional	p.G455D	1.000	290	0%	386	28.5%	0	-	benign(0.131)	tolerated(0.05)	neutral(0.356)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF492	57615	genome.wustl.edu	37	19	22846706	22846706	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020855.2	+1	validated	p.L79V	0.012	79	0%	122	24.6%	1	0%	benign(0.064)	deleterious(0.03)	neutral(0.368)	NULL
ZNF99	7652	genome.wustl.edu	37	19	22939012	22939012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080409.1	-1	provisional	p.P1036S	1.000	181	0%	269	27.5%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22940096	22940096	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080409.1	-1	provisional	p.P745	0.290	312	0%	412	14.1%	0	-	-	-	-	superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22941377	22941377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080409.1	-1	provisional	p.I354T	0.024	210	0%	340	34.1%	0	-	benign(0.256)	tolerated(0.21)	neutral(0.070)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC646864	646864	genome.wustl.edu	37	19	23040684	23040684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001726885.1	+1	model	p.H360Y	0.988	163	0%	294	32.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836292	23836292	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138330.2	-1	validated	p.K481	0.041	231	0%	279	34.8%	28	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UQCRFS1	7386	genome.wustl.edu	37	19	29698683	29698683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006003.2	-1	validated	p.Q199H	1.000	259	0%	277	35%	240	0.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rieske,superfamily_Rieske_dom
ZNF536	9745	genome.wustl.edu	37	19	31039805	31039805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014717.1	+1	provisional	p.S1093	0.000	68	0%	54	29.6%	0	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769561	31769561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020856.2	-1	validated	p.A380T	1.000	175	0.6%	184	34.2%	2	0%	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33135373	33135373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032139.2	-1	validated	p.A128V	0.008	157	0%	188	34.6%	7	0%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
RHPN2	85415	genome.wustl.edu	37	19	33502643	33502643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033103.4	-1	reviewed	p.G179S	1.000	55	0%	63	31.7%	34	0%	possibly_damaging(0.571)	tolerated(0.55)	neutral(0.203)	HMMPfam_BRO1
SLC7A10	56301	genome.wustl.edu	37	19	33702064	33702064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000424731	-1	known	p.P100S	0.005	19	0%	12	33.3%	0	-	-	-	-	NULL
CHST8	64377	genome.wustl.edu	37	19	34263789	34263789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127895.1	+1	validated	p.R366W	0.001	7	0.000	22	0.318	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Sulfotransfer_2
KIAA0355	9710	genome.wustl.edu	37	19	34791597	34791597	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014686.3	+1	validated	p.I73	0.779	61	0%	70	28.6%	7	0%	-	-	-	NULL
KIAA0355	9710	genome.wustl.edu	37	19	34810970	34810970	+	Silent	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014686.3	+1	validated	p.G218	0.988	135	0%	150	20%	5	0%	-	-	-	NULL
KIAA0355	9710	genome.wustl.edu	37	19	34818752	34818752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014686.3	+1	validated	p.A308V	1.000	90	0%	98	12.2%	3	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
ZNF599	148103	genome.wustl.edu	37	19	35250684	35250684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007248.2	-1	validated	p.C341Y	0.974	91	0%	106	38.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF30	90075	genome.wustl.edu	37	19	35435255	35435255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099437.1	+1	validated	p.G463D	0.999	120	0%	185	10.3%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HPN	3249	genome.wustl.edu	37	19	35556501	35556501	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002151.2	+1	reviewed	p.C322	1.000	54	0%	43	11.6%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
FFAR1	2864	genome.wustl.edu	37	19	35843115	35843115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005303.2	+1	reviewed	p.R221W	0.019	6	0.000	8	0.500	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_7tm_1,superfamily_SSF81321
ATP4A	495	genome.wustl.edu	37	19	36049581	36049581	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000704.2	-1	reviewed	p.T421	0.997	16	0%	18	27.8%	2	0%	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP4A	495	genome.wustl.edu	37	19	36050877	36050877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000704.2	-1	reviewed	p.A296T	0.654	161	0%	252	30.6%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
HAUS5	23354	genome.wustl.edu	37	19	36110372	36110372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015302.1	+1	validated	p.A409V	1.000	28	0%	22	22.7%	17	0%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	NULL
COX6B1	1340	genome.wustl.edu	37	19	36142150	36142150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001863.4	+1	reviewed	p.A2V	0.993	77	0%	111	11.7%	948	0%	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36268769	36268769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052948.3	+1	reviewed	p.A50T	1.000	47	0%	62	37.1%	5	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36278502	36278502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052948.3	+1	reviewed	p.A851V	0.000	20	0%	20	45%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
LOC100289119	100289119	genome.wustl.edu	37	19	36297496	36297496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343676.1	+1	model	p.V198I	0.976	64	0%	102	48%	0	-	-	-	-	NULL
CLIP3	25999	genome.wustl.edu	37	19	36508779	36508779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015526.1	-1	provisional	p.R433H	1.000	120	0%	113	13.3%	8	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain
WDR62	284403	genome.wustl.edu	37	19	36582182	36582182	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001083961.1	+1	validated	p.G705	0.996	24	0%	31	22.6%	14	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZNF565	147929	genome.wustl.edu	37	19	36686038	36686038	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042474.1	-1	validated	p.D10	1.000	169	0%	265	12.8%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZFP82	284406	genome.wustl.edu	37	19	36883858	36883858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133466.2	-1	provisional	p.R462C	0.005	232	0%	290	37.6%	11	0%	probably_damaging(0.983)	tolerated(0.21)	deleterious(0.473)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF260	339324	genome.wustl.edu	37	19	37005768	37005768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012756.2	-1	validated	p.R125G	0.014	204	0%	320	34.1%	30	0%	benign(0.009)	tolerated(0.39)	neutral(0.017)	HMMSmart_ZnF_C2H2
ZNF529	57711	genome.wustl.edu	37	19	37037882	37037882	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145649.1	-1	validated	p.R526	0.833	217	0%	283	12.7%	8	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37619424	37619424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144689.3	+1	provisional	p.A511T	0.737	152	0%	202	38.6%	14	0%	probably_damaging(0.955)	tolerated(0.13)	deleterious(0.651)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF383	163087	genome.wustl.edu	37	19	37733756	37733756	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152604.1	+1	provisional	p.F206	0.003	123	0%	176	13.1%	5	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF793	390927	genome.wustl.edu	37	19	38028241	38028241	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013659.2	+1	validated	p.H227	0.005	35	0%	49	24.5%	5	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DPF1	8193	genome.wustl.edu	37	19	38708477	38708477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135155.1	-1	validated	p.A213T	1.000	22	0%	25	40%	0	-	benign(0.008)	tolerated(0.25)	neutral(0.037)	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38851266	38851266	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021185.4	+1	validated	p.Y582	0.080	114	0%	191	27.7%	0	-	-	-	-	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38853059	38853059	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021185.4	+1	validated	p.G734A	0.022	86	0%	134	14.9%	0	-	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38860631	38860631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021185.4	+1	validated	p.A1014T	1.000	95	0%	222	23.9%	1	0%	benign(0.061)	deleterious(0.05)	neutral(0.349)	NULL
RASGRP4	115727	genome.wustl.edu	37	19	38901885	38901885	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_170604.2	-1	reviewed	p.C574	0.998	17	0%	21	33.3%	0	-	unknown(0)	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
RYR1	6261	genome.wustl.edu	37	19	38976332	38976332	+	Silent	SNP	C	C	T	rs34169029	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000540.2	+1	reviewed	p.R1679	0.999	46	0%	99	20.2%	0	-	-	-	-	NULL
MAP4K1	11184	genome.wustl.edu	37	19	39108016	39108016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007181.4	-1	validated	p.A76T	1.000	68	0%	124	30.6%	1	0%	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ECH1	1891	genome.wustl.edu	37	19	39308154	39308154	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001398.2	-1	reviewed	p.R137	0.361	19	0%	25	36%	222	0%	-	-	-	HMMPfam_ECH,superfamily_SSF52096
RINL	126432	genome.wustl.edu	37	19	39360333	39360333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198445.2	-1	provisional	p.A338T	1.000	20	0%	24	41.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VPS9,superfamily_SSF109993
SARS2	54938	genome.wustl.edu	37	19	39412715	39412715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000430193	-1	known	p.R133W	0.000	31	0%	86	34.9%	3	0%	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	NULL
NCCRP1	342897	genome.wustl.edu	37	19	39691013	39691013	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001414.1	+1	provisional	p.C192	0.069	43	0%	37	18.9%	1	0%	-	-	-	HMMPfam_FBA,superfamily_Gal_bind_like
IL28B	282617	genome.wustl.edu	37	19	39734324	39734324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_172139.2	-1	reviewed	p.R180H	0.001	17	0%	16	31.2%	0	-	possibly_damaging(0.785)	tolerated(0.21)	neutral(0.338)	NULL
DYRK1B	9149	genome.wustl.edu	37	19	40318000	40318000	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004714.1	-1	reviewed	p.A340	0.412	39	0%	35	37.1%	24	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FCGBP	8857	genome.wustl.edu	37	19	40368321	40368321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003890.2	-1	validated	p.R4343W	1.000	85	0%	157	9.6%	5	0%	unknown(0)	deleterious(0)	-	HMMPfam_C8
FCGBP	8857	genome.wustl.edu	37	19	40368741	40368741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003890.2	-1	validated	p.V4203M	0.449	221	0%	451	12.6%	14	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40376756	40376756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003890.2	-1	validated	p.C3889Y	0.998	93	0%	156	12.8%	3	0%	unknown(0)	deleterious(0)	-	HMMPfam_C8
FCGBP	8857	genome.wustl.edu	37	19	40433705	40433705	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003890.2	-1	validated	p.G188	0.062	90	0%	139	36.7%	1	0%	-	-	-	NULL
ZNF546	339327	genome.wustl.edu	37	19	40514453	40514453	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178544.3	+1	validated	p.G125	0.025	231	0%	253	32.4%	1	0%	-	-	-	NULL
ZNF780A	284323	genome.wustl.edu	37	19	40587791	40587791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142577.1	-1	validated	p.T57M	0.000	298	0%	380	32.6%	5	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
AKT2	208	genome.wustl.edu	37	19	40748452	40748452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001626.3	-1	reviewed	p.R144W	0.912	31	0%	41	17.1%	66	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_Kinase_like
PRX	57716	genome.wustl.edu	37	19	40900012	40900012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181882.2	-1	reviewed	p.S1416F	1.000	129	0%	144	30.6%	2	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
PRX	57716	genome.wustl.edu	37	19	40901301	40901301	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181882.2	-1	reviewed	p.L986	0.991	91	0%	102	12.7%	1	0%	-	-	-	NULL
SERTAD3	29946	genome.wustl.edu	37	19	40947408	40947408	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013368.3	-1	reviewed	p.L194	0.943	96	0%	237	13.1%	14	0%	-	-	-	NULL
BLVRB	645	genome.wustl.edu	37	19	40953835	40953835	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000713.2	-1	validated	p.Y194	0.398	23	0%	30	30%	103	0%	-	-	-	superfamily_NAD(P)-bd
SPTBN4	57731	genome.wustl.edu	37	19	41003492	41003492	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020971.2	+1	reviewed	p.A255	0.995	38	0%	61	29.5%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
SPTBN4	57731	genome.wustl.edu	37	19	41029418	41029418	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020971.2	+1	reviewed	p.D1243	0.998	17	0%	39	28.2%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
C19orf54	284325	genome.wustl.edu	37	19	41248638	41248638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000339153	-1	known	p.A111V	0.773	7	0.000	16	0.500	17	0%	-	-	-	NULL
AXL	558	genome.wustl.edu	37	19	41726721	41726721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021913.3	+1	reviewed	p.G89D	0.980	20	0%	62	32.3%	4	0%	benign(0.198)	tolerated(0.71)	neutral(0.021)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CEACAM21	90273	genome.wustl.edu	37	19	42083574	42083574	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098506.1	+1	validated	p.N29	0.001	146	0%	127	26.8%	0	-	-	-	-	HMMPfam_V-set
ARHGEF1	9138	genome.wustl.edu	37	19	42409330	42409330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199002.1	+1	reviewed	p.W766C	1.000	35	0%	52	32.7%	91	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PH,superfamily_SSF50729
LOC390937	390937	genome.wustl.edu	37	19	42414063	42414063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_372730.7	-1	model	p.R85H	1.000	21	0%	22	40.9%	0	-	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
GRIK5	2901	genome.wustl.edu	37	19	42507545	42507545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002088.3	-1	reviewed	p.A818V	1.000	44	0%	98	33.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lig_chan
ZNF574	64763	genome.wustl.edu	37	19	42584467	42584467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022752.5	+1	validated	p.R570H	1.000	109	0%	171	32.7%	47	0%	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GSK3A	2931	genome.wustl.edu	37	19	42736683	42736683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019884.2	-1	validated	p.R417H	1.000	24	0%	59	35.6%	260	0%	benign(0.398)	deleterious(0.01)	deleterious(0.534)	superfamily_Kinase_like
GSK3A	2931	genome.wustl.edu	37	19	42738561	42738561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019884.2	-1	validated	p.R283H	1.000	59	0%	86	30.2%	173	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ERF	2077	genome.wustl.edu	37	19	42754077	42754077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006494.2	-1	validated	p.R92H	1.000	35	0%	102	17.6%	117	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
CIC	23152	genome.wustl.edu	37	19	42791752	42791752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015125.3	+1	validated	p.R213Q	1.000	46	0%	37	35.1%	44	0%	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
TMEM145	284339	genome.wustl.edu	37	19	42821975	42821975	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173633.2	+1	validated	p.R339*	1.000	52	0%	121	31.4%	0	-	-	-	-	HMMPfam_GpcrRhopsn4
CEACAM8	1088	genome.wustl.edu	37	19	43098919	43098919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001816.3	-1	validated	p.T21I	0.218	306	0%	382	37.7%	0	-	possibly_damaging(0.61)	deleterious(0)	deleterious(0.656)	HMMPfam_V-set
PSG2	5670	genome.wustl.edu	37	19	43570712	43570712	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031246.2	-1	validated	p.T335	0.000	274	0%	406	13.5%	0	-	-	-	-	NULL
ZNF576	79177	genome.wustl.edu	37	19	44103048	44103048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145347.1	+1	validated	p.R51C	1.000	96	0%	107	30.8%	20	0%	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
PLAUR	5329	genome.wustl.edu	37	19	44159707	44159707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002659.2	-1	reviewed	p.R164H	0.019	83	0%	148	35.1%	27	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
ZNF45	7596	genome.wustl.edu	37	19	44418642	44418642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003425.3	-1	validated	p.R316C	0.000	167	0%	175	27.4%	19	0%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF45	7596	genome.wustl.edu	37	19	44423064	44423064	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003425.3	-1	validated	p.L65	0.064	95	0%	86	33.7%	17	0%	-	-	-	HMMSmart_KRAB
ZNF155	7711	genome.wustl.edu	37	19	44500938	44500938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003445.2	+1	validated	p.H310R	1.000	321	0%	362	38.1%	6	0%	unknown(0)	tolerated(0.14)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF222	7673	genome.wustl.edu	37	19	44536425	44536425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001129996.1	+1	validated	p.P240S	0.988	290	0%	307	15.3%	5	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_C2H2 and C2HC zinc fingers
ZNF223	7766	genome.wustl.edu	37	19	44564951	44564951	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013361.4	+1	validated	p.K64	0.000	338	0%	317	12.3%	8	0%	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF223	7766	genome.wustl.edu	37	19	44570413	44570413	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013361.4	+1	validated	p.G144	0.957	180	0%	234	12.8%	6	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF284	342909	genome.wustl.edu	37	19	44590236	44590236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037813.2	+1	provisional	p.R202H	0.000	156	0%	213	33.8%	5	0%	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_SSF57667
ZNF284	342909	genome.wustl.edu	37	19	44590838	44590838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037813.2	+1	provisional	p.G403R	0.004	307	0%	413	32.7%	7	0%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57667
ZNF235	9310	genome.wustl.edu	37	19	44792713	44792713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004234.4	-1	reviewed	p.A292V	0.000	152	0.7%	163	31.3%	4	0%	benign(0)	tolerated(0.35)	neutral(0.021)	superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44932920	44932920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014518.2	-1	validated	p.T679M	0.997	207	0%	228	39%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
BCAM	4059	genome.wustl.edu	37	19	45315507	45315507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005581.3	+1	reviewed	p.R98C	0.969	16	0%	31	29%	25	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CLPTM1	1209	genome.wustl.edu	37	19	45495916	45495916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001294.1	+1	provisional	p.D591N	1.000	46	0%	67	10.4%	265	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CLPTM1
ERCC2	2068	genome.wustl.edu	37	19	45872376	45872376	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000400.3	-1	reviewed	p.G45	1.000	57	0%	99	45.5%	16	0%	-	-	-	HMMSmart_DEXDc2,superfamily_SSF52540
CD3EAP	10849	genome.wustl.edu	37	19	45912321	45912321	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012099.1	+1	validated	p.A365	0.001	34	0%	84	35.7%	30	0%	-	-	-	NULL
CD3EAP	10849	genome.wustl.edu	37	19	45912678	45912678	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012099.1	+1	validated	p.P484	0.000	23	0%	35	37.1%	25	0%	-	-	-	NULL
PPM1N	147699	genome.wustl.edu	37	19	46005310	46005310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000401593	+1	known	p.R92H	0.000	22	0%	55	20%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
VASP	7408	genome.wustl.edu	37	19	46029421	46029421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003370.3	+1	reviewed	p.R377W	1.000	35	0%	77	33.8%	174	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_VASP_tetra
EML2	24139	genome.wustl.edu	37	19	46116905	46116905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012155.1	-1	provisional	p.G573V	1.000	78	0%	103	25.2%	34	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_Peptidase_S9A_N
SYMPK	8189	genome.wustl.edu	37	19	46328458	46328458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004819.2	-1	reviewed	p.R821W	1.000	20	0%	34	32.4%	68	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
SYMPK	8189	genome.wustl.edu	37	19	46352130	46352130	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004819.2	-1	reviewed	p.R102*	1.000	56	0%	270	75.9%	60	0%	-	-	-	superfamily_ARM repeat
PGLYRP1	8993	genome.wustl.edu	37	19	46522847	46522847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005091.2	-1	validated	p.A116T	0.242	74	0%	101	22.8%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP
PPP5C	5536	genome.wustl.edu	37	19	46891975	46891975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006247.2	+1	provisional	p.A448T	1.000	154	0%	169	30.2%	207	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
STRN4	29888	genome.wustl.edu	37	19	47242057	47242057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039877.1	-1	validated	p.A124V	1.000	36	0%	56	35.7%	77	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Striatin
ARHGAP35	2909	genome.wustl.edu	37	19	47423229	47423229	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004491.4	+1	reviewed	p.R433*	0.723	172	0%	191	34.6%	29	0%	-	-	-	HMMSmart_SM00441
NPAS1	4861	genome.wustl.edu	37	19	47542340	47542340	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002517.2	+1	reviewed	p.R245	0.837	30	0%	43	30.2%	0	-	-	-	-	NULL
DHX34	9704	genome.wustl.edu	37	19	47884183	47884183	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014681.5	+1	reviewed	p.T1031	0.153	59	0%	41	19.5%	34	0%	-	-	-	NULL
ENSG00000245602	0	genome.wustl.edu	37	19	47998938	47998938	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000500835	+1	known	NULL	0.000	35	0%	34	11.8%	3	0%	-	-	-	-
ELSPBP1	64100	genome.wustl.edu	37	19	48511931	48511931	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022142.3	+1	reviewed	p.R3*	0.000	47	0%	82	12.2%	0	-	-	-	-	NULL
CARD8	22900	genome.wustl.edu	37	19	48735210	48735210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000377461	-1	known	p.S16	0.001	28	0%	36	33.3%	0	-	-	-	-	NULL
ZNF114	163071	genome.wustl.edu	37	19	48789580	48789580	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153608.1	+1	provisional	p.D233	0.000	138	0%	236	32.6%	1	0%	-	-	-	NULL
CCDC114	93233	genome.wustl.edu	37	19	48806343	48806343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144577.3	-1	validated	p.R296H	0.999	81	0%	89	12.4%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TMEM143	55260	genome.wustl.edu	37	19	48845966	48845966	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018273.2	-1	provisional	p.L266	1.000	48	0%	64	35.9%	3	0%	-	-	-	NULL
CYTH2	9266	genome.wustl.edu	37	19	48981748	48981748	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017457.4	+1	reviewed	p.C338	1.000	34	0%	71	35.2%	171	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SPHK2	56848	genome.wustl.edu	37	19	49131993	49131993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020126.3	+1	provisional	p.R310W	1.000	17	0%	40	55%	64	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DAGK_cat,HMMSmart_SM00046
FUT1	2523	genome.wustl.edu	37	19	49253634	49253634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000148.3	-1	reviewed	p.H302R	1.000	25	0%	44	29.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_11
FGF21	26291	genome.wustl.edu	37	19	49261237	49261237	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019113.2	+1	reviewed	p.D130	0.408	163	0%	188	10.6%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like
BCAT2	587	genome.wustl.edu	37	19	49300263	49300263	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001190.3	-1	reviewed	p.T285	0.631	77	0%	119	22.7%	50	0%	-	-	-	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes,PatternScan_AA_TRANSFER_CLASS_4
LOC100287563	100287563	genome.wustl.edu	37	19	49610982	49610982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343692.1	-1	model	p.R217C	0.154	4	0.000	14	0.500	0	-	-	-	-	NULL
TRPM4	54795	genome.wustl.edu	37	19	49671815	49671815	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017636.2	+1	provisional	p.S206	0.268	21	0%	21	23.8%	17	0%	-	-	-	NULL
TRPM4	54795	genome.wustl.edu	37	19	49714016	49714016	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017636.2	+1	provisional	p.S1126	0.262	28	0%	34	32.4%	53	0%	-	-	-	NULL
PIH1D1	55011	genome.wustl.edu	37	19	49949870	49949870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017916.2	-1	validated	p.A257T	0.069	32	0%	48	22.9%	147	0%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_PIH1
NOSIP	51070	genome.wustl.edu	37	19	50059077	50059077	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015953.3	-1	provisional	p.G279	0.880	17	0%	19	36.8%	90	0%	-	-	-	NULL
NOSIP	51070	genome.wustl.edu	37	19	50059822	50059822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015953.3	-1	provisional	p.A237T	1.000	15	0%	13	53.8%	143	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_SSF57850
PRMT1	3276	genome.wustl.edu	37	19	50189881	50189881	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001536.3	+1	validated	p.T310	0.823	11	0%	19	36.8%	648	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT1	3276	genome.wustl.edu	37	19	50189972	50189972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001536.3	+1	validated	p.A341T	0.996	18	0%	23	30.4%	728	0.1%	benign(0.007)	tolerated(0.32)	neutral(0.024)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TSKS	60385	genome.wustl.edu	37	19	50245203	50245203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021733.1	-1	reviewed	p.V479A	1.000	76	0%	138	39.9%	0	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
SIGLEC11	114132	genome.wustl.edu	37	19	50455599	50455599	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000426971	-1	known	p.A462V	0.003	69	0%	67	32.8%	0	-	-	-	-	NULL
ZNF473	25888	genome.wustl.edu	37	19	50542498	50542498	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006656.1	+1	validated	p.T30	0.284	81	0%	120	25.8%	12	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
MYH14	79784	genome.wustl.edu	37	19	50752261	50752261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077186.1	+1	reviewed	p.E449D	1.000	12	0%	19	31.6%	21	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH14	79784	genome.wustl.edu	37	19	50774730	50774730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077186.1	+1	reviewed	p.T1000M	0.985	32	0%	19	31.6%	63	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
POLD1	5424	genome.wustl.edu	37	19	50917085	50917085	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002691.2	+1	validated	p.A779	0.002	32	0%	63	23.8%	84	0%	-	-	-	HMMPfam_DNA_pol_B,superfamily_SSF56672
MYBPC2	4606	genome.wustl.edu	37	19	50945544	50945544	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004533.3	+1	validated	p.N292	0.823	28	0%	41	34.1%	1	0%	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
KLK7	5650	genome.wustl.edu	37	19	51485146	51485146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005046.2	-1	reviewed	p.G33D	0.217	76	0%	61	11.5%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ETFB	2109	genome.wustl.edu	37	19	51857698	51857698	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001014763.1	-1	reviewed	p.L65	0.001	31	0%	45	37.8%	0	-	-	-	-	NULL
SIGLEC10	89790	genome.wustl.edu	37	19	51920368	51920368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033130.4	-1	validated	p.F130S	0.000	151	0%	193	11.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51920434	51920434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033130.4	-1	validated	p.A108V	0.000	159	0%	171	22.8%	1	0%	benign(0.028)	tolerated(0.08)	neutral(0.301)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CEACAM18	729767	genome.wustl.edu	37	19	51983676	51983676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080405.1	+1	provisional	p.A109T	0.000	24	0%	43	27.9%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC6	946	genome.wustl.edu	37	19	52034156	52034156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001245.5	-1	validated	p.S162I	0.000	147	0%	110	10.9%	0	-	benign(0.019)	tolerated(0.19)	neutral(0.051)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SIGLEC6	946	genome.wustl.edu	37	19	52034451	52034451	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001245.5	-1	validated	p.Y130	0.000	188	0%	240	34.6%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF175	7728	genome.wustl.edu	37	19	52090640	52090640	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007147.2	+1	validated	p.T352	0.110	198	0%	342	13.7%	6	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MIR99B	407056	genome.wustl.edu	37	19	52195901	52195901	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000384819	+1	known	NULL	1.000	38	0%	28	50%	0	-	-	-	-	-
HAS1	3036	genome.wustl.edu	37	19	52217107	52217107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001523.2	-1	reviewed	p.C437Y	1.000	27	0%	42	16.7%	0	-	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394796	52394796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_023074.3	-1	validated	p.R198I	0.001	371	0%	358	31.3%	9	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF613	79898	genome.wustl.edu	37	19	52448815	52448815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031721.3	+1	validated	p.R560H	0.000	64	0%	140	30%	18	0%	possibly_damaging(0.795)	tolerated(0.12)	deleterious(0.559)	NULL
ZNF613	79898	genome.wustl.edu	37	19	52448902	52448902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031721.3	+1	validated	p.A589V	0.000	67	0%	141	27%	10	0%	benign(0.015)	tolerated(0.19)	neutral(0.050)	NULL
ZNF432	9668	genome.wustl.edu	37	19	52538429	52538429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014650.2	-1	provisional	p.G168D	0.001	90	0%	121	35.5%	6	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
PPP2R1A	5518	genome.wustl.edu	37	19	52714733	52714733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014225.5	+1	reviewed	p.A164V	1.000	109	0%	70	12.9%	294	0.3%	benign(0.006)	tolerated(0.22)	neutral(0.042)	HMMPfam_HEAT,superfamily_ARM repeat
ZNF610	162963	genome.wustl.edu	37	19	52857557	52857557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173530.2	+1	validated	p.P82S	0.005	142	0%	190	30.5%	8	0%	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	HMMSmart_SM00349
ZNF528	84436	genome.wustl.edu	37	19	52909774	52909774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032423.2	+1	validated	p.C50Y	0.000	262	0%	291	29.6%	31	0%	benign(0.008)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF808	388558	genome.wustl.edu	37	19	53058411	53058411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039886.3	+1	validated	p.A748T	0.000	526	0%	578	29.4%	11	0%	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53270389	53270389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198457.2	-1	validated	p.C207Y	0.000	507	0.2%	709	15.9%	13	0%	benign(0.009)	tolerated(0.15)	neutral(0.241)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF468	90333	genome.wustl.edu	37	19	53352446	53352446	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008801.1	-1	validated	p.D12	0.995	360	0.3%	484	27.7%	13	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF665	79788	genome.wustl.edu	37	19	53669234	53669234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024733.3	-1	provisional	p.S170F	0.000	197	0%	261	12.6%	2	0%	possibly_damaging(0.835)	deleterious(0.02)	deleterious(0.702)	NULL
VN1R2	317701	genome.wustl.edu	37	19	53762167	53762167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173856.2	+1	validated	p.T180I	0.244	67	0%	114	43.9%	0	-	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	HMMPfam_V1R,superfamily_SSF81321
MYADM	91663	genome.wustl.edu	37	19	54377401	54377401	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001020818.1	+1	validated	p.C206	0.998	104	0%	221	40.3%	173	0%	-	-	-	HMMPfam_MARVEL
CACNG6	59285	genome.wustl.edu	37	19	54503007	54503007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145814.1	+1	reviewed	p.V176I	0.161	123	0%	119	39.5%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
NDUFA3	4696	genome.wustl.edu	37	19	54609005	54609005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000417903	+1	known	p.V63I	0.000	9	0.000	19	0.368	21	0%	unknown(0)	-	-	NULL
TFPT	29844	genome.wustl.edu	37	19	54611531	54611531	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013342.3	-1	validated	p.T148	0.864	17	0%	19	36.8%	61	0%	-	-	-	NULL
CNOT3	4849	genome.wustl.edu	37	19	54655997	54655997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014516.2	+1	validated	p.A547V	1.000	32	0%	81	23.5%	81	1.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CNOT3	4849	genome.wustl.edu	37	19	54657685	54657685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000411507	+1	known	p.A72V	0.000	15	0%	30	46.7%	13	0%	benign(0.205)	deleterious(0.03)	neutral(0.385)	NULL
MBOAT7	79143	genome.wustl.edu	37	19	54677944	54677944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024298.3	-1	reviewed	p.R405C	1.000	51	0%	84	15.5%	177	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MBOAT
MBOAT7	79143	genome.wustl.edu	37	19	54678088	54678088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024298.3	-1	reviewed	p.G357S	1.000	18	0%	39	33.3%	124	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBOAT
MBOAT7	79143	genome.wustl.edu	37	19	54691082	54691082	+	Silent	SNP	C	C	T	rs181951947	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024298.3	-1	reviewed	p.T98	0.883	7	0.000	9	0.444	70	0%	-	-	-	HMMPfam_MBOAT
LILRB5	10990	genome.wustl.edu	37	19	54760357	54760357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081442.1	-1	reviewed	p.A117V	0.999	76	0%	65	35.4%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRB5	10990	genome.wustl.edu	37	19	54760848	54760848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081442.1	-1	reviewed	p.G16S	0.011	53	0%	40	15%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
LENG8	114823	genome.wustl.edu	37	19	54963832	54963832	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052925.2	+1	validated	p.Y72	0.160	28	0%	43	27.9%	18	0%	-	-	-	NULL
LENG8	114823	genome.wustl.edu	37	19	54967913	54967913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052925.2	+1	validated	p.R515H	1.000	9	0.000	11	0.636	26	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LILRA1	11024	genome.wustl.edu	37	19	55106661	55106661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006863.1	+1	provisional	p.G152D	0.000	160	0%	103	14.6%	0	-	benign(0.03)	tolerated(1)	neutral(0.002)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LILRB4	11006	genome.wustl.edu	37	19	55175698	55175698	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006847.3	+1	reviewed	p.S139	0.005	225	0%	198	31.8%	12	0%	-	-	-	HMMPfam_ig,superfamily_Immunoglobulin
LILRB4	11006	genome.wustl.edu	37	19	55176265	55176265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006847.3	+1	reviewed	p.P224L	0.000	39	0%	44	38.6%	9	0%	possibly_damaging(0.722)	tolerated(0.11)	deleterious(0.534)	NULL
LILRB4	11006	genome.wustl.edu	37	19	55178180	55178180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006847.3	+1	reviewed	p.G341W	0.000	154	0%	144	13.9%	32	0%	possibly_damaging(0.721)	deleterious(0)	deleterious(0.706)	NULL
KIR2DL1	3802	genome.wustl.edu	37	19	55284950	55284950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014218.2	+1	reviewed	p.G79V	0.000	713	0%	906	16.9%	0	-	possibly_damaging(0.879)	deleterious(0.01)	deleterious(0.748)	HMMPfam_ig,superfamily_SSF48726
KIR2DL4	3805	genome.wustl.edu	37	19	55324689	55324689	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000396289	+1	known	p.S272	0.005	45	0%	62	74.2%	0	-	-	-	-	NULL
KIR3DL1	3811	genome.wustl.edu	37	19	55331326	55331326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013289.2	+1	reviewed	p.H172N	0.001	836	0%	1236	33.7%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NCR1	9437	genome.wustl.edu	37	19	55418077	55418077	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004829.5	+1	validated	p.N89	0.000	124	0%	137	35.8%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
TNNT1	7138	genome.wustl.edu	37	19	55656924	55656924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003283.4	-1	reviewed	p.R39H	1.000	328	0%	385	14.5%	11	0%	unknown(0)	deleterious(0)	-	NULL
PPP6R1	22870	genome.wustl.edu	37	19	55756537	55756537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014931.3	-1	validated	p.K190T	1.000	13	0%	19	21.1%	76	0%	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	HMMPfam_SAPS
TMEM150B	284417	genome.wustl.edu	37	19	55831431	55831431	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001085488.1	-1	provisional	p.G100	0.989	53	0%	78	16.7%	0	-	-	-	-	HMMPfam_Frag1
SUV420H2	84787	genome.wustl.edu	37	19	55853313	55853313	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032701.3	+1	validated	p.P3	0.100	8	0.000	13	0.462	29	0%	-	-	-	NULL
CCDC106	29903	genome.wustl.edu	37	19	56160421	56160421	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013301.2	+1	validated	p.D3	0.710	58	0%	74	13.5%	18	0%	-	-	-	NULL
NLRP13	126204	genome.wustl.edu	37	19	56416350	56416350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_176810.2	-1	validated	p.C859Y	0.008	117	0%	97	32%	0	-	possibly_damaging(0.863)	deleterious(0)	deleterious(0.778)	superfamily_SSF52047
NLRP8	126205	genome.wustl.edu	37	19	56466870	56466870	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_176811.2	+1	provisional	p.T482	0.000	220	0.5%	196	38.3%	0	-	-	-	-	NULL
ZSCAN5A	79149	genome.wustl.edu	37	19	56733196	56733196	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024303.1	-1	provisional	p.T413	0.000	76	0%	87	33.3%	3	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF835	90485	genome.wustl.edu	37	19	57176231	57176231	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005850.1	-1	provisional	p.C134	0.144	72	0%	57	28.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEG3	5178	genome.wustl.edu	37	19	57328485	57328485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006210.2	-1	reviewed	p.S442L	0.001	241	0%	298	30.9%	0	-	possibly_damaging(0.895)	tolerated(0.24)	neutral(0.390)	superfamily_C2H2 and C2HC zinc fingers
ZIM3	114026	genome.wustl.edu	37	19	57647341	57647341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_052882.1	-1	provisional	p.G122R	0.000	277	0%	501	37.7%	0	-	benign(0.004)	tolerated(0.54)	neutral(0.007)	NULL
ZNF264	9422	genome.wustl.edu	37	19	57723880	57723880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003417.4	+1	reviewed	p.R472H	0.000	109	0.9%	110	35.5%	8	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000246220	0	genome.wustl.edu	37	19	57932922	57932922	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000501492	-1	known	NULL	0.000	85	0%	120	35%	4	0%	-	-	-	-
ZNF772	400720	genome.wustl.edu	37	19	57985663	57985663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024596.2	-1	validated	p.G150D	0.971	92	0%	138	29%	4	0%	benign(0.201)	tolerated(0.26)	neutral(0.053)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58048770	58048770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153263.1	+1	provisional	p.T120M	0.000	196	0%	237	60.3%	8	0%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	superfamily_C2H2 and C2HC zinc fingers
ZNF211	10520	genome.wustl.edu	37	19	58152510	58152510	+	Missense_Mutation	SNP	C	C	T	rs191070229	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006385.3	+1	validated	p.A232V	0.000	174	0%	177	32.8%	5	0%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ZNF135	7694	genome.wustl.edu	37	19	58578245	58578245	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000391699	+1	known	p.A149V	0.012	33	0%	76	27.6%	10	0%	-	-	-	NULL
ZNF329	79673	genome.wustl.edu	37	19	58640157	58640157	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024620.3	-1	validated	p.K238	0.794	85	0%	152	40.1%	13	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF132	7691	genome.wustl.edu	37	19	58944880	58944880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003433.3	-1	validated	p.R644H	0.000	79	0%	143	15.4%	4	0%	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF324	25799	genome.wustl.edu	37	19	58982762	58982762	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014347.1	+1	provisional	p.T301	0.899	36	0%	41	41.5%	9	11.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000249146	0	genome.wustl.edu	37	19	59022426	59022426	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000514271	+1	known	NULL	0.004	15	0%	10	40%	1	0%	-	-	-	-
TRIB3	57761	genome.wustl.edu	37	20	368658	368658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021158.3	+1	reviewed	p.R2*	0.593	18	0%	22	45.5%	5	0%	-	-	-	NULL
TBC1D20	128637	genome.wustl.edu	37	20	419398	419398	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144628.2	-1	validated	p.L348	0.019	98	0%	159	30.8%	32	0%	-	-	-	NULL
RSPO4	343637	genome.wustl.edu	37	20	948601	948601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029871.3	-1	reviewed	p.R87M	1.000	157	0%	157	28.7%	0	-	probably_damaging(0.984)	tolerated(0.17)	deleterious(0.489)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
TMEM74B	55321	genome.wustl.edu	37	20	1161898	1161898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018354.1	-1	provisional	p.G122D	1.000	75	0%	104	34.6%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SNPH	9751	genome.wustl.edu	37	20	1286088	1286088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014723.2	+1	reviewed	p.T292I	1.000	22	0%	16	43.8%	0	-	benign(0.215)	tolerated(0.12)	neutral(0.282)	NULL
SIRPB1	10326	genome.wustl.edu	37	20	1558987	1558987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006065.3	-1	reviewed	p.R144C	0.050	181	0%	162	10.5%	0	-	probably_damaging(0.984)	tolerated(0.19)	deleterious(0.480)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIRPA	140885	genome.wustl.edu	37	20	1896020	1896020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001040022.1	+1	reviewed	p.Y119H	1.000	68	0%	73	9.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
TGM3	7053	genome.wustl.edu	37	20	2293648	2293648	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003245.3	+1	reviewed	p.Y215	0.005	136	0%	172	16.3%	0	-	-	-	-	superfamily_Cysteine proteinases
CPXM1	56265	genome.wustl.edu	37	20	2777270	2777270	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019609.4	-1	reviewed	p.C316	1.000	87	0%	115	25.2%	53	0%	-	-	-	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
PTPRA	5786	genome.wustl.edu	37	20	3007799	3007799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002836.3	+1	reviewed	p.R581W	1.000	107	0%	193	30.1%	84	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
C20orf194	25943	genome.wustl.edu	37	20	3268311	3268311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009984.1	-1	validated	p.R818H	1.000	153	0%	237	40.5%	4	0%	probably_damaging(0.972)	tolerated(0.11)	deleterious(0.685)	NULL
ATRN	8455	genome.wustl.edu	37	20	3565318	3565318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139321.2	+1	reviewed	p.T992I	1.000	132	0%	158	26.6%	46	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PSI,HMMSmart_SM00423
C20orf27	54976	genome.wustl.edu	37	20	3735052	3735052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039140.1	-1	validated	p.R164H	0.671	28	0%	36	38.9%	62	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAVS	57506	genome.wustl.edu	37	20	3843023	3843023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020746.3	+1	validated	p.Q196H	0.245	33	0%	62	30.6%	12	0%	benign(0.388)	deleterious(0.05)	deleterious(0.469)	NULL
ADRA1D	146	genome.wustl.edu	37	20	4202230	4202230	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000678.3	-1	reviewed	p.G553	0.147	51	0%	38	15.8%	0	-	-	-	-	NULL
PRNP	5621	genome.wustl.edu	37	20	4680430	4680430	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000311.3	+1	reviewed	p.T188	0.002	54	0%	86	31.4%	59	0%	-	-	-	HMMPfam_Prion,HMMSmart_SM00157,superfamily_Prion-like
PROKR2	128674	genome.wustl.edu	37	20	5294900	5294900	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144773.2	-1	reviewed	p.E39A	0.999	106	0%	127	24.4%	0	-	possibly_damaging(0.548)	tolerated(0.2)	neutral(0.235)	superfamily_SSF81321
PLCB1	23236	genome.wustl.edu	37	20	8769319	8769319	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015192.2	+1	reviewed	p.R1076	0.997	146	0%	160	26.9%	20	0%	-	-	-	HMMPfam_PLC-beta_C
PAK7	57144	genome.wustl.edu	37	20	9560818	9560818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020341.3	-1	reviewed	p.S322P	1.000	373	0%	362	37.8%	0	-	unknown(0)	deleterious(0.05)	-	NULL
JAG1	182	genome.wustl.edu	37	20	10621881	10621881	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000214.2	-1	reviewed	p.T976	0.003	106	0%	119	34.5%	6	0%	-	-	-	NULL
JAG1	182	genome.wustl.edu	37	20	10622144	10622144	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000214.2	-1	reviewed	p.N960	1.000	167	0%	177	39.5%	4	0%	-	-	-	NULL
BTBD3	22903	genome.wustl.edu	37	20	11903866	11903866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014962.2	+1	validated	p.R374H	1.000	74	0%	100	12%	60	0%	possibly_damaging(0.868)	tolerated(0.12)	deleterious(0.598)	NULL
ISM1	140862	genome.wustl.edu	37	20	13260503	13260503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080826.1	+1	validated	p.P201S	1.000	42	0%	55	47.3%	22	0%	benign(0.344)	tolerated(0.23)	neutral(0.150)	NULL
TASP1	55617	genome.wustl.edu	37	20	13604119	13604119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017714.2	-1	reviewed	p.V86I	1.000	121	0%	140	27.1%	12	0%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Asparaginase_2,superfamily_SSF56235
FLRT3	23767	genome.wustl.edu	37	20	14307596	14307596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013281.2	-1	reviewed	p.R186H	1.000	95	0%	167	13.2%	4	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_LRR_1,superfamily_SSF52058
KIF16B	55614	genome.wustl.edu	37	20	16254033	16254033	+	Silent	SNP	G	G	A	rs181743010	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024704.3	-1	validated	p.S1273	0.970	36	0%	60	21.7%	1	0%	-	-	-	HMMSmart_SM00312
PCSK2	5126	genome.wustl.edu	37	20	17434458	17434458	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002594.2	+1	reviewed	p.C319	0.890	50	0%	42	14.3%	1	100%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
DSTN	11034	genome.wustl.edu	37	20	17585236	17585236	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006870.3	+1	reviewed	p.I116	1.000	71	0%	106	31.1%	716	0%	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
RRBP1	6238	genome.wustl.edu	37	20	17639428	17639428	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000246043	-1	known	p.S575	0.113	107	0%	168	26.8%	111	0.9%	-	-	-	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18143487	18143487	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020536.4	+1	reviewed	p.D523	0.996	133	0%	194	30.9%	41	0%	-	-	-	NULL
DZANK1	55184	genome.wustl.edu	37	20	18379199	18379199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099407.1	-1	validated	p.R502W	1.000	207	0%	210	27.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18435894	18435894	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099407.1	-1	validated	p.R125	1.000	39	0%	42	11.9%	1	0%	-	-	-	NULL
SEC23B	10483	genome.wustl.edu	37	20	18522972	18522972	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006363.4	+1	reviewed	p.G479	0.173	279	0%	217	37.8%	159	0%	-	-	-	HMMPfam_Sec23_BS,superfamily_SSF81995
SEC23B	10483	genome.wustl.edu	37	20	18523739	18523739	+	Missense_Mutation	SNP	C	C	T	rs121918223		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006363.4	+1	reviewed	p.R530W	0.998	113	0%	99	13.1%	117	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec23_helical,superfamily_Sec23_helical
DTD1	92675	genome.wustl.edu	37	20	18724873	18724873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080820.4	+1	reviewed	p.V203M	1.000	55	0%	33	39.4%	99	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
CRNKL1	51340	genome.wustl.edu	37	20	20024161	20024161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016652.4	-1	reviewed	p.R477K	1.000	279	0%	261	11.1%	56	0%	benign(0.067)	tolerated(0.35)	neutral(0.025)	superfamily_TPR-like
C20orf26	26074	genome.wustl.edu	37	20	20079389	20079389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015585.3	+1	validated	p.G264R	0.999	267	0%	236	12.7%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
C20orf26	26074	genome.wustl.edu	37	20	20177230	20177230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015585.3	+1	validated	p.R536Q	0.887	200	0%	229	27.5%	0	-	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	superfamily_Acyl-CoA N-acyltransferases (Nat)
XRN2	22803	genome.wustl.edu	37	20	21309266	21309266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012255.3	+1	reviewed	p.A129S	0.983	69	0%	113	27.4%	82	0%	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_XRN_N
XRN2	22803	genome.wustl.edu	37	20	21336797	21336797	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012255.3	+1	reviewed	p.Y700	0.999	166	0%	152	30.9%	87	0%	-	-	-	NULL
CD93	22918	genome.wustl.edu	37	20	23064609	23064609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012072.3	-1	reviewed	p.P646L	0.860	50	4%	29	24.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CST9L	128821	genome.wustl.edu	37	20	23548872	23548872	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080610.2	-1	reviewed	p.H72	0.011	102	0%	57	31.6%	0	-	-	-	-	HMMPfam_Cystatin,superfamily_Cystatin/monellin
CST1	1469	genome.wustl.edu	37	20	23731314	23731314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001898.2	-1	reviewed	p.Y64H	0.002	76	0%	56	17.9%	24	0%	benign(0.01)	tolerated(0.55)	neutral(0.007)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
CST1	1469	genome.wustl.edu	37	20	23731368	23731368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001898.2	-1	reviewed	p.R46C	0.007	90	0%	54	20.4%	33	0%	benign(0.06)	tolerated(0.1)	neutral(0.290)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
ABHD12	26090	genome.wustl.edu	37	20	25282868	25282868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015600.3	-1	validated	p.P382S	0.982	27	0%	40	32.5%	193	0%	benign(0.075)	deleterious(0.01)	neutral(0.411)	NULL
ZNF337	26152	genome.wustl.edu	37	20	25657254	25657254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015655.2	-1	validated	p.L224F	0.000	278	0%	269	26.4%	12	0%	probably_damaging(0.989)	tolerated(0.46)	neutral(0.452)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF337	26152	genome.wustl.edu	37	20	25657522	25657522	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015655.2	-1	validated	p.S134	0.023	373	0%	357	15.7%	11	0%	-	-	-	NULL
PLAGL2	5326	genome.wustl.edu	37	20	30785286	30785286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002657.3	-1	reviewed	p.G154S	1.000	21	0%	49	30.6%	6	0%	probably_damaging(0.972)	deleterious(0.05)	deleterious(0.759)	superfamily_C2H2 and C2HC zinc fingers
KIF3B	9371	genome.wustl.edu	37	20	30898973	30898973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004798.2	+1	reviewed	p.A465T	0.996	52	0%	82	28%	30	0%	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31024593	31024593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015338.5	+1	reviewed	p.P1360S	1.000	71	0%	77	10.4%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31024986	31024986	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015338.5	+1	reviewed	p.Q1491*	1.000	73	0%	78	30.8%	32	0%	-	-	-	NULL
C20orf112	140688	genome.wustl.edu	37	20	31044141	31044141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080616.3	-1	validated	p.T56M	0.999	15	0%	15	40%	4	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31385093	31385093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006892.3	+1	reviewed	p.T493M	0.959	42	0%	54	46.3%	23	0%	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	superfamily_FYVE/PHD zinc finger
BPIFB3	359710	genome.wustl.edu	37	20	31647808	31647808	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182658.1	+1	provisional	p.T166	0.965	76	0%	91	33%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB4	149954	genome.wustl.edu	37	20	31671497	31671497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182519.2	+1	validated	p.A165V	0.913	65	0%	50	20%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
BPIFB1	92747	genome.wustl.edu	37	20	31889039	31889039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033197.2	+1	reviewed	p.A250T	1.000	266	0%	219	34.7%	0	-	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
ZNF341	84905	genome.wustl.edu	37	20	32345050	32345050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032819.3	+1	validated	p.A280T	0.451	89	0%	80	13.8%	3	0%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ITCH	83737	genome.wustl.edu	37	20	33067578	33067578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031483.4	+1	reviewed	p.G601V	1.000	97	0%	123	32.5%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
PIGU	128869	genome.wustl.edu	37	20	33173279	33173279	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080476.4	-1	reviewed	p.N296	1.000	160	0%	164	36.6%	63	0%	-	-	-	HMMPfam_PIG-U
GSS	2937	genome.wustl.edu	37	20	33529598	33529598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000178.2	-1	reviewed	p.A176T	1.000	104	0%	116	31%	62	0%	benign(0.047)	tolerated(0.32)	neutral(0.027)	HMMPfam_GSH_synth_ATP,superfamily_SSF56059
MYH7B	57644	genome.wustl.edu	37	20	33570326	33570326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020884.3	+1	reviewed	p.A240T	1.000	17	0%	36	47.2%	1	0%	benign(0.01)	deleterious(0)	neutral(0.445)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
EDEM2	55741	genome.wustl.edu	37	20	33719520	33719520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018217.2	-1	validated	p.V257M	1.000	92	0%	140	32.9%	35	0%	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases
CEP250	11190	genome.wustl.edu	37	20	34067227	34067227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007186.3	+1	reviewed	p.A756T	0.000	72	0%	98	17.3%	17	0%	benign(0)	tolerated(1)	-	NULL
CEP250	11190	genome.wustl.edu	37	20	34091721	34091721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007186.3	+1	reviewed	p.A1842T	0.000	40	2.5%	49	30.6%	52	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
RBM12	10137	genome.wustl.edu	37	20	34241483	34241483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006047.4	-1	reviewed	p.A588T	1.000	296	0.3%	405	26.2%	131	0%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NFS1	9054	genome.wustl.edu	37	20	34262327	34262327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021100.3	-1	reviewed	p.V361M	1.000	128	0%	164	23.8%	26	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
RBM39	9584	genome.wustl.edu	37	20	34292630	34292630	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000448303	-1	known	p.Y335H	0.939	242	0%	255	30.6%	208	0%	-	-	-	superfamily_RNA-binding domain RBD
PHF20	51230	genome.wustl.edu	37	20	34501958	34501958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016436.4	+1	validated	p.C555Y	1.000	102	0%	129	28.7%	25	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
DLGAP4	22839	genome.wustl.edu	37	20	35060765	35060765	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014902.4	+1	reviewed	p.A215	0.003	27	0%	28	28.6%	0	-	-	-	-	NULL
TGIF2	60436	genome.wustl.edu	37	20	35219464	35219464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021809.5	+1	reviewed	p.A115V	0.989	71	0%	119	12.6%	46	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
SAMHD1	25939	genome.wustl.edu	37	20	35533797	35533797	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015474.3	-1	reviewed	p.T460	0.990	220	0%	367	37.9%	37	0%	-	-	-	NULL
GHRH	2691	genome.wustl.edu	37	20	35882733	35882733	+	Splice_Site	SNP	C	C	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021081.4	-1	reviewed	e3-1	0.983	182	0%	204	34.8%	0	-	-	-	-	-
CTNNBL1	56259	genome.wustl.edu	37	20	36407691	36407691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030877.3	+1	reviewed	p.R329C	1.000	244	0%	178	34.3%	74	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
RPRD1B	58490	genome.wustl.edu	37	20	36694578	36694578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021215.3	+1	validated	p.R251C	1.000	207	0%	185	41.1%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TGM2	7052	genome.wustl.edu	37	20	36767992	36767992	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004613.2	-1	reviewed	p.Y388	0.970	75	0%	74	43.2%	44	0%	-	-	-	superfamily_Cysteine proteinases
KIAA1755	85449	genome.wustl.edu	37	20	36841547	36841547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029864.1	-1	predicted	p.S1167N	0.000	41	0%	33	30.3%	2	0%	benign(0.318)	deleterious(0)	deleterious(0.544)	NULL
DHX35	60625	genome.wustl.edu	37	20	37632447	37632447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021931.2	+1	reviewed	p.R303H	0.997	180	0%	221	32.6%	10	0%	possibly_damaging(0.937)	tolerated(0.1)	deleterious(0.669)	HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX35	60625	genome.wustl.edu	37	20	37662862	37662862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021931.2	+1	reviewed	p.E657K	1.000	124	0.8%	120	35.8%	18	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_DUF1605
DHX35	60625	genome.wustl.edu	37	20	37667167	37667167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021931.2	+1	reviewed	p.A698V	1.000	24	0%	30	26.7%	15	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
CHD6	84181	genome.wustl.edu	37	20	40050653	40050653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032221.3	-1	reviewed	p.R1541H	1.000	74	1.4%	71	23.9%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHD6	84181	genome.wustl.edu	37	20	40081484	40081484	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032221.3	-1	reviewed	p.S1073	0.972	168	0%	181	29.3%	4	0%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40085916	40085916	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032221.3	-1	reviewed	p.G939	0.992	76	0%	60	35%	17	0%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40086042	40086042	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032221.3	-1	reviewed	p.G897	0.996	44	0%	48	41.7%	13	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD6	84181	genome.wustl.edu	37	20	40112060	40112060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032221.3	-1	reviewed	p.V786A	1.000	125	0%	132	28.8%	8	0%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPRT	11122	genome.wustl.edu	37	20	40743859	40743859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133170.3	-1	reviewed	p.R1046C	1.000	66	1.5%	59	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRT	11122	genome.wustl.edu	37	20	41306639	41306639	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133170.3	-1	reviewed	p.V340	0.129	148	0%	100	32%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRT	11122	genome.wustl.edu	37	20	41408896	41408896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133170.3	-1	reviewed	p.I177T	1.000	182	0%	233	30.9%	0	-	possibly_damaging(0.759)	deleterious(0)	deleterious(0.726)	HMMPfam_MAM,HMMSmart_SM00137
HNF4A	3172	genome.wustl.edu	37	20	43036102	43036102	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000457.3	+1	reviewed	p.G124	1.000	25	0%	32	37.5%	0	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HNF4A	3172	genome.wustl.edu	37	20	43042409	43042409	+	Missense_Mutation	SNP	C	C	T	rs147342965	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000457.3	+1	reviewed	p.A154V	1.000	47	0%	41	22%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_Nuclear receptor ligand-binding domain
HNF4A	3172	genome.wustl.edu	37	20	43057070	43057070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000457.3	+1	reviewed	p.P409S	1.000	46	0%	73	23.3%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
PABPC1L	80336	genome.wustl.edu	37	20	43541403	43541403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001124756.1	+1	provisional	p.G99D	1.000	91	0%	109	29.4%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54928
PI3	5266	genome.wustl.edu	37	20	43804561	43804561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002638.3	+1	reviewed	p.V47I	0.000	186	0%	188	15.4%	0	-	benign(0.287)	tolerated(0.11)	neutral(0.360)	PatternScan_SVP_I,HMMPfam_Cementoin
DBNDD2	55861	genome.wustl.edu	37	20	44037485	44037485	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001048221.1	+1	validated	p.L62	0.998	64	0%	115	24.3%	33	0%	-	-	-	HMMPfam_Dysbindin
WFDC10A	140832	genome.wustl.edu	37	20	44258456	44258456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080753.2	+1	reviewed	p.A2T	0.001	50	0%	40	40%	0	-	benign(0.286)	deleterious(0)	deleterious(0.532)	NULL
UBE2C	11065	genome.wustl.edu	37	20	44444209	44444209	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007019.2	+1	reviewed	p.S82	0.853	97	0%	131	26.7%	491	0%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
ZSWIM3	140831	genome.wustl.edu	37	20	44506623	44506623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080752.2	+1	validated	p.A476T	0.000	56	0%	60	38.3%	5	0%	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
PLTP	5360	genome.wustl.edu	37	20	44530910	44530910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006227.2	-1	reviewed	p.R391C	0.996	30	0%	51	29.4%	238	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
PCIF1	63935	genome.wustl.edu	37	20	44574850	44574850	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022104.3	+1	validated	p.G480	0.677	30	0%	47	17%	64	0%	-	-	-	NULL
ZNF335	63925	genome.wustl.edu	37	20	44596157	44596157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022095.3	-1	reviewed	p.A311T	1.000	44	0%	32	12.5%	6	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MMP9	4318	genome.wustl.edu	37	20	44639805	44639805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004994.2	+1	reviewed	p.A225T	1.000	194	0%	214	34.1%	29	0%	possibly_damaging(0.851)	deleterious(0)	deleterious(0.772)	"HMMSmart_SM00059,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC2A10	81031	genome.wustl.edu	37	20	45354636	45354636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030777.3	+1	reviewed	p.V321M	0.000	79	1.3%	80	13.8%	5	0%	possibly_damaging(0.524)	tolerated(0.1)	neutral(0.463)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A10	81031	genome.wustl.edu	37	20	45354879	45354879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030777.3	+1	reviewed	p.A402T	0.000	63	0%	55	41.8%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
PREX1	57580	genome.wustl.edu	37	20	47324884	47324884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020820.3	-1	reviewed	p.V233I	1.000	160	0%	138	28.3%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
PREX1	57580	genome.wustl.edu	37	20	47364404	47364404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020820.3	-1	reviewed	p.R78H	1.000	43	0%	40	37.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARFGEF2	10564	genome.wustl.edu	37	20	47570297	47570297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006420.2	+1	reviewed	p.A270T	0.000	106	0%	119	31.9%	10	0%	benign(0)	tolerated(0.75)	neutral(0.002)	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47605845	47605845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006420.2	+1	reviewed	p.R853W	0.993	88	0%	89	29.2%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM-type_fold
CSE1L	1434	genome.wustl.edu	37	20	47704595	47704595	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001316.2	+1	reviewed	p.I591	1.000	100	0%	101	33.7%	118	0%	-	-	-	HMMPfam_CAS_CSE1,superfamily_ARM repeat
CSE1L	1434	genome.wustl.edu	37	20	47704627	47704627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001316.2	+1	reviewed	p.L602P	1.000	79	0%	90	30%	104	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAS_CSE1,superfamily_ARM repeat
DDX27	55661	genome.wustl.edu	37	20	47846806	47846806	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017895.7	+1	reviewed	p.G348	0.971	50	0%	59	27.1%	51	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX27	55661	genome.wustl.edu	37	20	47858655	47858655	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017895.7	+1	reviewed	p.A707	0.968	105	0%	125	36.8%	105	0%	-	-	-	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47869364	47869364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021035.2	-1	validated	p.R1037C	1.000	100	0%	103	27.2%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPN1	5770	genome.wustl.edu	37	20	49197888	49197888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002827.2	+1	reviewed	p.P392L	0.026	33	0%	38	36.8%	38	0%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
ADNP	23394	genome.wustl.edu	37	20	49510578	49510578	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015339.2	-1	reviewed	p.R225*	1.000	103	0%	162	43.8%	49	0%	-	-	-	HMMSmart_ZnF_C2H2
NFATC2	4773	genome.wustl.edu	37	20	50133422	50133422	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173091.2	-1	reviewed	p.R411	0.994	27	0%	61	11.5%	2	0%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_RHD
NFATC2	4773	genome.wustl.edu	37	20	50140311	50140311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173091.2	-1	reviewed	p.G157S	1.000	18	0%	33	30.3%	0	-	probably_damaging(1)	tolerated(0.85)	deleterious(0.500)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50329565	50329565	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006045.1	-1	validated	p.R126*	1.000	29	0%	23	21.7%	13	0%	-	-	-	HMMPfam_E1-E2_ATPase
SALL4	57167	genome.wustl.edu	37	20	50405426	50405426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020436.3	-1	reviewed	p.A906T	1.000	53	0%	103	31.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SALL4	57167	genome.wustl.edu	37	20	50405645	50405645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020436.3	-1	reviewed	p.P833S	0.999	23	0%	58	36.2%	0	-	benign(0.123)	tolerated(0.3)	neutral(0.038)	NULL
SALL4	57167	genome.wustl.edu	37	20	50407773	50407773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020436.3	-1	reviewed	p.H417Y	1.000	55	0%	80	42.5%	1	0%	possibly_damaging(0.849)	deleterious(0.01)	deleterious(0.732)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SALL4	57167	genome.wustl.edu	37	20	50407967	50407967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020436.3	-1	reviewed	p.A352V	0.182	36	0%	53	11.3%	0	-	possibly_damaging(0.521)	deleterious(0.01)	deleterious(0.581)	NULL
SALL4	57167	genome.wustl.edu	37	20	50408073	50408073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020436.3	-1	reviewed	p.P317S	0.999	26	0%	44	40.9%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
ZFP64	55734	genome.wustl.edu	37	20	50701774	50701774	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199427.2	-1	validated	p.S420	1.000	34	0%	32	21.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP64	55734	genome.wustl.edu	37	20	50705111	50705111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_199427.2	-1	validated	p.R350W	1.000	45	0%	70	35.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288393	100288393	genome.wustl.edu	37	20	50769846	50769846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343724.1	+1	model	p.A100S	1.000	124	0%	98	33.7%	22	0%	-	-	-	NULL
LOC100288393	100288393	genome.wustl.edu	37	20	50769963	50769963	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343724.1	+1	model	e1+1	0.993	78	0%	59	35.6%	12	0%	-	-	-	-
CSTF1	1477	genome.wustl.edu	37	20	54974178	54974178	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001033521.1	+1	reviewed	p.S267	0.002	130	0%	191	34%	51	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BMP7	655	genome.wustl.edu	37	20	55748336	55748336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001719.2	-1	reviewed	p.A356T	1.000	43	0%	41	26.8%	167	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines
RAE1	8480	genome.wustl.edu	37	20	55941915	55941915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001015885.1	+1	reviewed	p.C143Y	1.000	92	0%	145	28.3%	87	0%	benign(0.069)	deleterious(0.01)	neutral(0.410)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CTCFL	140690	genome.wustl.edu	37	20	56078492	56078492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080618.2	-1	reviewed	p.E614K	0.195	252	0%	255	13.7%	0	-	possibly_damaging(0.677)	deleterious(0.01)	deleterious(0.647)	NULL
PCK1	5105	genome.wustl.edu	37	20	56136630	56136630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002591.3	+1	reviewed	p.R55W	0.761	67	0%	49	36.7%	0	-	possibly_damaging(0.537)	deleterious(0)	deleterious(0.626)	HMMPfam_PEPCK,superfamily_PEP_carboxykinase_N
STX16	8675	genome.wustl.edu	37	20	57244440	57244440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001433.1	+1	reviewed	p.A163T	1.000	16	0%	28	32.1%	17	0%	benign(0.016)	tolerated(1)	neutral(0.001)	HMMPfam_Syntaxin,superfamily_t-snare proteins
GNAS	2778	genome.wustl.edu	37	20	57484814	57484814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080425.2	+1	reviewed	p.R908H	1.000	84	0%	107	32.7%	2881	0.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNAS	2778	genome.wustl.edu	37	20	57485795	57485795	+	Missense_Mutation	SNP	G	G	A	rs137854537		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080425.2	+1	reviewed	p.A1009T	1.000	46	0%	62	21%	3911	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBB1	81027	genome.wustl.edu	37	20	57599408	57599408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_030773.2	+1	validated	p.R309H	1.000	48	0%	81	24.7%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
EDN3	1908	genome.wustl.edu	37	20	57896167	57896167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000114.2	+1	reviewed	p.R154Q	0.000	105	0%	97	30.9%	0	-	benign(0.015)	tolerated(0.22)	neutral(0.043)	NULL
CDH26	60437	genome.wustl.edu	37	20	58560184	58560184	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177980.2	+1	reviewed	p.N279	0.000	22	0%	25	32%	0	-	-	-	-	superfamily_Cadherin
CDH26	60437	genome.wustl.edu	37	20	58562546	58562546	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_177980.2	+1	reviewed	p.G292	0.000	78	0%	85	34.1%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
CABLES2	81928	genome.wustl.edu	37	20	60966137	60966137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031215.2	-1	validated	p.R443C	0.883	21	0%	37	29.7%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
SLC17A9	63910	genome.wustl.edu	37	20	61597911	61597911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022082.3	+1	validated	p.S366P	0.987	80	0%	67	25.4%	0	-	probably_damaging(0.98)	tolerated(0.14)	deleterious(0.673)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
C20orf195	79025	genome.wustl.edu	37	20	62187146	62187146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024059.2	+1	predicted	p.R44C	0.217	9	0.000	12	0.417	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
PCMTD2	55251	genome.wustl.edu	37	20	62891451	62891451	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018257.2	+1	validated	p.E45*	1.000	87	0%	190	10.5%	24	0%	-	-	-	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SAMSN1	64092	genome.wustl.edu	37	21	15884773	15884773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022136.3	-1	validated	p.S134N	1.000	452	0%	555	16.6%	7	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SH3-domain
NRIP1	8204	genome.wustl.edu	37	21	16340125	16340125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003489.3	-1	reviewed	p.S130I	1.000	188	0%	222	25.7%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRPL39	54148	genome.wustl.edu	37	21	26961195	26961195	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080794.3	-1	reviewed	e9-1	1.000	430	0%	488	11.5%	0	-	-	-	-	-
ADAMTS1	9510	genome.wustl.edu	37	21	28209980	28209980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006988.3	-1	reviewed	p.G941E	0.001	130	0%	170	11.2%	42	0%	benign(0.02)	tolerated(0.21)	neutral(0.045)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
ADAMTS1	9510	genome.wustl.edu	37	21	28214691	28214691	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000451462	-1	known	p.S130N	0.983	60	0%	45	37.8%	33	0%	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
LTN1	26046	genome.wustl.edu	37	21	30316797	30316797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015565.2	-1	validated	p.G1297D	0.488	130	0%	188	25.5%	10	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
RWDD2B	10069	genome.wustl.edu	37	21	30380775	30380775	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016940.2	-1	validated	p.R79*	0.998	70	0%	228	16.2%	39	0%	-	-	-	HMMPfam_RWD,HMMSmart_RWD,superfamily_UBQ-conjugat/RWD-like
BACH1	571	genome.wustl.edu	37	21	30698633	30698633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001186.2	+1	reviewed	p.R163M	0.047	277	0.4%	349	31.2%	11	0%	benign(0.156)	deleterious(0.02)	neutral(0.397)	NULL
GRIK1	2897	genome.wustl.edu	37	21	30949474	30949474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000830.3	-1	reviewed	p.S647L	1.000	102	0%	116	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIK1	2897	genome.wustl.edu	37	21	30971214	30971214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000830.3	-1	reviewed	p.T381I	1.000	276	0%	281	24.9%	0	-	probably_damaging(0.972)	tolerated(0.22)	neutral(0.456)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
KRTAP26-1	388818	genome.wustl.edu	37	21	31691923	31691923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_203405.1	-1	validated	p.R144H	0.037	250	0%	315	31.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PMG
KRTAP19-5	337972	genome.wustl.edu	37	21	31874332	31874332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181611.1	-1	provisional	p.G26D	0.998	343	0%	407	35.4%	0	-	unknown(0)	-	-	NULL
KRTAP8-1	337879	genome.wustl.edu	37	21	32185397	32185397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_175857.3	-1	validated	p.G48S	0.878	172	0%	187	26.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33043986	33043986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020706.2	-1	reviewed	p.R1057Q	1.000	270	0%	418	9.8%	107	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33044507	33044507	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020706.2	-1	reviewed	p.P883	0.041	64	0%	73	12.3%	50	0%	-	-	-	NULL
HUNK	30811	genome.wustl.edu	37	21	33297020	33297020	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014586.1	+1	validated	p.R168*	0.750	335	0%	343	31.5%	15	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C21orf63	59271	genome.wustl.edu	37	21	33825740	33825740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_058187.3	+1	validated	p.Y94C	0.135	80	0%	64	29.7%	2	0%	possibly_damaging(0.691)	tolerated(0.18)	neutral(0.303)	HMMPfam_Gal_Lectin
SYNJ1	8867	genome.wustl.edu	37	21	34029373	34029373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003895.3	-1	validated	p.T840M	0.999	94	0%	129	41.1%	4	0%	possibly_damaging(0.909)	deleterious(0.04)	deleterious(0.711)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SON	6651	genome.wustl.edu	37	21	34922545	34922545	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138927.1	+1	reviewed	p.A336	0.715	37	0%	72	20.8%	31	0%	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34927122	34927122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138927.1	+1	reviewed	p.R1862H	0.869	30	0%	63	19%	131	0%	unknown(0)	deleterious(0.01)	-	NULL
ITSN1	6453	genome.wustl.edu	37	21	35237482	35237482	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000381284	+1	known	p.R42W	0.003	29	0%	40	32.5%	1	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RUNX1	861	genome.wustl.edu	37	21	36206775	36206775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001754.4	-1	reviewed	p.T246M	1.000	93	0%	49	34.7%	8	0%	benign(0.264)	tolerated(0.09)	neutral(0.324)	NULL
RUNX1	861	genome.wustl.edu	37	21	36206818	36206818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001754.4	-1	reviewed	p.R232W	1.000	77	0%	56	30.4%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37572629	37572629	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005128.2	+1	validated	p.S107	1.000	60	0%	39	33.3%	6	0%	-	-	-	HMMPfam_Dopey_N
DOPEY2	9980	genome.wustl.edu	37	21	37617984	37617984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005128.2	+1	validated	p.D1236N	1.000	50	0%	50	22%	11	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37626180	37626180	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005128.2	+1	validated	p.R1744	1.000	77	0%	93	16.1%	2	0%	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37642318	37642318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005128.2	+1	validated	p.T1832I	1.000	203	0%	246	30.5%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC3	7267	genome.wustl.edu	37	21	38529138	38529138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001894.1	+1	validated	p.W974*	1.000	266	0%	342	29.5%	49	0%	-	-	-	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38536450	38536450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001894.1	+1	validated	p.E1090K	0.001	138	0%	144	29.9%	65	0%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38538117	38538117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001894.1	+1	validated	p.V1201I	0.015	251	0%	229	14%	72	0%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Spectrin,superfamily_SSF48452
DSCR3	10311	genome.wustl.edu	37	21	38610891	38610891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000309117	-1	known	p.S74N	1.000	188	0%	209	26.3%	14	0%	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_Vps26,superfamily_Ig_E-set
DYRK1A	1859	genome.wustl.edu	37	21	38850513	38850513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001396.3	+1	reviewed	p.R80W	1.000	338	0.3%	346	12.4%	33	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
BRWD1	54014	genome.wustl.edu	37	21	40568453	40568453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018963.3	-1	reviewed	p.T2181M	0.001	211	0%	270	28.1%	37	0%	possibly_damaging(0.756)	tolerated(0.17)	neutral(0.338)	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40568602	40568602	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018963.3	-1	reviewed	p.S2131	0.040	389	0%	375	27.5%	38	0%	-	-	-	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40568714	40568714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018963.3	-1	reviewed	p.R2094H	0.075	485	0%	494	29.8%	35	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40650734	40650734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018963.3	-1	reviewed	p.R313H	0.996	302	0.3%	337	12.5%	7	14.2%	possibly_damaging(0.868)	deleterious(0.05)	deleterious(0.682)	HMMSmart_SM00320,superfamily_WD40 repeat-like
HMGN1	3150	genome.wustl.edu	37	21	40715040	40715040	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004965.6	-1	reviewed	p.*101Q	1.000	58	0%	125	30.4%	1630	0%	-	-	-	NULL
B3GALT5	10317	genome.wustl.edu	37	21	41033356	41033356	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006057.1	+1	reviewed	p.R290	0.000	212	0%	193	15%	0	-	-	-	-	NULL
IGSF5	150084	genome.wustl.edu	37	21	41137526	41137526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080444.1	+1	provisional	p.Q55H	1.000	190	0%	206	30.1%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
DSCAM	1826	genome.wustl.edu	37	21	41457638	41457638	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001389.3	-1	validated	p.N1341	1.000	200	0%	221	32.6%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DSCAM	1826	genome.wustl.edu	37	21	41741161	41741161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001389.3	-1	validated	p.L174F	1.000	62	0%	71	36.6%	0	-	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	HMMSmart_SM00409,superfamily_Immunoglobulin
MX1	4599	genome.wustl.edu	37	21	42830545	42830545	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144925.1	+1	reviewed	p.L617	1.000	129	0%	125	24.8%	17	0%	-	-	-	HMMPfam_GED,HMMSmart_GED
RIPK4	54101	genome.wustl.edu	37	21	43161178	43161178	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020639.2	-1	reviewed	p.A725	0.031	28	0%	29	20.7%	38	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
RIPK4	54101	genome.wustl.edu	37	21	43161693	43161693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020639.2	-1	reviewed	p.R554C	1.000	16	0%	23	43.5%	39	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
RIPK4	54101	genome.wustl.edu	37	21	43169358	43169358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020639.2	-1	reviewed	p.A210V	1.000	36	0%	53	32.1%	30	0%	possibly_damaging(0.825)	deleterious(0)	deleterious(0.757)	superfamily_Kinase_like,HMMPfam_Pkinase
PRDM15	63977	genome.wustl.edu	37	21	43239980	43239980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022115.3	-1	validated	p.H1106Y	1.000	15	0%	11	63.6%	4	0%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ABCG1	9619	genome.wustl.edu	37	21	43645875	43645875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004915.3	+1	reviewed	p.T46M	0.946	33	0%	60	28.3%	5	0%	benign(0.18)	tolerated(0.06)	neutral(0.339)	NULL
ABCG1	9619	genome.wustl.edu	37	21	43716401	43716401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004915.3	+1	reviewed	p.A646T	1.000	101	0%	111	30.6%	13	0%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	NULL
UBASH3A	53347	genome.wustl.edu	37	21	43864670	43864670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018961.2	+1	validated	p.G589S	0.955	177	0%	178	28.7%	2	0%	benign(0.013)	tolerated(0.19)	neutral(0.050)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
RSPH1	89765	genome.wustl.edu	37	21	43897436	43897436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080860.2	-1	validated	p.T231M	0.000	34	0%	18	38.9%	5	0%	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
SLC37A1	54020	genome.wustl.edu	37	21	43954912	43954912	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018964.3	+1	reviewed	p.N81	0.381	37	0%	30	33.3%	23	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC37A1	54020	genome.wustl.edu	37	21	43983976	43983976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018964.3	+1	reviewed	p.G375D	1.000	40	0%	54	14.8%	53	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RRP1	8568	genome.wustl.edu	37	21	45220473	45220473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003683.5	+1	reviewed	p.R323C	0.990	30	0%	44	18.2%	52	0%	possibly_damaging(0.621)	tolerated(0.1)	deleterious(0.503)	NULL
TRPM2	7226	genome.wustl.edu	37	21	45837863	45837863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003307.3	+1	reviewed	p.R1067H	1.000	14	0%	28	21.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRTAP10-11	386678	genome.wustl.edu	37	21	46066942	46066942	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198692.2	+1	validated	p.C189	0.002	329	0.3%	298	33.9%	0	-	-	-	-	NULL
LOC100130599	100130599	genome.wustl.edu	37	21	46122576	46122576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343756.1	+1	model	p.V278I	0.006	94	0%	72	37.5%	0	-	-	-	-	HMMPfam_Keratin_B2
PTTG1IP	754	genome.wustl.edu	37	21	46271431	46271431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000445724	-1	known	p.G94R	0.000	50	0%	58	29.3%	203	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ADARB1	104	genome.wustl.edu	37	21	46595934	46595934	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015833.3	+1	validated	p.A106	0.687	197	0%	180	29.4%	3	0%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
ADARB1	104	genome.wustl.edu	37	21	46602517	46602517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015833.3	+1	validated	p.A366T	1.000	83	0%	102	31.4%	3	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMSmart_SM00552
POFUT2	23275	genome.wustl.edu	37	21	46687549	46687549	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_133635.4	-1	validated	p.D364	0.988	48	0%	78	35.9%	35	0%	-	-	-	HMMPfam_O-FucT
SLC19A1	6573	genome.wustl.edu	37	21	46945802	46945802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194255.1	-1	validated	p.T408A	0.989	10	0%	15	26.7%	24	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
COL6A1	1291	genome.wustl.edu	37	21	47423054	47423054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001848.2	+1	reviewed	p.T819A	1.000	9	0.000	19	0.368	229	0.8%	unknown(0)	tolerated(0.1)	-	NULL
COL6A2	1292	genome.wustl.edu	37	21	47545897	47545897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001849.3	+1	reviewed	p.T723I	1.000	18	0%	33	21.2%	234	0%	possibly_damaging(0.84)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
LSS	4047	genome.wustl.edu	37	21	47647568	47647568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001438.2	-1	reviewed	p.A73T	0.992	32	0%	30	20%	21	0%	probably_damaging(0.961)	tolerated(0.39)	neutral(0.420)	NULL
PCNT	5116	genome.wustl.edu	37	21	47746420	47746420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006031.5	+1	reviewed	p.A62T	0.002	26	0%	49	12.2%	10	0%	benign(0.15)	tolerated(0.07)	neutral(0.332)	NULL
PCNT	5116	genome.wustl.edu	37	21	47783791	47783791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006031.5	+1	reviewed	p.L851I	0.001	59	0%	66	40.9%	6	0%	possibly_damaging(0.84)	tolerated(0.47)	neutral(0.333)	NULL
PCNT	5116	genome.wustl.edu	37	21	47845881	47845881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006031.5	+1	reviewed	p.T2439M	0.003	36	0%	24	29.2%	13	0%	benign(0.258)	deleterious(0.02)	neutral(0.410)	NULL
PCNT	5116	genome.wustl.edu	37	21	47851449	47851449	+	Missense_Mutation	SNP	C	C	T	rs112087468		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006031.5	+1	reviewed	p.R2691W	0.001	27	0%	37	29.7%	23	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DIP2A	23181	genome.wustl.edu	37	21	47954583	47954583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015151.3	+1	reviewed	p.A542V	0.992	15	0%	16	31.2%	15	0%	benign(0.008)	deleterious(0.05)	neutral(0.345)	superfamily_Acetyl-CoA synthetase-like
LOC729057	729057	genome.wustl.edu	37	22	16123311	16123311	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_042044.2	+1	model	NULL	1.000	46	0%	79	12.7%	3	0%	-	-	-	-
OR11H1	81061	genome.wustl.edu	37	22	16449002	16449002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005239.1	-1	provisional	p.S268N	0.753	467	0%	944	8.8%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H1	81061	genome.wustl.edu	37	22	16449250	16449250	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005239.1	-1	provisional	p.G185	0.998	275	0%	618	22.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
IL17RA	23765	genome.wustl.edu	37	22	17581248	17581248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014339.4	+1	reviewed	p.R143C	0.724	74	0%	94	35.1%	16	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
MICAL3	57553	genome.wustl.edu	37	22	18383613	18383613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015241.2	-1	provisional	p.A281V	1.000	73	0%	124	33.1%	10	0%	benign(0.342)	tolerated(0.17)	neutral(0.167)	superfamily_FAD/NAD(P)-binding domain
USP18	11274	genome.wustl.edu	37	22	18652617	18652617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017414.3	+1	validated	p.A212T	0.674	10	0%	12	66.7%	15	0%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_UCH,superfamily_Cysteine proteinases
DGCR2	9993	genome.wustl.edu	37	22	19044610	19044610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005137.2	-1	reviewed	p.V231M	0.987	18	0%	11	36.4%	98	0%	possibly_damaging(0.939)	tolerated(0.18)	neutral(0.441)	HMMSmart_CLECT,superfamily_C-type_lectin_fold
HIRA	7290	genome.wustl.edu	37	22	19344540	19344540	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003325.3	-1	reviewed	p.L757	0.997	63	0%	25	36%	78	0%	-	-	-	NULL
C22orf39	128977	genome.wustl.edu	37	22	19431891	19431891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173793.4	-1	validated	p.R72Q	0.832	12	0%	42	16.7%	4	0%	benign(0.381)	tolerated(0.19)	neutral(0.171)	NULL
CDC45	8318	genome.wustl.edu	37	22	19502435	19502435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000444382	+1	known	p.R456C	0.000	39	0%	40	27.5%	0	-	-	-	-	HMMPfam_CDC45
SEPT5	5413	genome.wustl.edu	37	22	19707355	19707355	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002688.4	+1	reviewed	p.L60	0.991	8	0.000	8	0.625	21	0%	-	-	-	HMMPfam_Septin,superfamily_SSF52540
DGCR8	54487	genome.wustl.edu	37	22	20079041	20079041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022720.5	+1	validated	p.R464W	0.998	154	0%	381	31%	45	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF74	7625	genome.wustl.edu	37	22	20749677	20749677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003426.2	+1	validated	p.S30L	0.000	58	0%	89	33.7%	19	0%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ZNF74	7625	genome.wustl.edu	37	22	20759892	20759892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003426.2	+1	validated	p.R190H	0.002	6	0.000	12	0.500	25	0%	possibly_damaging(0.808)	tolerated(0.11)	deleterious(0.576)	NULL
CRKL	1399	genome.wustl.edu	37	22	21304088	21304088	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005207.3	+1	reviewed	p.T289	0.014	153	0%	274	30.3%	66	0%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
SLC7A4	6545	genome.wustl.edu	37	22	21384598	21384598	+	Missense_Mutation	SNP	C	C	T	rs148642327	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004173.2	-1	validated	p.R342H	0.999	18	5.6%	16	37.5%	0	-	possibly_damaging(0.563)	deleterious(0)	deleterious(0.637)	HMMPfam_AA_permease
HIC2	23119	genome.wustl.edu	37	22	21800884	21800884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015094.2	+1	validated	p.G567D	1.000	18	0%	30	36.7%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IGLV8-61	28774	genome.wustl.edu	37	22	22453466	22453466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390283	+1	known	p.R71H	0.000	135	0%	252	17.1%	6	0%	benign(0.233)	deleterious(0.05)	neutral(0.369)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV1-51	28820	genome.wustl.edu	37	22	22677043	22677043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390290	+1	known	p.T24M	1.000	149	0%	116	20.7%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set,superfamily_Immunoglobulin
IGLV5-48	28780	genome.wustl.edu	37	22	22707771	22707771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390293	+1	known	p.S120I	0.000	219	0%	192	29.7%	0	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMSmart_SM00409,HMMPfam_V-set
IGLV5-37	28783	genome.wustl.edu	37	22	22782236	22782236	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390300	+1	known	p.G78	0.016	173	0%	198	32.3%	1	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF280B	140883	genome.wustl.edu	37	22	22842260	22842260	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080764.2	-1	reviewed	p.K488	1.000	349	0%	538	11.5%	2	0%	-	-	-	NULL
IGLV2-33	28811	genome.wustl.edu	37	22	22930913	22930913	+	Silent	SNP	G	G	A	rs192453185	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390302	+1	known	p.S36	0.002	411	0%	494	31.6%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGLC7	28834	genome.wustl.edu	37	22	23264880	23264880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390331	+1	known	p.Q39*	0.000	60	0%	106	24.5%	3	0%	benign(0.324)	deleterious(0)	deleterious(0.546)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
ZNF70	7621	genome.wustl.edu	37	22	24086398	24086398	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021916.2	-1	provisional	p.C310	0.537	78	0%	208	37%	5	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC2A11	66035	genome.wustl.edu	37	22	24226095	24226095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000407566	+1	known	p.A91V	0.000	58	0%	51	13.7%	0	-	benign(0.114)	tolerated(0.56)	neutral(0.015)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24452734	24452734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012295.2	+1	reviewed	p.K391N	1.000	188	0%	259	36.3%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24459459	24459459	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012295.2	+1	reviewed	p.G578	1.000	162	0%	221	27.1%	21	0%	-	-	-	NULL
CABIN1	23523	genome.wustl.edu	37	22	24509539	24509539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012295.2	+1	reviewed	p.S1375N	1.000	80	0%	73	32.9%	64	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
PIWIL3	440822	genome.wustl.edu	37	22	25150014	25150014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008496.2	-1	validated	p.T315N	0.006	178	0%	213	27.2%	0	-	possibly_damaging(0.659)	tolerated(0.5)	neutral(0.243)	HMMPfam_PAZ,superfamily_SSF101690
SGSM1	129049	genome.wustl.edu	37	22	25251257	25251257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039948.2	+1	validated	p.P177S	1.000	22	0%	34	35.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RUN,HMMSmart_SM00593
TMEM211	255349	genome.wustl.edu	37	22	25331413	25331413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001663.1	-1	provisional	p.A93T	0.998	136	0%	235	35.7%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_L_HGMIC_fpl
CRYBB2	1415	genome.wustl.edu	37	22	25625420	25625420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000496.2	+1	reviewed	p.K108N	1.000	79	0%	99	21.2%	55	0%	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
MYO18B	84700	genome.wustl.edu	37	22	26273940	26273940	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032608.5	+1	reviewed	p.T1413	0.003	24	0%	17	41.2%	0	-	-	-	-	NULL
MYO18B	84700	genome.wustl.edu	37	22	26343779	26343779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032608.5	+1	reviewed	p.K1911N	0.999	41	0%	38	23.7%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26351276	26351276	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032608.5	+1	reviewed	p.D2034	0.996	36	0%	22	31.8%	0	-	-	-	-	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26706768	26706768	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021115.4	+1	validated	p.A549	0.815	154	0%	130	13.8%	0	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SEZ6L	23544	genome.wustl.edu	37	22	26707792	26707792	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021115.4	+1	validated	p.S580	0.362	352	0%	306	28.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
AP1B1	162	genome.wustl.edu	37	22	29754808	29754808	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001127.3	-1	reviewed	p.C144	0.954	33	0%	42	23.8%	53	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
GAL3ST1	9514	genome.wustl.edu	37	22	30951275	30951275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004861.1	-1	reviewed	p.A313T	1.000	11	0%	15	40%	1	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Gal-3-0_sulfotr
PES1	23481	genome.wustl.edu	37	22	30976678	30976678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014303.2	-1	reviewed	p.A308V	0.000	18	0%	12	41.7%	141	0%	unknown(0)	tolerated(0.23)	-	NULL
MORC2	22880	genome.wustl.edu	37	22	31338252	31338252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014941.1	-1	provisional	p.V83I	1.000	233	0%	276	34.1%	61	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_ATP_bd_ATPase
SFI1	9814	genome.wustl.edu	37	22	32000874	32000874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001007467.1	+1	validated	p.R666Q	0.000	11	0.000	6	0.667	15	0%	benign(0.056)	tolerated(0.51)	neutral(0.012)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32211098	32211098	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014662.2	+1	validated	p.D522	0.385	191	0%	252	36.1%	3	0%	-	-	-	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32239647	32239647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014662.2	+1	validated	p.A875T	1.000	201	0%	267	13.1%	4	0%	benign(0.002)	tolerated(0.43)	neutral(0.013)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32242829	32242829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014662.2	+1	validated	p.A1002T	0.001	98	0%	142	31.7%	9	0%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32270316	32270316	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000433147	+1	known	p.R583C	0.997	25	0%	23	26.1%	8	0%	-	-	-	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
SLC5A1	6523	genome.wustl.edu	37	22	32480452	32480452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000343.3	+1	reviewed	p.A231T	0.094	147	0%	228	40.4%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_SSF
C22orf28	51493	genome.wustl.edu	37	22	32808069	32808069	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014306.4	-1	validated	p.G25	1.000	75	0%	53	15.1%	53	0%	-	-	-	superfamily_Hypothetical protein PH1602
LARGE	9215	genome.wustl.edu	37	22	34000503	34000503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004737.4	-1	reviewed	p.A178V	1.000	106	0%	96	15.6%	22	0%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
LARGE	9215	genome.wustl.edu	37	22	34022242	34022242	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004737.4	-1	reviewed	p.S159	0.777	87	0%	106	14.2%	27	0%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
LARGE	9215	genome.wustl.edu	37	22	34046542	34046542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004737.4	-1	reviewed	p.E73D	1.000	78	0%	54	48.1%	29	0%	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	NULL
ISX	91464	genome.wustl.edu	37	22	35481616	35481616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008494.1	+1	validated	p.C223Y	0.000	221	0%	309	12.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TOM1	10043	genome.wustl.edu	37	22	35719099	35719099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001135732.1	+1	reviewed	p.L99M	1.000	27	0%	31	32.3%	70	0%	possibly_damaging(0.826)	tolerated(0.09)	deleterious(0.610)	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
RASD2	23551	genome.wustl.edu	37	22	35947940	35947940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014310.3	+1	reviewed	p.R221H	0.997	31	0%	31	32.3%	1	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
RBFOX2	23543	genome.wustl.edu	37	22	36205923	36205923	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001082578.1	-1	reviewed	p.G122	1.000	534	0%	611	31.6%	32	0%	-	-	-	NULL
FOXRED2	80020	genome.wustl.edu	37	22	36902126	36902126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001102371.1	-1	validated	p.S115L	1.000	22	0%	29	24.1%	37	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FAD/NAD(P)-binding domain
CYTH4	27128	genome.wustl.edu	37	22	37690740	37690740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013385.3	+1	reviewed	p.D48N	1.000	67	0%	65	23.1%	5	0%	benign(0.124)	tolerated(0.08)	neutral(0.310)	NULL
SOX10	6663	genome.wustl.edu	37	22	38369821	38369821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006941.3	-1	reviewed	p.A361V	0.910	20	0%	43	18.6%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
PLA2G6	8398	genome.wustl.edu	37	22	38536161	38536161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003560.2	-1	reviewed	p.A209T	0.186	33	0%	44	25%	5	0%	probably_damaging(0.965)	tolerated(0.6)	neutral(0.411)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
KCNJ4	3761	genome.wustl.edu	37	22	38824105	38824105	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004981.1	-1	reviewed	p.H11	1.000	24	0%	27	48.1%	0	-	-	-	-	superfamily_SSF81324
APOBEC3G	60489	genome.wustl.edu	37	22	39479866	39479866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021822.2	+1	reviewed	p.R238C	0.000	54	0%	39	12.8%	11	0%	benign(0.055)	deleterious(0)	neutral(0.448)	HMMPfam_APOBEC_N
PDGFB	5155	genome.wustl.edu	37	22	39621767	39621767	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002608.2	-1	reviewed	p.T229	0.992	33	0%	34	50%	12	0%	-	-	-	NULL
TAB1	10454	genome.wustl.edu	37	22	39824033	39824033	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006116.2	+1	reviewed	p.G384	0.937	36	0%	29	37.9%	36	0%	-	-	-	NULL
MGAT3	4248	genome.wustl.edu	37	22	39883698	39883698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098270.1	+1	reviewed	p.V116I	0.996	7	0.000	21	0.333	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
CACNA1I	8911	genome.wustl.edu	37	22	40066073	40066073	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021096.3	+1	reviewed	p.L1409	1.000	46	0%	143	39.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TNRC6B	23112	genome.wustl.edu	37	22	40662604	40662604	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000446273	+1	known	p.A533V	0.993	229	0%	216	34.3%	6	0%	-	-	-	NULL
ADSL	158	genome.wustl.edu	37	22	40755310	40755310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000026.2	+1	reviewed	p.R234K	1.000	198	0%	282	25.5%	143	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Lyase_1,superfamily_L-aspartase-like
ADSL	158	genome.wustl.edu	37	22	40757527	40757527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000026.2	+1	reviewed	p.R300C	1.000	96	0%	136	11.8%	228	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lyase_1,superfamily_L-aspartase-like
SGSM3	27352	genome.wustl.edu	37	22	40798178	40798178	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015705.4	+1	validated	p.Y42	0.513	32	0%	26	38.5%	69	0%	-	-	-	NULL
RBX1	9978	genome.wustl.edu	37	22	41360075	41360075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014248.2	+1	reviewed	p.A61V	1.000	70	0%	93	33.3%	414	0%	benign(0.001)	tolerated(0.11)	neutral(0.272)	superfamily_RING/U-box
ZC3H7B	23264	genome.wustl.edu	37	22	41735849	41735849	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017590.4	+1	reviewed	p.S282	0.811	45	0%	46	32.6%	44	0%	-	-	-	NULL
ZC3H7B	23264	genome.wustl.edu	37	22	41744076	41744076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017590.4	+1	reviewed	p.C557*	1.000	47	0%	49	28.6%	97	0%	-	-	-	NULL
TOB2	10766	genome.wustl.edu	37	22	41832990	41832990	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016272.3	-1	validated	p.C120	0.655	44	0%	61	34.4%	64	0%	-	-	-	NULL
PHF5A	84844	genome.wustl.edu	37	22	41863583	41863583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032758.3	-1	reviewed	p.R38C	1.000	62	0%	83	25.3%	124	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_PHF5
ACO2	50	genome.wustl.edu	37	22	41923391	41923391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098.2	+1	reviewed	p.A685T	1.000	45	0%	46	37%	245	0%	benign(0.017)	deleterious(0.02)	neutral(0.384)	HMMPfam_Aconitase_C,superfamily_Aconitase/3IPM_dehydase_swvl
POLR3H	171568	genome.wustl.edu	37	22	41940058	41940058	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001018050.2	-1	validated	p.W16*	1.000	15	0%	23	30.4%	38	0%	-	-	-	HMMPfam_RNA_pol_Rpb7_N,superfamily_N-terminal heterodimerisation domain of RBP4 (RpoE)
MEI1	150365	genome.wustl.edu	37	22	42099403	42099403	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152513.3	+1	validated	p.T81	0.029	14	0%	25	28%	0	-	-	-	-	NULL
NAGA	4668	genome.wustl.edu	37	22	42463769	42463769	+	Silent	SNP	G	G	A	rs182798205	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000262.2	-1	reviewed	p.Y108	0.602	70	0%	55	25.5%	55	0%	-	-	-	HMMPfam_Melibiase,superfamily_Glyco_hydro_cat
TCF20	6942	genome.wustl.edu	37	22	42609195	42609195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005650.1	-1	reviewed	p.R706H	1.000	426	0%	401	11.2%	18	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TCF20	6942	genome.wustl.edu	37	22	42610284	42610284	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005650.1	-1	reviewed	p.Q343L	1.000	244	0%	245	30.2%	10	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
EFCAB6	64800	genome.wustl.edu	37	22	43926791	43926791	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022785.2	-1	validated	p.Q1429	1.000	63	0%	102	9.8%	1	0%	-	-	-	superfamily_EF-hand
PNPLA3	80339	genome.wustl.edu	37	22	44342154	44342154	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025225.2	+1	reviewed	p.P446	0.000	206	0%	216	28.7%	0	-	-	-	-	NULL
KIAA1644	85352	genome.wustl.edu	37	22	44681390	44681390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000381176	-1	known	p.P173S	1.000	51	0%	103	26.2%	0	-	probably_damaging(0.961)	tolerated(0.21)	neutral(0.448)	NULL
LOC100287184	100287184	genome.wustl.edu	37	22	45593696	45593696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343764.1	+1	model	p.T101M	0.221	80	0%	64	35.9%	49	0%	-	-	-	NULL
LOC100289317	100289317	genome.wustl.edu	37	22	45718375	45718375	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343782.1	-1	model	p.C246	0.000	57	0%	60	25%	0	-	-	-	-	NULL
LOC100289317	100289317	genome.wustl.edu	37	22	45723725	45723725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343782.1	-1	model	p.A173T	0.997	56	0%	44	11.4%	9	0%	-	-	-	NULL
PPARA	5465	genome.wustl.edu	37	22	46611074	46611074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001928.2	+1	reviewed	p.T71	0.997	50	0%	60	18.3%	4	0%	-	-	-	NULL
PPARA	5465	genome.wustl.edu	37	22	46628131	46628131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001928.2	+1	reviewed	p.C385Y	1.000	91	0%	94	27.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
CELSR1	9620	genome.wustl.edu	37	22	46785282	46785282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014246.1	-1	reviewed	p.R2154C	1.000	6	0.000	11	0.364	8	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Concanavalin A-like lectins/glucanases
TBC1D22A	25771	genome.wustl.edu	37	22	47193393	47193393	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014346.1	+1	provisional	p.S171	0.050	88	0%	68	25%	19	0%	-	-	-	PatternScan_AA_TRNA_LIGASE_I
TUBGCP6	85378	genome.wustl.edu	37	22	50656650	50656650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000425018	-1	known	p.A388T	0.423	19	0%	27	22.2%	25	0%	benign(0.002)	tolerated(0.74)	neutral(0.002)	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50671786	50671786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020461.3	-1	reviewed	p.V359I	1.000	30	0%	39	35.9%	7	0%	possibly_damaging(0.772)	tolerated(0.11)	deleterious(0.558)	HMMPfam_Spc97_Spc98
PPP6R2	9701	genome.wustl.edu	37	22	50857842	50857842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014678.3	+1	validated	p.V266I	0.995	14	0.000	8	0.750	52	0%	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	HMMPfam_SAPS
SBF1	6305	genome.wustl.edu	37	22	50893741	50893741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002972.2	-1	validated	p.R1463H	1.000	6	0.000	19	0.316	78	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_(Phosphotyrosine protein) phosphatases II
SBF1	6305	genome.wustl.edu	37	22	50903063	50903063	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002972.2	-1	validated	p.T512	0.631	16	0%	23	43.5%	27	0%	-	-	-	NULL
SBF1	6305	genome.wustl.edu	37	22	50904607	50904607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002972.2	-1	validated	p.A290V	0.990	17	0%	22	36.4%	34	0%	benign(0.046)	deleterious(0)	neutral(0.447)	HMMPfam_DENN,HMMSmart_SM00799
CPT1B	1375	genome.wustl.edu	37	22	51011412	51011412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145135.1	-1	reviewed	p.A415V	1.000	14	0%	25	32%	16	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ENSG00000210112	0	genome.wustl.edu	37	MT	4412	4412	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000387377	+1	novel	NULL	NULL	19	0%	44	47.7%	7	0%	-	-	-	-
CSF2RA	1438	genome.wustl.edu	37	X	1413223	1413223	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006140.4	+1	reviewed	p.R217*	0.006	164	0%	134	28.4%	2	0%	-	-	-	superfamily_Fibronectin type III
CSF2RA	1438	genome.wustl.edu	37	X	1424583	1424583	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000381509	+1	known	p.P396	0.001	7	0.000	30	0.300	0	-	-	-	-	NULL
IL3RA	3563	genome.wustl.edu	37	X	1471268	1471268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002183.2	+1	reviewed	p.R162H	0.000	23	0%	53	34%	15	0%	benign(0.012)	tolerated(0.68)	neutral(0.003)	superfamily_FN_III-like
SLC25A6	293	genome.wustl.edu	37	X	1508593	1508593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001636.3	-1	reviewed	p.A47T	0.883	31	0%	44	27.3%	2576	0.3%	benign(0.005)	tolerated(0.34)	neutral(0.023)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
P2RY8	286530	genome.wustl.edu	37	X	1585035	1585035	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178129.4	-1	reviewed	p.Y139	0.611	11	0%	13	30.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
P2RY8	286530	genome.wustl.edu	37	X	1585310	1585310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178129.4	-1	reviewed	p.L48M	0.992	13	0%	10	60%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_SSF81321
P2RY8	286530	genome.wustl.edu	37	X	1585383	1585383	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178129.4	-1	reviewed	p.A23	0.287	13	0%	13	38.5%	0	-	-	-	-	superfamily_SSF81321
AKAP17A	8227	genome.wustl.edu	37	X	1719898	1719898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005088.2	+1	validated	p.P500L	0.002	7	0.000	11	0.364	19	0%	benign(0.366)	-	-	NULL
MXRA5	25878	genome.wustl.edu	37	X	3228138	3228138	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015419.3	-1	reviewed	p.S2702	0.166	47	0%	54	25.9%	13	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3238118	3238118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015419.3	-1	reviewed	p.D1870N	0.998	102	0%	125	37.6%	8	0%	possibly_damaging(0.917)	deleterious(0.04)	deleterious(0.717)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3248262	3248262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015419.3	-1	reviewed	p.S169N	0.032	61	0%	84	16.7%	3	0%	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00369,superfamily_L domain-like
PRKX	5613	genome.wustl.edu	37	X	3530337	3530337	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005044.4	-1	reviewed	p.D327	0.976	35	0%	28	50%	59	0%	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
LOC100128355	100128355	genome.wustl.edu	37	X	3635254	3635254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_002343797.1	+1	model	p.A90V	1.000	8	0.000	26	0.423	1	0%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
NLGN4X	57502	genome.wustl.edu	37	X	5821470	5821470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020742.2	-1	reviewed	p.R417W	0.926	55	0%	66	25.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
KAL1	3730	genome.wustl.edu	37	X	8507777	8507777	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000216.2	-1	reviewed	p.H459	0.985	163	0%	218	11.5%	0	-	-	-	-	HMMSmart_FN3
MID1	4281	genome.wustl.edu	37	X	10417511	10417511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000381.2	-1	reviewed	p.A634V	0.982	150	0%	165	24.8%	12	0%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_SPRY,HMMSmart_SM00449
MSL3	10943	genome.wustl.edu	37	X	11780338	11780338	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000487782	+1	known	p.G100R	0.995	113	0%	166	43.4%	45	0%	-	-	-	HMMPfam_MRG
FRMPD4	9758	genome.wustl.edu	37	X	12734759	12734759	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014728.3	+1	reviewed	p.A727	0.073	309	0%	369	31.7%	0	-	-	-	-	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12735766	12735766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014728.3	+1	reviewed	p.E941K	1.000	348	0%	290	36.2%	0	-	possibly_damaging(0.689)	deleterious(0)	deleterious(0.691)	NULL
TLR7	51284	genome.wustl.edu	37	X	12906098	12906098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016562.3	+1	reviewed	p.S824I	1.000	285	0%	323	31.9%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
TLR8	51311	genome.wustl.edu	37	X	12938454	12938454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138636.4	+1	reviewed	p.P432L	1.000	266	0%	310	35.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52047
EGFL6	25975	genome.wustl.edu	37	X	13612962	13612962	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015507.3	+1	reviewed	p.C65	0.997	97	0%	150	34%	10	0%	-	-	-	HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_EGF_2
EGFL6	25975	genome.wustl.edu	37	X	13636147	13636147	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015507.3	+1	reviewed	p.E359	0.015	292	0%	353	30%	25	4%	-	-	-	NULL
RAB9A	9367	genome.wustl.edu	37	X	13727053	13727053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004251.3	+1	provisional	p.T63M	1.000	355	0.3%	405	40.2%	81	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FANCB	2187	genome.wustl.edu	37	X	14877438	14877438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001018113.1	-1	reviewed	p.K324Q	0.091	136	0%	216	10.6%	5	0%	probably_damaging(0.983)	tolerated(0.56)	neutral(0.435)	NULL
MOSPD2	158747	genome.wustl.edu	37	X	14910868	14910868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152581.3	+1	validated	p.R35C	1.000	266	0%	318	13.5%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_CRAL/TRIO N-terminal domain
ASB11	140456	genome.wustl.edu	37	X	15315696	15315696	+	Silent	SNP	G	G	A	rs181045050	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080873.1	-1	reviewed	p.H123	0.002	128	0%	115	13.9%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CA5B	11238	genome.wustl.edu	37	X	15800678	15800678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007220.3	+1	reviewed	p.R282H	1.000	81	0%	86	29.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
GRPR	2925	genome.wustl.edu	37	X	16170394	16170394	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005314.2	+1	reviewed	p.R261	1.000	284	0%	281	26%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SYAP1	94056	genome.wustl.edu	37	X	16773165	16773165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032796.3	+1	validated	p.A225T	0.002	65	1.5%	112	35.7%	158	0%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
NHS	4810	genome.wustl.edu	37	X	17743539	17743539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198270.2	+1	reviewed	p.V417A	0.207	1417	0%	1706	29.3%	11	0%	benign(0)	tolerated(1)	-	NULL
BEND2	139105	genome.wustl.edu	37	X	18189290	18189290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153346.4	-1	validated	p.M672I	0.001	198	0%	323	12.7%	0	-	benign(0.03)	deleterious(0.03)	neutral(0.366)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18664196	18664196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037343.1	+1	reviewed	p.T928M	0.000	144	0%	132	36.4%	0	-	unknown(0)	-	-	NULL
ENSG00000250774	0	genome.wustl.edu	37	X	18918634	18918634	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000502927	+1	known	NULL	0.000	12	0%	28	42.9%	1	0%	-	-	-	-
PHKA2	5256	genome.wustl.edu	37	X	18944613	18944613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000292.2	-1	reviewed	p.V473I	1.000	265	0%	228	18.4%	19	0%	possibly_damaging(0.675)	tolerated(0.15)	deleterious(0.480)	HMMPfam_PHK_AB
PHKA2	5256	genome.wustl.edu	37	X	18947401	18947401	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000292.2	-1	reviewed	p.I423	0.405	11	0%	17	41.2%	17	0%	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
PHKA2	5256	genome.wustl.edu	37	X	18970641	18970641	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000292.2	-1	reviewed	p.R86*	1.000	133	0%	133	14.3%	12	0%	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
GPR64	10149	genome.wustl.edu	37	X	19021029	19021029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001079858.2	-1	validated	p.A722V	1.000	198	0%	299	34.8%	0	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
MAP3K15	389840	genome.wustl.edu	37	X	19390877	19390877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001671.3	-1	validated	p.G476D	0.741	49	0%	47	40.4%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19560285	19560285	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031892.2	-1	reviewed	p.P550	0.052	36	0%	40	35%	21	0%	-	-	-	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19613101	19613101	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031892.2	-1	reviewed	p.P341	0.418	318	0%	420	11.2%	25	0%	-	-	-	superfamily_SH3-domain
CXorf23	256643	genome.wustl.edu	37	X	19983404	19983404	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198279.3	-1	validated	p.P344	0.000	225	0%	376	28.7%	3	0%	-	-	-	NULL
EIF1AX	1964	genome.wustl.edu	37	X	20156719	20156719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001412.3	-1	reviewed	p.R13H	1.000	190	0%	267	30.7%	165	0%	unknown(0)	deleterious(0)	-	superfamily_Nucleic acid-binding proteins
CNKSR2	22866	genome.wustl.edu	37	X	21627197	21627197	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014927.3	+1	reviewed	p.C718	0.976	115	0%	109	18.3%	0	-	-	-	-	NULL
YY2	404281	genome.wustl.edu	37	X	21874875	21874875	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_206923.3	+1	reviewed	p.C91	0.010	82	0%	106	24.5%	3	0%	-	-	-	NULL
ZNF645	158506	genome.wustl.edu	37	X	22291373	22291373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152577.2	+1	provisional	p.G89R	0.002	380	0%	382	33.2%	0	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMSmart_RING,superfamily_SSF57850
ZNF645	158506	genome.wustl.edu	37	X	22291584	22291584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152577.2	+1	provisional	p.P159L	0.004	374	0%	431	36%	0	-	possibly_damaging(0.931)	tolerated(0.2)	neutral(0.426)	NULL
ENSG00000249566	0	genome.wustl.edu	37	X	23094324	23094324	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508288	-1	novel	NULL	0.994	170	0%	180	31.7%	158	0%	-	-	-	-
ENSG00000249566	0	genome.wustl.edu	37	X	23094915	23094915	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000508288	-1	novel	NULL	0.001	267	0%	269	10%	65	0%	-	-	-	-
PRDX4	10549	genome.wustl.edu	37	X	23685840	23685840	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006406.1	+1	reviewed	p.C51	1.000	31	0%	27	29.6%	234	0%	-	-	-	NULL
ZFX	7543	genome.wustl.edu	37	X	24228703	24228703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003410.3	+1	reviewed	p.S543N	1.000	425	0%	431	29.5%	17	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_C2H2 and C2HC zinc fingers
POLA1	5422	genome.wustl.edu	37	X	24734566	24734566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016937.3	+1	reviewed	p.A199T	0.107	35	0%	91	25.3%	7	0%	benign(0.004)	tolerated(0.58)	neutral(0.005)	NULL
MAGEB6	158809	genome.wustl.edu	37	X	26213143	26213143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173523.2	+1	reviewed	p.A394T	0.008	270	0%	289	31.8%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27998801	27998801	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001017930.1	-1	reviewed	p.D217	1.000	92	0%	93	39.8%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
IL1RAPL1	11141	genome.wustl.edu	37	X	29973722	29973722	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014271.3	+1	reviewed	p.R626*	1.000	54	0%	44	38.6%	0	-	-	-	-	NULL
MAGEB3	4114	genome.wustl.edu	37	X	30254667	30254667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002365.4	+1	reviewed	p.G209D	0.021	74	0%	81	27.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MAGE
MAGEB4	4115	genome.wustl.edu	37	X	30260722	30260722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002367.3	+1	reviewed	p.R157H	0.000	47	0%	37	21.6%	0	-	benign(0.28)	tolerated(0.73)	neutral(0.087)	HMMPfam_MAGE
MAGEB1	4112	genome.wustl.edu	37	X	30268653	30268653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002363.4	+1	reviewed	p.R15C	0.003	66	0%	45	28.9%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
NR0B1	190	genome.wustl.edu	37	X	30326346	30326346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000475.4	-1	reviewed	p.A379T	1.000	128	0%	105	25.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
CXorf21	80231	genome.wustl.edu	37	X	30578030	30578030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_025159.2	-1	validated	p.S148N	0.345	175	0%	184	28.3%	0	-	benign(0.141)	tolerated(0.39)	neutral(0.028)	NULL
TAB3	257397	genome.wustl.edu	37	X	30871017	30871017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152787.3	-1	reviewed	p.A530T	1.000	73	0%	100	37%	4	0%	possibly_damaging(0.723)	tolerated(0.48)	neutral(0.273)	NULL
DMD	1756	genome.wustl.edu	37	X	31514912	31514912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004006.2	-1	reviewed	p.V2847A	0.994	151	0%	130	33.8%	0	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32456458	32456458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004006.2	-1	reviewed	p.R1324H	1.000	122	0%	154	37.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32632439	32632439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004006.2	-1	reviewed	p.R488H	1.000	95	0%	140	24.3%	0	-	benign(0.012)	tolerated(0.31)	neutral(0.028)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32663150	32663150	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004006.2	-1	reviewed	p.D360	0.001	217	0%	281	26%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TMEM47	83604	genome.wustl.edu	37	X	34657466	34657466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031442.3	-1	reviewed	p.A89T	0.990	53	0%	57	42.1%	7	0%	possibly_damaging(0.471)	tolerated(0.1)	neutral(0.442)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962029	34962029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152631.2	+1	validated	p.R361W	0.001	177	0%	201	32.8%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
CXorf22	170063	genome.wustl.edu	37	X	35944225	35944225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152632.3	+1	validated	p.D114G	0.686	156	0%	168	29.8%	0	-	possibly_damaging(0.769)	tolerated(0.15)	deleterious(0.526)	NULL
CXorf59	286464	genome.wustl.edu	37	X	36091376	36091376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173695.2	+1	validated	p.A104V	0.001	252	0%	223	28.7%	0	-	possibly_damaging(0.513)	deleterious(0.03)	deleterious(0.537)	NULL
CXorf59	286464	genome.wustl.edu	37	X	36156140	36156140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173695.2	+1	validated	p.A371T	0.570	147	0%	133	24.1%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	superfamily_Calponin-homology
FAM47C	442444	genome.wustl.edu	37	X	37029424	37029424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013736.2	+1	validated	p.A981T	0.059	325	0%	348	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRPX	8406	genome.wustl.edu	37	X	38009057	38009057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006307.4	-1	validated	p.M434I	0.304	52	0%	67	13.4%	6	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
MID1IP1	58526	genome.wustl.edu	37	X	38664238	38664238	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098790.1	+1	validated	p.S13	1.000	56	0%	67	13.4%	59	0%	-	-	-	HMMPfam_Spot_14
MID1IP1	58526	genome.wustl.edu	37	X	38664653	38664653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001098790.1	+1	validated	p.R152C	1.000	64	0%	53	35.8%	54	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Spot_14
BCOR	54880	genome.wustl.edu	37	X	39937152	39937152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001123385.1	-1	reviewed	p.V11I	1.000	62	0%	82	20.7%	7	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MED14	9282	genome.wustl.edu	37	X	40534560	40534560	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004229.3	-1	reviewed	p.V978	0.998	137	0%	143	28%	38	0%	-	-	-	NULL
MED14	9282	genome.wustl.edu	37	X	40551965	40551965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004229.3	-1	reviewed	p.R614C	1.000	99	0%	126	24.6%	15	0%	benign(0.09)	deleterious(0.03)	neutral(0.371)	NULL
USP9X	8239	genome.wustl.edu	37	X	41010204	41010204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039590.2	+1	reviewed	p.D553Y	1.000	81	0%	56	37.5%	18	0%	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	NULL
USP9X	8239	genome.wustl.edu	37	X	41031207	41031207	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039590.2	+1	reviewed	p.P1048	1.000	408	0.7%	550	32.7%	23	0%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41055877	41055877	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039590.2	+1	reviewed	p.G1373	0.930	130	0%	180	30%	31	0%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41084336	41084337	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039590.2	+1	reviewed	p.L2337fs	1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
GPR34	2857	genome.wustl.edu	37	X	41555359	41555359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001097579.1	+1	validated	p.R158Q	0.857	215	0%	250	14.4%	0	-	possibly_damaging(0.947)	tolerated(0.07)	deleterious(0.710)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MAOA	4128	genome.wustl.edu	37	X	43587481	43587481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000240.2	+1	reviewed	p.V189M	1.000	257	0%	193	11.9%	9	0%	possibly_damaging(0.626)	tolerated(0.08)	deleterious(0.518)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
KDM6A	7403	genome.wustl.edu	37	X	44919318	44919318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021140.2	+1	reviewed	p.L416F	1.000	55	0%	55	34.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC9A7	84679	genome.wustl.edu	37	X	46472726	46472726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032591.1	-1	reviewed	p.D642N	0.984	41	0%	61	39.3%	2	0%	benign(0.269)	tolerated(0.41)	neutral(0.043)	NULL
UBA1	7317	genome.wustl.edu	37	X	47061878	47061878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003334.3	+1	reviewed	p.G344D	0.057	18	0%	27	48.1%	222	0%	benign(0.362)	deleterious(0.03)	deleterious(0.479)	superfamily_MoeB
UBA1	7317	genome.wustl.edu	37	X	47074236	47074236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003334.3	+1	reviewed	p.R1029C	1.000	40	0%	63	30.2%	766	0.1%	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_UBA_e1_C
CDK16	5127	genome.wustl.edu	37	X	47083885	47083885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033018.3	+1	reviewed	p.R108C	1.000	62	0%	96	38.5%	265	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDK16	5127	genome.wustl.edu	37	X	47083886	47083886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033018.3	+1	reviewed	p.R108H	1.000	61	0%	95	28.4%	263	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ZNF157	7712	genome.wustl.edu	37	X	47272353	47272353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003446.3	+1	reviewed	p.R294I	0.999	151	0%	213	29.1%	0	-	possibly_damaging(0.893)	deleterious(0.03)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARAF	369	genome.wustl.edu	37	X	47426522	47426522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001654.3	+1	reviewed	p.K289Q	1.000	24	0%	31	54.8%	33	3%	benign(0.256)	tolerated(0.27)	neutral(0.060)	NULL
TIMP1	7076	genome.wustl.edu	37	X	47444664	47444664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003254.2	+1	reviewed	p.A88T	0.051	18	0%	49	30.6%	379	0%	benign(0.018)	tolerated(0.14)	neutral(0.250)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
ZNF630	57232	genome.wustl.edu	37	X	47918095	47918095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037735.2	-1	validated	p.A579V	0.082	130	0%	157	27.4%	8	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47918468	47918468	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001037735.2	-1	validated	p.G455*	1.000	157	0%	164	34.8%	12	0%	-	-	-	superfamily_SSF57667
SSX5	6758	genome.wustl.edu	37	X	48049700	48049700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021015.3	-1	reviewed	p.T153M	0.002	394	0.3%	481	17%	0	-	benign(0.006)	tolerated(1)	-	NULL
SSX3	10214	genome.wustl.edu	37	X	48207021	48207021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021014.2	-1	reviewed	p.H162R	0.000	560	0%	743	30.7%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_SSXRD
SLC38A5	92745	genome.wustl.edu	37	X	48325416	48325416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033518.2	-1	validated	p.A60T	1.000	24	0%	54	40.7%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Aa_trans
TBC1D25	4943	genome.wustl.edu	37	X	48418449	48418449	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002536.2	+1	validated	p.R385*	1.000	28	0%	27	25.9%	14	0%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
HDAC6	10013	genome.wustl.edu	37	X	48676758	48676758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006044.2	+1	reviewed	p.R709H	0.990	10	0%	24	33.3%	22	0%	possibly_damaging(0.71)	tolerated(0.06)	deleterious(0.579)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
SLC35A2	7355	genome.wustl.edu	37	X	48762540	48762540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005660.1	-1	provisional	p.A216T	0.996	10	0%	12	66.7%	27	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Nuc_sug_transp
GRIPAP1	56850	genome.wustl.edu	37	X	48858636	48858636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020137.3	-1	reviewed	p.A2V	1.000	69	0%	60	10%	6	0%	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	NULL
MAGIX	79917	genome.wustl.edu	37	X	49021200	49021200	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024859.2	+1	validated	e4-1	0.728	121	0%	212	46.2%	1	0%	-	-	-	-
PRICKLE3	4007	genome.wustl.edu	37	X	49034397	49034397	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453382	-1	known	p.R313C	0.072	86	1.2%	168	35.7%	10	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SYP	6855	genome.wustl.edu	37	X	49054268	49054268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003179.2	-1	reviewed	p.G45S	1.000	21	0%	36	19.4%	0	-	possibly_damaging(0.518)	tolerated(0.13)	neutral(0.427)	HMMPfam_MARVEL
PPP1R3F	89801	genome.wustl.edu	37	X	49142933	49142933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033215.4	+1	reviewed	p.S594N	0.999	43	0%	46	28.3%	2	0%	possibly_damaging(0.767)	tolerated(0.05)	deleterious(0.630)	NULL
AKAP4	8852	genome.wustl.edu	37	X	49957417	49957417	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003886.2	-1	reviewed	p.C649	0.079	345	0%	398	33.9%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
SHROOM4	57477	genome.wustl.edu	37	X	50376842	50376842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020717.3	-1	reviewed	p.G744D	0.000	72	0%	108	32.4%	2	0%	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50377308	50377308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020717.3	-1	reviewed	p.A589T	1.000	67	0%	64	26.6%	2	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
CXorf67	340602	genome.wustl.edu	37	X	51150722	51150722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000342995	+1	known	p.A285V	0.000	10	0%	12	33.3%	0	-	benign(0.107)	tolerated(1)	neutral(0.009)	NULL
CXorf67	340602	genome.wustl.edu	37	X	51151143	51151143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000342995	+1	known	p.W425C	0.000	107	0%	90	12.2%	0	-	probably_damaging(0.995)	tolerated(0.24)	deleterious(0.495)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51640707	51640707	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001005333.1	+1	reviewed	p.C573	0.998	120	0%	102	28.4%	352	0%	-	-	-	HMMPfam_MAGE
GPR173	54328	genome.wustl.edu	37	X	53106384	53106384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018969.5	+1	reviewed	p.A194D	1.000	8	0.000	11	0.545	7	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KDM5C	8242	genome.wustl.edu	37	X	53222632	53222632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004187.3	-1	reviewed	p.R1435H	1.000	174	0%	145	28.3%	109	0%	benign(0.004)	tolerated(0.24)	neutral(0.037)	NULL
KDM5C	8242	genome.wustl.edu	37	X	53223485	53223485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004187.3	-1	reviewed	p.A1292T	1.000	71	0%	66	16.7%	37	0%	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	NULL
IQSEC2	23096	genome.wustl.edu	37	X	53280284	53280284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001111125.1	-1	validated	p.G492W	0.999	197	0%	168	33.3%	1	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
SMC1A	8243	genome.wustl.edu	37	X	53407603	53407603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006306.2	-1	reviewed	p.V1186I	1.000	76	0%	45	37.8%	127	0%	probably_damaging(0.965)	tolerated(0.11)	deleterious(0.678)	HMMPfam_SMC_N,superfamily_SSF52540
HUWE1	10075	genome.wustl.edu	37	X	53579313	53579313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_031407.4	-1	reviewed	p.P2947L	1.000	97	0%	100	29%	56	0%	probably_damaging(0.975)	tolerated(0.13)	deleterious(0.669)	NULL
FGD1	2245	genome.wustl.edu	37	X	54482158	54482158	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004463.2	-1	reviewed	p.S634	0.954	11	0%	20	45%	29	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
FGD1	2245	genome.wustl.edu	37	X	54497065	54497065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004463.2	-1	reviewed	p.A204T	0.547	30	0%	20	30%	20	0%	unknown(0)	deleterious(0.01)	-	NULL
GNL3L	54552	genome.wustl.edu	37	X	54574783	54574783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019067.5	+1	reviewed	p.T251I	1.000	48	2.1%	63	14.3%	16	0%	benign(0.296)	deleterious(0)	deleterious(0.536)	superfamily_SSF52540
TRO	7216	genome.wustl.edu	37	X	54950013	54950013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001039705.1	+1	reviewed	p.A350T	0.000	46	0%	44	18.2%	20	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
APEX2	27301	genome.wustl.edu	37	X	55028689	55028689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014481.2	+1	reviewed	p.A83S	1.000	42	0%	49	16.3%	39	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ALAS2	212	genome.wustl.edu	37	X	55041442	55041442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000032.4	-1	reviewed	p.A392V	1.000	24	0%	25	44%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_AA_TRANSFER_CLASS_2,HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ALAS2	212	genome.wustl.edu	37	X	55047636	55047636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000032.4	-1	reviewed	p.R163C	1.000	287	0%	373	19.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PLP-dependent transferases
MAGEH1	28986	genome.wustl.edu	37	X	55479122	55479122	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014061.3	+1	reviewed	p.S105	0.209	95	0%	90	14.4%	11	0%	-	-	-	HMMPfam_MAGE
KLF8	11279	genome.wustl.edu	37	X	56310907	56310907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007250.4	+1	reviewed	p.R354C	1.000	80	0%	72	13.9%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SPIN4	139886	genome.wustl.edu	37	X	62570361	62570361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012968.2	-1	validated	p.R113Q	0.375	192	0%	191	36.6%	23	0%	benign(0.058)	tolerated(0.13)	neutral(0.256)	NULL
ASB12	142689	genome.wustl.edu	37	X	63445193	63445193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_130388.2	-1	reviewed	p.A104D	1.000	107	0%	162	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MTMR8	55613	genome.wustl.edu	37	X	63551599	63551599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017677.3	-1	reviewed	p.P397L	1.000	173	0%	274	29.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ZC3H12B	340554	genome.wustl.edu	37	X	64709262	64709262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001010888.3	+1	reviewed	p.V183D	1.000	138	0%	170	16.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100129585	100129585	genome.wustl.edu	37	X	65176337	65176337	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001721365.2	-1	model	p.V20	1.000	331	0.3%	510	27.1%	21	0%	-	-	-	NULL
HEPH	9843	genome.wustl.edu	37	X	65392224	65392224	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138737.3	+1	reviewed	p.D68	0.594	169	0%	152	12.5%	1	0%	-	-	-	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65414980	65414980	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138737.3	+1	reviewed	p.V473	0.998	183	0%	189	25.4%	7	0%	-	-	-	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3
HEPH	9843	genome.wustl.edu	37	X	65478811	65478811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_138737.3	+1	reviewed	p.F1012S	1.000	82	0%	92	16.3%	15	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2
LOC100129144	100129144	genome.wustl.edu	37	X	66594039	66594039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001721427.1	+1	model	p.A36T	0.021	122	0%	99	12.1%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
EFNB1	1947	genome.wustl.edu	37	X	68059898	68059898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004429.4	+1	reviewed	p.R199W	0.541	65	0%	70	14.3%	25	0%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
PJA1	64219	genome.wustl.edu	37	X	68382239	68382239	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145119.3	-1	reviewed	p.D281	0.618	55	0%	99	32.3%	24	0%	-	-	-	NULL
PJA1	64219	genome.wustl.edu	37	X	68382310	68382310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_145119.3	-1	reviewed	p.P258A	0.995	62	0%	93	39.8%	25	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
AWAT2	158835	genome.wustl.edu	37	X	69263813	69263813	+	Missense_Mutation	SNP	C	C	T	rs180949354	by1000genomes	TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001002254.1	-1	reviewed	p.R77H	0.004	15	0%	17	35.3%	0	-	possibly_damaging(0.643)	tolerated(0.11)	deleterious(0.497)	HMMPfam_DAGAT
FOXO4	4303	genome.wustl.edu	37	X	70320735	70320735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005938.3	+1	reviewed	p.L219M	0.000	58	0%	50	18%	4	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70375069	70375069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018977.3	+1	reviewed	p.R175W	1.000	66	0%	80	35%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_COesterase,superfamily_SSF53474
NLGN3	54413	genome.wustl.edu	37	X	70389753	70389753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018977.3	+1	reviewed	p.R765C	1.000	18	0%	33	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GJB1	2705	genome.wustl.edu	37	X	70443831	70443831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000166.5	+1	reviewed	p.A92T	1.000	30	0%	44	13.6%	41	0%	possibly_damaging(0.543)	tolerated(0.19)	neutral(0.233)	HMMPfam_Connexin
GJB1	2705	genome.wustl.edu	37	X	70444121	70444121	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000166.5	+1	reviewed	p.T188	1.000	54	0%	50	20%	44	0%	-	-	-	HMMPfam_Connexin_CCC
ZMYM3	9203	genome.wustl.edu	37	X	70471436	70471436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005096.3	-1	reviewed	p.A228V	0.996	24	0%	22	31.8%	15	0%	benign(0.335)	tolerated(0.09)	neutral(0.402)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70472548	70472548	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005096.3	-1	reviewed	p.S186	1.000	58	0%	51	33.3%	16	0%	-	-	-	NULL
NONO	4841	genome.wustl.edu	37	X	70514205	70514205	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001145408.1	+1	reviewed	p.V159	1.000	80	0%	96	33.3%	670	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TAF1	6872	genome.wustl.edu	37	X	70598196	70598196	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004606.3	+1	reviewed	p.L369	1.000	254	0%	384	34.4%	6	0%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70613305	70613305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004606.3	+1	reviewed	p.R1089H	1.000	161	0%	197	11.7%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70617187	70617187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004606.3	+1	reviewed	p.R1184H	0.995	174	0%	187	39.6%	15	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
OGT	8473	genome.wustl.edu	37	X	70756039	70756039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181672.2	+1	reviewed	p.R17C	1.000	104	0%	134	28.4%	15	0%	possibly_damaging(0.598)	tolerated(0.14)	neutral(0.457)	NULL
OGT	8473	genome.wustl.edu	37	X	70784536	70784536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181672.2	+1	reviewed	p.A841V	1.000	109	0%	146	25.3%	31	0%	benign(0.188)	deleterious(0.02)	neutral(0.401)	NULL
OGT	8473	genome.wustl.edu	37	X	70784541	70784541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_181672.2	+1	reviewed	p.V843I	1.000	113	0%	156	29.5%	30	0%	possibly_damaging(0.57)	tolerated(0.57)	neutral(0.201)	NULL
RGAG4	340526	genome.wustl.edu	37	X	71351311	71351311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024455.3	-1	validated	p.G27E	1.000	32	0%	33	30.3%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIR374B	100126317	genome.wustl.edu	37	X	73438453	73438453	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000390738	-1	known	NULL	0.997	112	0%	147	31.3%	0	-	-	-	-	-
SLC16A2	6567	genome.wustl.edu	37	X	73740842	73740842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006517.3	+1	reviewed	p.A224T	0.999	149	0%	113	32.7%	1	0%	benign(0.021)	tolerated(0.17)	neutral(0.060)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
RLIM	51132	genome.wustl.edu	37	X	73812118	73812118	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016120.3	-1	reviewed	p.R344	0.923	102	0%	142	29.6%	25	0%	-	-	-	NULL
RLIM	51132	genome.wustl.edu	37	X	73812203	73812203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016120.3	-1	reviewed	p.P316H	1.000	98	0%	127	37.8%	27	0%	possibly_damaging(0.661)	tolerated(0.27)	neutral(0.267)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73960324	73960324	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001008537.2	-1	validated	p.S1356	0.994	295	0%	249	34.1%	0	-	-	-	-	NULL
ABCB7	22	genome.wustl.edu	37	X	74284992	74284992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004299.3	-1	reviewed	p.A583T	1.000	121	0%	154	33.1%	47	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,superfamily_SSF52540
ABCB7	22	genome.wustl.edu	37	X	74293780	74293780	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004299.3	-1	reviewed	p.C290	1.000	95	0%	110	24.5%	21	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
MAGEE1	57692	genome.wustl.edu	37	X	75649421	75649421	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020932.2	+1	reviewed	p.T366	0.381	41	0%	31	29%	0	-	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76938007	76938007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000489.3	-1	reviewed	p.A914V	0.000	515	0%	656	29.7%	11	0%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
PGAM4	441531	genome.wustl.edu	37	X	77225004	77225004	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001029891.2	-1	reviewed	p.A44	0.992	170	0%	201	16.4%	10	0%	-	-	-	HMMPfam_PGAM,superfamily_SSF53254
ATP7A	538	genome.wustl.edu	37	X	77284934	77284934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000052.4	+1	reviewed	p.A1035V	1.000	213	0%	317	38.8%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP7A	538	genome.wustl.edu	37	X	77298876	77298876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000052.4	+1	reviewed	p.R1356Q	1.000	273	0%	299	33.1%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
TAF9B	51616	genome.wustl.edu	37	X	77388876	77388876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015975.4	-1	reviewed	p.T184M	0.996	628	0%	465	10.5%	26	0%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
ZCCHC5	203430	genome.wustl.edu	37	X	77912825	77912825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_152694.2	-1	reviewed	p.L365F	0.000	103	0%	101	34.7%	0	-	possibly_damaging(0.695)	deleterious(0)	deleterious(0.694)	NULL
P2RY10	27334	genome.wustl.edu	37	X	78216772	78216772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014499.2	+1	reviewed	p.F252S	1.000	441	0%	448	11.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
P2RY10	27334	genome.wustl.edu	37	X	78216827	78216827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014499.2	+1	reviewed	p.K270N	0.987	679	0%	665	10.5%	0	-	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	HMMPfam_7tm_1,superfamily_SSF81321
ITM2A	9452	genome.wustl.edu	37	X	78622663	78622663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004867.4	-1	reviewed	p.A17V	0.971	26	0%	16	37.5%	5	0%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79932612	79932612	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153252.4	-1	reviewed	p.Y1635	0.971	643	0.2%	654	32%	2	0%	-	-	-	NULL
POU3F4	5456	genome.wustl.edu	37	X	82763669	82763669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000307.3	+1	reviewed	p.A113T	1.000	57	0%	38	28.9%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
HDX	139324	genome.wustl.edu	37	X	83723587	83723587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144657.4	-1	validated	p.A382S	0.998	116	0%	109	30.3%	6	0%	benign(0.004)	tolerated(0.07)	neutral(0.319)	NULL
CHM	1121	genome.wustl.edu	37	X	85282505	85282505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000390.2	-1	reviewed	p.H36Y	1.000	235	0%	188	34.6%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDI,superfamily_SSF51905
PCDH11X	27328	genome.wustl.edu	37	X	91090821	91090821	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032968.3	+1	reviewed	p.C106	1.000	275	0%	203	29.6%	0	-	-	-	-	HMMPfam_Cadherin_2
PCDH11X	27328	genome.wustl.edu	37	X	91873633	91873633	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032968.3	+1	reviewed	p.S1246	0.654	379	0%	340	36.5%	0	-	-	-	-	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92927487	92927487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004538.4	-1	reviewed	p.A273T	0.001	361	0%	321	32.4%	3	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_NAP
NAP1L3	4675	genome.wustl.edu	37	X	92927865	92927865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004538.4	-1	reviewed	p.R147W	0.614	155	0.6%	168	35.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NAP
SYTL4	94121	genome.wustl.edu	37	X	99943432	99943432	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001129896.2	-1	reviewed	p.E307	0.801	108	0.9%	132	35.6%	2	0%	-	-	-	NULL
SYTL4	94121	genome.wustl.edu	37	X	99956275	99956275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001129896.2	-1	reviewed	p.R126H	1.000	93	0%	155	32.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger
CSTF2	1478	genome.wustl.edu	37	X	100078932	100078932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001325.2	+1	reviewed	p.L168M	1.000	270	0%	263	33.8%	31	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSTF2	1478	genome.wustl.edu	37	X	100081723	100081723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001325.2	+1	reviewed	p.G268D	1.000	57	0%	57	38.6%	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRMT2B	79979	genome.wustl.edu	37	X	100278536	100278536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024917.5	-1	reviewed	p.R227C	0.997	165	0%	258	29.5%	31	0%	possibly_damaging(0.545)	deleterious(0)	deleterious(0.629)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CENPI	2491	genome.wustl.edu	37	X	100381742	100381742	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006733.2	+1	reviewed	p.F244	0.762	563	0%	759	10.4%	5	0%	-	-	-	HMMPfam_Mis6
CENPI	2491	genome.wustl.edu	37	X	100387234	100387234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006733.2	+1	reviewed	p.G448D	0.998	277	0%	362	33.7%	4	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Mis6
DRP2	1821	genome.wustl.edu	37	X	100507599	100507599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001939.2	+1	reviewed	p.R624Q	1.000	125	0%	150	10.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
ARMCX1	51309	genome.wustl.edu	37	X	100808558	100808558	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016608.1	+1	reviewed	p.E215	0.972	733	0%	1037	14.3%	9	0%	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100911745	100911745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014782.5	-1	reviewed	p.A277V	0.911	334	0%	319	33.2%	32	0%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100912474	100912474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014782.5	-1	reviewed	p.T34I	0.398	90	0%	106	17%	30	0%	unknown(0)	tolerated(0.15)	-	NULL
BEX5	340542	genome.wustl.edu	37	X	101409009	101409009	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001012978.2	-1	validated	p.E77*	1.000	361	0%	629	11.8%	104	0%	-	-	-	HMMPfam_BEX
NXF2	56001	genome.wustl.edu	37	X	101572038	101572038	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017809.3	+1	reviewed	p.P54	0.000	826	0%	974	14.9%	0	-	-	-	-	NULL
ARMCX5	64860	genome.wustl.edu	37	X	101857885	101857885	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022838.3	+1	validated	p.G272	0.137	497	0%	551	33.2%	16	0%	-	-	-	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101971063	101971063	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004051.2	+1	reviewed	p.A422	0.479	161	0%	178	48.3%	3	0%	-	-	-	NULL
RAB40AL	282808	genome.wustl.edu	37	X	102192654	102192654	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001031834.1	+1	reviewed	p.V136	0.999	193	0%	171	28.1%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
NXF3	56000	genome.wustl.edu	37	X	102339674	102339674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022052.1	-1	reviewed	p.H56Y	0.000	167	0%	288	31.6%	0	-	benign(0.049)	tolerated(0.09)	neutral(0.299)	NULL
BEX4	56271	genome.wustl.edu	37	X	102471206	102471206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080425.2	+1	validated	p.E42G	0.046	102	0%	134	31.3%	95	0%	possibly_damaging(0.85)	deleterious(0.01)	deleterious(0.733)	HMMPfam_BEX
TCEAL1	9338	genome.wustl.edu	37	X	102885051	102885051	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001006639.1	+1	reviewed	p.P69	0.000	107	0%	99	31.3%	25	0%	-	-	-	HMMPfam_TFA
MORF4L2	9643	genome.wustl.edu	37	X	102931423	102931423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001142418.1	-1	validated	p.A178V	0.998	426	0.2%	435	18.2%	731	0.1%	probably_damaging(0.994)	tolerated(0.16)	deleterious(0.512)	HMMPfam_MRG
GLRA4	441509	genome.wustl.edu	37	X	102974045	102974045	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001024452.2	-1	validated	p.G291	1.000	229	0%	185	35.1%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
RAB9B	51209	genome.wustl.edu	37	X	103080169	103080169	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016370.2	-1	reviewed	p.C182	1.000	202	0%	283	22.3%	5	0%	-	-	-	NULL
NRK	203447	genome.wustl.edu	37	X	105153819	105153819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198465.2	+1	validated	p.R729H	0.043	10	0%	17	35.3%	0	-	benign(0)	deleterious(0)	neutral(0.445)	superfamily_p53-like transcription factors
NRK	203447	genome.wustl.edu	37	X	105197119	105197119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_198465.2	+1	validated	p.R1536H	1.000	70	0%	72	30.6%	0	-	possibly_damaging(0.802)	tolerated(1)	neutral(0.302)	HMMPfam_CNH,HMMSmart_SM00036
SERPINA7	6906	genome.wustl.edu	37	X	105279310	105279310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000354.5	-1	reviewed	p.T230I	0.362	296	0%	237	37.6%	0	-	benign(0.332)	deleterious(0.02)	deleterious(0.487)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CXorf57	55086	genome.wustl.edu	37	X	105855561	105855561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018015.5	+1	validated	p.R84H	0.003	194	0%	210	11.4%	0	-	probably_damaging(0.97)	tolerated(0.34)	neutral(0.435)	NULL
RNF128	79589	genome.wustl.edu	37	X	106016320	106016320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_194463.1	+1	reviewed	p.A221V	1.000	538	0%	621	32.9%	0	-	probably_damaging(0.995)	tolerated(0.67)	neutral(0.460)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106097482	106097482	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017752.2	+1	validated	p.L770	1.000	187	0%	184	23.9%	3	0%	-	-	-	NULL
MORC4	79710	genome.wustl.edu	37	X	106228350	106228350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024657.4	-1	reviewed	p.R217H	1.000	207	0%	188	25%	32	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ATP_bd_ATPase
MID2	11043	genome.wustl.edu	37	X	107084062	107084062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012216.3	+1	reviewed	p.R56H	1.000	280	0%	504	32.5%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
MID2	11043	genome.wustl.edu	37	X	107084385	107084385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012216.3	+1	reviewed	p.R164C	1.000	89	0%	150	29.3%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_SM00336
PSMD10	5716	genome.wustl.edu	37	X	107331304	107331304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002814.2	-1	reviewed	p.A80V	1.000	344	0%	337	40.1%	139	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
COL4A6	1288	genome.wustl.edu	37	X	107407852	107407852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001847.2	-1	reviewed	p.M1350I	0.988	220	0%	204	27%	0	-	benign(0.413)	tolerated(0.11)	neutral(0.405)	HMMPfam_Collagen
ENSG00000189372	0	genome.wustl.edu	37	X	107626851	107626851	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000453808	+1	known	p.N35	0.990	17	0%	26	34.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
COL4A5	1287	genome.wustl.edu	37	X	107865959	107865959	+	Missense_Mutation	SNP	G	G	T	rs104886196		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033380.1	+1	reviewed	p.G941C	1.000	187	0%	166	28.9%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL4A5	1287	genome.wustl.edu	37	X	107930792	107930792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_033380.1	+1	reviewed	p.H1466Y	1.000	348	0%	365	36.7%	13	0%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	superfamily_C-type_lectin_fold
IRS4	8471	genome.wustl.edu	37	X	107977546	107977546	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003604.2	-1	reviewed	p.E677*	0.063	308	0%	276	16.7%	0	-	-	-	-	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108636232	108636232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001522.2	-1	reviewed	p.R826Q	1.000	881	0%	1037	31%	0	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	superfamily_Protein kinase-like (PK-like)
NXT2	55916	genome.wustl.edu	37	X	108785737	108785737	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018698.3	+1	provisional	p.E138	1.000	203	0%	226	29.6%	14	0%	-	-	-	HMMPfam_NTF2,superfamily_SSF54427
ACSL4	2182	genome.wustl.edu	37	X	108911347	108911347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_022977.2	-1	reviewed	p.A474D	1.000	219	0%	351	16.8%	15	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
TMEM164	84187	genome.wustl.edu	37	X	109352370	109352370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032227.3	+1	validated	p.R168Q	1.000	294	0%	417	31.9%	10	0%	possibly_damaging(0.834)	tolerated(0.07)	deleterious(0.637)	NULL
AMMECR1	9949	genome.wustl.edu	37	X	109441812	109441812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015365.2	-1	reviewed	p.R313H	1.000	146	0%	144	26.4%	14	0%	benign(0.422)	deleterious(0)	deleterious(0.582)	NULL
CAPN6	827	genome.wustl.edu	37	X	110491966	110491966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014289.3	-1	reviewed	p.L439I	0.980	173	0%	249	25.7%	200	0%	benign(0.23)	tolerated(0.1)	neutral(0.309)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
DCX	1641	genome.wustl.edu	37	X	110653383	110653383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000555.2	-1	reviewed	p.A163T	1.000	395	0%	535	33.8%	0	-	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
TRPC5	7224	genome.wustl.edu	37	X	111025182	111025182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012471.2	-1	reviewed	p.R694H	0.423	325	0%	328	29%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
ZCCHC16	340595	genome.wustl.edu	37	X	111698158	111698158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004308.2	+1	validated	p.P68S	0.078	277	0%	322	37%	0	-	probably_damaging(0.996)	tolerated(0.59)	neutral(0.466)	NULL
LOC203510	203510	genome.wustl.edu	37	X	111933201	111933201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XM_001723892.1	+1	model	p.A20V	0.997	181	0%	293	32.1%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
AMOT	154796	genome.wustl.edu	37	X	112048284	112048284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001113490.1	-1	reviewed	p.A556V	0.947	364	0%	369	26.6%	5	0%	possibly_damaging(0.792)	tolerated(0.22)	neutral(0.339)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114357669	114357669	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_020871.3	-1	validated	p.R646*	1.000	80	0%	90	36.7%	1	0%	-	-	-	HMMPfam_CH,superfamily_Calponin-homology
LOC642357	642357	genome.wustl.edu	37	X	114938198	114938198	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	XR_016681.3	+1	model	NULL	1.000	46	0%	62	40.3%	4	0%	-	-	-	-
SLC6A14	11254	genome.wustl.edu	37	X	115569037	115569037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007231.3	+1	reviewed	p.S43L	0.790	311	0.3%	270	31.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_SNF
SLC6A14	11254	genome.wustl.edu	37	X	115588809	115588809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007231.3	+1	reviewed	p.R550I	0.021	556	0%	593	12%	1	0%	benign(0.01)	deleterious(0.03)	neutral(0.365)	HMMPfam_SNF
WDR44	54521	genome.wustl.edu	37	X	117480471	117480471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_019045.4	+1	reviewed	p.A2V	1.000	33	0%	27	14.8%	1	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
MIR1277	100302214	genome.wustl.edu	37	X	117520365	117520366	+	RNA	INS	-	-	AT	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000408536	+1	known	NULL	1.000:0.986	-	-	-	-	-	-	-	-	-	-
DOCK11	139818	genome.wustl.edu	37	X	117749566	117749566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144658.3	+1	validated	p.L1062M	0.912	134	0%	161	17.4%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117773495	117773495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144658.3	+1	validated	p.L1367I	1.000	159	0%	236	36%	6	0%	possibly_damaging(0.858)	tolerated(0.33)	neutral(0.355)	NULL
IL13RA1	3597	genome.wustl.edu	37	X	117925739	117925739	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001560.2	+1	reviewed	p.Y402	0.979	339	0%	326	26.1%	50	0%	-	-	-	NULL
ZCCHC12	170261	genome.wustl.edu	37	X	117959721	117959721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173798.2	+1	provisional	p.R172W	1.000	206	0%	360	25.3%	3	0%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
PGRMC1	10857	genome.wustl.edu	37	X	118370467	118370467	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_006667.3	+1	reviewed	p.R47	1.000	27	0%	27	29.6%	132	0%	-	-	-	NULL
SEPT6	23157	genome.wustl.edu	37	X	118771050	118771050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015129.5	-1	reviewed	p.R299H	1.000	194	0%	224	27.2%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Septin
SEPT6	23157	genome.wustl.edu	37	X	118797511	118797511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_015129.5	-1	reviewed	p.N92S	1.000	172	0%	208	30.3%	25	4%	benign(0.012)	deleterious(0.03)	neutral(0.365)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
UPF3B	65109	genome.wustl.edu	37	X	118968980	118968980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_080632.1	-1	reviewed	p.A438V	0.998	153	0%	167	37.7%	126	0%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
NKAP	79576	genome.wustl.edu	37	X	119066069	119066069	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024528.3	-1	reviewed	e6+1	1.000	252	0.4%	299	31.4%	0	-	-	-	-	-
NKAP	79576	genome.wustl.edu	37	X	119077441	119077441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024528.3	-1	reviewed	p.R43H	0.021	41	0%	26	19.2%	13	0%	unknown(0)	tolerated(0.06)	-	NULL
NKAP	79576	genome.wustl.edu	37	X	119077502	119077502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024528.3	-1	reviewed	p.S23R	0.863	48	0%	29	20.7%	13	0%	unknown(0)	tolerated(0.24)	-	NULL
RHOXF1	158800	genome.wustl.edu	37	X	119249616	119249616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_139282.1	-1	provisional	p.G53S	0.000	22	0%	15	26.7%	0	-	benign(0.428)	deleterious(0.04)	deleterious(0.488)	NULL
FAM70A	55026	genome.wustl.edu	37	X	119394785	119394785	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017938.3	-1	validated	p.P330	0.991	78	0%	103	29.1%	0	-	-	-	-	NULL
LAMP2	3920	genome.wustl.edu	37	X	119573053	119573053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_013995.2	-1	reviewed	p.V397I	0.999	236	0%	257	30%	75	0%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Lamp
CUL4B	8450	genome.wustl.edu	37	X	119677649	119677649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003588.3	-1	reviewed	p.H415Y	1.000	81	0%	127	15%	44	0%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cullin,superfamily_Cullin repeat
GRIA3	2892	genome.wustl.edu	37	X	122319814	122319814	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000828.4	+1	reviewed	p.P80L	0.984	213	0%	297	29%	0	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122799588	122799588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081550.1	-1	validated	p.V431M	0.917	841	0%	529	30.2%	13	0%	possibly_damaging(0.609)	deleterious(0.04)	deleterious(0.560)	NULL
STAG2	10735	genome.wustl.edu	37	X	123179133	123179133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042749.1	+1	validated	p.E194D	1.000	441	0%	441	29.5%	34	0%	benign(0.378)	tolerated(0.19)	neutral(0.170)	HMMPfam_STAG,superfamily_ARM-type_fold
STAG2	10735	genome.wustl.edu	37	X	123224531	123224531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042749.1	+1	validated	p.E1128D	0.997	266	0%	326	33.1%	116	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_ARM-type_fold
ODZ1	10178	genome.wustl.edu	37	X	123556289	123556289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014253.3	-1	reviewed	p.A1428V	1.000	171	0%	182	35.7%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_N2O_reductase_N,superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123785928	123785928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014253.3	-1	reviewed	p.D472G	1.000	190	0%	189	31.7%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
DCAF12L2	340578	genome.wustl.edu	37	X	125299059	125299059	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013628.2	-1	reviewed	p.D283	0.669	53	0%	28	21.4%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
DCAF12L2	340578	genome.wustl.edu	37	X	125299551	125299551	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013628.2	-1	reviewed	p.T119	1.000	43	0%	27	33.3%	1	0%	-	-	-	superfamily_WD40_like
DCAF12L1	139170	genome.wustl.edu	37	X	125685938	125685938	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178470.4	-1	reviewed	p.A218	0.000	31	0%	29	34.5%	10	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
DCAF12L1	139170	genome.wustl.edu	37	X	125686197	125686197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178470.4	-1	reviewed	p.R132H	0.000	35	0%	50	40%	13	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_WD40_like
DCAF12L1	139170	genome.wustl.edu	37	X	125686340	125686340	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178470.4	-1	reviewed	p.P84	0.003	39	0%	32	50%	6	0%	-	-	-	superfamily_WD40_like
DCAF12L1	139170	genome.wustl.edu	37	X	125686451	125686451	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_178470.4	-1	reviewed	p.T47	0.000	32	0%	23	34.8%	4	0%	-	-	-	NULL
SMARCA1	6594	genome.wustl.edu	37	X	128599652	128599652	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003069.3	-1	reviewed	p.G959*	1.000	308	0%	382	15.4%	111	0%	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_SLIDE
SMARCA1	6594	genome.wustl.edu	37	X	128624133	128624133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003069.3	-1	reviewed	p.R618C	1.000	145	0%	151	22.5%	74	0%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA1	6594	genome.wustl.edu	37	X	128645923	128645923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003069.3	-1	reviewed	p.G223D	1.000	554	0%	648	12.2%	39	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
OCRL	4952	genome.wustl.edu	37	X	128710406	128710406	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000276.3	+1	reviewed	p.G664	1.000	282	0%	234	33.3%	21	0%	-	-	-	NULL
XPNPEP2	7512	genome.wustl.edu	37	X	128895223	128895223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003399.5	+1	reviewed	p.G525D	1.000	35	0%	36	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,PatternScan_PROLINE_PEPTIDASE
SASH3	54440	genome.wustl.edu	37	X	128927022	128927022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018990.3	+1	reviewed	p.L287M	1.000	89	0%	80	25%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
BCORL1	63035	genome.wustl.edu	37	X	129185902	129185902	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021946.3	+1	reviewed	p.D1588	0.241	151	0%	247	40.5%	10	0%	-	-	-	NULL
ZNF280C	55609	genome.wustl.edu	37	X	129349177	129349177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017666.4	-1	validated	p.H657Y	1.000	365	0%	377	31%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
RBMX2	51634	genome.wustl.edu	37	X	129546644	129546644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016024.2	+1	validated	p.T264I	0.032	203	0%	293	14%	67	0%	benign(0.303)	deleterious(0.03)	neutral(0.459)	NULL
ENOX2	10495	genome.wustl.edu	37	X	129771277	129771277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182314.1	-1	reviewed	p.V442I	0.306	411	0%	354	25.7%	19	0%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
ENOX2	10495	genome.wustl.edu	37	X	129804065	129804065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182314.1	-1	reviewed	p.R219C	1.000	156	0.6%	159	36.5%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130218608	130218608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144967.3	+1	validated	p.A253T	0.519	269	0%	317	32.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP36	158763	genome.wustl.edu	37	X	130219571	130219571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_144967.3	+1	validated	p.P322L	0.125	1310	0.1%	1191	26.6%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
IGSF1	3547	genome.wustl.edu	37	X	130415767	130415767	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001555.4	-1	reviewed	p.N466	0.906	167	0%	170	29.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OR13H1	347468	genome.wustl.edu	37	X	130678730	130678730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001004486.1	+1	provisional	p.R228H	0.000	939	0.2%	861	17%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_7tm_1,superfamily_SSF81321
MST4	51765	genome.wustl.edu	37	X	131206847	131206847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_016542.3	+1	reviewed	p.D345Y	1.000	223	0%	266	10.9%	24	0%	possibly_damaging(0.502)	tolerated(0.09)	neutral(0.464)	NULL
HS6ST2	90161	genome.wustl.edu	37	X	131762417	131762417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077188.1	-1	reviewed	p.P591L	0.003	69	0%	84	39.3%	1	0%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
HS6ST2	90161	genome.wustl.edu	37	X	132091270	132091270	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001077188.1	-1	reviewed	p.Y171	1.000	34	0%	37	35.1%	1	0%	-	-	-	NULL
FAM127B	26071	genome.wustl.edu	37	X	134186079	134186079	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001078172.1	-1	validated	p.A20	0.412	64	0%	60	23.3%	107	0%	-	-	-	NULL
ZNF75D	7626	genome.wustl.edu	37	X	134427806	134427806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_007131.3	-1	reviewed	p.Q87H	0.945	176	0%	210	33.8%	3	0%	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_SCAN,HMMSmart_SCAN
DDX26B	203522	genome.wustl.edu	37	X	134711320	134711320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_182540.4	+1	validated	p.P659L	0.984	409	0%	645	29.5%	4	0%	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134989925	134989925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_018666.2	+1	reviewed	p.A362T	0.003	201	0%	280	13.2%	0	-	possibly_damaging(0.484)	tolerated(0.15)	neutral(0.401)	NULL
MMGT1	93380	genome.wustl.edu	37	X	135053266	135053266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173470.1	-1	provisional	p.R28H	1.000	216	0%	312	32.1%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tmemb_32
SLC9A6	10479	genome.wustl.edu	37	X	135095205	135095205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042537.1	+1	reviewed	p.G380D	1.000	205	0%	193	13%	5	0%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_Na_H_Exchanger
SLC9A6	10479	genome.wustl.edu	37	X	135126673	135126673	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001042537.1	+1	reviewed	p.L632	1.000	138	0%	156	28.2%	9	0%	-	-	-	NULL
FHL1	2273	genome.wustl.edu	37	X	135290070	135290070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001449.4	+1	reviewed	p.V151M	1.000	142	0%	143	25.2%	7	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
GPR112	139378	genome.wustl.edu	37	X	135405499	135405499	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153834.3	+1	reviewed	p.D211	0.770	361	0%	489	32.1%	0	-	-	-	-	superfamily_ConA_like_lec_gl
GPR112	139378	genome.wustl.edu	37	X	135429141	135429141	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_153834.3	+1	reviewed	p.T1092	0.000	1224	0%	1346	36.3%	0	-	-	-	-	NULL
BRS3	680	genome.wustl.edu	37	X	135574151	135574151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001727.1	+1	validated	p.V273I	0.996	117	0%	164	23.8%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_7tm_1,superfamily_SSF81321
HTATSF1	27336	genome.wustl.edu	37	X	135591316	135591316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_014500.4	+1	reviewed	p.I301V	1.000	114	0%	151	28.5%	78	0%	benign(0)	tolerated(1)	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
MIR934	100126324	genome.wustl.edu	37	X	135633087	135633087	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000401241	+1	known	NULL	0.001	99	0%	76	35.5%	0	-	-	-	-	-
ARHGEF6	9459	genome.wustl.edu	37	X	135762943	135762943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004840.2	-1	reviewed	p.A551T	0.011	303	0%	384	15.1%	2	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
GPR101	83550	genome.wustl.edu	37	X	136113784	136113784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_054021.1	-1	validated	p.T17M	0.848	40	2.5%	52	28.8%	0	-	possibly_damaging(0.605)	deleterious(0.03)	deleterious(0.574)	superfamily_Family A G protein-coupled receptor-like
F9	2158	genome.wustl.edu	37	X	138623335	138623335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000133.3	+1	reviewed	p.K126N	0.975	139	0%	113	15.9%	0	-	benign(0.165)	tolerated(0.11)	neutral(0.287)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2
MCF2	4168	genome.wustl.edu	37	X	138701779	138701779	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001099855.1	-1	reviewed	p.I318	0.000	124	0%	118	32.2%	0	-	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
ATP11C	286410	genome.wustl.edu	37	X	138823228	138823228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173694.4	-1	validated	p.T1022M	1.000	108	0%	114	27.2%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LDOC1	23641	genome.wustl.edu	37	X	140271116	140271116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_012317.2	-1	reviewed	p.R31W	1.000	31	0%	51	29.4%	42	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SPANXD	64648	genome.wustl.edu	37	X	140785775	140785775	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032417.2	-1	reviewed	p.S47	0.000	581	0%	593	35.9%	0	-	-	-	-	HMMPfam_SPAN-X
MAGEC1	9947	genome.wustl.edu	37	X	140996289	140996289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005462.4	+1	reviewed	p.E1033D	0.004	278	0%	217	35%	0	-	probably_damaging(0.996)	tolerated(0.31)	deleterious(0.489)	HMMPfam_MAGE
SPANXN4	441525	genome.wustl.edu	37	X	142113830	142113830	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009613.2	+1	reviewed	p.E10	0.001	84	0%	68	30.9%	0	-	-	-	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144905219	144905219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001144003.2	+1	reviewed	p.R426C	1.000	177	0%	194	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
MIR891B	100126304	genome.wustl.edu	37	X	145082595	145082595	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000401245	-1	known	NULL	0.000	141	0%	116	30.2%	0	-	-	-	-	-
MIR506	574511	genome.wustl.edu	37	X	146312287	146312287	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000384998	-1	known	NULL	0.002	430	0.2%	648	15.1%	0	-	-	-	-	-
FMR1	2332	genome.wustl.edu	37	X	147024667	147024667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002024.5	+1	reviewed	p.R431H	1.000	209	0%	298	32.2%	55	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
AFF2	2334	genome.wustl.edu	37	X	147743706	147743706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002025.3	+1	reviewed	p.R153K	1.000	898	0%	761	26.9%	0	-	probably_damaging(0.973)	tolerated(1)	neutral(0.415)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148035209	148035209	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002025.3	+1	reviewed	p.D499	1.000	244	0%	269	10.4%	0	-	-	-	-	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148037584	148037584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002025.3	+1	reviewed	p.R670H	0.996	350	0%	331	38.4%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148037822	148037822	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002025.3	+1	reviewed	p.I749	0.000	254	0%	238	14.7%	0	-	-	-	-	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148072840	148072840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_002025.3	+1	reviewed	p.R1305H	1.000	214	0%	201	31.8%	0	-	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMPfam_AF-4
IDS	3423	genome.wustl.edu	37	X	148585690	148585690	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000202.5	-1	reviewed	p.A79	0.324	26	0%	28	21.4%	13	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
CXorf40B	541578	genome.wustl.edu	37	X	149101943	149101943	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001013845.1	-1	validated	p.G50	0.005	109	0%	140	30.7%	94	0%	-	-	-	NULL
MTM1	4534	genome.wustl.edu	37	X	149767149	149767149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000252.2	+1	reviewed	p.T77M	1.000	114	0%	109	30.3%	6	0%	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729
MTMR1	8776	genome.wustl.edu	37	X	149924250	149924250	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000445323	+1	known	p.P116S	1.000	137	0%	151	34.4%	31	0%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR1	8776	genome.wustl.edu	37	X	149931131	149931131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_003828.2	+1	reviewed	p.A643T	0.331	54	0%	57	10.5%	14	0%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
GPR50	9248	genome.wustl.edu	37	X	150349106	150349106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004224.3	+1	reviewed	p.R351C	0.000	260	0%	339	31.3%	0	-	possibly_damaging(0.652)	deleterious(0)	deleterious(0.673)	NULL
PASD1	139135	genome.wustl.edu	37	X	150842652	150842652	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_173493.2	+1	reviewed	p.Y723	0.000	204	0%	315	33.3%	0	-	-	-	-	NULL
PRRG3	79057	genome.wustl.edu	37	X	150869137	150869137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024082.3	+1	validated	p.R110C	0.953	89	0%	91	28.6%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
MAGEA4	4103	genome.wustl.edu	37	X	151092299	151092299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001011548.1	+1	reviewed	p.P55S	0.000	22	0%	37	27%	0	-	benign(0.004)	tolerated(0.44)	neutral(0.013)	NULL
MAGEA5	4104	genome.wustl.edu	37	X	151283765	151283765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_021049.3	-1	reviewed	p.S83F	0.000	78	0%	54	35.2%	0	-	-	-	-	NULL
GABRA3	2556	genome.wustl.edu	37	X	151376484	151376484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_000808.3	-1	reviewed	p.R256Q	1.000	224	0%	281	31.7%	0	-	possibly_damaging(0.756)	tolerated(0.34)	neutral(0.302)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
NSDHL	50814	genome.wustl.edu	37	X	152034374	152034374	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001129765.1	+1	reviewed	p.G185	0.000	103	0%	127	31.5%	81	0%	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
PNMA5	114824	genome.wustl.edu	37	X	152158983	152158983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001103150.1	-1	validated	p.P387L	0.000	106	0%	80	32.5%	0	-	benign(0)	tolerated(1)	-	NULL
ZNF275	10838	genome.wustl.edu	37	X	152612966	152612966	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001080485.2	+1	validated	p.R275*	0.845	95	0%	141	28.4%	10	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HAUS7	55559	genome.wustl.edu	37	X	152720502	152720502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000370212	-1	known	p.G324C	0.000	40	0%	55	21.8%	3	0%	unknown(0)	deleterious(0.01)	-	NULL
ATP2B3	492	genome.wustl.edu	37	X	152806990	152806990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001001344.2	+1	reviewed	p.A128T	0.951	26	0%	15	26.7%	0	-	benign(0.025)	tolerated(0.28)	neutral(0.033)	superfamily_Calcium ATPase transmembrane domain M
IDH3G	3421	genome.wustl.edu	37	X	153052993	153052993	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000454076	-1	known	p.C6R	0.795	11	0%	14	50%	145	0%	-	-	-	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
PDZD4	57595	genome.wustl.edu	37	X	153069032	153069032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_032512.2	-1	provisional	p.E696K	1.000	5	0.000	16	0.250	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
AVPR2	554	genome.wustl.edu	37	X	153171578	153171578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	ENST00000434679	+1	known	p.S44L	1.000	30	0%	54	42.6%	0	-	unknown(0)	-	-	NULL
ARHGAP4	393	genome.wustl.edu	37	X	153174592	153174592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001666.4	-1	reviewed	p.G847R	0.009	6	0.000	18	0.389	5	0%	benign(0.01)	deleterious(0.02)	neutral(0.384)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153220866	153220866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005334.2	-1	reviewed	p.T995I	0.996	11	0%	18	27.8%	47	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
DNASE1L1	1774	genome.wustl.edu	37	X	153631618	153631618	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001009932.1	-1	reviewed	p.Q173*	0.973	28	0%	62	21%	29	0%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,HMMSmart_DNaseIc
FAM50A	9130	genome.wustl.edu	37	X	153678573	153678573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_004699.2	+1	reviewed	p.V306A	1.000	26	0%	33	27.3%	335	0.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_XAP5
PLXNA3	55558	genome.wustl.edu	37	X	153699459	153699459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_017514.3	+1	reviewed	p.R1723H	1.000	6	0.000	28	0.393	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
GAB3	139716	genome.wustl.edu	37	X	153924247	153924247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001081573.1	-1	reviewed	p.A492V	0.995	129	0%	120	34.2%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
BRCC3	79184	genome.wustl.edu	37	X	154348306	154348306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_024332.2	+1	reviewed	p.A278T	1.000	263	0%	284	34.9%	51	0%	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	NULL
RAB39B	116442	genome.wustl.edu	37	X	154490501	154490501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_171998.2	-1	reviewed	p.A77T	0.998	513	0%	501	24.8%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLIC2	1193	genome.wustl.edu	37	X	154528203	154528203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001289.4	-1	reviewed	p.D63G	1.000	331	0.3%	475	17.5%	7	0%	benign(0.092)	tolerated(0.08)	neutral(0.307)	superfamily_Thioredoxin-like
CLIC2	1193	genome.wustl.edu	37	X	154563727	154563727	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_001289.4	-1	reviewed	p.L4	0.137	640	0%	569	32.2%	2	0%	-	-	-	NULL
SPRY3	10251	genome.wustl.edu	37	X	155003805	155003805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005840.1	+1	validated	p.S91N	0.997	428	0%	448	29%	2	0%	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	NULL
SPRY3	10251	genome.wustl.edu	37	X	155003935	155003935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J1-01A-11W-A062-09	TCGA-AX-A0J1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	452fda5c-498b-43c2-893d-2b204f2d250a	e81d990b-3bc2-4a67-8076-b89517708c4c	NM_005840.1	+1	validated	p.E134D	0.976	278	0%	295	33.2%	1	0%	benign(0.362)	tolerated(0.48)	neutral(0.126)	NULL
