Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CEP104	9731	genome.wustl.edu	37	1	3742976	3742976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014704.3	-1	validated	p.P738L	0.000	92	0%	117	41%	8	75%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
NPHP4	261734	genome.wustl.edu	37	1	6027413	6027413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015102.2	-1	reviewed	p.Y155H	0.973	69	0%	34	26.5%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TNFRSF9	3604	genome.wustl.edu	37	1	7998852	7998852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001561.4	-1	reviewed	p.S46N	0.000	280	0%	302	34.8%	2	0%	benign(0.058)	tolerated(0.47)	neutral(0.014)	NULL
EXOSC10	5394	genome.wustl.edu	37	1	11134328	11134328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001001998.1	-1	validated	p.A681V	1.000	515	0%	561	12.1%	59	8.4%	probably_damaging(0.96)	tolerated(0.09)	deleterious(0.700)	NULL
PRDM2	7799	genome.wustl.edu	37	1	14107335	14107335	+	Silent	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_012231.4	+1	reviewed	p.T1015	0.000	355	0%	251	36.3%	1	100%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16242708	16242708	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000442985	+1	known	p.A183V	0.988	357	0%	428	28.5%	2	50%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PADI1	29943	genome.wustl.edu	37	1	17570695	17570695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_013358.2	+1	reviewed	p.R650H	1.000	93	0%	63	41.3%	0	-	possibly_damaging(0.699)	tolerated(0.13)	deleterious(0.504)	HMMPfam_PAD,superfamily_Pentein
ECE1	1889	genome.wustl.edu	37	1	21585333	21585333	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001397.2	-1	reviewed	e6-1	1.000	139	0%	100	41%	1	100%	-	-	-	-
LYPLA2	11313	genome.wustl.edu	37	1	24120741	24120741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007260.2	+1	reviewed	p.L133I	1.000	51	0%	31	32.3%	79	39.2%	unknown(0)	deleterious(0)	-	HMMPfam_Abhydrolase_2,superfamily_SSF53474
ARID1A	8289	genome.wustl.edu	37	1	27101300	27101300	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006015.4	+1	reviewed	p.R1528*	1.000	92	0%	53	43.4%	8	75%	-	-	-	NULL
WDTC1	23038	genome.wustl.edu	37	1	27614297	27614297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015023.3	+1	validated	p.T142A	1.000	121	0%	94	37.2%	0	-	possibly_damaging(0.738)	deleterious(0.01)	deleterious(0.675)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RLF	6018	genome.wustl.edu	37	1	40705985	40705986	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_012421.3	+1	validated	p.C1871fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CTPS	1503	genome.wustl.edu	37	1	41473156	41473156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001905.2	+1	validated	p.M444I	1.000	116	0%	117	35.9%	16	12.5%	benign(0.247)	deleterious(0.01)	neutral(0.431)	HMMPfam_GATase,superfamily_SSF52317
B4GALT2	8704	genome.wustl.edu	37	1	44450725	44450725	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001005417.1	+1	reviewed	p.F246	1.000	42	0%	28	46.4%	42	45.2%	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
GBP2	2634	genome.wustl.edu	37	1	89578212	89578212	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004120.3	-1	reviewed	p.T435	0.000	222	0%	267	32.2%	54	27.7%	-	-	-	HMMPfam_GBP_C,superfamily_GBP
HIAT1	64645	genome.wustl.edu	37	1	100547581	100547581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033055.2	+1	validated	p.P430H	1.000	277	0%	338	37%	21	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS_gen_substrate_transporter
SASS6	163786	genome.wustl.edu	37	1	100568612	100568612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_194292.1	-1	validated	p.C525G	0.973	162	0%	263	35%	3	33.3%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
ATXN7L2	127002	genome.wustl.edu	37	1	110029731	110029731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_153340.4	+1	validated	p.P134L	1.000	50	0%	36	38.9%	1	100%	probably_damaging(0.978)	tolerated(0.13)	deleterious(0.673)	NULL
TRIM33	51592	genome.wustl.edu	37	1	114948195	114948195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015906.3	-1	reviewed	p.H869Y	1.000	345	0%	340	40.3%	1	0%	possibly_damaging(0.808)	tolerated(0.08)	deleterious(0.604)	NULL
SF3B4	10262	genome.wustl.edu	37	1	149898475	149898475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005850.3	-1	reviewed	p.L167I	1.000	78	0%	155	18.7%	208	24.5%	benign(0.328)	tolerated(0.2)	neutral(0.152)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PRPF3	9129	genome.wustl.edu	37	1	150310768	150310768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004698.2	+1	reviewed	p.W390G	1.000	199	0%	431	20.2%	49	24.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRP3
TCHH	7062	genome.wustl.edu	37	1	152081633	152081633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007113.2	-1	provisional	p.R1354C	0.000	309	0%	441	20.4%	0	-	unknown(0)	-	-	NULL
RPTN	126638	genome.wustl.edu	37	1	152128690	152128690	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001122965.1	-1	validated	p.Y295	0.000	885	0%	1219	21.7%	0	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152277822	152277822	+	Silent	SNP	T	T	G	rs3126069	byCluster;byFrequency;byHapMap	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002016.1	-1	reviewed	p.S3180	0.000	538	0%	796	18%	0	-	-	-	-	HMMPfam_Filaggrin
NUP210L	91181	genome.wustl.edu	37	1	154090318	154090320	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_207308.2	-1	validated	p.S501in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Invasin_intimin
SHC1	6464	genome.wustl.edu	37	1	154938528	154938528	+	Silent	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000444664	-1	known	p.L90I	1.000	135	0%	192	21.4%	60	11.6%	-	-	-	NULL
DCST1	149095	genome.wustl.edu	37	1	155015884	155015884	+	Silent	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152494.2	+1	validated	p.T357	0.142	30	0%	38	28.9%	0	-	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155448916	155448917	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018489.2	-1	reviewed	p.H1248fs	1.000:0.996	-	-	-	-	-	-	-	-	-	NULL
SMG5	23381	genome.wustl.edu	37	1	156238147	156238147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015327.2	-1	validated	p.K258R	1.000	406	0%	651	20.4%	18	11.1%	possibly_damaging(0.779)	tolerated(0.18)	neutral(0.347)	NULL
NR1I3	9970	genome.wustl.edu	37	1	161199676	161199676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001077482.1	-1	reviewed	p.R329W	1.000	157	0%	196	22.4%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
HSPA6	3310	genome.wustl.edu	37	1	161495797	161495797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002155.3	+1	validated	p.A450V	1.000	185	0%	316	17.4%	6	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
SELL	6402	genome.wustl.edu	37	1	169673709	169673709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000655.4	-1	reviewed	p.V256L	0.993	177	0%	299	24.4%	4	0%	benign(0.228)	tolerated(0.18)	neutral(0.079)	superfamily_Complement_control_module
FAM5B	57795	genome.wustl.edu	37	1	177225152	177225152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021165.2	+1	provisional	p.R123C	1.000	175	0%	326	19%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00457
ANGPTL1	9068	genome.wustl.edu	37	1	178822844	178822844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004673.3	-1	reviewed	p.S301N	1.000	266	0%	453	21.9%	0	-	benign(0.213)	tolerated(0.36)	neutral(0.041)	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
AXDND1	126859	genome.wustl.edu	37	1	179363127	179363127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_144696.4	+1	validated	p.R318H	1.000	275	0%	514	17.7%	0	-	unknown(0)	deleterious(0.01)	-	NULL
LAMC1	3915	genome.wustl.edu	37	1	183093842	183093842	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002293.3	+1	reviewed	p.R826	0.299	224	0%	356	25.6%	23	13%	-	-	-	PatternScan_EGF_LAM_1,superfamily_SSF57196
NCF2	4688	genome.wustl.edu	37	1	183538317	183538317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000433.3	-1	reviewed	p.A225T	1.000	431	0%	737	21.7%	5	20%	benign(0.309)	tolerated(0.47)	neutral(0.107)	NULL
SWT1	54823	genome.wustl.edu	37	1	185153983	185153983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001105518.1	+1	validated	p.V450D	1.000	232	0%	499	21.4%	3	33.3%	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	HMMSmart_PINc,superfamily_SSF88723
TROVE2	6738	genome.wustl.edu	37	1	193038388	193038388	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004600.5	+1	validated	p.G68	1.000	85	0%	194	21.1%	1	0%	-	-	-	HMMPfam_TROVE
CFH	3075	genome.wustl.edu	37	1	196711104	196711104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000186.3	+1	reviewed	p.A1019V	0.000	192	0%	407	24.6%	8	12.5%	benign(0.095)	tolerated(0.28)	neutral(0.038)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
IPO9	55705	genome.wustl.edu	37	1	201826320	201826320	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018085.4	+1	validated	p.L407	1.000	238	0%	553	20.8%	4	0%	-	-	-	superfamily_ARM repeat
IPO9	55705	genome.wustl.edu	37	1	201836028	201836028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018085.4	+1	validated	p.A599V	1.000	238	0%	388	23.5%	24	0%	benign(0.016)	tolerated(0.47)	neutral(0.011)	superfamily_ARM repeat
KLHL12	59349	genome.wustl.edu	37	1	202862411	202862411	+	Silent	SNP	A	A	G	rs140963884	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021633.2	-1	provisional	p.Y512	1.000	232	0%	450	20.9%	23	30.4%	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
PRELP	5549	genome.wustl.edu	37	1	203455914	203455914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002725.3	+1	reviewed	p.L352M	1.000	133	0%	163	22.1%	8	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_LRR_1,superfamily_L domain-like
ATP2B4	493	genome.wustl.edu	37	1	203696673	203696673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001684.3	+1	reviewed	p.R1095W	1.000	187	0%	250	18.8%	8	12.5%	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	NULL
PLEKHA6	22874	genome.wustl.edu	37	1	204198144	204198144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014935.2	-1	validated	p.E891G	1.000	118	0%	147	22.4%	18	22.2%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
PIGR	5284	genome.wustl.edu	37	1	207110970	207110970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002644.3	-1	reviewed	p.Y172C	0.000	122	0%	244	20.5%	379	19.7%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
C4BPA	722	genome.wustl.edu	37	1	207314476	207314476	+	Silent	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000715.3	+1	reviewed	p.A433	0.075	459	0.2%	904	20.4%	18	33.3%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR2	1380	genome.wustl.edu	37	1	207643265	207643265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001006658.2	+1	reviewed	p.A348V	0.000	270	0%	380	19.5%	0	-	possibly_damaging(0.49)	tolerated(0.1)	neutral(0.450)	NULL
PLXNA2	5362	genome.wustl.edu	37	1	208272285	208272285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_025179.3	-1	reviewed	p.A546V	1.000	61	0%	77	11.7%	3	0%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat
LOC642587	642587	genome.wustl.edu	37	1	209605601	209605601	+	Silent	SNP	G	G	A	rs186821678	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001104548.1	+1	validated	p.S72	0.004	44	0%	60	30%	3	66.6%	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	215807816	215807816	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_206933.2	-1	reviewed	p.P5094	0.003	181	0%	427	19.2%	0	-	-	-	-	NULL
HLX	3142	genome.wustl.edu	37	1	221055559	221055559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021958.3	+1	validated	p.R276C	1.000	51	0%	79	10.1%	12	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_HOX,superfamily_Homeodomain_like
TLR5	7100	genome.wustl.edu	37	1	223284943	223284943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003268.5	-1	reviewed	p.Q477H	0.021	142	0%	361	21.3%	1	0%	benign(0.008)	tolerated(0.33)	neutral(0.024)	superfamily_SSF52058
ACTA1	58	genome.wustl.edu	37	1	229567379	229567379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001100.3	-1	reviewed	p.P334L	1.000	82	0%	101	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DISC1	27185	genome.wustl.edu	37	1	231935948	231935948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018662.2	+1	reviewed	p.A595V	0.997	270	0%	425	19.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232575035	232575035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020808.3	-1	validated	p.A1284T	0.055	48	0%	68	25%	5	20%	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345768	235345768	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000474953	-1	known	p.W136R	0.998	439	0%	957	19.9%	10	30%	-	-	-	NULL
NID1	4811	genome.wustl.edu	37	1	236157128	236157128	+	Missense_Mutation	SNP	C	C	T	rs34470198	byCluster;byFrequency	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002508.2	-1	reviewed	p.G858R	0.080	42	2.4%	28	28.6%	4	0%	benign(0.007)	tolerated(0.08)	neutral(0.300)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
RYR2	6262	genome.wustl.edu	37	1	237659965	237659965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001035.2	+1	reviewed	p.Y706H	1.000	290	0%	368	14.9%	0	-	probably_damaging(0.981)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
SDCCAG8	10806	genome.wustl.edu	37	1	243493967	243493967	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006642.2	+1	validated	p.T398	0.199	223	0%	456	18.2%	10	20%	-	-	-	NULL
PPPDE1	51029	genome.wustl.edu	37	1	244816653	244816653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016076.3	+1	validated	p.D13G	1.000	29	0%	29	13.8%	3	33.3%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_DUF862
OR2L5	81466	genome.wustl.edu	37	1	248185926	248185926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000355281	+1	known	p.R226H	0.000	255	0%	454	20.9%	0	-	benign(0.006)	tolerated(0.53)	neutral(0.007)	HMMPfam_7tm_1,superfamily_SSF81321
ASAP2	8853	genome.wustl.edu	37	2	9515045	9515045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003887.2	+1	reviewed	p.T573M	0.993	51	0%	81	40.7%	5	60%	benign(0.109)	tolerated(0.52)	neutral(0.017)	superfamily_Ankyrin repeat
SRD5A2	6716	genome.wustl.edu	37	2	31805721	31805722	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000233139	-1	known	p.L82fs	0.975:0.581	-	-	-	-	-	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32735613	32735613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016252.3	+1	reviewed	p.F3420L	1.000	257	0.4%	380	35.3%	3	33.3%	benign(0.009)	tolerated(1)	neutral(0.001)	NULL
ARHGEF33	100271715	genome.wustl.edu	37	2	39171056	39171056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001145451.2	+1	validated	p.V269M	1.000	291	0%	363	32%	0	-	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ERLEC1	27248	genome.wustl.edu	37	2	54026194	54026196	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015701.3	+1	validated	p.E169in_frame_del	1.000:0.999:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PRKCSH
SPTBN1	6711	genome.wustl.edu	37	2	54871643	54871643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003128.2	+1	reviewed	p.H1397Y	0.360	124	0%	114	40.4%	12	16.6%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CCDC88A	55704	genome.wustl.edu	37	2	55559800	55559800	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001135597.1	-1	validated	p.Q919	1.000	507	0%	595	35.6%	0	-	-	-	-	NULL
ZNF638	27332	genome.wustl.edu	37	2	71576789	71576789	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001014972.1	+1	reviewed	p.T235	0.835	146	0%	187	44.4%	1	0%	-	-	-	NULL
BOLA3	388962	genome.wustl.edu	37	2	74369475	74369475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_212552.2	-1	validated	p.A61E	0.999	370	0%	359	34.8%	50	32%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_BolA,superfamily_BolA
DNAH6	1768	genome.wustl.edu	37	2	84846918	84846918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001370.1	+1	validated	p.E1228K	0.998	184	0%	202	41.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DHC_N2
FER1L5	90342	genome.wustl.edu	37	2	97368967	97368967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001113382.1	+1	provisional	p.A1895T	0.000	71	0%	50	44%	0	-	benign(0.002)	tolerated(0.66)	neutral(0.003)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
VWA3B	200403	genome.wustl.edu	37	2	98928687	98928687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_144992.4	+1	provisional	p.A1254T	0.024	129	0%	97	40.2%	1	100%	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147107	113147107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000302558	-1	known	p.G1139S	1.000	363	0%	301	10.3%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
LOC645529	645529	genome.wustl.edu	37	2	114425332	114425332	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	XM_001716670.2	-1	model	p.P264	0.019	109	0%	73	21.9%	5	20%	-	-	-	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	124979383	124979383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_130773.2	+1	reviewed	p.V62F	0.999	227	0%	173	31.2%	0	-	benign(0.067)	tolerated(0.66)	neutral(0.007)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
SAP130	79595	genome.wustl.edu	37	2	128707771	128707771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024545.3	-1	validated	p.K869N	1.000	406	0%	396	35.4%	14	42.8%	benign(0.25)	tolerated(0.06)	neutral(0.348)	NULL
MCM6	4175	genome.wustl.edu	37	2	136624161	136624161	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005915.4	-1	reviewed	p.V251	1.000	104	0%	101	31.7%	2	50%	-	-	-	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
TANC1	85461	genome.wustl.edu	37	2	160085324	160085324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033394.2	+1	validated	p.E1356D	0.998	249	0%	240	39.2%	8	62.5%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
PDE11A	50940	genome.wustl.edu	37	2	178592471	178592471	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000433879	-1	known	p.Q261*	1.000	223	0%	176	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HD-domain/PDEase-like
TTN	7273	genome.wustl.edu	37	2	179499273	179499273	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000356127	-1	known	p.R11511*	0.787	101	0%	79	31.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179571348	179571348	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000356127	-1	known	p.G8507	0.991	230	0%	254	37.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
SSFA2	6744	genome.wustl.edu	37	2	182780935	182780935	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001130445.1	+1	validated	p.R856	0.999	173	0%	172	33.7%	11	45.4%	-	-	-	NULL
ASNSD1	54529	genome.wustl.edu	37	2	190531221	190531222	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_019048.2	+1	validated	p.Y123fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
GTF3C3	9330	genome.wustl.edu	37	2	197654012	197654012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_012086.2	-1	provisional	p.A270V	1.000	271	0%	279	30.8%	3	0%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMSmart_SM00028,superfamily_Protein prenylyltransferase
KCTD18	130535	genome.wustl.edu	37	2	201355264	201355264	+	Silent	SNP	G	G	A	rs188668776	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152387.2	-1	validated	p.G280	1.000	137	0%	114	26.3%	12	50%	-	-	-	NULL
DYTN	391475	genome.wustl.edu	37	2	207564479	207564480	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001093730.1	-1	provisional	p.C231fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
USP37	57695	genome.wustl.edu	37	2	219321841	219321841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020935.2	-1	validated	p.S896N	1.000	176	0%	241	29%	0	-	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases
CCDC140	151278	genome.wustl.edu	37	2	223168904	223168904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_153038.1	+1	validated	p.R95C	0.000	36	0%	23	34.8%	0	-	unknown(0)	-	-	NULL
PID1	55022	genome.wustl.edu	37	2	230127413	230127414	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017933.4	-1	validated	p.P36fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CNTN6	27255	genome.wustl.edu	37	3	1415293	1415293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014461.2	+1	reviewed	p.P598T	1.000	98	1%	123	35.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF48726
FANCD2	2177	genome.wustl.edu	37	3	10107112	10107112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033084.3	+1	reviewed	p.R735W	1.000	408	0%	429	38.5%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRAK2	3656	genome.wustl.edu	37	3	10280496	10280496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001570.3	+1	reviewed	p.S513N	0.009	96	0%	64	25%	4	25%	probably_damaging(0.982)	tolerated(0.21)	deleterious(0.470)	NULL
TMEM40	55287	genome.wustl.edu	37	3	12778132	12778132	+	Silent	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018306.2	-1	provisional	p.G188	0.991	110	0%	83	34.9%	2	100%	-	-	-	NULL
COLQ	8292	genome.wustl.edu	37	3	15540033	15540033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_080538.2	-1	reviewed	p.S21L	0.994	84	0%	72	29.2%	0	-	unknown(0)	deleterious(0)	-	NULL
GALNTL2	117248	genome.wustl.edu	37	3	16252698	16252698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_054110.4	+1	validated	p.D383N	1.000	289	0%	228	38.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53448
CLASP2	23122	genome.wustl.edu	37	3	33668482	33668482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015097.1	-1	validated	p.A345T	1.000	172	0%	238	37.8%	1	100%	possibly_damaging(0.838)	deleterious(0.04)	deleterious(0.669)	superfamily_ARM repeat
TRAK1	22906	genome.wustl.edu	37	3	42264909	42264909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001042646.1	+1	validated	p.R848G	1.000	59	0%	50	44%	16	37.5%	benign(0.164)	deleterious(0.01)	neutral(0.421)	NULL
CDCP1	64866	genome.wustl.edu	37	3	45132842	45132842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022842.3	-1	reviewed	p.M606V	1.000	68	0%	46	15.2%	4	50%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SETD2	29072	genome.wustl.edu	37	3	47164290	47164290	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000445387	-1	known	p.W246R	0.138	65	0%	93	39.8%	1	0%	-	-	-	NULL
RBM5	10181	genome.wustl.edu	37	3	50151505	50151505	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005778.1	+1	provisional	p.D580	1.000	116	0%	166	36.7%	77	49.3%	-	-	-	NULL
ATXN7	6314	genome.wustl.edu	37	3	63981956	63981956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001128149.2	+1	reviewed	p.G820C	0.539	162	0%	173	41%	6	0%	possibly_damaging(0.476)	tolerated(0.11)	neutral(0.428)	NULL
PSMD6	9861	genome.wustl.edu	37	3	64008410	64008410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000492933	-1	known	p.W71*	0.000	19	0.000	8	0.625	3	33.3%	-	-	-	NULL
VGLL3	389136	genome.wustl.edu	37	3	87017961	87017961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016206.2	-1	validated	p.R239H	1.000	186	0%	99	37.4%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
ST3GAL6	10402	genome.wustl.edu	37	3	98507261	98507261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006100.2	+1	provisional	p.A237V	0.982	186	0%	255	36.9%	2	50%	benign(0.056)	tolerated(0.11)	neutral(0.275)	HMMPfam_Glyco_transf_29
GPR128	84873	genome.wustl.edu	37	3	100328734	100328734	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032787.2	+1	validated	p.L12	0.938	408	0%	353	32.3%	0	-	-	-	-	NULL
DTX3L	151636	genome.wustl.edu	37	3	122289371	122289371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_138287.3	+1	validated	p.E669K	1.000	243	0%	310	37.7%	7	28.5%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
KALRN	8997	genome.wustl.edu	37	3	124017733	124017733	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000354186	+1	known	p.S331N	1.000	232	0%	242	38.8%	1	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
UROC1	131669	genome.wustl.edu	37	3	126201222	126201222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_144639.2	-1	reviewed	p.D666G	0.959	29	0%	22	40.9%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
PLXND1	23129	genome.wustl.edu	37	3	129294624	129294624	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015103.2	-1	validated	p.R807	0.977	364	0.3%	248	34.7%	5	0%	-	-	-	NULL
TF	7018	genome.wustl.edu	37	3	133472444	133472444	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000414694	+1	known	p.R103*	0.000	149	0%	154	40.9%	0	-	-	-	-	NULL
MED12L	116931	genome.wustl.edu	37	3	150908683	150908683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_053002.4	+1	reviewed	p.E645K	0.998	135	0%	121	33.9%	0	-	possibly_damaging(0.935)	tolerated(0.68)	neutral(0.383)	NULL
SI	6476	genome.wustl.edu	37	3	164709250	164709250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001041.3	-1	reviewed	p.V1667I	0.000	249	0%	241	36.5%	0	-	benign(0.001)	tolerated(0.97)	-	HMMPfam_Glyco_hydro_31
SERPINI2	5276	genome.wustl.edu	37	3	167189580	167189580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006217.3	-1	reviewed	p.G15R	1.000	198	0%	249	11.6%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_Prot_inh_serpin
FGF12	2257	genome.wustl.edu	37	3	191888254	191888254	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021032.3	-1	reviewed	p.P202	0.979	348	0%	352	38.6%	1	0%	-	-	-	HMMSmart_SM00442,superfamily_Cytokine
KIAA0226	9711	genome.wustl.edu	37	3	197421291	197421291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001145642.2	-1	validated	p.R502S	1.000	340	0.6%	301	37.2%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
LRPAP1	4043	genome.wustl.edu	37	4	3526685	3526685	+	Missense_Mutation	SNP	C	C	T	rs11549511	byCluster;by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002337.2	-1	validated	p.G100S	0.999	183	0.5%	172	32%	96	51%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Alpha-2-MRAP_N,superfamily_MG_RAP_rcpt_1
DHX15	1665	genome.wustl.edu	37	4	24534517	24534517	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001358.2	-1	reviewed	p.R690S	1.000	103	0%	141	34.8%	83	39.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1605
TLR1	7096	genome.wustl.edu	37	4	38799647	38799648	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003263.3	-1	reviewed	p.W269fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_L domain-like,superfamily_Outer arm dynein light chain 1
RFC1	5981	genome.wustl.edu	37	4	39329365	39329365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002913.3	-1	reviewed	p.D115N	1.000	308	0%	392	33.4%	0	-	possibly_damaging(0.951)	tolerated(0.09)	deleterious(0.691)	NULL
CWH43	80157	genome.wustl.edu	37	4	48994066	48994066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_025087.2	+1	validated	p.L157P	0.975	362	0.3%	439	36.4%	4	75%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
REST	5978	genome.wustl.edu	37	4	57798265	57798265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005612.3	+1	reviewed	p.R1081C	1.000	147	0%	168	33.3%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
LIN54	132660	genome.wustl.edu	37	4	83857235	83857235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_194282.2	-1	validated	p.K582E	0.999	288	0%	408	37.3%	3	66.6%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
DSPP	1834	genome.wustl.edu	37	4	88537322	88537322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014208.3	+1	reviewed	p.D1170N	0.953	327	0%	234	19.2%	0	-	unknown(0)	-	-	NULL
INTS12	57117	genome.wustl.edu	37	4	106616710	106616710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001142471.1	-1	validated	p.K91R	0.994	414	0.2%	498	33.9%	8	25%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	NULL
FAT4	79633	genome.wustl.edu	37	4	126242535	126242535	+	Silent	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024582.4	+1	validated	p.R1657	0.413	107	0%	111	39.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FBXW7	55294	genome.wustl.edu	37	4	153332570	153332570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033632.2	-1	reviewed	p.D129A	1.000	478	0%	450	34.7%	1	100%	unknown(0)	deleterious(0)	-	superfamily_WD40 repeat-like
FHDC1	85462	genome.wustl.edu	37	4	153896811	153896811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033393.2	+1	validated	p.D790N	0.308	36	0%	26	23.1%	0	-	benign(0.079)	deleterious(0.04)	neutral(0.354)	NULL
GUCY1B3	2983	genome.wustl.edu	37	4	156725762	156725762	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000857.2	+1	validated	p.H524	1.000	214	0%	224	33.5%	2	0%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
ODZ3	55714	genome.wustl.edu	37	4	183676118	183676118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080477.1	+1	provisional	p.T1533I	1.000	125	0%	150	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ConA_like_lec_gl,superfamily_SSF63829
ODZ3	55714	genome.wustl.edu	37	4	183714241	183714241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080477.1	+1	provisional	p.T2140fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RHS_repeat
STOX2	56977	genome.wustl.edu	37	4	184828077	184828077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020225.1	+1	provisional	p.A45V	0.999	43	0%	16	31.2%	0	-	benign(0.006)	tolerated(0.4)	neutral(0.016)	NULL
FAT1	2195	genome.wustl.edu	37	4	187539907	187539907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005245.3	-1	reviewed	p.K2611N	0.990	107	0%	120	36.7%	2	50%	benign(0.11)	tolerated(0.2)	neutral(0.058)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
TRIML1	339976	genome.wustl.edu	37	4	189060958	189060958	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_178556.3	+1	provisional	p.R82	0.000	55	0%	33	51.5%	0	-	-	-	-	superfamily_SSF57850
SLC9A3	6550	genome.wustl.edu	37	5	488552	488552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004174.2	-1	validated	p.G185D	1.000	28	0%	14	42.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_H_Exchanger
ANKH	56172	genome.wustl.edu	37	5	14749300	14749300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_054027.4	-1	reviewed	p.G268D	1.000	115	0%	71	32.4%	6	16.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_ANKH
CDH18	1016	genome.wustl.edu	37	5	19483593	19483593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004934.3	-1	reviewed	p.P567S	1.000	171	0%	178	36.5%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
HCN1	348980	genome.wustl.edu	37	5	45353305	45353305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021072.2	-1	validated	p.A425V	1.000	383	0%	401	37.2%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_cNMP_binding
DDX4	54514	genome.wustl.edu	37	5	55088515	55088515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024415.2	+1	validated	p.R450H	1.000	179	0%	221	40.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_DEAD_ATP_HELICASE,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HTR1A	3350	genome.wustl.edu	37	5	63257144	63257144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000524.2	-1	validated	p.Y135H	1.000	69	1.4%	56	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
PIK3R1	5295	genome.wustl.edu	37	5	67591145	67591153	+	Frame_Shift_Del	DEL	TACTTGATG	TACTTGATG	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	TACTTGATG	TACTTGATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_181523.1	+1	reviewed	p.Y580fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79095242	79095242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_153610.3	+1	validated	p.R4005C	0.734	270	0%	334	38.6%	10	70%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SPRY
ACOT12	134526	genome.wustl.edu	37	5	80639995	80639995	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_130767.2	-1	validated	p.R322*	1.000	156	0%	202	37.6%	0	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82837066	82837066	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004385.4	+1	reviewed	p.Q2748	0.724	53	0%	85	34.1%	1	0%	-	-	-	NULL
ZRSR1	7310	genome.wustl.edu	37	5	112228169	112228169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000391338	+1	known	p.Q278R	1.000	384	0%	471	38.6%	21	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_RRM,superfamily_SSF54928
PRRC1	133619	genome.wustl.edu	37	5	126887453	126887453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_130809.3	+1	validated	p.T395A	1.000	187	0%	201	39.3%	29	37.9%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_Maf/Ham1
SLC12A2	6558	genome.wustl.edu	37	5	127469920	127469920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001046.2	+1	validated	p.V418M	1.000	441	0%	592	40.2%	0	-	possibly_damaging(0.7)	deleterious(0.01)	deleterious(0.657)	HMMPfam_AA_permease
LECT2	3950	genome.wustl.edu	37	5	135290486	135290486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002302.2	-1	reviewed	p.I13F	0.980	172	0%	239	32.2%	0	-	possibly_damaging(0.819)	tolerated(0.05)	deleterious(0.655)	NULL
SLC35A4	113829	genome.wustl.edu	37	5	139946759	139946759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_080670.2	+1	provisional	p.S2N	0.992	60	0%	30	30%	24	54.1%	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140167916	140167916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018900.2	+1	reviewed	p.R681W	0.002	39	0%	25	64%	0	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
PCDHGA11	56105	genome.wustl.edu	37	5	140802417	140802417	+	Silent	SNP	G	G	A	rs184432819	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018914.2	+1	reviewed	p.P541	0.371	98	0%	79	32.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GRXCR2	643226	genome.wustl.edu	37	5	145246177	145246177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080516.1	-1	provisional	p.E151K	0.011	396	0%	451	34.6%	0	-	benign(0.071)	tolerated(0.35)	neutral(0.026)	NULL
RMND5B	64777	genome.wustl.edu	37	5	177565138	177565138	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022762.3	+1	provisional	p.C6*	0.897	79	0%	54	29.6%	6	16.6%	-	-	-	NULL
C5orf60	285679	genome.wustl.edu	37	5	179070006	179070006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001142306.1	-1	provisional	p.V183I	0.001	222	0%	139	43.9%	0	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	NULL
GFPT2	9945	genome.wustl.edu	37	5	179757797	179757797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005110.2	-1	provisional	p.T146I	1.000	571	0%	503	30.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATase_2,superfamily_SSF56235
DSP	1832	genome.wustl.edu	37	6	7580229	7580229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004415.2	+1	reviewed	p.R1269Q	1.000	42	0%	35	42.9%	2	100%	possibly_damaging(0.793)	deleterious(0.03)	deleterious(0.662)	NULL
GFOD1	54438	genome.wustl.edu	37	6	13365147	13365147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018988.2	-1	provisional	p.A334V	1.000	18	0%	15	33.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25551203	25551203	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017640.5	+1	validated	p.H798	1.000	382	0%	327	39.1%	2	0%	-	-	-	NULL
BTN2A2	10385	genome.wustl.edu	37	6	26392810	26392810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006995.3	+1	reviewed	p.V396A	0.847	460	0%	360	32.5%	1	0%	possibly_damaging(0.806)	deleterious(0.01)	deleterious(0.709)	HMMPfam_SPRY,HMMSmart_SM00449
KIFC1	3833	genome.wustl.edu	37	6	33373158	33373158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002263.3	+1	validated	p.Q429R	0.973	62	0%	39	30.8%	24	50%	probably_damaging(0.983)	tolerated(0.33)	neutral(0.453)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
BRPF3	27154	genome.wustl.edu	37	6	36181952	36181952	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015695.2	+1	validated	p.R926	0.990	72	0%	48	29.2%	2	50%	-	-	-	NULL
CRISP3	10321	genome.wustl.edu	37	6	49701491	49701491	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006061.1	-1	provisional	p.W116*	0.705	292	0%	278	39.2%	0	-	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
TFAP2B	7021	genome.wustl.edu	37	6	50791173	50791173	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003221.3	+1	reviewed	p.S45	0.753	65	1.5%	27	40.7%	3	0%	-	-	-	NULL
BAG2	9532	genome.wustl.edu	37	6	57048723	57048723	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004282.3	+1	reviewed	p.F124C	1.000	276	0%	290	38.3%	21	52.3%	possibly_damaging(0.44)	deleterious(0.02)	deleterious(0.526)	HMMPfam_BAG,HMMSmart_BAG
MYO6	4646	genome.wustl.edu	37	6	76564910	76564910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004999.3	+1	reviewed	p.L378S	1.000	281	0%	331	33.2%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90387363	90387363	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014611.1	-1	provisional	p.E4155	0.943	439	0%	351	35.9%	4	0%	-	-	-	NULL
AKD1	221264	genome.wustl.edu	37	6	109996911	109996911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001145128.2	-1	provisional	p.A13V	0.145	208	0%	246	34.6%	0	-	benign(0.032)	tolerated(0.17)	neutral(0.060)	NULL
REV3L	5980	genome.wustl.edu	37	6	111696316	111696316	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002912.3	-1	validated	p.S1081*	0.863	299	0%	428	32.9%	0	-	-	-	-	superfamily_Ribonuclease H-like
DSE	29940	genome.wustl.edu	37	6	116747869	116747869	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080976.1	+1	reviewed	p.N183	0.999	133	0%	164	29.3%	1	100%	-	-	-	NULL
EPB41L2	2037	genome.wustl.edu	37	6	131215508	131215509	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001431.3	-1	validated	p.C488fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_FERM_C,superfamily_SSF50729
KIAA1244	57221	genome.wustl.edu	37	6	138638433	138638433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020340.4	+1	validated	p.A1464V	1.000	295	0%	295	41%	1	0%	possibly_damaging(0.822)	deleterious(0.04)	deleterious(0.660)	NULL
SUN1	23353	genome.wustl.edu	37	7	912892	912892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001130965.2	+1	reviewed	p.R761Q	1.000	398	0%	412	32.5%	27	29.6%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Sad1_UNC
EIF3B	8662	genome.wustl.edu	37	7	2400400	2400400	+	Silent	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001037283.1	+1	validated	p.S185	0.042	161	0%	174	38.5%	28	39.2%	-	-	-	superfamily_RNA-binding domain RBD
SLC29A4	222962	genome.wustl.edu	37	7	5336640	5336640	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001040661.1	+1	reviewed	p.T231	0.520	4	0.000	5	0.800	1	0%	-	-	-	HMMPfam_Nucleoside_tran,superfamily_MFS general substrate transporter
TNRC18	84629	genome.wustl.edu	37	7	5396613	5396613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080495.2	-1	provisional	p.K1710Q	1.000	176	0.6%	101	35.6%	23	65.2%	possibly_damaging(0.847)	tolerated(0.26)	neutral(0.359)	NULL
ZDHHC4	55146	genome.wustl.edu	37	7	6621265	6621265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001134387.1	+1	validated	p.L49F	0.997	514	0%	724	34.5%	26	53.8%	benign(0.122)	tolerated(0.08)	neutral(0.310)	NULL
SNX13	23161	genome.wustl.edu	37	7	17836527	17836527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015132.4	-1	reviewed	p.A850V	0.999	453	0%	410	38.3%	4	50%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Nexin_C
CHN2	1124	genome.wustl.edu	37	7	29552333	29552333	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004067.2	+1	reviewed	p.N463	0.851	201	0%	208	30.8%	1	0%	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
BBS9	27241	genome.wustl.edu	37	7	33217164	33217164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_198428.2	+1	reviewed	p.A135T	1.000	329	0.3%	437	33%	0	-	possibly_damaging(0.852)	deleterious(0.04)	deleterious(0.676)	NULL
GLI3	2737	genome.wustl.edu	37	7	42004734	42004734	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000168.5	-1	reviewed	p.Q1313*	0.008	26	0%	23	47.8%	0	-	-	-	-	NULL
DBNL	28988	genome.wustl.edu	37	7	44092471	44092471	+	Silent	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001122956.1	+1	validated	p.G86	0.660	86	0%	57	22.8%	22	31.8%	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753
OGDH	4967	genome.wustl.edu	37	7	44687269	44687269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002541.3	+1	reviewed	p.H143R	1.000	225	0%	220	31.8%	4	25%	benign(0)	tolerated(0.41)	neutral(0.015)	superfamily_SSF52518
ABCA13	154664	genome.wustl.edu	37	7	48428763	48428763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152701.3	+1	reviewed	p.R3867I	0.498	83	0%	78	35.9%	0	-	benign(0.163)	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRB10	2887	genome.wustl.edu	37	7	50674041	50674041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005311.4	-1	reviewed	p.T422M	0.455	133	0%	99	31.3%	13	69.2%	possibly_damaging(0.811)	tolerated(0.08)	deleterious(0.605)	NULL
RABGEF1	27342	genome.wustl.edu	37	7	66273875	66273875	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014504.2	+1	validated	p.C360	1.000	220	0%	253	37.5%	10	60%	-	-	-	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993
POM121	9883	genome.wustl.edu	37	7	72414058	72414058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_172020.1	+1	reviewed	p.G911R	1.000	105	0%	93	26.9%	7	14.2%	unknown(0)	tolerated(0.16)	-	NULL
NSUN5P2	260294	genome.wustl.edu	37	7	72419244	72419244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000330999	-1	known	p.F233L	1.000	253	0%	182	30.2%	32	12.5%	-	-	-	HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AKAP9	10142	genome.wustl.edu	37	7	91707017	91707017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005751.4	+1	reviewed	p.M2258K	1.000	203	0%	292	43.5%	1	0%	possibly_damaging(0.812)	tolerated(0.27)	neutral(0.339)	NULL
ANKIB1	54467	genome.wustl.edu	37	7	91972427	91972427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_019004.1	+1	validated	p.P293S	1.000	305	0%	342	33.3%	0	-	benign(0.114)	deleterious(0.03)	neutral(0.373)	superfamily_ANK
COL1A2	1278	genome.wustl.edu	37	7	94048853	94048853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000089.3	+1	reviewed	p.T690K	0.978	502	0%	494	39.1%	117	0.8%	unknown(0)	tolerated(0.3)	-	NULL
NPTX2	4885	genome.wustl.edu	37	7	98257798	98257798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002523.2	+1	reviewed	p.A385T	0.915	128	0%	92	32.6%	1	100%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
MUC12	10071	genome.wustl.edu	37	7	100634091	100634091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000379442	+1	known	p.V226I	0.002	354	0%	441	40.4%	0	-	benign(0.29)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100648379	100648379	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000379442	+1	known	p.G4988	0.000	351	0%	340	32.4%	1	0%	-	-	-	NULL
CLDN15	24146	genome.wustl.edu	37	7	100877592	100877592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014343.2	-1	reviewed	p.A117S	0.989	23	0%	12	41.7%	5	20%	benign(0.008)	deleterious(0.05)	neutral(0.345)	HMMPfam_PMP22_Claudin
CUX1	1523	genome.wustl.edu	37	7	101840033	101840033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_181552.2	+1	reviewed	p.T448A	1.000	44	0%	39	25.6%	1	0%	possibly_damaging(0.787)	tolerated(0.89)	neutral(0.294)	NULL
ALKBH4	54784	genome.wustl.edu	37	7	102100199	102100199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017621.2	-1	provisional	p.T58K	0.102	51	0%	31	45.2%	6	50%	benign(0.006)	tolerated(0.84)	neutral(0.001)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120655844	120655844	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024913.4	+1	validated	p.T125	0.000	89	1.1%	106	34%	0	-	-	-	-	NULL
WNT16	51384	genome.wustl.edu	37	7	120969732	120969732	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_057168.1	+1	reviewed	p.S69	1.000	42	0%	24	45.8%	0	-	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
RNF148	378925	genome.wustl.edu	37	7	122342250	122342250	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_198085.1	-1	validated	p.Q185	0.003	135	0%	120	16.7%	0	-	-	-	-	superfamily_SSF52025
SPAM1	6677	genome.wustl.edu	37	7	123600010	123600010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_153189.2	+1	reviewed	p.V506A	0.000	174	0%	113	15%	0	-	unknown(0)	deleterious(0)	-	NULL
KIAA1549	57670	genome.wustl.edu	37	7	138529082	138529082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020910.2	-1	validated	p.R1761Q	1.000	53	0%	36	63.9%	1	0%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
TAS2R3	50831	genome.wustl.edu	37	7	141464848	141464848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016943.2	+1	reviewed	p.V297A	0.000	162	0%	195	33.8%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
INTS10	55174	genome.wustl.edu	37	8	19677916	19677916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018142.2	+1	validated	p.V110F	0.975	303	0%	355	36.1%	10	30%	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	NULL
TRIM35	23087	genome.wustl.edu	37	8	27145295	27145295	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_171982.3	-1	validated	p.S418	0.001	26	0.000	9	0.444	3	66.6%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
SCARA5	286133	genome.wustl.edu	37	8	27779094	27779094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_173833.4	-1	provisional	p.A304T	0.295	27	0%	15	60%	0	-	benign(0.323)	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41526061	41526061	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001142446.1	-1	reviewed	p.D1747	0.369	95	1.1%	66	30.3%	1	0%	-	-	-	NULL
PLAT	5327	genome.wustl.edu	37	8	42037773	42037773	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000930.3	-1	reviewed	p.Y403	0.010	202	0%	184	29.9%	17	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ENSG00000235531	0	genome.wustl.edu	37	8	72965926	72965926	+	RNA	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000457356	+1	known	NULL	0.000	91	0%	77	27.3%	0	-	-	-	-	-
CA3	761	genome.wustl.edu	37	8	86360276	86360276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005181.3	+1	reviewed	p.R226L	1.000	56	0%	48	43.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
VPS13B	157680	genome.wustl.edu	37	8	100287478	100287478	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017890.3	+1	reviewed	p.N940	0.927	145	0%	181	34.8%	0	-	-	-	-	NULL
RGS22	26166	genome.wustl.edu	37	8	101092471	101092471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015668.3	-1	validated	p.P77H	1.000	340	0%	488	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNX31	169166	genome.wustl.edu	37	8	101624297	101624297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152628.3	-1	validated	p.D181V	0.988	307	0%	361	33.8%	0	-	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133141814	133141814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004519.2	-1	reviewed	p.D772N	0.258	65	0%	41	36.6%	1	0%	benign(0.079)	deleterious(0.02)	neutral(0.389)	NULL
WISP1	8840	genome.wustl.edu	37	8	134225306	134225306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003882.2	+1	reviewed	p.A90G	0.998	33	0%	22	36.4%	1	100%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	HMMPfam_IGFBP,HMMSmart_SM00121
EPPK1	83481	genome.wustl.edu	37	8	144945810	144945810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_031308.1	-1	validated	p.V538M	0.000	12	0%	19	31.6%	1	0%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	NULL
PLEC	5339	genome.wustl.edu	37	8	145005756	145005756	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_201380.2	-1	reviewed	p.S887	0.891	64	0%	40	40%	4	0%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SMARCA2	6595	genome.wustl.edu	37	9	2161875	2161875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003070.3	+1	reviewed	p.I1391V	1.000	124	0.8%	137	25.5%	20	45%	benign(0)	tolerated(0.89)	-	HMMSmart_SM00297,superfamily_Bromodomain
KIAA2026	158358	genome.wustl.edu	37	9	5919925	5919925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001017969.2	-1	validated	p.C2024Y	0.345	265	0%	282	14.5%	17	35.2%	benign(0.006)	tolerated(0.24)	neutral(0.037)	NULL
MPDZ	8777	genome.wustl.edu	37	9	13119573	13119573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000437441	-1	known	p.R217G	0.999	281	0%	326	36.8%	5	20%	-	-	-	HMMSmart_SM00228
TTC39B	158219	genome.wustl.edu	37	9	15185349	15185349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152574.2	-1	validated	p.F449L	1.000	113	0%	84	31%	2	50%	probably_damaging(0.993)	deleterious(0.05)	deleterious(0.795)	HMMPfam_Deme6,superfamily_TPR-like
IFNA8	3445	genome.wustl.edu	37	9	21409203	21409203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002170.3	+1	validated	p.A10T	0.691	275	0.4%	230	36.1%	0	-	benign(0.03)	deleterious(0.03)	neutral(0.366)	HMMPfam_Interferon
GALT	2592	genome.wustl.edu	37	9	34648368	34648368	+	Missense_Mutation	SNP	G	G	A	rs111033735		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000155.2	+1	reviewed	p.R201H	0.997	141	0%	122	46.7%	21	19%	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	superfamily_HIT-like
UNC13B	10497	genome.wustl.edu	37	9	35376148	35376148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006377.3	+1	reviewed	p.L498F	1.000	139	0%	133	34.6%	1	100%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
RUSC2	9853	genome.wustl.edu	37	9	35556389	35556389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001135999.1	+1	validated	p.C976Y	1.000	146	0%	131	45%	3	66.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
CNTNAP3	79937	genome.wustl.edu	37	9	39085805	39085805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033655.3	-1	reviewed	p.K1124Q	0.751	462	0%	533	33.4%	0	-	benign(0.095)	tolerated(0.57)	neutral(0.013)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
PGM5	5239	genome.wustl.edu	37	9	71007332	71007332	+	Missense_Mutation	SNP	G	G	A	rs2491891		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021965.3	+1	validated	p.R329H	1.000	283	0%	173	8.7%	0	-	possibly_damaging(0.64)	deleterious(0.01)	deleterious(0.630)	HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase first 3 domains
TRPM3	80036	genome.wustl.edu	37	9	73426150	73426150	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_206946.3	-1	reviewed	p.P175	1.000	275	0%	325	34.5%	0	-	-	-	-	NULL
ALDH1A1	216	genome.wustl.edu	37	9	75567907	75567907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000689.3	-1	reviewed	p.S4A	0.012	246	0%	198	31.3%	2	0%	benign(0.028)	tolerated(0.5)	neutral(0.011)	superfamily_ALDH-like
TLE4	7091	genome.wustl.edu	37	9	82334975	82334975	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007005.3	+1	validated	p.Y535	1.000	141	0%	171	41.5%	2	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SECISBP2	79048	genome.wustl.edu	37	9	91934606	91934606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024077.3	+1	reviewed	p.R26G	1.000	355	0%	353	32.6%	0	-	possibly_damaging(0.655)	deleterious(0.01)	deleterious(0.636)	NULL
WNK2	65268	genome.wustl.edu	37	9	96026309	96026309	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000432730	+1	known	p.R1226H	0.115	146	0%	97	32%	5	20%	-	-	-	NULL
INVS	27130	genome.wustl.edu	37	9	102988359	102988359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014425.2	+1	reviewed	p.M97V	1.000	93	0%	131	22.1%	4	50%	benign(0.004)	tolerated(1)	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RNF20	56254	genome.wustl.edu	37	9	104314675	104314675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_019592.5	+1	reviewed	p.R514H	1.000	110	0%	105	40%	13	46.1%	unknown(0)	deleterious(0.03)	-	NULL
OR13D1	286365	genome.wustl.edu	37	9	107457497	107457500	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	AAGA	AAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001004484.1	+1	provisional	p.K268fs	0.007:0.009:0.025:0.081	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NEK6	10783	genome.wustl.edu	37	9	127074815	127074815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001145001.2	+1	reviewed	p.C74R	1.000	78	0%	55	34.5%	22	40.9%	benign(0.059)	tolerated(0.37)	neutral(0.023)	superfamily_Protein kinase-like (PK-like)
ANGPTL2	23452	genome.wustl.edu	37	9	129854027	129854027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_012098.2	-1	reviewed	p.G402S	1.000	105	0%	81	33.3%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
ANGPTL2	23452	genome.wustl.edu	37	9	129870657	129870657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_012098.2	-1	reviewed	p.S118	0.853	35	0%	26	50%	7	0%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135221699	135221699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015046.5	-1	reviewed	p.P113S	1.000	312	0%	424	16.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM8C	389827	genome.wustl.edu	37	9	136379868	136379868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080483.2	-1	validated	p.A186T	0.997	129	0%	88	37.5%	0	-	benign(0.06)	tolerated(0.07)	neutral(0.323)	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139287148	139287148	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003086.2	-1	validated	p.A238	0.000	88	0%	64	35.9%	3	33.3%	-	-	-	HMMSmart_SANT
C9orf163	158055	genome.wustl.edu	37	9	139379396	139379396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152571.2	+1	validated	p.R166G	0.000	130	0%	64	20.3%	0	-	unknown(0)	-	-	NULL
FAM157B	100132403	genome.wustl.edu	37	9	141109864	141109864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001145249.1	+1	inferred	p.F165L	0.000	232	0%	178	36%	0	-	-	-	-	NULL
DIP2C	22982	genome.wustl.edu	37	10	373085	373085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014974.2	-1	reviewed	p.T1262I	1.000	59	0%	37	43.2%	0	-	benign(0.157)	deleterious(0.02)	neutral(0.397)	HMMPfam_AMP-binding,superfamily_SSF56801
FAM208B	54906	genome.wustl.edu	37	10	5791121	5791121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017782.4	+1	validated	p.V1913I	0.006	41	0%	59	39%	9	55.5%	benign(0.009)	tolerated(1)	neutral(0.001)	NULL
PFKFB3	5209	genome.wustl.edu	37	10	6263658	6263658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004566.3	+1	validated	p.Y345H	1.000	30	0%	19	68.4%	9	33.3%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
SFMBT2	57713	genome.wustl.edu	37	10	7409769	7409769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001029880.1	-1	provisional	p.V93A	1.000	116	0%	83	20.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
ARHGAP21	57584	genome.wustl.edu	37	10	24908930	24908930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020824.3	-1	validated	p.H632Y	0.082	312	0%	318	30.2%	4	25%	benign(0)	tolerated(1)	-	NULL
MYO3A	53904	genome.wustl.edu	37	10	26465739	26465739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017433.4	+1	reviewed	p.I1468T	0.059	172	0%	200	45.5%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
MASTL	84930	genome.wustl.edu	37	10	27450076	27450076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032844.3	+1	reviewed	p.T173M	1.000	279	0%	341	38.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
RAB18	22931	genome.wustl.edu	37	10	27821453	27821453	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000423465	+1	known	p.E181*	0.822	342	0%	439	31.7%	24	33.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC645954	645954	genome.wustl.edu	37	10	30984931	30984931	+	RNA	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	XR_017086.3	+1	model	NULL	1.000	140	0%	100	38%	1	0%	-	-	-	-
RET	5979	genome.wustl.edu	37	10	43606743	43606743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020975.4	+1	reviewed	p.T451M	0.006	98	0%	64	32.8%	9	22.2%	benign(0.416)	deleterious(0)	deleterious(0.579)	NULL
SYT15	83849	genome.wustl.edu	37	10	46968705	46968705	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_031912.3	-1	reviewed	p.F77	0.260	109	0%	66	15.2%	0	-	-	-	-	NULL
GPRIN2	9721	genome.wustl.edu	37	10	47000212	47000212	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014696.3	+1	validated	p.L444	0.891	53	0%	27	22.2%	0	-	-	-	-	NULL
TMEM26	219623	genome.wustl.edu	37	10	63188801	63188801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_178505.6	-1	validated	p.L163P	0.983	237	0%	168	37.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tmem26
C10orf105	414152	genome.wustl.edu	37	10	73476025	73476025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000441508	-1	known	p.V24I	0.001	94	0%	62	53.2%	0	-	benign(0.007)	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73553090	73553090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022124.5	+1	reviewed	p.E2135D	1.000	35	0%	39	28.2%	0	-	probably_damaging(0.992)	tolerated(0.47)	neutral(0.459)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TSPAN14	81619	genome.wustl.edu	37	10	82276053	82276053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_030927.2	+1	validated	p.V239I	0.990	74	0%	60	36.7%	27	51.8%	benign(0.002)	tolerated(0.54)	neutral(0.007)	HMMPfam_Tetraspannin
PTEN	5728	genome.wustl.edu	37	10	89692953	89692953	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000371953	+1	known	p.L146*	1.000	206	0%	270	36.7%	29	3.4%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
O3FAR1	338557	genome.wustl.edu	37	10	95347178	95347178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_181745.2	+1	validated	p.P316S	1.000	479	0%	459	32.7%	2	0%	possibly_damaging(0.858)	tolerated(0.81)	neutral(0.332)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TBC1D12	23232	genome.wustl.edu	37	10	96234437	96234437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015188.1	+1	validated	p.R370*	1.000	221	0%	299	22.4%	0	-	-	-	-	NULL
CC2D2B	387707	genome.wustl.edu	37	10	97775979	97775979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001001732.3	+1	validated	p.G144R	1.000	296	0%	324	32.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NFKB2	4791	genome.wustl.edu	37	10	104158597	104158597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001077494.1	+1	validated	p.G365R	1.000	33	0%	19	63.2%	21	47.6%	benign(0.002)	tolerated(0.54)	neutral(0.007)	NULL
PDCD11	22984	genome.wustl.edu	37	10	105205262	105205262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014976.1	+1	validated	p.A1858T	1.000	145	0%	144	37.5%	41	34.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITPRIP	85450	genome.wustl.edu	37	10	106074997	106074997	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033397.2	-1	provisional	p.H271	0.301	37	0%	29	27.6%	0	-	-	-	-	NULL
NHLRC2	374354	genome.wustl.edu	37	10	115668135	115668135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_198514.2	+1	provisional	p.L674S	0.084	228	0%	270	40.4%	4	25%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
ENSG00000222588	0	genome.wustl.edu	37	10	120820505	120820505	+	RNA	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000410656	-1	novel	NULL	1.000	8	0.000	16	0.562	0	-	-	-	-	-
CTBP2	1488	genome.wustl.edu	37	10	126716053	126716053	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022802.2	-1	reviewed	p.Y92	0.998	45	0%	24	45.8%	0	-	-	-	-	NULL
SIGIRR	59307	genome.wustl.edu	37	11	408744	408744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001135053.1	-1	validated	p.G53W	0.983	44	0%	30	30%	55	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
TNNT3	7140	genome.wustl.edu	37	11	1959704	1959704	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006757.3	+1	reviewed	p.V253	1.000	45	0%	27	40.7%	0	-	-	-	-	NULL
TSPAN32	10077	genome.wustl.edu	37	11	2338609	2338609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_139022.2	+1	reviewed	p.L252S	0.154	114	0%	91	34.1%	1	0%	benign(0.027)	deleterious(0.03)	neutral(0.366)	NULL
CHRNA10	57053	genome.wustl.edu	37	11	3690539	3690539	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020402.2	-1	provisional	p.R83	1.000	111	0%	97	27.8%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
RHOG	391	genome.wustl.edu	37	11	3849260	3849260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001665.3	-1	validated	p.F37L	1.000	68	0%	92	26.1%	43	32.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR56A1	120796	genome.wustl.edu	37	11	6048134	6048134	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001001917.2	-1	validated	p.L267	0.001	144	0%	132	40.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
USP47	55031	genome.wustl.edu	37	11	11906129	11906129	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017944.3	+1	validated	e2+2	1.000	99	0%	136	29.4%	16	100%	-	-	-	-
USP47	55031	genome.wustl.edu	37	11	11969622	11969622	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017944.3	+1	validated	p.S1006fs	1.000	-	-	-	-	-	-	-	-	-	NULL
NAV2	89797	genome.wustl.edu	37	11	19970342	19970342	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_182964.5	+1	validated	p.Q787	1.000	48	0%	43	34.9%	0	-	-	-	-	NULL
OR5M11	219487	genome.wustl.edu	37	11	56310329	56310329	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001005245.1	-1	provisional	p.T135	0.997	111	0%	120	38.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510890	56510890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001005284.1	-1	provisional	p.M133T	1.000	81	0%	80	16.3%	0	-	possibly_damaging(0.667)	deleterious(0.01)	deleterious(0.641)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
TRMT112	51504	genome.wustl.edu	37	11	64084574	64084574	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016404.1	-1	provisional	p.E76*	0.150	176	0%	82	36.6%	635	30.7%	-	-	-	HMMPfam_Trm112p
SCYL1	57410	genome.wustl.edu	37	11	65304124	65304124	+	Silent	SNP	C	C	A	rs56296579	byCluster;byFrequency;by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020680.3	+1	reviewed	p.A573	0.567	170	0%	109	18.3%	85	28.2%	-	-	-	superfamily_ARM repeat
AP5B1	91056	genome.wustl.edu	37	11	65546878	65546878	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_138368.3	-1	validated	p.P305	0.000	17	0%	10	40%	6	50%	-	-	-	NULL
SF3B2	10992	genome.wustl.edu	37	11	65830574	65830574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006842.2	+1	reviewed	p.A691V	1.000	348	0%	322	32%	137	42.3%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
INPPL1	3636	genome.wustl.edu	37	11	71940583	71940583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001567.3	+1	reviewed	p.T245N	0.999	120	0%	124	37.1%	19	36.8%	benign(0.075)	deleterious(0.01)	neutral(0.411)	NULL
CLPB	81570	genome.wustl.edu	37	11	72084036	72084036	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_030813.3	-1	provisional	p.S223	0.999	106	0.9%	72	41.7%	0	-	unknown(0)	-	-	superfamily_Ankyrin repeat
RPS3	6188	genome.wustl.edu	37	11	75115793	75115793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001005.3	+1	reviewed	p.D206N	1.000	141	0%	120	31.7%	6307	45.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DLG2	1740	genome.wustl.edu	37	11	83252789	83252789	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001142699.1	-1	reviewed	p.Q685*	1.000	126	0%	122	41.8%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
KIAA1377	57562	genome.wustl.edu	37	11	101833784	101833784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020802.2	+1	validated	p.I673T	0.000	76	0%	93	31.2%	0	-	benign(0.323)	tolerated(0.06)	neutral(0.423)	NULL
YAP1	10413	genome.wustl.edu	37	11	102080261	102080261	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001130145.1	+1	reviewed	p.I333N	1.000	388	0%	507	37.9%	5	20%	benign(0.132)	deleterious(0)	neutral(0.456)	NULL
LOC100132686	100132686	genome.wustl.edu	37	11	112131411	112131411	+	RNA	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	XR_078450.1	+1	model	NULL	1.000	46	0%	29	34.5%	0	-	-	-	-	-
NLRX1	79671	genome.wustl.edu	37	11	119045752	119045752	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024618.2	+1	reviewed	p.P480	0.146	64	0%	62	32.3%	6	16.6%	-	-	-	NULL
ROBO3	64221	genome.wustl.edu	37	11	124745853	124745853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022370.3	+1	reviewed	p.W809R	1.000	64	0%	38	39.5%	0	-	possibly_damaging(0.787)	deleterious(0.03)	deleterious(0.659)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ROBO4	54538	genome.wustl.edu	37	11	124766464	124766464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_019055.5	-1	validated	p.T168I	0.458	62	0%	43	51.2%	4	0%	benign(0.014)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RPUSD4	84881	genome.wustl.edu	37	11	126080787	126080787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032795.2	-1	validated	p.H118R	1.000	122	0%	85	23.5%	9	11.1%	possibly_damaging(0.546)	tolerated(0.24)	neutral(0.223)	HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom
WNK1	65125	genome.wustl.edu	37	12	1005416	1005416	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018979.3	+1	reviewed	p.V1921	0.869	164	0%	184	41.3%	13	15.3%	-	-	-	NULL
LEPREL2	10536	genome.wustl.edu	37	12	6946611	6946611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000290510	+1	known	p.S528G	0.404	50	0%	25	28%	5	40%	benign(0.025)	tolerated(0.48)	neutral(0.011)	HMMSmart_SM00702
AEBP2	121536	genome.wustl.edu	37	12	19615572	19615572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001114176.1	+1	validated	p.Q267R	1.000	443	0%	502	31.5%	4	25%	possibly_damaging(0.435)	tolerated(0.42)	neutral(0.156)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033360.2	-1	reviewed	p.G12D	1.000	323	0%	381	40.2%	4	25%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
DENND5B	160518	genome.wustl.edu	37	12	31577615	31577615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_144973.3	-1	validated	p.R749C	1.000	390	0%	389	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C12orf35	55196	genome.wustl.edu	37	12	32138573	32138573	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018169.3	+1	validated	p.S1562R	0.002	169	0%	228	29.4%	23	52.1%	possibly_damaging(0.846)	tolerated(0.26)	neutral(0.359)	NULL
PFKM	5213	genome.wustl.edu	37	12	48534624	48534624	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000289.5	+1	reviewed	p.H437	0.992	136	0%	98	37.8%	1	0%	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase
MLL2	8085	genome.wustl.edu	37	12	49438067	49438067	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003482.3	-1	validated	p.R1702*	1.000	112	0%	106	40.6%	1	0%	-	-	-	NULL
FMNL3	91010	genome.wustl.edu	37	12	50050228	50050228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_175736.4	-1	validated	p.G282C	1.000	138	0%	137	34.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Drf_FH3
LIMA1	51474	genome.wustl.edu	37	12	50616128	50616128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001113546.1	-1	validated	p.D102E	0.950	177	0.6%	187	28.9%	7	0%	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
KRT75	9119	genome.wustl.edu	37	12	52822456	52822456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004693.2	-1	reviewed	p.E369D	0.498	445	0%	417	33.8%	0	-	possibly_damaging(0.536)	tolerated(0.14)	neutral(0.430)	superfamily_Prefoldin,HMMPfam_Filament
KIAA0748	9840	genome.wustl.edu	37	12	55356889	55356889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001098815.1	-1	validated	p.P265S	0.999	186	0%	201	28.9%	4	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
RNF41	10193	genome.wustl.edu	37	12	56601490	56601490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005785.2	-1	reviewed	p.R181L	1.000	421	0%	492	42.9%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_USP8_interact
CNPY2	10330	genome.wustl.edu	37	12	56705098	56705098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014255.4	-1	validated	p.R102H	1.000	300	0%	334	38%	264	38.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
AGAP2	116986	genome.wustl.edu	37	12	58131221	58131221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001122772.1	-1	validated	p.K270R	1.000	60	0%	50	42%	1	0%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
BEST3	144453	genome.wustl.edu	37	12	70066683	70066683	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032735.2	-1	validated	p.C310	1.000	453	0%	551	37.6%	0	-	-	-	-	HMMPfam_Bestrophin
MGAT4C	25834	genome.wustl.edu	37	12	86373690	86373690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_013244.3	-1	validated	p.L272V	0.918	102	0%	132	37.9%	1	0%	probably_damaging(0.967)	tolerated(0.11)	deleterious(0.680)	HMMPfam_Glyco_transf_54
KITLG	4254	genome.wustl.edu	37	12	88939596	88939596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000899.3	-1	reviewed	p.P21H	1.000	261	0%	293	37.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SCF
CCDC38	120935	genome.wustl.edu	37	12	96273519	96273519	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_182496.2	-1	validated	p.L349	1.000	369	0%	460	37.8%	0	-	-	-	-	NULL
APAF1	317	genome.wustl.edu	37	12	99042272	99042272	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_181861.1	+1	reviewed	p.N45	0.544	135	0%	198	38.4%	0	-	-	-	-	HMMPfam_CARD,superfamily_WD40 repeat-like
GOLGA2P5	55592	genome.wustl.edu	37	12	100560229	100560229	+	RNA	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NR_024261.1	-1	validated	NULL	0.035	27	0%	32	46.9%	5	80%	-	-	-	-
GNPTAB	79158	genome.wustl.edu	37	12	102164260	102164260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024312.4	-1	reviewed	p.I346T	1.000	142	0%	188	18.1%	6	0%	possibly_damaging(0.673)	deleterious(0)	deleterious(0.683)	NULL
ALDH1L2	160428	genome.wustl.edu	37	12	105420413	105420413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001034173.3	-1	reviewed	p.A876S	1.000	306	0%	359	32.3%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_Aldedh,superfamily_ALDH-like
CKAP4	10970	genome.wustl.edu	37	12	106633701	106633701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006825.3	-1	validated	p.E304*	0.729	206	0%	181	33.1%	30	13.3%	-	-	-	NULL
ENSG00000247270	0	genome.wustl.edu	37	12	108133066	108133066	+	RNA	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000500685	+1	known	NULL	0.000	70	0%	50	34%	0	-	-	-	-	-
C12orf52	84934	genome.wustl.edu	37	12	113624752	113624752	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032848.1	+1	predicted	p.G67	0.000	95	0%	57	21.1%	13	38.4%	-	-	-	NULL
SLC24A6	80024	genome.wustl.edu	37	12	113770675	113770675	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024959.2	-1	validated	p.G3	0.009	37	0%	46	39.1%	3	33.3%	-	-	-	NULL
HPD	3242	genome.wustl.edu	37	12	122281717	122281718	+	Frame_Shift_Del	DEL	CT	CT	-	rs142252243	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002150.2	-1	reviewed	p.G285fs	1.000:0.977	-	-	-	-	-	-	-	-	-	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RSRC2	65117	genome.wustl.edu	37	12	123005052	123005052	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_198261.2	-1	validated	p.R3fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ABCB9	23457	genome.wustl.edu	37	12	123430617	123430617	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_019625.3	-1	reviewed	p.N402	1.000	92	0%	57	22.8%	3	33.3%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNAH10	196385	genome.wustl.edu	37	12	124379252	124379252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_207437.3	+1	validated	p.V2970I	0.996	307	0%	293	38.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AACS	65985	genome.wustl.edu	37	12	125613907	125613907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_023928.3	+1	validated	p.E484K	1.000	209	0%	189	38.6%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SKA3	221150	genome.wustl.edu	37	13	21742505	21742505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000314759	-1	known	p.E122G	0.003	111	0%	152	38.2%	5	40%	benign(0.008)	tolerated(0.16)	neutral(0.059)	NULL
C1QTNF9B	387911	genome.wustl.edu	37	13	24466173	24466173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001007537.1	-1	provisional	p.G86D	1.000	414	0%	452	19.7%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
LNX2	222484	genome.wustl.edu	37	13	28136705	28136705	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_153371.3	-1	validated	p.R357*	1.000	319	0%	270	35.9%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
MTUS2	23281	genome.wustl.edu	37	13	30054376	30054376	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001033602.2	+1	validated	p.Q1102*	1.000	14	0%	16	43.8%	0	-	-	-	-	NULL
WBP4	11193	genome.wustl.edu	37	13	41639194	41639194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007187.3	+1	reviewed	p.V40M	1.000	436	0%	621	34.3%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ZnF_U1,HMMPfam_zf-U1,superfamily_SSF57667
DGKH	160851	genome.wustl.edu	37	13	42763329	42763329	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_178009.2	+1	reviewed	p.L599H	0.129	230	0%	198	33.3%	2	50%	benign(0.002)	tolerated(0.13)	neutral(0.253)	NULL
CYSLTR2	57105	genome.wustl.edu	37	13	49281358	49281358	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020377.2	+1	reviewed	p.V135	0.805	459	0%	402	40%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MLNR	2862	genome.wustl.edu	37	13	49796220	49796220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001507.1	+1	provisional	p.V316I	0.967	181	0%	205	40.5%	0	-	benign(0.069)	tolerated(0.21)	neutral(0.048)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CKAP2	26586	genome.wustl.edu	37	13	53035694	53035694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001098525.1	+1	validated	p.T246A	0.000	244	0%	298	12.4%	15	26.6%	benign(0.01)	tolerated(0.8)	neutral(0.001)	NULL
MBNL2	10150	genome.wustl.edu	37	13	98009870	98009870	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_144778.2	+1	reviewed	p.H313	0.999	133	0%	149	31.5%	4	25%	-	-	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109318443	109318443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015011.1	+1	validated	p.F58L	0.935	74	0%	100	39%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ankyrin repeat
ADPRHL1	113622	genome.wustl.edu	37	13	114077175	114077175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_138430.3	-1	validated	p.G343C	1.000	84	0%	54	44.4%	9	77.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ADP-ribosylglycohydrolase
PCK2	5106	genome.wustl.edu	37	14	24572070	24572070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004563.2	+1	reviewed	p.A448V	1.000	70	0%	76	10.5%	21	19%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_PEPCK,superfamily_PEP carboxykinase-like
LTB4R2	56413	genome.wustl.edu	37	14	24780759	24780759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_019839.4	+1	validated	p.P328A	0.997	48	0%	24	33.3%	0	-	possibly_damaging(0.921)	tolerated(0.48)	neutral(0.382)	NULL
STRN3	29966	genome.wustl.edu	37	14	31420108	31420108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001083893.1	-1	validated	p.S168N	1.000	342	0%	400	43.2%	2	0%	benign(0.057)	tolerated(0.07)	neutral(0.323)	HMMPfam_Striatin
METTL21D	79609	genome.wustl.edu	37	14	50582599	50582599	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024558.2	-1	validated	p.P136	0.437	167	0%	202	31.7%	2	50%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
GPHN	10243	genome.wustl.edu	37	14	67647553	67647553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020806.4	+1	reviewed	p.R737C	1.000	266	0%	267	34.5%	20	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_MoeA_C,superfamily_MoeA_C
NUMB	8650	genome.wustl.edu	37	14	73743688	73743688	+	Silent	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001005743.1	-1	reviewed	p.P518	1.000	110	0%	69	40.6%	45	42.2%	-	-	-	NULL
UNC79	57578	genome.wustl.edu	37	14	94079316	94079316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020818.3	+1	validated	p.R1133*	1.000	219	0%	202	12.4%	0	-	-	-	-	NULL
SERPINA11	256394	genome.wustl.edu	37	14	94912803	94912804	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001080451.1	-1	provisional	p.C261fs	1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
RTL1	388015	genome.wustl.edu	37	14	101348755	101348755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001134888.2	-1	reviewed	p.K791E	0.860	295	0%	201	34.8%	0	-	probably_damaging(0.995)	tolerated(0.24)	deleterious(0.495)	superfamily_DNA/RNA polymerases
MIR543	100126335	genome.wustl.edu	37	14	101498383	101498383	+	RNA	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000390751	+1	known	NULL	1.000	545	0.4%	445	31.5%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102471423	102471423	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001376.4	+1	reviewed	p.N1761	0.973	59	0%	59	39%	0	-	-	-	-	NULL
SIVA1	10572	genome.wustl.edu	37	14	105221978	105221978	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006427.3	+1	reviewed	p.R44*	0.995	90	0%	59	42.4%	95	26.3%	-	-	-	HMMPfam_Siva
AKT1	207	genome.wustl.edu	37	14	105246470	105246470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001014431.1	-1	reviewed	p.D44N	1.000	89	0%	56	35.7%	44	50%	benign(0.119)	tolerated(0.44)	neutral(0.022)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
OTUD7A	161725	genome.wustl.edu	37	15	31818566	31818566	+	Silent	SNP	G	G	A	rs184361722	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_130901.1	-1	provisional	p.G286	0.947	67	0%	33	18.2%	0	-	-	-	-	HMMPfam_OTU
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42127333	42127333	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005090.3	+1	validated	p.V128	1.000	42	0%	33	24.2%	18	16.6%	-	-	-	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
CAPN3	825	genome.wustl.edu	37	15	42693952	42693952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000070.2	+1	reviewed	p.R490W	0.996	115	0%	81	33.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
STARD9	57519	genome.wustl.edu	37	15	42967922	42967922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	XM_001129482.3	+1	model	p.A535V	1.000	100	0%	87	46%	0	-	probably_damaging(0.998)	-	-	NULL
ZSCAN29	146050	genome.wustl.edu	37	15	43658789	43658789	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152455.3	-1	validated	p.H247	1.000	278	0.4%	260	39.6%	3	0%	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44865011	44865011	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_025137.3	-1	reviewed	p.K2071	0.999	297	0%	316	38.3%	23	39.1%	-	-	-	NULL
CEP152	22995	genome.wustl.edu	37	15	49030612	49030612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014985.2	-1	provisional	p.C1600Y	0.000	307	0%	381	42.3%	2	50%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
DYX1C1	161582	genome.wustl.edu	37	15	55722957	55722957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_130810.2	-1	reviewed	p.A392T	1.000	423	0%	499	40.1%	12	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
NARG2	79664	genome.wustl.edu	37	15	60747214	60747214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024611.4	-1	validated	p.I311L	0.268	272	0%	437	38.7%	2	0%	possibly_damaging(0.738)	tolerated(0.23)	neutral(0.311)	NULL
SPG21	51324	genome.wustl.edu	37	15	65273279	65273279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001127889.1	-1	reviewed	p.P50S	1.000	150	0%	133	33.8%	34	55.8%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	superfamily_SSF53474
ACAN	176	genome.wustl.edu	37	15	89398456	89398456	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_013227.3	+1	reviewed	p.L880	0.000	125	0%	93	46.2%	0	-	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90348674	90348674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001150.2	-1	reviewed	p.M212T	1.000	158	0%	111	30.6%	202	58.4%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Peptidase_M1,superfamily_SSF63737
ZNF774	342132	genome.wustl.edu	37	15	90903973	90903973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001004309.2	+1	validated	p.S304A	0.700	44	0%	35	40%	1	0%	benign(0.235)	tolerated(0.06)	neutral(0.346)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VPS33B	26276	genome.wustl.edu	37	15	91543804	91543804	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018668.3	-1	reviewed	p.G499	0.950	107	0%	98	30.6%	17	23.5%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SYNM	23336	genome.wustl.edu	37	15	99670282	99670283	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000336292	+1	known	p.E576fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100594188	100594188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_139057.2	-1	reviewed	p.A737T	1.000	312	0%	254	37%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ADAM_spacer1
MPG	4350	genome.wustl.edu	37	16	129433	129433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002434.2	+1	validated	p.R17W	0.004	51	0%	52	38.5%	34	32.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
RGS11	8786	genome.wustl.edu	37	16	323526	323526	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_183337.1	-1	reviewed	p.R179	0.995	34	0%	18	38.9%	0	-	-	-	-	NULL
WFIKKN1	117166	genome.wustl.edu	37	16	682678	682678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_053284.2	+1	reviewed	p.A90T	0.088	18	0%	10	60%	0	-	benign(0.055)	tolerated(0.13)	neutral(0.256)	NULL
CHTF18	63922	genome.wustl.edu	37	16	845185	845186	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022092.2	+1	validated	p.V671fs	0.001:0.996	-	-	-	-	-	-	-	-	-	NULL
BAIAP3	8938	genome.wustl.edu	37	16	1394833	1394833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003933.3	+1	reviewed	p.R633W	1.000	131	0%	86	41.9%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF1041
ZNF597	146434	genome.wustl.edu	37	16	3487222	3487222	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152457.1	-1	provisional	p.P159	0.984	316	0%	426	35.4%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ERCC4	2072	genome.wustl.edu	37	16	14041948	14041948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005236.2	+1	reviewed	p.T832I	0.915	117	0%	114	39.5%	2	50%	possibly_damaging(0.593)	deleterious(0.01)	deleterious(0.611)	NULL
SBK1	388228	genome.wustl.edu	37	16	28328785	28328785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001024401.2	+1	provisional	p.P25S	0.052	59	0%	28	28.6%	1	0%	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
APOBR	55911	genome.wustl.edu	37	16	28507614	28507614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_018690.2	+1	reviewed	p.E409*	0.032	164	0%	125	37.6%	3	33.3%	-	-	-	NULL
SEPT1	1731	genome.wustl.edu	37	16	30389824	30389824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_052838.2	-1	reviewed	p.E345D	1.000	44	0%	31	32.3%	22	18.1%	benign(0.047)	tolerated(0.32)	neutral(0.027)	NULL
BCKDK	10295	genome.wustl.edu	37	16	31122051	31122051	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005881.2	+1	validated	p.K229*	1.000	136	0%	108	33.3%	29	0%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
LOC401847	401847	genome.wustl.edu	37	16	33605671	33605671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	XM_001718104.2	+1	model	p.Y114H	1.000	126	0%	161	16.8%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
SALL1	6299	genome.wustl.edu	37	16	51174288	51174288	+	Silent	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002968.2	-1	reviewed	p.S615	0.705	64	0%	45	37.8%	4	0%	-	-	-	NULL
RBL2	5934	genome.wustl.edu	37	16	53503980	53503980	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005611.3	+1	validated	p.Q710*	1.000	137	0%	123	35%	11	9%	-	-	-	NULL
CES5A	221223	genome.wustl.edu	37	16	55893467	55893467	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001143685.1	-1	validated	p.L350	0.464	118	0%	113	37.2%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
HYDIN	54768	genome.wustl.edu	37	16	70863675	70863675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032821.2	-1	validated	p.N4652S	1.000	193	0%	157	22.3%	0	-	benign(0.034)	deleterious(0)	neutral(0.447)	NULL
TXNL4B	54957	genome.wustl.edu	37	16	72122907	72122907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001142317.1	-1	validated	p.Q88R	1.000	296	0%	406	38.7%	10	40%	benign(0.065)	tolerated(0.2)	neutral(0.053)	HMMPfam_DIM1,superfamily_Thiordxn-like_fd
CLEC18B	497190	genome.wustl.edu	37	16	74447564	74447564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001011880.2	-1	validated	p.A156V	1.000	269	0%	183	13.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
DNAAF1	123872	genome.wustl.edu	37	16	84188402	84188402	+	Silent	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_178452.4	+1	reviewed	p.L191	0.988	122	0%	120	30.8%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
WDR81	124997	genome.wustl.edu	37	17	1630463	1630463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000409644	+1	known	p.T737M	0.999	46	0%	44	29.5%	3	66.6%	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_WD40 repeat-like
SPNS2	124976	genome.wustl.edu	37	17	4416544	4416544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001124758.1	+1	provisional	p.V125I	0.954	64	0%	44	36.4%	1	0%	possibly_damaging(0.929)	tolerated(0.19)	neutral(0.425)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MYH10	4628	genome.wustl.edu	37	17	8413197	8413197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005964.1	-1	validated	p.E977A	1.000	270	0%	283	37.8%	7	42.8%	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	NULL
RAI1	10743	genome.wustl.edu	37	17	17700254	17700254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_030665.3	+1	reviewed	p.A1331V	1.000	24	0%	21	38.1%	6	16.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
LRRC48	83450	genome.wustl.edu	37	17	17897633	17897633	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001130090.1	+1	validated	p.K204	0.995	79	0%	53	26.4%	5	20%	-	-	-	superfamily_Outer arm dynein light chain 1
SPECC1	92521	genome.wustl.edu	37	17	20107710	20107711	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001033553.1	+1	validated	p.S119fs	0.945:0.988	-	-	-	-	-	-	-	-	-	NULL
SPECC1	92521	genome.wustl.edu	37	17	20107730	20107730	+	Missense_Mutation	SNP	G	G	T	rs190108325	by1000genomes	TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001033553.1	+1	validated	p.R123L	1.000	145	0%	159	40.9%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
USP22	23326	genome.wustl.edu	37	17	20919197	20919197	+	Silent	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015276.1	-1	validated	p.R236	1.000	107	0%	57	47.4%	30	26.6%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
MYO18A	399687	genome.wustl.edu	37	17	27438479	27438479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_078471.3	-1	validated	p.T955A	0.818	260	0%	148	29.7%	10	50%	benign(0.008)	tolerated(0.7)	neutral(0.002)	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC6A4	6532	genome.wustl.edu	37	17	28543134	28543134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001045.4	-1	reviewed	p.L313S	1.000	148	0%	157	39.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_SNF
NF1	4763	genome.wustl.edu	37	17	29654615	29654615	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001042492.2	+1	reviewed	p.E1789	1.000	164	0%	186	38.7%	1	0%	-	-	-	NULL
MED1	5469	genome.wustl.edu	37	17	37604110	37604110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004774.3	-1	reviewed	p.A25T	1.000	448	0%	481	10%	0	-	unknown(0)	tolerated(0.07)	-	HMMPfam_Med1-Trap220
KRT28	162605	genome.wustl.edu	37	17	38953457	38953457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_181535.3	-1	reviewed	p.A256V	0.802	133	0.8%	81	48.1%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Filament
CNTD1	124817	genome.wustl.edu	37	17	40951221	40951221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_173478.2	+1	validated	p.R46W	0.000	54	0%	39	28.2%	0	-	probably_damaging(0.973)	tolerated(0.19)	neutral(0.464)	superfamily_Cyclin-like
MAPT	4137	genome.wustl.edu	37	17	44073955	44073955	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001123066.3	+1	validated	p.P584	1.000	42	0%	29	27.6%	1	0%	-	-	-	HMMPfam_Tubulin-binding
KANSL1	284058	genome.wustl.edu	37	17	44249125	44249125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015443.2	-1	validated	p.P129A	1.000	224	0%	210	21%	3	33.3%	probably_damaging(0.954)	tolerated(0.25)	neutral(0.434)	NULL
FAM117A	81558	genome.wustl.edu	37	17	47810029	47810029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_030802.3	-1	validated	p.L84F	1.000	139	0%	130	40.8%	5	20%	possibly_damaging(0.509)	tolerated(0.12)	neutral(0.431)	NULL
AXIN2	8313	genome.wustl.edu	37	17	63554672	63554672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004655.3	-1	reviewed	p.R23W	0.952	37	0%	28	39.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BPTF	2186	genome.wustl.edu	37	17	65889664	65889666	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_182641.3	+1	reviewed	p.D746in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DNAI2	64446	genome.wustl.edu	37	17	72285759	72285759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_023036.4	+1	reviewed	p.A165V	1.000	151	0%	104	37.5%	0	-	benign(0.002)	tolerated(0.62)	neutral(0.004)	superfamily_WD40 repeat-like
CD300LB	124599	genome.wustl.edu	37	17	72518936	72518936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_174892.2	-1	validated	p.G220W	0.000	202	0%	177	43.5%	0	-	probably_damaging(0.989)	tolerated(0.28)	deleterious(0.471)	NULL
LGALS3BP	3959	genome.wustl.edu	37	17	76968470	76968470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005567.3	-1	reviewed	p.P316S	0.952	13	0%	20	55%	507	41%	benign(0.002)	tolerated(0.26)	neutral(0.034)	HMMPfam_BACK
BAHCC1	57597	genome.wustl.edu	37	17	79412396	79412396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000436173	+1	known	p.Q951R	0.123	9	0.000	12	0.333	2	50%	benign(0)	tolerated(1)	-	NULL
SMAD2	4087	genome.wustl.edu	37	18	45394805	45394805	+	Silent	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001003652.2	-1	reviewed	p.R182	0.994	222	0%	258	38.8%	24	20.8%	-	-	-	NULL
SERPINB8	5271	genome.wustl.edu	37	18	61649057	61649057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000295211	+1	known	p.W78*	0.002	339	0%	331	37.2%	6	16.6%	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CD226	10666	genome.wustl.edu	37	18	67563114	67563114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006566.2	-1	reviewed	p.G184S	0.118	155	0%	150	38.7%	0	-	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMSmart_IGc2,HMMPfam_V-set,superfamily_SSF48726
TSHZ1	10194	genome.wustl.edu	37	18	72998196	72998196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005786.4	+1	reviewed	p.K233N	1.000	67	0%	68	30.9%	67	50.7%	possibly_damaging(0.927)	tolerated(0.08)	deleterious(0.675)	NULL
ZNF236	7776	genome.wustl.edu	37	18	74620345	74620345	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007345.3	+1	validated	p.Q787	1.000	40	0%	31	48.4%	0	-	-	-	-	NULL
CELF5	60680	genome.wustl.edu	37	19	3273915	3273915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021938.3	+1	reviewed	p.G130R	0.998	119	0%	70	37.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
INSR	3643	genome.wustl.edu	37	19	7119483	7119483	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000208.2	-1	reviewed	p.Q1257	0.983	213	0%	224	36.2%	3	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HNRNPM	4670	genome.wustl.edu	37	19	8528527	8528527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005968.3	+1	validated	p.L132P	1.000	299	0%	342	37.7%	97	43.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF426	79088	genome.wustl.edu	37	19	9641674	9641674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024106.1	-1	provisional	p.I132T	0.000	260	0%	356	38.8%	0	-	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
FBXL12	54850	genome.wustl.edu	37	19	9921710	9921710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017703.1	-1	provisional	p.M281I	1.000	192	0%	116	29.3%	7	42.8%	benign(0.006)	tolerated(0.46)	neutral(0.012)	superfamily_RNI-like
RDH8	50700	genome.wustl.edu	37	19	10132286	10132286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015725.2	+1	validated	p.T266M	0.787	110	0%	71	46.5%	0	-	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	superfamily_NAD(P)-bd
MAST1	22983	genome.wustl.edu	37	19	12951307	12951307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014975.2	+1	validated	p.P44L	1.000	279	0%	138	36.2%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
FARSA	2193	genome.wustl.edu	37	19	13035583	13035583	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004461.2	-1	validated	p.R355	0.001	113	0%	75	38.7%	103	48.5%	-	-	-	HMMPfam_tRNA-synt_2d,superfamily_Class II aaRS and biotin synthetases
CALR	811	genome.wustl.edu	37	19	13051444	13051444	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004343.3	+1	reviewed	p.P264	0.548	172	0%	174	36.8%	871	41.5%	-	-	-	HMMPfam_Calreticulin
EPS15L1	58513	genome.wustl.edu	37	19	16524628	16524628	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_021235.1	-1	provisional	p.R408*	0.306	424	0%	511	37%	5	20%	-	-	-	NULL
MAST3	23031	genome.wustl.edu	37	19	18242813	18242813	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015016.1	+1	validated	p.Y480	1.000	88	0%	34	14.7%	3	33.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PIK3R2	5296	genome.wustl.edu	37	19	18271916	18271916	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005027.2	+1	validated	p.G173	0.006	28	0%	10	50%	6	66.6%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SUGP2	10147	genome.wustl.edu	37	19	19135430	19135430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001017392.3	-1	reviewed	p.D576A	0.020	108	0%	166	30.7%	20	60%	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_Surp module (SWAP domain Pfam 01805)
LOC100287226	100287226	genome.wustl.edu	37	19	22497668	22497668	+	Silent	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	XM_002343636.1	+1	model	p.T350	1.000	43	0%	77	39%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
HAUS5	23354	genome.wustl.edu	37	19	36110588	36110588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015302.1	+1	validated	p.R445H	0.012	52	0%	27	18.5%	7	28.5%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
BLVRB	645	genome.wustl.edu	37	19	40964286	40964286	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000713.2	-1	validated	e2+2	1.000	13	0%	13	38.5%	10	100%	-	-	-	-
CYTH2	9266	genome.wustl.edu	37	19	48973874	48973874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_017457.4	+1	reviewed	p.R61Q	1.000	198	0%	132	36.4%	35	37.1%	benign(0.037)	tolerated(0.1)	neutral(0.288)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
MED25	81857	genome.wustl.edu	37	19	50338244	50338244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_030973.3	+1	reviewed	p.A495V	1.000	100	0%	57	40.4%	132	34.8%	benign(0.402)	tolerated(0.14)	neutral(0.379)	NULL
PNKP	11284	genome.wustl.edu	37	19	50365123	50365123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007254.2	-1	provisional	p.W402G	0.947	74	0%	35	45.7%	129	59.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF52540
SIGLEC10	89790	genome.wustl.edu	37	19	51917045	51917045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_033130.4	-1	validated	p.T581I	0.000	248	0%	205	31.7%	6	0%	benign(0.087)	tolerated(0.2)	neutral(0.056)	NULL
FPR2	2358	genome.wustl.edu	37	19	52272166	52272166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001005738.1	+1	validated	p.M85I	0.230	323	0%	288	37.8%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF320	162967	genome.wustl.edu	37	19	53384627	53384627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_207333.2	-1	validated	p.G251D	0.997	191	0%	278	35.3%	9	22.2%	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GP6	51206	genome.wustl.edu	37	19	55526132	55526132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001083899.1	-1	validated	p.P394L	0.001	90	0%	60	45%	0	-	unknown(0)	-	-	NULL
NLRP8	126205	genome.wustl.edu	37	19	56466069	56466069	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_176811.2	+1	provisional	p.G215	0.379	105	0%	107	39.3%	0	-	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF583	147949	genome.wustl.edu	37	19	56935682	56935682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_152478.2	+1	validated	p.S552Y	0.912	241	0%	270	31.1%	7	57.1%	benign(0.404)	deleterious(0)	deleterious(0.575)	NULL
ZNF329	79673	genome.wustl.edu	37	19	58640089	58640089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024620.3	-1	validated	p.C261Y	0.997	245	0%	298	10.4%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
JAG1	182	genome.wustl.edu	37	20	10653355	10653355	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000214.2	-1	reviewed	p.A127	1.000	17	0%	10	40%	5	20%	-	-	-	NULL
PCSK2	5126	genome.wustl.edu	37	20	17208102	17208102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002594.2	+1	reviewed	p.A51V	1.000	225	0%	120	36.7%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_Protease propeptides/inhibitors
NCOA6	23054	genome.wustl.edu	37	20	33346716	33346716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_014071.2	-1	reviewed	p.P179T	0.992	143	0%	150	30.7%	2	50%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
MYH7B	57644	genome.wustl.edu	37	20	33586552	33586552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_020884.3	+1	reviewed	p.A1384T	1.000	28	0%	22	27.3%	0	-	benign(0.05)	deleterious(0.01)	neutral(0.409)	HMMPfam_Myosin_tail_1
C20orf4	25980	genome.wustl.edu	37	20	34827960	34827962	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015511.3	+1	predicted	p.L58in_frame_del	1.000:0.998:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_AAR2
PLCG1	5335	genome.wustl.edu	37	20	39801087	39801087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002660.2	+1	reviewed	p.R978W	1.000	86	0%	79	40.5%	19	10.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
CHD6	84181	genome.wustl.edu	37	20	40033901	40033901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032221.3	-1	reviewed	p.G2494W	1.000	100	0%	109	27.5%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHD6	84181	genome.wustl.edu	37	20	40053913	40053913	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032221.3	-1	reviewed	p.E1417D	0.954	268	0%	255	39.2%	2	0%	possibly_damaging(0.472)	tolerated(0.06)	deleterious(0.479)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45878029	45878029	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_183047.1	-1	reviewed	e13+2	1.000	157	0%	184	37%	4	100%	-	-	-	-
PARD6B	84612	genome.wustl.edu	37	20	49366347	49366347	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_032521.2	+1	reviewed	p.D147	0.985	160	0%	228	32.9%	4	25%	-	-	-	superfamily_PDZ
RAE1	8480	genome.wustl.edu	37	20	55948638	55948638	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001015885.1	+1	reviewed	e8+1	1.000	323	0%	415	39%	2	50%	-	-	-	-
NPEPL1	79716	genome.wustl.edu	37	20	57276071	57276071	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_024663.3	+1	validated	e6-1	1.000	39	0%	36	47.2%	0	-	-	-	-	-
PRIC285	85441	genome.wustl.edu	37	20	62197014	62197014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001037335.2	-1	reviewed	p.A1054V	0.001	13	0.000	9	0.778	7	57.1%	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
TPD52L2	7165	genome.wustl.edu	37	20	62505020	62505020	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_199360.1	+1	validated	e3-1	1.000	45	0%	63	34.9%	0	-	-	-	-	-
APP	351	genome.wustl.edu	37	21	27269895	27269895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000484.3	-1	reviewed	p.H685R	1.000	355	0%	416	40.6%	505	31.4%	possibly_damaging(0.448)	tolerated(0.19)	neutral(0.196)	HMMPfam_Beta-APP
ADAMTS1	9510	genome.wustl.edu	37	21	28211985	28211985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_006988.3	-1	reviewed	p.A650V	1.000	100	0%	102	38.2%	11	27.2%	benign(0.059)	deleterious(0.01)	neutral(0.410)	NULL
LTN1	26046	genome.wustl.edu	37	21	30357117	30357117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_015565.2	-1	validated	p.T158A	1.000	258	0%	295	35.3%	0	-	possibly_damaging(0.619)	tolerated(0.21)	neutral(0.260)	superfamily_ARM repeat
KCNE2	9992	genome.wustl.edu	37	21	35743006	35743006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_172201.1	+1	reviewed	p.R77W	0.926	219	0%	230	29.6%	0	-	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMPfam_ISK_Channel
DSCAM	1826	genome.wustl.edu	37	21	41505835	41505835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001389.3	-1	validated	p.R1170C	0.999	220	0%	183	50.3%	0	-	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TRPM2	7226	genome.wustl.edu	37	21	45795827	45795827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_003307.3	+1	reviewed	p.Y295H	0.871	267	0%	197	32.5%	1	0%	possibly_damaging(0.911)	tolerated(0.53)	neutral(0.370)	NULL
COL6A2	1292	genome.wustl.edu	37	21	47532435	47532435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001849.3	+1	reviewed	p.L220	0.031	7	0.000	8	0.625	101	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PI4KA	5297	genome.wustl.edu	37	22	21063601	21063601	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_058004.2	-1	reviewed	p.S2022	1.000	341	0%	210	26.2%	51	35.2%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
SDF2L1	23753	genome.wustl.edu	37	22	21998208	21998208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022044.2	+1	validated	p.G137D	1.000	68	0%	70	42.9%	216	38.4%	possibly_damaging(0.913)	tolerated(0.15)	deleterious(0.605)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
CRYBA4	1413	genome.wustl.edu	37	22	27026312	27026312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001886.2	+1	reviewed	p.C151Y	1.000	318	0%	246	31.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
NF2	4771	genome.wustl.edu	37	22	30070930	30070930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000432151	+1	known	p.A210T	1.000	43	4.7%	23	52.2%	14	42.8%	unknown(0)	tolerated(0.13)	-	NULL
LARGE	9215	genome.wustl.edu	37	22	33780289	33780289	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004737.4	-1	reviewed	p.G298	0.990	138	0.7%	127	29.9%	1	100%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
APOL6	80830	genome.wustl.edu	37	22	36055234	36055234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_030641.3	+1	reviewed	p.G208D	0.019	66	0%	56	28.6%	4	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ApoL
DMC1	11144	genome.wustl.edu	37	22	38934335	38934335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007068.2	-1	reviewed	p.A247V	1.000	79	0%	87	40.2%	0	-	probably_damaging(0.955)	tolerated(0.11)	deleterious(0.670)	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540
EP300	2033	genome.wustl.edu	37	22	41531815	41531815	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001429.3	+1	reviewed	e7-2	1.000	406	0%	535	36.6%	0	-	-	-	-	-
NDUFA6	4700	genome.wustl.edu	37	22	42482196	42482196	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_002490.3	-1	validated	p.H152	0.038	304	0%	320	38.4%	237	40.5%	-	-	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42608112	42608112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005650.1	-1	reviewed	p.T1067I	0.874	195	0%	217	15.7%	2	50%	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	NULL
CELSR1	9620	genome.wustl.edu	37	22	46930653	46930653	+	Silent	SNP	G	G	A	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000454637	-1	known	p.A180V	1.000	51	0%	49	42.9%	3	100%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	67643	67643	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000400851	+1	known	p.G374*	NULL	176	0.6%	162	39.5%	0	-	-	-	-	NULL
PPP2R3B	28227	genome.wustl.edu	37	X	308048	308048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_013239.4	-1	reviewed	p.D213G	1.000	344	0%	195	33.3%	11	45.4%	possibly_damaging(0.947)	tolerated(0.16)	neutral(0.450)	superfamily_EF-hand
TLR7	51284	genome.wustl.edu	37	X	12906583	12906583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016562.3	+1	reviewed	p.I986V	1.000	260	0%	291	36.8%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
GRPR	2925	genome.wustl.edu	37	X	16170613	16170613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005314.2	+1	reviewed	p.N334H	1.000	159	0%	108	35.2%	1	100%	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	superfamily_Family A G protein-coupled receptor-like
GPR64	10149	genome.wustl.edu	37	X	19049155	19049155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001079858.2	-1	validated	p.G102D	1.000	237	0%	268	39.6%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
DMD	1756	genome.wustl.edu	37	X	32328347	32328347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004006.2	-1	reviewed	p.P1990H	1.000	298	0%	231	33.3%	0	-	possibly_damaging(0.63)	deleterious(0.01)	deleterious(0.626)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54785088	54785088	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_198510.2	-1	reviewed	p.L473	1.000	74	0%	54	42.6%	0	-	-	-	-	superfamily_SSF53300
ZXDB	158586	genome.wustl.edu	37	X	57620826	57620826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_007157.3	+1	validated	p.A782V	0.214	465	0%	505	14.7%	2	0%	benign(0.088)	deleterious(0)	neutral(0.451)	NULL
LAS1L	81887	genome.wustl.edu	37	X	64738005	64738005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_031206.4	-1	validated	p.D597N	0.004	733	0%	589	34.3%	34	88.2%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
AR	367	genome.wustl.edu	37	X	66905968	66905968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	ENST00000504326	+1	known	p.E629*	1.000	298	0%	244	37.3%	0	-	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
RAB41	347517	genome.wustl.edu	37	X	69502144	69502144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001032726.2	+1	reviewed	p.Y26C	0.023	275	0%	251	47%	0	-	possibly_damaging(0.932)	tolerated(0.13)	deleterious(0.631)	NULL
MED12	9968	genome.wustl.edu	37	X	70344972	70344972	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_005120.2	+1	reviewed	p.Y734	0.964	198	0%	153	37.3%	1	0%	-	-	-	NULL
NHSL2	340527	genome.wustl.edu	37	X	71360140	71360140	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001013627.2	+1	provisional	p.R548	0.757	156	0%	144	37.5%	0	-	-	-	-	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92926834	92926834	+	Silent	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_004538.4	-1	reviewed	p.G490	0.005	237	0%	326	39%	1	100%	-	-	-	HMMPfam_NAP
ARMCX1	51309	genome.wustl.edu	37	X	100808980	100808980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016608.1	+1	reviewed	p.E356G	1.000	112	0%	142	36.6%	2	0%	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX3	51566	genome.wustl.edu	37	X	100880133	100880133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_016607.3	+1	reviewed	p.A55V	0.996	111	0%	124	37.1%	12	0%	possibly_damaging(0.918)	tolerated(0.73)	neutral(0.370)	NULL
ZCCHC18	644353	genome.wustl.edu	37	X	103358980	103358980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001143978.1	+1	provisional	p.T60A	0.470	175	0%	204	48%	0	-	-	-	-	NULL
ACSL4	2182	genome.wustl.edu	37	X	108908699	108908699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_022977.2	-1	reviewed	p.V488A	1.000	394	0%	482	38.4%	10	10%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
RBMXL3	139804	genome.wustl.edu	37	X	114425902	114425902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001145346.1	+1	validated	p.Y633C	0.596	81	0%	60	35%	0	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117788746	117788746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_144658.3	+1	validated	p.A1626V	1.000	275	0%	286	34.3%	2	0%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
FGF13	2258	genome.wustl.edu	37	X	137785188	137785188	+	Silent	SNP	C	C	T	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001139500.1	-1	reviewed	p.K130	1.000	204	0%	224	45.5%	1	0%	-	-	-	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
ATP2B3	492	genome.wustl.edu	37	X	152815082	152815082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_001001344.2	+1	reviewed	p.Y489C	1.000	143	0%	120	35.8%	0	-	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
F8	2157	genome.wustl.edu	37	X	154159150	154159150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A160-01A-11D-A122-09	TCGA-D1-A160-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	587ec01b-c660-42c3-802b-36a170289bbc	2d817648-0743-4106-a922-a9c37b5fe2f1	NM_000132.3	-1	reviewed	p.M972T	0.000	100	0%	165	40.6%	0	-	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
