Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UHMK1	127933	genome.wustl.edu	37	1	162492195	162492195	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_175866.4	+1	reviewed	p.V372G	1.000	971	0%	371	24.8%	4	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CRB1	23418	genome.wustl.edu	37	1	197407768	197407768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_201253.1	+1	reviewed	p.L1281V	0.000	207	0%	146	33.6%	0	-	benign(0.099)	deleterious(0.05)	neutral(0.353)	HMMSmart_SM00181,superfamily_EGF/Laminin
PROM2	150696	genome.wustl.edu	37	2	95947948	95947948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_144707.2	+1	reviewed	p.L568V	1.000	35	0%	54	59.3%	22	68.1%	probably_damaging(0.954)	tolerated(0.3)	neutral(0.426)	HMMPfam_Prominin
IHH	3549	genome.wustl.edu	37	2	219920327	219920327	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_002181.3	-1	reviewed	p.A280fs	0.327	-	-	-	-	-	-	-	-	-	HMMPfam_Hint,HMMSmart_SM00306,superfamily_Hedgehog/intein (Hint) domain
PPP1R7	5510	genome.wustl.edu	37	2	242099901	242099901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_002712.1	+1	provisional	p.R197C	1.000	152	0%	76	22.4%	184	17.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00365,superfamily_L domain-like
MUC4	4585	genome.wustl.edu	37	3	195508228	195508228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_018406.5	-1	reviewed	p.P3280R	0.019	20	0%	442	23.1%	4	75%	probably_damaging(0.968)	-	-	NULL
HCN1	348980	genome.wustl.edu	37	5	45262647	45262647	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_021072.2	-1	validated	p.P683	1.000	318	0%	225	42.7%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79030280	79030280	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_153610.3	+1	validated	p.K1898*	0.401	280	0%	58	89.7%	0	-	-	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12122386	12122386	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_002114.2	+1	validated	p.Y786	1.000	251	0%	71	28.2%	5	80%	-	-	-	NULL
KLC4	89953	genome.wustl.edu	37	6	43034856	43034856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_138343.2	+1	validated	p.R305H	0.000	119	0.8%	55	34.5%	0	-	possibly_damaging(0.725)	tolerated(0.11)	deleterious(0.535)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72889461	72889461	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_014989.4	+1	reviewed	p.Q219*	1.000	41	0%	31	35.5%	0	-	-	-	-	NULL
ZNF679	168417	genome.wustl.edu	37	7	63721259	63721259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_153363.2	+1	validated	p.K72E	0.034	1403	0%	303	45.2%	0	-	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
CALCR	799	genome.wustl.edu	37	7	93055883	93055883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_001742.3	-1	reviewed	p.R404C	1.000	47	0%	43	39.5%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_SSF81321
ZSCAN21	7589	genome.wustl.edu	37	7	99661636	99661637	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_145914.2	+1	validated	p.R275fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CUX1	1523	genome.wustl.edu	37	7	101459338	101459338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_001913.2	+1	reviewed	p.Q10E	1.000	27	0%	37	32.4%	5	0%	benign(0.001)	tolerated(0.78)	neutral(0.001)	NULL
LGI3	203190	genome.wustl.edu	37	8	22005980	22005980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_139278.2	-1	validated	p.K447R	1.000	51	0%	22	31.8%	0	-	possibly_damaging(0.678)	tolerated(0.26)	neutral(0.275)	HMMPfam_EPTP
KANK1	23189	genome.wustl.edu	37	9	712175	712175	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_015158.2	+1	reviewed	p.Y470F	1.000	129	0%	67	49.3%	5	20%	benign(0.004)	deleterious(0.02)	neutral(0.383)	superfamily_ANK
AKR1CL1	340811	genome.wustl.edu	37	10	5203925	5203925	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000380510	-1	known	p.T91S	0.634	324	0%	149	30.2%	0	-	benign(0.053)	tolerated(0.09)	neutral(0.300)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
ARID5B	84159	genome.wustl.edu	37	10	63851192	63851192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_032199.2	+1	validated	p.F657Y	1.000	98	0%	50	22%	0	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000371953	+1	known	p.R130G	1.000	676	0%	304	86.8%	36	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
RHOG	391	genome.wustl.edu	37	11	3849021	3849021	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_001665.3	-1	validated	p.K116	1.000	68	0%	27	77.8%	37	43.2%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000181950	0	genome.wustl.edu	37	11	55234610	55234610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000314689	+1	known	p.V27M	1.000	102	0%	101	18.8%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR8H3	390152	genome.wustl.edu	37	11	55890223	55890223	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_001005201.1	+1	provisional	p.A125	0.995	557	0%	338	33.4%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
ZFP91	80829	genome.wustl.edu	37	11	58384226	58384226	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_053023.3	+1	reviewed	p.A380	1.000	343	0%	138	28.3%	8	12.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C11orf24	53838	genome.wustl.edu	37	11	68029679	68029679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_022338.3	-1	validated	p.V262M	0.000	90	0%	156	26.9%	18	11.1%	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	NULL
SCNN1B	6338	genome.wustl.edu	37	16	23366676	23366676	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_000336.2	+1	reviewed	p.A214	0.280	147	0%	55	34.5%	10	80%	-	-	-	HMMPfam_ASC
EXOC3L1	283849	genome.wustl.edu	37	16	67218648	67218648	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000314553	-1	known	p.R590*	0.904	5	0.000	10	0.400	1	100%	-	-	-	HMMPfam_Sec6
GLP2R	9340	genome.wustl.edu	37	17	9764496	9764496	+	Silent	SNP	T	T	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000458005	+1	known	p.V175E	0.006	448	0%	155	35.5%	0	-	-	-	-	HMMPfam_7tm_2
ZNF286A	57335	genome.wustl.edu	37	17	15620048	15620048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_001130842.1	+1	validated	p.R337Q	0.188	417	0%	186	31.2%	3	0%	probably_damaging(0.987)	tolerated(1)	neutral(0.436)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RNF43	54894	genome.wustl.edu	37	17	56437606	56437606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_017763.4	-1	validated	p.R286W	1.000	139	0%	65	86.2%	24	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
GPS1	2873	genome.wustl.edu	37	17	80013008	80013008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000392357	+1	known	p.G207W	0.000	7	0.000	44	0.955	1	100%	probably_damaging(1)	-	-	HMMPfam_RPN7
THEG	51298	genome.wustl.edu	37	19	375850	375850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_016585.3	-1	reviewed	p.R41W	0.000	6	0.000	23	0.391	0	-	probably_damaging(0.972)	tolerated(0.12)	deleterious(0.674)	NULL
NDUFB7	4713	genome.wustl.edu	37	19	14677665	14677665	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_004146.4	-1	reviewed	p.R65G	0.637	31	0%	33	39.4%	415	46.9%	benign(0.106)	tolerated(0.32)	neutral(0.032)	HMMPfam_NDUF_B7
MIR525	574470	genome.wustl.edu	37	19	54200837	54200837	+	RNA	SNP	A	A	G	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	ENST00000384978	+1	known	NULL	0.002	487	0%	280	38.9%	0	-	-	-	-	-
FCAR	2204	genome.wustl.edu	37	19	55399595	55399595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_002000.2	+1	reviewed	p.G195S	0.003	95	0%	57	40.4%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RALGAPB	57148	genome.wustl.edu	37	20	37161462	37161462	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_020336.2	+1	validated	p.P735	0.589	315	0%	113	48.7%	0	-	-	-	-	NULL
ATP9A	10079	genome.wustl.edu	37	20	50245601	50245601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_006045.1	-1	validated	p.T560S	0.990	263	0%	134	47.8%	2	50%	benign(0.003)	tolerated(0.76)	neutral(0.001)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
UBA1	7317	genome.wustl.edu	37	X	47065396	47065397	+	In_Frame_Ins	INS	-	-	TAT	novel		TCGA-BG-A0M2-01A-11D-A10O-09	TCGA-BG-A0M2-10A-02W-A10C-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7645c31-686b-4442-b72e-dd944bf6bfec	73689ebf-5780-4563-80c5-ee9676903b16	NM_003334.3	+1	reviewed	p.544in_frame_insI	0.097:0.101	-	-	-	-	-	-	-	-	-	HMMPfam_ThiF,superfamily_MoeB
