Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27097802	27097802	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_006015.4	+1	reviewed	p.Q1131*	1.000	75	0%	69	40.6%	3	33.3%	-	-	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152382933	152382933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_016190.2	-1	reviewed	p.E209K	0.194	503	0%	748	43.6%	0	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	NULL
GORAB	92344	genome.wustl.edu	37	1	170521202	170521202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_152281.2	+1	reviewed	p.D262N	1.000	64	0%	126	12.7%	4	0%	possibly_damaging(0.943)	tolerated(0.12)	deleterious(0.648)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177929518	177929518	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_033127.2	-1	validated	p.E319D	0.911	115	0%	134	38.1%	0	-	benign(0.427)	tolerated(0.44)	neutral(0.152)	NULL
PLA2G4A	5321	genome.wustl.edu	37	1	186839609	186839609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_024420.2	+1	reviewed	p.R26S	0.956	136	0%	260	41.5%	1	100%	benign(0.069)	deleterious(0.01)	neutral(0.410)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MARK1	4139	genome.wustl.edu	37	1	220809358	220809358	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_018650.3	+1	validated	p.T487S	0.366	98	0%	326	41.1%	1	100%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
CCDC164	92749	genome.wustl.edu	37	2	26678039	26678039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_145038.2	+1	validated	p.S702C	0.000	45	0%	19	26.3%	58	63.7%	possibly_damaging(0.502)	deleterious(0.04)	deleterious(0.516)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197597262	197597262	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001080539.1	+1	provisional	p.Y1094*	0.002	107	0%	217	38.2%	2	0%	-	-	-	NULL
ASIC4	55515	genome.wustl.edu	37	2	220396780	220396780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_018674.4	+1	reviewed	p.P389L	1.000	54	0%	43	46.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_ASC
SCN10A	6336	genome.wustl.edu	37	3	38802218	38802218	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_006514.2	-1	validated	p.R302*	0.000	96	0%	115	47.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN11A	11280	genome.wustl.edu	37	3	38950678	38950678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_014139.2	-1	validated	p.R370H	0.030	155	0%	408	43.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MAP4	4134	genome.wustl.edu	37	3	47951630	47951630	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_030884.3	-1	reviewed	p.N34	0.000	103	0%	227	44.9%	1	100%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916933	178916933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_006218.2	+1	reviewed	p.N107S	1.000	62	0%	152	34.2%	0	-	benign(0.015)	tolerated(0.2)	neutral(0.050)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236
KIAA0922	23240	genome.wustl.edu	37	4	154544192	154544192	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_015196.3	+1	validated	p.G1333	0.922	43	0%	66	40.9%	2	50%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589615	67589629	+	In_Frame_Del	DEL	AGTCGAGAATATGAT	AGTCGAGAATATGAT	-	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	AGTCGAGAATATGAT	AGTCGAGAATATGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_181523.1	+1	reviewed	p.SREYD460in_frame_del	1.000:0.999:0.929:0.484:0.483:0.234:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MFAP3	4238	genome.wustl.edu	37	5	153429189	153429189	+	RNA	SNP	C	C	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NR_024152.1	+1	validated	NULL	0.000	56	0%	61	36.1%	0	-	-	-	-	-
EXOC2	55770	genome.wustl.edu	37	6	633084	633084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_018303.4	-1	reviewed	p.T51K	1.000	163	0%	160	40%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_TIG,superfamily_Ig_E-set
HIST1H2AG	8969	genome.wustl.edu	37	6	27101174	27101174	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_021064.4	+1	reviewed	p.V108	0.988	111	0%	100	40%	0	-	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
DNAH8	1769	genome.wustl.edu	37	6	38718264	38718265	+	Frame_Shift_Ins	INS	-	-	TGGA	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001371.2	+1	validated	p.A221fs	0.966:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DHC_N1
CSMD1	64478	genome.wustl.edu	37	8	4277514	4277514	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_033225.5	-1	validated	p.F126V	1.000	116	0%	178	54.5%	0	-	benign(0.206)	tolerated(0.45)	neutral(0.032)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
NRG1	3084	genome.wustl.edu	37	8	32505615	32505615	+	Missense_Mutation	SNP	G	G	A	rs34822181	byCluster;byFrequency;by1000genomes	TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_013959.3	+1	reviewed	p.A127T	1.000	168	0%	406	31.3%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73150942	73150942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001007471.2	-1	reviewed	p.R1684Q	1.000	211	0%	167	40.7%	0	-	possibly_damaging(0.559)	deleterious(0.02)	deleterious(0.574)	NULL
ITGA8	8516	genome.wustl.edu	37	10	15730038	15730038	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_003638.1	-1	provisional	e3-1	1.000	178	0%	239	46.4%	0	-	-	-	-	-
KIAA1217	56243	genome.wustl.edu	37	10	24809086	24809086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_019590.3	+1	validated	p.D738Y	1.000	123	0%	77	23.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T	rs121909224	byCluster	TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	ENST00000371953	+1	known	p.R130*	1.000	177	0%	498	42.4%	1	100%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692961	89692961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	ENST00000371953	+1	known	p.Q149*	1.000	141	0%	322	43.5%	2	0%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
TDRD1	56165	genome.wustl.edu	37	10	115961251	115961251	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_198795.1	+1	reviewed	p.I204	0.136	48	0%	71	38%	1	0%	-	-	-	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1
ENSG00000166007	0	genome.wustl.edu	37	11	55062037	55062038	+	In_Frame_Ins	INS	-	-	TGAGTA	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	ENST00000309470	-1	known	p.229in_frame_insIL	0.033:0.033	-	-	-	-	-	-	-	-	-	NULL
SLC22A8	9376	genome.wustl.edu	37	11	62782228	62782228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_004254.3	-1	reviewed	p.G68E	0.926	275	0%	208	43.3%	0	-	probably_damaging(0.994)	tolerated(0.24)	deleterious(0.489)	HMMPfam_MFS_1
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_033360.2	-1	reviewed	p.G12V	1.000	181	0%	290	35.2%	3	33.3%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPR2	3709	genome.wustl.edu	37	12	26572096	26572096	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_002223.2	-1	validated	p.T2332	0.990	82	0%	131	40.5%	1	0%	-	-	-	HMMPfam_Ion_trans
CKAP4	10970	genome.wustl.edu	37	12	106632986	106632986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_006825.3	-1	validated	p.S542L	0.996	113	0%	51	43.1%	45	42.2%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
ZCCHC8	55596	genome.wustl.edu	37	12	122958508	122958508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_017612.2	-1	validated	p.V554I	0.585	93	0%	80	38.8%	14	42.8%	benign(0.366)	deleterious(0)	deleterious(0.561)	NULL
FRY	10129	genome.wustl.edu	37	13	32698450	32698450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_023037.2	+1	validated	p.M164I	1.000	50	0%	100	31%	0	-	benign(0.053)	tolerated(0.29)	neutral(0.033)	NULL
SETDB2	83852	genome.wustl.edu	37	13	50055186	50055186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_031915.2	+1	validated	p.Q376K	1.000	199	0%	297	34.7%	4	25%	benign(0)	tolerated(1)	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ING1	3621	genome.wustl.edu	37	13	111372127	111372127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_005537.3	+1	reviewed	p.E373*	1.000	85	0%	27	48.1%	23	47.8%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
BAG5	9529	genome.wustl.edu	37	14	104026329	104026329	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001015049.1	-1	reviewed	p.T432	0.007	88	0%	55	29.1%	15	33.3%	-	-	-	HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain
FAM92A1P1	729073	genome.wustl.edu	37	15	41456051	41456051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	ENST00000287660	+1	known	p.A128S	1.000	175	0%	454	39.9%	5	0%	-	-	-	HMMPfam_DUF1208
PRTG	283659	genome.wustl.edu	37	15	55921130	55921130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_173814.4	-1	validated	p.N899S	1.000	143	0%	261	36.8%	0	-	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CTCF	10664	genome.wustl.edu	37	16	67645273	67645273	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_006565.2	+1	reviewed	p.Q180*	1.000	97	0%	141	36.2%	2	0%	-	-	-	NULL
ZBTB4	57659	genome.wustl.edu	37	17	7366743	7366743	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001128833.1	-1	validated	p.R520*	0.993	117	0%	61	44.3%	10	30%	-	-	-	NULL
ITGA3	3675	genome.wustl.edu	37	17	48166613	48166613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_005501.2	+1	reviewed	p.R1062Q	0.038	73	1.4%	51	51%	21	42.8%	probably_damaging(0.978)	tolerated(0.45)	neutral(0.432)	NULL
BRIP1	83990	genome.wustl.edu	37	17	59858343	59858343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_032043.1	-1	reviewed	p.A551V	1.000	158	0%	316	44%	1	0%	probably_damaging(0.999)	tolerated(0.49)	deleterious(0.501)	NULL
SSTR2	6752	genome.wustl.edu	37	17	71165967	71165967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001050.2	+1	reviewed	p.S170F	1.000	83	0%	50	38%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LMAN1	3998	genome.wustl.edu	37	18	57006155	57006155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_005570.3	-1	reviewed	p.R329Q	1.000	180	0%	465	39.4%	15	46.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MAST3	23031	genome.wustl.edu	37	19	18233549	18233553	+	Frame_Shift_Del	DEL	CTCCA	CTCCA	-	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	CTCCA	CTCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_015016.1	+1	validated	p.S101fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1908
LGI4	163175	genome.wustl.edu	37	19	35616204	35616204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_139284.2	-1	validated	p.R503C	0.884	78	0%	32	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RYR1	6261	genome.wustl.edu	37	19	38956903	38956903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_000540.2	+1	reviewed	p.R1015C	0.964	22	0%	42	47.6%	0	-	probably_damaging(0.998)	-	-	HMMPfam_RyR
CYP2B7P1	1556	genome.wustl.edu	37	19	41447340	41447340	+	RNA	SNP	G	G	A	rs28399497	byCluster;byFrequency	TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NR_001278.1	+1	provisional	NULL	0.410	100	0%	270	21.9%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	-
SLC8A2	6543	genome.wustl.edu	37	19	47941145	47941145	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_015063.2	-1	validated	p.C657	0.998	133	0%	111	39.6%	0	-	-	-	-	NULL
EIF6	3692	genome.wustl.edu	37	20	33868572	33868572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_002212.2	-1	reviewed	p.R85H	1.000	260	0%	94	43.6%	157	29.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_eIF-6,HMMSmart_SM00654,superfamily_Pentein
DHX35	60625	genome.wustl.edu	37	20	37652346	37652346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_021931.2	+1	reviewed	p.R536H	1.000	116	0%	192	39.6%	0	-	benign(0.364)	deleterious(0.05)	neutral(0.461)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
DIP2A	23181	genome.wustl.edu	37	21	47931424	47931424	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_015151.3	+1	reviewed	p.P333	0.013	52	0%	67	37.3%	0	-	-	-	-	NULL
CCT8L2	150160	genome.wustl.edu	37	22	17072267	17072267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_014406.4	-1	validated	p.V392I	0.917	127	0%	48	39.6%	0	-	benign(0.043)	tolerated(1)	neutral(0.003)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
GTPBP1	9567	genome.wustl.edu	37	22	39111959	39111959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_004286.4	+1	reviewed	p.A118T	1.000	85	0%	115	83.5%	12	75%	benign(0.022)	tolerated(0.54)	neutral(0.009)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40661483	40661483	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_015088.2	+1	validated	p.R417*	1.000	154	0%	237	84.8%	1	100%	-	-	-	NULL
EFCAB6	64800	genome.wustl.edu	37	22	43950818	43950818	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_022785.2	-1	validated	p.T1193	0.000	182	0%	142	37.3%	9	55.5%	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
ENSG00000211459	0	genome.wustl.edu	37	MT	874	874	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	ENST00000389680	+1	known	NULL	NULL	88	0%	115	53.9%	2821	43.6%	-	-	-	-
PLCXD1	55344	genome.wustl.edu	37	X	205502	205502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_018390.3	+1	reviewed	p.T77M	0.661	210	0%	40	40%	3	66.6%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	superfamily_PLC-like_Pdiesterase_TIM-brl
SHROOM4	57477	genome.wustl.edu	37	X	50350500	50350500	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_020717.3	-1	reviewed	p.D1214	0.001	121	0%	186	41.9%	0	-	-	-	-	HMMPfam_ASD2
PCDH19	57526	genome.wustl.edu	37	X	99663256	99663256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001105243.1	-1	reviewed	p.V114M	1.000	125	0%	31	58.1%	0	-	benign(0.007)	tolerated(0.4)	neutral(0.016)	HMMSmart_CA,superfamily_Cadherin
PAK3	5063	genome.wustl.edu	37	X	110416268	110416268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001128168.1	+1	reviewed	p.D299E	1.000	164	0%	533	39.2%	0	-	benign(0.406)	deleterious(0)	deleterious(0.575)	superfamily_Kinase_like
MCF2	4168	genome.wustl.edu	37	X	138672082	138672082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_001099855.1	-1	reviewed	p.D821A	1.000	166	0%	314	42.4%	0	-	benign(0.07)	tolerated(0.37)	neutral(0.024)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MAGEA5	4104	genome.wustl.edu	37	X	151283933	151283933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M9-01A-21W-A10C-09	TCGA-BG-A0M9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f5f7329b-47bb-4a5c-9358-c6cdf82984ec	b93411b1-b744-4dd4-b47f-f7a6c5e3ba18	NM_021049.3	-1	reviewed	p.G27V	0.000	64	0%	10	50%	0	-	-	-	-	NULL
