Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CALHM1	255022	broad.mit.edu	36	10	105205218	105205219	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001412	exon2	c.832_833insC	p.T278fs	.	.	.
ANK3	288	broad.mit.edu	36	10	61505314	61505315	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.5331_5332insC	p.P1777fs	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101080084	101080084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020348	exon1	c.G950A	p.S317N	.	.	.
PAX2	5076	broad.mit.edu	36	10	102577320	102577320	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003987	exon11	c.G1208C	p.R403P	.	.	.
MGEA5	10724	broad.mit.edu	36	10	103548834	103548834	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012215	exon9	c.A1564G	p.S522G	.	.	.
C10orf76	79591	broad.mit.edu	36	10	103756300	103756300	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024541	exon14	c.G1035A	p.P345P	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103907845	103907845	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004741	exon5	c.C491A	p.A164D	.	.	.
TAF5	6877	broad.mit.edu	36	10	105128135	105128135	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006951	exon3	c.G951A	p.L317L	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105788213	105788213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000494	exon45	c.C3011T	p.P1004L	.	.	.
ITPRIP	85450	broad.mit.edu	36	10	106065493	106065493	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033397	exon3	c.T307C	p.W103R	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108379008	108379008	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon19	c.C2604T	p.T868T	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108526375	108526375	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon4	c.T792G	p.T264T	.	.	.
ABLIM1	3983	broad.mit.edu	36	10	116325226	116325226	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002313	exon3	c.G502A	p.E168K	.	.	.
RAB11FIP2	22841	broad.mit.edu	36	10	119795607	119795607	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014904	exon1	c.C58T	p.L20F	.	.	.
TIAL1	7073	broad.mit.edu	36	10	121331707	121331707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033925	exon4	c.G298A	p.A100T	.	.	.
TACC2	10579	broad.mit.edu	36	10	123838019	123838019	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206862	exon5	c.G5496A	p.S1832S	.	.	.
C10orf120	399814	broad.mit.edu	36	10	124447443	124447443	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010912	exon3	c.C804T	p.P268P	.	.	.
MMP21	118856	broad.mit.edu	36	10	127445406	127445406	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147191	exon7	c.G1525A	p.A509T	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183460	128183460	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon3	c.T299C	p.F100S	.	.	.
DOCK1	1793	broad.mit.edu	36	10	129073065	129073065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001380	exon38	c.G3766A	p.A1256T	.	.	.
MKI67	4288	broad.mit.edu	36	10	129787476	129787476	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon14	c.A8659G	p.T2887A	.	.	.
MKI67	4288	broad.mit.edu	36	10	129793611	129793611	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.G5403A	p.R1801R	.	.	.
CYP2E1	1571	broad.mit.edu	36	10	135190930	135190930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000773	exon1	c.C41T	p.A14V	.	.	.
PTER	9317	broad.mit.edu	36	10	16593055	16593055	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001484	exon6	c.C844T	p.R282C	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21844688	21844688	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207371	exon4	c.A2070G	p.E690E	.	.	.
BMI1	648	broad.mit.edu	36	10	22655482	22655482	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005180	exon2	c.A98T	p.E33V	.	.	.
PIP4K2A	5305	broad.mit.edu	36	10	22868962	22868962	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005028	exon9	c.A1084G	p.T362A	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24873368	24873368	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon19	c.T5163C	p.G1721G	.	.	.
GPR158	57512	broad.mit.edu	36	10	25928015	25928015	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon11	c.C3454T	p.R1152C	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742781	27742781	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034842	exon1	c.C405T	p.G135G	.	.	.
MAP3K8	1326	broad.mit.edu	36	10	30779288	30779288	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005204	exon5	c.T600C	p.G200G	.	.	.
PITRM1	10531	broad.mit.edu	36	10	3198511	3198511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014889	exon4	c.G328A	p.V110I	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33240583	33240583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133376	exon13	c.G1730A	p.R577H	.	.	.
GJD4	219770	broad.mit.edu	36	10	35936570	35936570	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153368	exon2	c.G123A	p.G41G	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37530219	37530219	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052997	exon31	c.A2661G	p.T887T	.	.	.
DIP2C	22982	broad.mit.edu	36	10	384648	384648	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014974	exon26	c.T3164A	p.I1055K	.	.	.
DIP2C	22982	broad.mit.edu	36	10	420000	420000	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014974	exon16	c.C1843T	p.R615X	.	.	.
CXCL12	6387	broad.mit.edu	36	10	44191482	44191482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033886	exon4	c.C271T	p.R91C	.	.	.
OR13A1	79290	broad.mit.edu	36	10	45119038	45119038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004297	exon4	c.C839T	p.P280L	.	.	.
ZNF488	118738	broad.mit.edu	36	10	47991043	47991043	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153034	exon2	c.C505T	p.R169X	.	.	.
SLC18A3	6572	broad.mit.edu	36	10	50489403	50489403	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003055	exon1	c.A611G	p.Y204C	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50621021	50621021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143996	exon14	c.G1700A	p.R567H	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50622149	50622149	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143996	exon13	c.C1587A	p.P529P	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50625207	50625207	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143996	exon8	c.C870T	p.R290R	.	.	.
NCOA4	8031	broad.mit.edu	36	10	51255235	51255235	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145261	exon9	c.C1376A	p.P459H	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55643760	55643760	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon9	c.T929G	p.L310R	.	.	.
GDI2	2665	broad.mit.edu	36	10	5850283	5850283	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115156	exon7	c.T755C	p.V252A	.	.	.
ANKRD16	54522	broad.mit.edu	36	10	5969907	5969907	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009943	exon2	c.C444T	p.G148G	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5988415	5988415	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032807	exon4	c.T720C	p.P240P	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5988504	5988504	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032807	exon4	c.T809A	p.V270D	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60782210	60782210	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001971	exon3	c.C150T	p.D50D	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63521260	63521260	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032199	exon10	c.C2032A	p.L678I	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63522420	63522420	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032199	exon10	c.C3192T	p.G1064G	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68610178	68610178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013266	exon7	c.C950T	p.S317F	.	.	.
TET1	80312	broad.mit.edu	36	10	70116192	70116192	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon11	c.C5126A	p.P1709H	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72720699	72720699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170744	exon9	c.C1121T	p.A374V	.	.	.
CDH23	64072	broad.mit.edu	36	10	73131958	73131958	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022124	exon22	c.C2571T	p.V857V	.	.	.
DNAJB12	54788	broad.mit.edu	36	10	73766318	73766318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002762	exon7	c.C1078T	p.R360W	.	.	.
PPP3CB	5532	broad.mit.edu	36	10	74897345	74897345	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142353	exon9	c.G1080A	p.T360T	.	.	.
SYNPO2L	79933	broad.mit.edu	36	10	75076857	75076857	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024875	exon2	c.G1887T	p.Q629H	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7661928	7661928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030569	exon9	c.C1214T	p.T405M	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7697956	7697956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030569	exon7	c.C934T	p.R312W	.	.	.
ATP5C1	509	broad.mit.edu	36	10	7881019	7881019	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001973	exon4	c.G284T	p.G95V	.	.	.
DLG5	9231	broad.mit.edu	36	10	79251851	79251851	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004747	exon15	c.C2397T	p.S799S	.	.	.
DLG5	9231	broad.mit.edu	36	10	79258687	79258687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004747	exon13	c.G2248A	p.A750T	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79452074	79452074	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007055	exon6	c.G720A	p.M240I	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86121190	86121190	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018999	exon2	c.T402C	p.S134S	.	.	.
LDB3	11155	broad.mit.edu	36	10	88467856	88467856	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171610	exon11	c.C1847T	p.A616V	.	.	.
MMRN2	79812	broad.mit.edu	36	10	88694091	88694091	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024756	exon5	c.T563C	p.V188A	.	.	.
LIPJ	142910	broad.mit.edu	36	10	90343844	90343844	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010939	exon5	c.T292C	p.Y98H	.	.	.
ACTA2	59	broad.mit.edu	36	10	90690975	90690975	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141945	exon6	c.G607A	p.V203I	.	.	.
ACTA2	59	broad.mit.edu	36	10	90697079	90697079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141945	exon3	c.C174T	p.D58D	.	.	.
MYOF	26509	broad.mit.edu	36	10	95119479	95119479	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133337	exon24	c.G2463A	p.L821L	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96008568	96008568	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165979	exon11	c.G2652A	p.W884X	.	.	.
TLL2	7093	broad.mit.edu	36	10	98119905	98119905	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012465	exon20	c.T2820C	p.V940V	.	.	.
TLL2	7093	broad.mit.edu	36	10	98134483	98134483	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012465	exon16	c.G2045T	p.S682I	.	.	.
LCOR	84458	broad.mit.edu	36	10	98705400	98705400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032440	exon8	c.C1033T	p.R345C	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98798789	98798789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003061	exon14	c.G1378A	p.E460K	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102047321	102047321	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016112	exon5	c.764delG	p.G255fs	.	.	.
LZTS2	84445	broad.mit.edu	36	10	102752583	102752583	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032429	exon2	c.298delC	p.P100fs	.	.	.
SH3PXD2A	9644	broad.mit.edu	36	10	105353381	105353381	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014631	exon14	c.1500delC	p.P500fs	.	.	.
C10orf88	80007	broad.mit.edu	36	10	124701500	124701500	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024942	exon3	c.401delA	p.N134fs	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125504224	125504224	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198148	exon13	c.1962delA	p.K654fs	.	.	.
UROS	7390	broad.mit.edu	36	10	127473511	127473511	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000375	exon9	c.588delT	p.F196fs	.	.	.
FAM35A	54537	broad.mit.edu	36	10	88902370	88902370	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019054	exon3	c.1279delA	p.K427fs	.	.	.
C10orf82	143379	broad.mit.edu	36	10	118415105	118415105	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101338557	101338557	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020802	exon6	c.A1581G	p.I527M	.	.	.
MMP3	4314	broad.mit.edu	36	11	102219455	102219455	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002422	exon1	c.C33T	p.C11C	.	.	.
MMP12	4321	broad.mit.edu	36	11	102247846	102247846	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002426	exon3	c.G397A	p.A133T	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102560969	102560969	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon41	c.A6612G	p.S2204S	.	.	.
PDGFD	80310	broad.mit.edu	36	11	103319524	103319524	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033135	exon5	c.A620C	p.K207T	.	.	.
CASP5	838	broad.mit.edu	36	11	104384769	104384769	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136112	exon2	c.G195A	p.T65T	.	.	.
AMPD3	272	broad.mit.edu	36	11	10471598	10471598	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025389	exon7	c.C1066T	p.R356W	.	.	.
MUC2	4583	broad.mit.edu	36	11	1083690	1083690	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002457	exon31	c.A5497C	p.T1833P	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109541567	109541567	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033390	exon6	c.C2547T	p.F849F	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	110066504	110066504	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020809	exon3	c.C164T	p.A55V	.	.	.
SIK2	23235	broad.mit.edu	36	11	111096874	111096874	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015191	exon12	c.A1822C	p.T608P	.	.	.
ALG9	79796	broad.mit.edu	36	11	111185620	111185620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077691	exon14	c.G1177A	p.E393K	.	.	.
TTC12	54970	broad.mit.edu	36	11	112699356	112699356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017868	exon3	c.G195A	p.M65I	.	.	.
GALNTL4	374378	broad.mit.edu	36	11	11271179	11271179	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198516	exon10	c.G1650A	p.R550R	.	.	.
TMPRSS5	80975	broad.mit.edu	36	11	113065731	113065731	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030770	exon12	c.C1325T	p.A442V	.	.	.
CADM1	23705	broad.mit.edu	36	11	114607378	114607378	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014333	exon4	c.C467T	p.A156V	.	.	.
SIDT2	51092	broad.mit.edu	36	11	116557752	116557752	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040455	exon3	c.T325C	p.Y109H	.	.	.
TAGLN	6876	broad.mit.edu	36	11	116580146	116580146	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003186	exon5	c.C467T	p.A156V	.	.	.
RNF214	257160	broad.mit.edu	36	11	116657859	116657859	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077239	exon11	c.C1375A	p.L459M	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116813091	116813091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon26	c.C4857T	p.C1619C	.	.	.
TMPRSS13	84000	broad.mit.edu	36	11	117284578	117284578	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077263	exon9	c.A1241G	p.D414G	.	.	.
UBE4A	9354	broad.mit.edu	36	11	117758531	117758531	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004788	exon13	c.T2048C	p.L683P	.	.	.
IFT46	56912	broad.mit.edu	36	11	117935754	117935754	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168618	exon3	c.A1G	p.M1V	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118018298	118018298	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144758	exon13	c.C2853T	p.P951P	.	.	.
HMBS	3145	broad.mit.edu	36	11	118468705	118468705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000190	exon12	c.G799A	p.V267M	.	.	.
ABCG4	64137	broad.mit.edu	36	11	118534513	118534513	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142505	exon11	c.A1204T	p.I402F	.	.	.
USP47	55031	broad.mit.edu	36	11	11900943	11900943	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017944	exon10	c.G1111T	p.G371C	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119040886	119040886	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002855	exon6	c.C1335T	p.G445G	.	.	.
USP47	55031	broad.mit.edu	36	11	11916393	11916393	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017944	exon17	c.A1887C	p.K629N	.	.	.
TECTA	7007	broad.mit.edu	36	11	120528958	120528958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon12	c.C4264T	p.P1422S	.	.	.
SORL1	6653	broad.mit.edu	36	11	120934729	120934729	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003105	exon20	c.G2883A	p.P961P	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123352783	123352783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004474	exon1	c.C826T	p.P276S	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123392068	123392068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004462	exon1	c.G577A	p.A193T	.	.	.
OR8B12	219858	broad.mit.edu	36	11	123918694	123918694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005195	exon1	c.C67T	p.R23W	.	.	.
ESAM	90952	broad.mit.edu	36	11	124129808	124129808	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138961	exon5	c.C669T	p.V223V	.	.	.
ROBO3	64221	broad.mit.edu	36	11	124254338	124254338	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022370	exon24	c.G3576C	p.Q1192H	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124261867	124261867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019055	exon16	c.G2497A	p.V833I	.	.	.
CHEK1	1111	broad.mit.edu	36	11	125030402	125030402	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001274	exon13	c.A1408T	p.K470X	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125820171	125820171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon10	c.C1165T	p.R389C	.	.	.
APLP2	334	broad.mit.edu	36	11	129501912	129501912	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001642	exon8	c.C1198T	p.R400W	.	.	.
ZBTB44	29068	broad.mit.edu	36	11	129636867	129636867	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014155	exon2	c.C112T	p.Q38X	.	.	.
ADAMTS8	11095	broad.mit.edu	36	11	129794315	129794315	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007037	exon2	c.T803A	p.V268E	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133295758	133295758	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon18	c.G3072A	p.T1024T	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133304779	133304779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon12	c.T1628C	p.V543A	.	.	.
GLB1L2	89944	broad.mit.edu	36	11	133734177	133734177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138342	exon7	c.G665A	p.R222H	.	.	.
BTBD10	84280	broad.mit.edu	36	11	13399856	13399856	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032320	exon3	c.C207T	p.D69D	.	.	.
INSC	387755	broad.mit.edu	36	11	15168923	15168923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042536	exon6	c.G680A	p.R227H	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17375108	17375108	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon33	c.C4050T	p.S1350S	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18588015	18588015	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194285	exon6	c.G2027A	p.R676H	.	.	.
NAV2	89797	broad.mit.edu	36	11	20022373	20022373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111018	exon13	c.G2986A	p.A996T	.	.	.
NAV2	89797	broad.mit.edu	36	11	20092794	20092794	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111018	exon37	c.G6849A	p.Q2283Q	.	.	.
SLC5A12	159963	broad.mit.edu	36	11	26681969	26681969	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178498	exon5	c.A627G	p.G209G	.	.	.
CCDC34	91057	broad.mit.edu	36	11	27341008	27341008	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030771	exon1	c.G310A	p.E104K	.	.	.
WT1	7490	broad.mit.edu	36	11	32370150	32370150	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198551	exon9	c.A740C	p.K247T	.	.	.
ART1	417	broad.mit.edu	36	11	3637455	3637455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004314	exon3	c.G130A	p.A44T	.	.	.
RAG1	5896	broad.mit.edu	36	11	36552999	36552999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000448	exon2	c.G1569A	p.Q523Q	.	.	.
LRP4	4038	broad.mit.edu	36	11	46853706	46853706	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002334	exon27	c.A3802G	p.T1268A	.	.	.
OR52A5	390054	broad.mit.edu	36	11	5110382	5110382	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005160	exon1	c.G67C	p.E23Q	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178373	5178373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.C134T	p.A45V	.	.	.
HBE1	3046	broad.mit.edu	36	11	5247365	5247365	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005330	exon2	c.T210C	p.T70T	.	.	.
HBE1	3046	broad.mit.edu	36	11	5247460	5247460	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005330	exon2	c.A115C	p.T39P	.	.	.
OR51B6	390058	broad.mit.edu	36	11	5330003	5330003	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004750	exon1	c.A690G	p.G230G	.	.	.
UBQLNL	143630	broad.mit.edu	36	11	5493645	5493645	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145053	exon1	c.G603A	p.T201T	.	.	.
OR4P4	81300	broad.mit.edu	36	11	55162527	55162527	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004124	exon1	c.A118G	p.N40D	.	.	.
OR4P4	81300	broad.mit.edu	36	11	55162859	55162859	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004124	exon1	c.A450T	p.G150G	.	.	.
SPRYD5	84767	broad.mit.edu	36	11	55412266	55412266	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032681	exon4	c.T690G	p.Y230X	.	.	.
OR5W2	390148	broad.mit.edu	36	11	55438283	55438283	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001960	exon1	c.A352T	p.M118L	.	.	.
OR5T2	219464	broad.mit.edu	36	11	55757062	55757062	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004746	exon1	c.A176C	p.N59T	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55814379	55814379	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005199	exon1	c.G736T	p.G246X	.	.	.
TRIM6	117854	broad.mit.edu	36	11	5589131	5589131	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003818	exon8	c.C1534T	p.R512C	.	.	.
OR5R1	219479	broad.mit.edu	36	11	55941925	55941925	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004744	exon1	c.C360T	p.Y120Y	.	.	.
OR5M9	390162	broad.mit.edu	36	11	55987181	55987181	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004743	exon1	c.C273A	p.S91S	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55993844	55993844	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004742	exon1	c.T706A	p.F236I	.	.	.
OR5AK2	390181	broad.mit.edu	36	11	56513406	56513406	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005323	exon1	c.T442A	p.S148T	.	.	.
APLNR	187	broad.mit.edu	36	11	56760870	56760870	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005161	exon1	c.G185A	p.R62H	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5684406	5684406	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199573	exon5	c.A745T	p.I249F	.	.	.
SLC43A1	8501	broad.mit.edu	36	11	57020104	57020104	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003627	exon7	c.C668A	p.P223H	.	.	.
CLP1	10978	broad.mit.edu	36	11	57185270	57185270	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142597	exon3	c.T872C	p.V291A	.	.	.
ZDHHC5	25921	broad.mit.edu	36	11	57220058	57220058	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015457	exon9	c.T976G	p.L326V	.	.	.
OR9Q2	219957	broad.mit.edu	36	11	57715343	57715343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005283	exon1	c.G805A	p.E269K	.	.	.
MPEG1	219972	broad.mit.edu	36	11	58736876	58736876	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039396	exon1	c.G39A	p.A13A	.	.	.
OR56A3	390083	broad.mit.edu	36	11	5925703	5925703	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003443	exon1	c.C551T	p.A184V	.	.	.
CYBASC3	220002	broad.mit.edu	36	11	60878012	60878012	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161454	exon5	c.G264A	p.S88S	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62055521	62055521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G2944A	p.V982I	.	.	.
INTS5	80789	broad.mit.edu	36	11	62172338	62172338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030628	exon2	c.C1790T	p.A597V	.	.	.
CHRM1	1128	broad.mit.edu	36	11	62434190	62434190	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000738	exon2	c.G959A	p.R320Q	.	.	.
FLRT1	23769	broad.mit.edu	36	11	63641333	63641333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013280	exon2	c.C1018T	p.R340W	.	.	.
SMPD1	6609	broad.mit.edu	36	11	6369718	6369718	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007593	exon2	c.G844A	p.A282T	.	.	.
APBB1	322	broad.mit.edu	36	11	6388704	6388704	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164	exon2	c.G450T	p.E150D	.	.	.
HPX	3263	broad.mit.edu	36	11	6409545	6409545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000613	exon9	c.G1031A	p.R344Q	.	.	.
ARFIP2	23647	broad.mit.edu	36	11	6455879	6455879	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012402	exon6	c.G663A	p.T221T	.	.	.
NAALADL1	10004	broad.mit.edu	36	11	64582026	64582026	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005468	exon3	c.T377G	p.I126S	.	.	.
SYVN1	84447	broad.mit.edu	36	11	64652521	64652521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032431	exon16	c.G1760A	p.G587D	.	.	.
TIGD3	220359	broad.mit.edu	36	11	64880842	64880842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145719	exon2	c.C987T	p.A329A	.	.	.
SCYL1	57410	broad.mit.edu	36	11	65054811	65054811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048218	exon7	c.G985A	p.V329I	.	.	.
KAT5	10524	broad.mit.edu	36	11	65237049	65237049	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182710	exon3	c.A328G	p.T110A	.	.	.
SNX32	254122	broad.mit.edu	36	11	65374044	65374044	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152760	exon3	c.C219A	p.A73A	.	.	.
PACS1	55690	broad.mit.edu	36	11	65734435	65734435	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018026	exon3	c.C471T	p.N157N	.	.	.
RRP8	23378	broad.mit.edu	36	11	6579896	6579896	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015324	exon2	c.C225T	p.C75C	.	.	.
DPP3	10072	broad.mit.edu	36	11	66017171	66017171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005700	exon11	c.C1241T	p.A414V	.	.	.
ACTN3	89	broad.mit.edu	36	11	66084724	66084724	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001104	exon15	c.G1782A	p.Q594Q	.	.	.
ANKRD13D	338692	broad.mit.edu	36	11	66824148	66824148	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207354	exon10	c.G1051A	p.E351K	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6899415	6899415	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004684	exon1	c.C607T	p.L203L	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71397698	71397698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006185	exon19	c.G5021A	p.R1674H	.	.	.
PDE2A	5138	broad.mit.edu	36	11	71973364	71973364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002599	exon18	c.G1416A	p.T472T	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72074864	72074864	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040118	exon34	c.C4206A	p.P1402P	.	.	.
SLCO2B1	11309	broad.mit.edu	36	11	74554551	74554551	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007256	exon4	c.C357A	p.G119G	.	.	.
OLFML1	283298	broad.mit.edu	36	11	7487355	7487355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198474	exon3	c.C569T	p.A190V	.	.	.
CAPN5	726	broad.mit.edu	36	11	76504223	76504223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004055	exon6	c.C834T	p.D278D	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76549755	76549755	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127179	exon12	c.G1289A	p.R430H	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76580945	76580945	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000260	exon31	c.A4126G	p.K1376E	.	.	.
AQP11	282679	broad.mit.edu	36	11	76978914	76978914	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173039	exon1	c.T229C	p.W77R	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78064938	78064938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon30	c.G5403A	p.T1801T	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78097207	78097207	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon27	c.C4056A	p.G1352G	.	.	.
EIF3F	8665	broad.mit.edu	36	11	7969913	7969913	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003754	exon2	c.A374T	p.D125V	.	.	.
C11orf82	220042	broad.mit.edu	36	11	82303491	82303491	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145018	exon3	c.A63G	p.I21M	.	.	.
FZD4	8322	broad.mit.edu	36	11	86340775	86340775	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012193	exon2	c.C671A	p.A224D	.	.	.
ST5	6764	broad.mit.edu	36	11	8680805	8680805	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon17	c.G2610T	p.E870D	.	.	.
GRM5	2915	broad.mit.edu	36	11	88026063	88026063	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon4	c.A1068T	p.Q356H	.	.	.
GRM5	2915	broad.mit.edu	36	11	88420290	88420290	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon2	c.C399A	p.S133S	.	.	.
TYR	7299	broad.mit.edu	36	11	88600705	88600705	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000372	exon3	c.T1103A	p.I368N	.	.	.
NOX4	50507	broad.mit.edu	36	11	88773154	88773154	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016931	exon10	c.C888T	p.A296A	.	.	.
MTMR2	8898	broad.mit.edu	36	11	95222513	95222513	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201278	exon11	c.G750A	p.R250R	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118278308	118278308	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182557	exon6	c.1354delC	p.Q452fs	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990139	29990139	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002233	exon2	c.663delT	p.F221fs	.	.	.
OR56A4	120793	broad.mit.edu	36	11	5980467	5980467	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005179	exon1	c.488delT	p.L163X	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62051535	62051535	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001620	exon5	c.6930delC	p.P2310fs	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100535118	100535118	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002465	exon3	c.T69C	p.S23S	.	.	.
C12orf42	374470	broad.mit.edu	36	12	102220297	102220297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099336	exon6	c.G802A	p.A268T	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104058844	104058844	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015275	exon17	c.G1598A	p.R533H	.	.	.
KLRC3	3823	broad.mit.edu	36	12	10479211	10479211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002260	exon2	c.G253A	p.A85T	.	.	.
NUAK1	9891	broad.mit.edu	36	12	104990670	104990670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014840	exon5	c.C661T	p.P221S	.	.	.
RFX4	5992	broad.mit.edu	36	12	105572214	105572214	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213594	exon4	c.C270T	p.C90C	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106535331	106535331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017523	exon7	c.C830T	p.A277V	.	.	.
PRDM4	11108	broad.mit.edu	36	12	106662538	106662538	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012406	exon7	c.G1307T	p.R436L	.	.	.
SSH1	54434	broad.mit.edu	36	12	107706039	107706039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018984	exon15	c.G3004A	p.A1002T	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108365727	108365727	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101421	exon27	c.A2666G	p.D889G	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108941411	108941411	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033121	exon6	c.G629A	p.R210H	.	.	.
ATXN2	6311	broad.mit.edu	36	12	110438422	110438422	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002973	exon10	c.C1774T	p.P592S	.	.	.
TAS2R46	259292	broad.mit.edu	36	12	11105527	11105527	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176887	exon1	c.C634A	p.H212N	.	.	.
TRAFD1	10906	broad.mit.edu	36	12	111064437	111064437	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006700	exon6	c.G805A	p.A269T	.	.	.
TAS2R30	259293	broad.mit.edu	36	12	11177287	11177287	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097643	exon1	c.A824G	p.H275R	.	.	.
RASAL1	8437	broad.mit.edu	36	12	112027911	112027911	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004658	exon17	c.T1818C	p.P606P	.	.	.
DDX54	79039	broad.mit.edu	36	12	112101390	112101390	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024072	exon4	c.G505A	p.A169T	.	.	.
TBX5	6910	broad.mit.edu	36	12	113325975	113325975	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000192	exon2	c.T112C	p.S38P	.	.	.
ERC1	23085	broad.mit.edu	36	12	1169334	1169334	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178039	exon11	c.C2122T	p.R708X	.	.	.
TAOK3	51347	broad.mit.edu	36	12	117084170	117084170	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016281	exon18	c.C1945T	p.L649L	.	.	.
CCDC64	92558	broad.mit.edu	36	12	118920867	118920867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207311	exon2	c.C589T	p.R197W	.	.	.
HNF1A	6927	broad.mit.edu	36	12	119921563	119921563	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000545	exon8	c.G1611A	p.T537T	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120432032	120432032	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032590	exon11	c.C1368A	p.A456A	.	.	.
CCDC62	84660	broad.mit.edu	36	12	121852165	121852165	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201435	exon9	c.G1519A	p.E507K	.	.	.
PITPNM2	57605	broad.mit.edu	36	12	122064462	122064462	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020845	exon3	c.C159T	p.G53G	.	.	.
TCTN2	79867	broad.mit.edu	36	12	122722056	122722056	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024809	exon2	c.C132T	p.S44S	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124701417	124701417	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052907	exon7	c.C1864G	p.L622V	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128260068	128260068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon5	c.G1393A	p.E465K	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129492975	129492975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015347	exon8	c.C824T	p.A275V	.	.	.
GPR133	283383	broad.mit.edu	36	12	130005131	130005131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198827	exon2	c.G76A	p.V26I	.	.	.
EP400	57634	broad.mit.edu	36	12	131120058	131120058	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon51	c.C8937A	p.A2979A	.	.	.
CHFR	55743	broad.mit.edu	36	12	131933702	131933702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018223	exon15	c.G1648T	p.D550Y	.	.	.
ERC1	23085	broad.mit.edu	36	12	1351296	1351296	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178039	exon15	c.C2733T	p.D911D	.	.	.
MGST1	4257	broad.mit.edu	36	12	16408082	16408082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145764	exon4	c.C308T	p.A103V	.	.	.
RERGL	79785	broad.mit.edu	36	12	18128736	18128736	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024730	exon5	c.A317G	p.Q106R	.	.	.
AEBP2	121536	broad.mit.edu	36	12	19517493	19517493	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153207	exon3	c.A924T	p.P308P	.	.	.
CMAS	55907	broad.mit.edu	36	12	22099442	22099442	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018686	exon2	c.A353T	p.D118V	.	.	.
SOX5	6660	broad.mit.edu	36	12	23890237	23890237	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152989	exon6	c.T389C	p.V130A	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
ITPR2	3709	broad.mit.edu	36	12	26622935	26622935	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon34	c.T4608C	p.C1536C	.	.	.
FOXM1	2305	broad.mit.edu	36	12	2838640	2838640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_202003	exon8	c.G1672A	p.A558T	.	.	.
KDM5A	5927	broad.mit.edu	36	12	287045	287045	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon23	c.T3766C	p.W1256R	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29601114	29601114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193451	exon10	c.C1619T	p.A540V	.	.	.
DDX11	1663	broad.mit.edu	36	12	31145234	31145234	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004399	exon20	c.T1955C	p.V652A	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32026198	32026198	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018169	exon4	c.C1042T	p.Q348X	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000438	37000438	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013620	exon3	c.C578T	p.A193V	.	.	.
ABCD2	225	broad.mit.edu	36	12	38299012	38299012	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005164	exon1	c.T673C	p.Y225H	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39002237	39002237	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon36	c.T5304G	p.P1768P	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39609879	39609879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175038	exon6	c.C478T	p.R160C	.	.	.
CCDC77	84318	broad.mit.edu	36	12	411321	411321	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130148	exon6	c.G516A	p.S172S	.	.	.
NELL2	4753	broad.mit.edu	36	12	43459763	43459763	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145108	exon5	c.G556T	p.G186C	.	.	.
ARID2	196528	broad.mit.edu	36	12	44497822	44497822	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152641	exon5	c.A521G	p.D174G	.	.	.
ARID2	196528	broad.mit.edu	36	12	44532125	44532125	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152641	exon15	c.C3952T	p.Q1318X	.	.	.
DYRK4	8798	broad.mit.edu	36	12	4570715	4570715	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003845	exon3	c.G108A	p.L36L	.	.	.
TMEM106C	79022	broad.mit.edu	36	12	46645382	46645382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024056	exon3	c.C238T	p.R80C	.	.	.
ANP32D	23519	broad.mit.edu	36	12	47153091	47153091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012404	exon1	c.C377T	p.T126I	.	.	.
DDX23	9416	broad.mit.edu	36	12	47511340	47511340	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004818	exon16	c.A2091G	p.G697G	.	.	.
MLL2	8085	broad.mit.edu	36	12	47722238	47722238	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon28	c.C6010T	p.Q2004X	.	.	.
PRPH	5630	broad.mit.edu	36	12	47976945	47976945	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006262	exon4	c.C709T	p.R237X	.	.	.
TROAP	10024	broad.mit.edu	36	12	48010541	48010541	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005480	exon13	c.C1646A	p.P549H	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50466700	50466700	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014191	exon22	c.G4050A	p.A1350A	.	.	.
KRT1	3848	broad.mit.edu	36	12	51360301	51360301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006121	exon1	c.C99T	p.S33S	.	.	.
MFSD5	84975	broad.mit.edu	36	12	51933404	51933404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032889	exon2	c.G518A	p.R173Q	.	.	.
ESPL1	9700	broad.mit.edu	36	12	51956756	51956756	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012291	exon8	c.C1786T	p.R596W	.	.	.
PFDN5	5204	broad.mit.edu	36	12	51977943	51977943	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145897	exon2	c.A115G	p.I39V	.	.	.
LACRT	90070	broad.mit.edu	36	12	53312367	53312367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033277	exon3	c.G178A	p.A60T	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53646139	53646139	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon7	c.C411T	p.S137S	.	.	.
NEUROD4	58158	broad.mit.edu	36	12	53706986	53706986	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021191	exon2	c.A496G	p.T166A	.	.	.
RPS26	6231	broad.mit.edu	36	12	54723445	54723445	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029	exon3	c.A213G	p.L71L	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54780018	54780018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001982	exon25	c.G3067A	p.A1023T	.	.	.
NACA	4666	broad.mit.edu	36	12	55399623	55399623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113203	exon3	c.C1958T	p.A653V	.	.	.
RDH16	8608	broad.mit.edu	36	12	55632195	55632195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003708	exon4	c.G839A	p.R280H	.	.	.
ZBTB39	9880	broad.mit.edu	36	12	55684062	55684062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014830	exon2	c.G907A	p.D303N	.	.	.
DCTN2	10540	broad.mit.edu	36	12	56214038	56214038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006400	exon7	c.C635T	p.S212L	.	.	.
ARHGEF25	115557	broad.mit.edu	36	12	56293790	56293790	+	Missense_Mutation	SNP	G	A	A	rs61935728	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111270	exon6	c.G649A	p.D217N	.	.	.
B4GALNT1	2583	broad.mit.edu	36	12	56311105	56311105	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001478	exon4	c.G415T	p.A139S	.	.	.
AVIL	10677	broad.mit.edu	36	12	56483646	56483646	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006576	exon14	c.T1745C	p.V582A	.	.	.
VWF	7450	broad.mit.edu	36	12	6054967	6054967	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000552	exon7	c.G669T	p.E223D	.	.	.
AVPR1A	552	broad.mit.edu	36	12	61830748	61830748	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000706	exon1	c.C136T	p.R46C	.	.	.
XPOT	11260	broad.mit.edu	36	12	63100511	63100511	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007235	exon8	c.A786G	p.K262K	.	.	.
TBK1	29110	broad.mit.edu	36	12	63164523	63164523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013254	exon9	c.C1166T	p.T389I	.	.	.
SCNN1A	6337	broad.mit.edu	36	12	6333895	6333895	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159576	exon7	c.T1507C	p.Y503H	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63850895	63850895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014319	exon1	c.G1252A	p.A418T	.	.	.
CHD4	1108	broad.mit.edu	36	12	6570893	6570893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon22	c.G3340A	p.A1114T	.	.	.
CHD4	1108	broad.mit.edu	36	12	6573014	6573014	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon16	c.C2343T	p.S781S	.	.	.
PTMS	5763	broad.mit.edu	36	12	6749603	6749603	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002824	exon4	c.G216T	p.E72D	.	.	.
CPM	1368	broad.mit.edu	36	12	67547062	67547062	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198320	exon7	c.A821G	p.Q274R	.	.	.
CPSF6	11052	broad.mit.edu	36	12	67931212	67931212	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007007	exon2	c.T97C	p.Y33H	.	.	.
C1R	715	broad.mit.edu	36	12	7058814	7058814	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001733	exon8	c.C1089T	p.I363I	.	.	.
TBC1D15	64786	broad.mit.edu	36	12	70603062	70603062	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146214	exon18	c.G1860A	p.G620G	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7177484	7177484	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014718	exon3	c.C236T	p.A79V	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7440069	7440069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174941	exon8	c.C1939T	p.L647F	.	.	.
BBS10	79738	broad.mit.edu	36	12	75264666	75264666	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024685	exon2	c.T1230C	p.H410H	.	.	.
E2F7	144455	broad.mit.edu	36	12	75943791	75943791	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203394	exon12	c.T2243A	p.L748X	.	.	.
NAV3	89795	broad.mit.edu	36	12	77117302	77117302	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon36	c.T6509G	p.L2170R	.	.	.
CCDC59	29080	broad.mit.edu	36	12	81275038	81275038	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014167	exon2	c.C296A	p.A99D	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84042092	84042092	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon17	c.A3671C	p.K1224T	.	.	.
CEP290	80184	broad.mit.edu	36	12	87004355	87004355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon33	c.C4246T	p.R1416C	.	.	.
TMTC3	160418	broad.mit.edu	36	12	87090604	87090604	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181783	exon8	c.G1150T	p.G384W	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88573789	88573789	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon1	c.C6T	p.G2G	.	.	.
PHC1	1911	broad.mit.edu	36	12	8965488	8965488	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004426	exon5	c.G331A	p.A111T	.	.	.
KERA	11081	broad.mit.edu	36	12	89973574	89973574	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007035	exon2	c.A616G	p.N206D	.	.	.
PZP	5858	broad.mit.edu	36	12	9201070	9201070	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon28	c.T3518C	p.L1173P	.	.	.
FGD6	55785	broad.mit.edu	36	12	94127225	94127225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018351	exon2	c.G1966T	p.D656Y	.	.	.
IKBIP	121457	broad.mit.edu	36	12	97544330	97544330	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153687	exon3	c.A643T	p.T215S	.	.	.
APAF1	317	broad.mit.edu	36	12	97589490	97589490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon12	c.G1622A	p.G541E	.	.	.
CLECL1	160365	broad.mit.edu	36	12	9776890	9776890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172004	exon1	c.G238A	p.A80T	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	98966024	98966024	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015054	exon18	c.T3800C	p.I1267T	.	.	.
ACTR6	64431	broad.mit.edu	36	12	99122942	99122942	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022496	exon2	c.C162A	p.L54L	.	.	.
NAA25	80018	broad.mit.edu	36	12	110951765	110951765	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024953	exon24	c.2872delG	p.E958fs	.	.	.
ZNF84	7637	broad.mit.edu	36	12	132145579	132145579	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127372	exon5	c.2205delA	p.V735fs	.	.	.
RECQL	5965	broad.mit.edu	36	12	21535814	21535814	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032941	exon4	c.120delA	p.K40fs	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50665388	50665388	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020327	exon6	c.969delG	p.V323fs	.	.	.
CYP27B1	1594	broad.mit.edu	36	12	56443753	56443753	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000785	exon8	c.1321delC	p.H441fs	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70325048	70325048	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144982	exon4	c.1155delA	p.K385fs	.	.	.
E2F7	144455	broad.mit.edu	36	12	75973958	75973958	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203394	exon3	c.177delA	p.K59fs	.	.	.
EEA1	8411	broad.mit.edu	36	12	91769045	91769045	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003566	exon9	c.771delA	p.K257fs	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93216656	93216656	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005761	exon27	c.4192delA	p.K1398fs	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43854119	43854119	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NALCN	259232	broad.mit.edu	36	13	100534068	100534068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon31	c.G3578A	p.R1193H	.	.	.
NALCN	259232	broad.mit.edu	36	13	100595151	100595151	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon16	c.T1937C	p.I646T	.	.	.
FGF14	2259	broad.mit.edu	36	13	101173234	101173234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175929	exon5	c.C707T	p.A236V	.	.	.
MYO16	23026	broad.mit.edu	36	13	108116425	108116425	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon2	c.G219A	p.A73A	.	.	.
MYO16	23026	broad.mit.edu	36	13	108551184	108551184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon28	c.C3386T	p.A1129V	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112222254	112222254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006322	exon15	c.G1828A	p.A610T	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112224724	112224724	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006322	exon14	c.G1656C	p.K552N	.	.	.
TFDP1	7027	broad.mit.edu	36	13	113336917	113336917	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007111	exon8	c.A686G	p.Q229R	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18649492	18649492	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006001	exon4	c.G631T	p.D211Y	.	.	.
IFT88	8100	broad.mit.edu	36	13	20103194	20103194	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175605	exon18	c.A1366G	p.R456G	.	.	.
SACS	26278	broad.mit.edu	36	13	22813617	22813617	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.A2398T	p.M800L	.	.	.
PARP4	143	broad.mit.edu	36	13	23958375	23958375	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon11	c.G1283T	p.S428I	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24379072	24379072	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon7	c.A1104G	p.K368K	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24379280	24379280	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon6	c.A1026T	p.L342F	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24568521	24568521	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030979	exon1	c.C185G	p.T62R	.	.	.
MTMR6	9107	broad.mit.edu	36	13	24733855	24733855	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004685	exon6	c.A677T	p.K226I	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25247086	25247086	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon27	c.T2668C	p.Y890H	.	.	.
PRHOXNB	646625	broad.mit.edu	36	13	27460713	27460713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105577	exon1	c.C62T	p.A21V	.	.	.
FLT1	2321	broad.mit.edu	36	13	27877994	27877994	+	Missense_Mutation	SNP	G	C	C	rs55675306	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon11	c.C1474G	p.L492V	.	.	.
BRCA2	675	broad.mit.edu	36	13	31808987	31808987	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000059	exon11	c.A2495G	p.E832G	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32179086	32179086	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon18	c.A1872G	p.Q624Q	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109653	37109653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135956	exon10	c.C2126T	p.S709L	.	.	.
ELF1	1997	broad.mit.edu	36	13	40413153	40413153	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172373	exon8	c.A1160G	p.H387R	.	.	.
NAA16	79612	broad.mit.edu	36	13	40841362	40841362	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024561	exon15	c.A1890T	p.E630D	.	.	.
RB1	5925	broad.mit.edu	36	13	47931854	47931854	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon20	c.A1990G	p.T664A	.	.	.
INTS6	26512	broad.mit.edu	36	13	50848277	50848277	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012141	exon13	c.A1637G	p.D546G	.	.	.
ATP7B	540	broad.mit.edu	36	13	51440683	51440683	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000053	exon4	c.G1605T	p.E535D	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57104916	57104916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon1	c.G235A	p.A79T	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57106695	57106695	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon1	c.A2014G	p.T672A	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57197137	57197137	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon4	c.C3188A	p.A1063D	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699991	66699991	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020403	exon2	c.A583C	p.T195P	.	.	.
C13orf34	79866	broad.mit.edu	36	13	72219162	72219162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024808	exon10	c.G1394A	p.G465D	.	.	.
LMO7	4008	broad.mit.edu	36	13	75325280	75325280	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015842	exon25	c.G3717A	p.Q1239Q	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76524054	76524054	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon81	c.G13648A	p.A4550T	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83351882	83351882	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052910	exon1	c.A1762G	p.T588A	.	.	.
DCT	1638	broad.mit.edu	36	13	93929318	93929318	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001922	exon1	c.C193G	p.R65G	.	.	.
CLDN10	9071	broad.mit.edu	36	13	94884219	94884219	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160100	exon1	c.A131G	p.Y44C	.	.	.
IPO5	3843	broad.mit.edu	36	13	97453239	97453239	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002271	exon16	c.T1498C	p.L500L	.	.	.
CLYBL	171425	broad.mit.edu	36	13	99321208	99321208	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206808	exon7	c.A818G	p.H273R	.	.	.
PCCA	5095	broad.mit.edu	36	13	99875941	99875941	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178004	exon20	c.G1800A	p.S600S	.	.	.
CUL4A	8451	broad.mit.edu	36	13	112947323	112947324	+	Frame_Shift_Del	DEL	AA	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008895	exon13	c.1393_1394del	p.465_465del	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18649694	18649694	+	Frame_Shift_Del	DEL	A	-	-	rs9507567	byCluster;byFrequency;byHapMap	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			Illumina HiSeq	NM_006001	exon4	c.429delT	p.G143fs	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19536677	19536677	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_197968	exon19	c.3124delA	p.K1042fs	.	.	.
LECT1	11061	broad.mit.edu	36	13	52211767	52211767	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011705	exon1	c.71delC	p.P24fs	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102433378	102433379	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199427	exon6	c.598_599insA	p.E200fs	.	.	.
DLK1	8788	broad.mit.edu	36	14	100270286	100270286	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003836	exon5	c.C452T	p.A151V	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101531295	101531295	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon15	c.T3469G	p.S1157A	.	.	.
AKT1	207	broad.mit.edu	36	14	104310324	104310324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014432	exon12	c.C1108T	p.R370C	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104480083	104480083	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.G12750A	p.A4250A	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104482296	104482296	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.C10537T	p.Q3513X	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104485362	104485362	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.C7471T	p.P2491S	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104490627	104490627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.G2206A	p.D736N	.	.	.
OR4N2	390429	broad.mit.edu	36	14	19365820	19365820	+	Missense_Mutation	SNP	G	A	A	rs4060171	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004723	exon1	c.G373A	p.A125T	.	.	.
OR4K15	81127	broad.mit.edu	36	14	19513939	19513939	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005486	exon1	c.C422T	p.S141F	.	.	.
TEP1	7011	broad.mit.edu	36	14	19909563	19909563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007110	exon50	c.G7145A	p.G2382D	.	.	.
APEX1	328	broad.mit.edu	36	14	19994809	19994809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080648	exon4	c.G389A	p.G130D	.	.	.
ARHGEF40	55701	broad.mit.edu	36	14	20616226	20616226	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018071	exon9	c.G2085T	p.R695R	.	.	.
OR5AU1	390445	broad.mit.edu	36	14	20693090	20693090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004731	exon1	c.G935A	p.R312H	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20863902	20863902	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020366	exon16	c.C2440T	p.R814X	.	.	.
TOX4	9878	broad.mit.edu	36	14	21030643	21030643	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014828	exon7	c.T1028C	p.V343A	.	.	.
OXA1L	5018	broad.mit.edu	36	14	22305616	22305616	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005015	exon1	c.G46T	p.A16S	.	.	.
C14orf93	60686	broad.mit.edu	36	14	22535159	22535159	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130708	exon3	c.G756T	p.E252D	.	.	.
TSSK4	283629	broad.mit.edu	36	14	23745723	23745723	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174944	exon2	c.C394A	p.L132M	.	.	.
GMPR2	51292	broad.mit.edu	36	14	23775088	23775088	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016576	exon4	c.G421A	p.V141M	.	.	.
TGM1	7051	broad.mit.edu	36	14	23794212	23794212	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000359	exon12	c.A1733G	p.D578G	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23950193	23950193	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025081	exon5	c.A2486G	p.H829R	.	.	.
SSTR1	6751	broad.mit.edu	36	14	37748754	37748754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001049	exon3	c.G409A	p.D137N	.	.	.
PNN	5411	broad.mit.edu	36	14	38719588	38719588	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002687	exon9	c.A924C	p.E308D	.	.	.
FSCB	84075	broad.mit.edu	36	14	44043801	44043801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032135	exon1	c.G2140A	p.V714I	.	.	.
FANCM	57697	broad.mit.edu	36	14	44706086	44706086	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020937	exon11	c.C1972T	p.R658X	.	.	.
ATL1	51062	broad.mit.edu	36	14	50157131	50157131	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181598	exon9	c.C927A	p.S309R	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54707217	54707217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146015	exon11	c.G1343A	p.C448Y	.	.	.
DAAM1	23002	broad.mit.edu	36	14	58900201	58900201	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014992	exon24	c.C2804A	p.A935D	.	.	.
RTN1	6252	broad.mit.edu	36	14	59143943	59143943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021136	exon4	c.C1786T	p.R596W	.	.	.
PPM1A	5494	broad.mit.edu	36	14	59819200	59819200	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021003	exon2	c.A26C	p.K9T	.	.	.
PPM1A	5494	broad.mit.edu	36	14	59819517	59819517	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021003	exon2	c.A343G	p.M115V	.	.	.
SYT16	83851	broad.mit.edu	36	14	61617618	61617618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031914	exon4	c.G1307A	p.R436H	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63523081	63523081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon19	c.C2306T	p.S769F	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63601979	63601979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon51	c.G10289T	p.R3430M	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63758125	63758125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182913	exon7	c.G1084A	p.D362N	.	.	.
AKAP5	9495	broad.mit.edu	36	14	64005423	64005423	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004857	exon2	c.C558T	p.I186I	.	.	.
RDH11	51109	broad.mit.edu	36	14	67214821	67214821	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016026	exon7	c.T927C	p.S309S	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69994620	69994620	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003813	exon1	c.C651T	p.N217N	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71160581	71160581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015556	exon4	c.G1693A	p.A565T	.	.	.
RBM25	58517	broad.mit.edu	36	14	72639824	72639824	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021239	exon10	c.C1039T	p.R347W	.	.	.
ALDH6A1	4329	broad.mit.edu	36	14	73608678	73608678	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005589	exon4	c.A329C	p.Q110P	.	.	.
VRTN	55237	broad.mit.edu	36	14	73894449	73894449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018228	exon2	c.C1210T	p.R404W	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74039765	74039765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000428	exon33	c.C4798T	p.R1600C	.	.	.
ESRRB	2103	broad.mit.edu	36	14	76034488	76034488	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004452	exon9	c.C1236T	p.S412S	.	.	.
ADCK1	57143	broad.mit.edu	36	14	77467726	77467726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142545	exon9	c.G1115A	p.G372D	.	.	.
GALC	2581	broad.mit.edu	36	14	87470956	87470956	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000153	exon17	c.T1931A	p.M644K	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88016191	88016191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007039	exon13	c.G1337A	p.R446H	.	.	.
ZC3H14	79882	broad.mit.edu	36	14	88143442	88143442	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160104	exon13	c.A1835G	p.H612R	.	.	.
EML5	161436	broad.mit.edu	36	14	88193530	88193530	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon27	c.G3947A	p.R1316H	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90435488	90435488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004755	exon12	c.G1411A	p.A471T	.	.	.
TC2N	123036	broad.mit.edu	36	14	91328466	91328466	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128596	exon9	c.T1045C	p.S349P	.	.	.
SLC24A4	123041	broad.mit.edu	36	14	92018862	92018862	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153646	exon13	c.C1341T	p.P447P	.	.	.
RIN3	79890	broad.mit.edu	36	14	92195393	92195393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024832	exon7	c.G2161A	p.A721T	.	.	.
AK7	122481	broad.mit.edu	36	14	95987555	95987555	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152327	exon10	c.G993A	p.A331A	.	.	.
AK7	122481	broad.mit.edu	36	14	96023071	96023071	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152327	exon17	c.C2058A	p.T686T	.	.	.
OSGEP	55644	broad.mit.edu	36	14	19990374	19990375	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017807	exon2	c.188_189del	p.63_63del	.	.	.
C14orf39	317761	broad.mit.edu	36	14	59973318	59973318	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174978	exon18	c.1762delT	p.X588E	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92830946	92830946	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018167	exon3	c.173delA	p.K58fs	.	.	.
TARSL2	123283	broad.mit.edu	36	15	100029295	100029295	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152334	exon15	c.G1884T	p.K628N	.	.	.
OR4M2	390538	broad.mit.edu	36	15	19870478	19870478	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004719	exon1	c.A539G	p.D180G	.	.	.
OR4N4	283694	broad.mit.edu	36	15	19883987	19883987	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005241	exon1	c.T151C	p.S51P	.	.	.
NIPA2	81614	broad.mit.edu	36	15	20557804	20557804	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008860	exon7	c.G941A	p.R314Q	.	.	.
MKRN3	7681	broad.mit.edu	36	15	21362376	21362376	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005664	exon1	c.G354A	p.S118S	.	.	.
NDN	4692	broad.mit.edu	36	15	21482773	21482773	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002487	exon1	c.G685T	p.G229W	.	.	.
SNRPN	6638	broad.mit.edu	36	15	22771617	22771617	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022807	exon8	c.A23G	p.K8R	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23152213	23152213	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130839	exon9	c.G2043T	p.Q681H	.	.	.
OCA2	4948	broad.mit.edu	36	15	25876345	25876345	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000275	exon16	c.C1768T	p.L590L	.	.	.
HERC2	8924	broad.mit.edu	36	15	26093276	26093276	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon65	c.T9917G	p.L3306X	.	.	.
HERC2	8924	broad.mit.edu	36	15	26149195	26149195	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004667	exon31	c.C4722T	p.N1574N	.	.	.
TJP1	7082	broad.mit.edu	36	15	27851585	27851585	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175610	exon4	c.A286T	p.R96W	.	.	.
ARHGAP11B	89839	broad.mit.edu	36	15	28713720	28713720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039841	exon4	c.C353T	p.A118V	.	.	.
FAN1	22909	broad.mit.edu	36	15	28987672	28987672	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146095	exon3	c.A1294G	p.T432A	.	.	.
OTUD7A	161725	broad.mit.edu	36	15	29638677	29638677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130901	exon3	c.C337T	p.R113W	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30709215	30709215	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199357	exon8	c.G1065A	p.L355L	.	.	.
RYR3	6263	broad.mit.edu	36	15	31659572	31659572	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon13	c.C1372T	p.R458X	.	.	.
RYR3	6263	broad.mit.edu	36	15	31743102	31743102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon36	c.G5491A	p.D1831N	.	.	.
PGBD4	161779	broad.mit.edu	36	15	32183668	32183668	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152595	exon1	c.C1644T	p.Y548Y	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32340493	32340493	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042497	exon2	c.C292T	p.R98X	.	.	.
C15orf55	256646	broad.mit.edu	36	15	32430255	32430255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175741	exon3	c.C784T	p.P262S	.	.	.
THBS1	7057	broad.mit.edu	36	15	37670036	37670036	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon14	c.G2173T	p.G725W	.	.	.
MGA	23269	broad.mit.edu	36	15	39845707	39845707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164273	exon24	c.C8135T	p.T2712M	.	.	.
UBR1	197131	broad.mit.edu	36	15	41100850	41100850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174916	exon27	c.C2855T	p.A952V	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41486904	41486904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005657	exon28	c.C5888T	p.P1963L	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43186358	43186358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014080	exon15	c.G1795A	p.A599T	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43222765	43222765	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017434	exon17	c.G1908A	p.V636V	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46354097	46354097	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184832	exon20	c.A2440G	p.R814G	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46371344	46371344	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184832	exon24	c.A2951C	p.N984T	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53439802	53439802	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004748	exon8	c.T1461C	p.G487G	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53457802	53457802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004748	exon4	c.C240T	p.S80S	.	.	.
ZNF280D	54816	broad.mit.edu	36	15	54786594	54786594	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017661	exon3	c.C6T	p.G2G	.	.	.
LIPC	3990	broad.mit.edu	36	15	56627829	56627829	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000236	exon6	c.C817A	p.Q273K	.	.	.
RNF111	54778	broad.mit.edu	36	15	57110559	57110559	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017610	exon2	c.G246A	p.Q82Q	.	.	.
MYO1E	4643	broad.mit.edu	36	15	57257895	57257895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004998	exon19	c.G2038A	p.A680T	.	.	.
TLN2	83660	broad.mit.edu	36	15	60772376	60772376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015059	exon10	c.G1159A	p.E387K	.	.	.
IGDCC3	9543	broad.mit.edu	36	15	63412653	63412653	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004884	exon6	c.T977G	p.V326G	.	.	.
DPP8	54878	broad.mit.edu	36	15	63580098	63580098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017743	exon4	c.G445A	p.G149R	.	.	.
SLC24A1	9187	broad.mit.edu	36	15	63733350	63733350	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004727	exon10	c.C3180T	p.C1060C	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63821130	63821130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon5	c.C608T	p.T203M	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64400049	64400049	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143688	exon9	c.C1251T	p.I417I	.	.	.
RPL4	6124	broad.mit.edu	36	15	64582888	64582888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000968	exon2	c.G37A	p.E13K	.	.	.
IQCH	64799	broad.mit.edu	36	15	65451767	65451767	+	Missense_Mutation	SNP	T	C	C	rs34599707	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031715	exon9	c.T1018C	p.Y340H	.	.	.
SKOR1	390598	broad.mit.edu	36	15	65913168	65913168	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031807	exon10	c.G2706A	p.K902K	.	.	.
PIAS1	8554	broad.mit.edu	36	15	66253155	66253155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016166	exon9	c.G1040A	p.R347Q	.	.	.
ITGA11	22801	broad.mit.edu	36	15	66444165	66444165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004439	exon4	c.C291T	p.S97S	.	.	.
NOX5	79400	broad.mit.edu	36	15	67115273	67115273	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184779	exon7	c.G1047C	p.L349L	.	.	.
KIF23	9493	broad.mit.edu	36	15	67519706	67519706	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004856	exon17	c.T1893C	p.R631R	.	.	.
CT62	196993	broad.mit.edu	36	15	69191570	69191570	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102658	exon3	c.T106C	p.S36P	.	.	.
GRAMD2	196996	broad.mit.edu	36	15	70241737	70241737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012642	exon11	c.C992T	p.A331V	.	.	.
PML	5371	broad.mit.edu	36	15	72123654	72123654	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033238	exon9	c.G1901T	p.S634I	.	.	.
MAN2C1	4123	broad.mit.edu	36	15	73437672	73437672	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006715	exon21	c.G2470A	p.A824T	.	.	.
UBE2Q2	92912	broad.mit.edu	36	15	73948403	73948403	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145335	exon4	c.T396C	p.A132A	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75693809	75693809	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032808	exon2	c.G1495A	p.A499T	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75694109	75694109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032808	exon2	c.C1195T	p.P399S	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76253835	76253835	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199377	exon12	c.G1777A	p.A593T	.	.	.
PSMA4	5685	broad.mit.edu	36	15	76628300	76628300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102668	exon8	c.C532T	p.R178C	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77052729	77052729	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002891	exon26	c.G3631A	p.G1211S	.	.	.
ZFAND6	54469	broad.mit.edu	36	15	78210599	78210599	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019006	exon6	c.G387A	p.Q129Q	.	.	.
IL16	3603	broad.mit.edu	36	15	79388125	79388125	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172128	exon19	c.A3927T	p.G1309G	.	.	.
TM6SF1	53346	broad.mit.edu	36	15	81575603	81575603	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023003	exon3	c.T199C	p.Y67H	.	.	.
BNC1	646	broad.mit.edu	36	15	81722743	81722743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon4	c.G2264A	p.C755Y	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83142569	83142569	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014630	exon7	c.T2596C	p.C866R	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83171816	83171816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020778	exon3	c.G886A	p.V296I	.	.	.
AKAP13	11214	broad.mit.edu	36	15	83877923	83877923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006738	exon4	c.G286A	p.A96T	.	.	.
AKAP13	11214	broad.mit.edu	36	15	83925344	83925344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006738	exon7	c.C3041T	p.A1014V	.	.	.
KLHL25	64410	broad.mit.edu	36	15	84113828	84113828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022480	exon2	c.C218T	p.A73V	.	.	.
AEN	64782	broad.mit.edu	36	15	86973523	86973523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022767	exon3	c.G603A	p.A201A	.	.	.
ACAN	176	broad.mit.edu	36	15	87183158	87183158	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135	exon3	c.G331T	p.A111S	.	.	.
MESP2	145873	broad.mit.edu	36	15	88122308	88122308	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039958	exon2	c.T933A	p.S311S	.	.	.
IDH2	3418	broad.mit.edu	36	15	88428539	88428539	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002168	exon11	c.T1322C	p.I441T	.	.	.
MAN2A2	4122	broad.mit.edu	36	15	89254746	89254746	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006122	exon10	c.T1589C	p.V530A	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92802383	92802383	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159643	exon17	c.A2099G	p.K700R	.	.	.
NR2F2	7026	broad.mit.edu	36	15	94681722	94681722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145155	exon3	c.G713A	p.R238H	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99426498	99426498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon34	c.C5970T	p.G1990G	.	.	.
ULK3	25989	broad.mit.edu	36	15	72919973	72919973	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099436	exon5	c.532delC	p.L178fs	.	.	.
ZNF843	283933	broad.mit.edu	36	16	31355656	31355657	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136509	exon2	c.16_17insC	p.F6fs	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	10181591	10181591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon2	c.C179T	p.A60V	.	.	.
CIITA	4261	broad.mit.edu	36	16	10924626	10924626	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000246	exon19	c.C3358A	p.L1120M	.	.	.
MYH11	4629	broad.mit.edu	36	16	15726256	15726256	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon30	c.A3974G	p.Q1325R	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16126264	16126264	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019862	exon24	c.C3531G	p.Y1177X	.	.	.
PDILT	204474	broad.mit.edu	36	16	20278215	20278215	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174924	exon12	c.T1682A	p.V561E	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20883676	20883676	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon53	c.G9031A	p.A3011T	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20940907	20940907	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon40	c.T5663C	p.M1888T	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20981444	20981444	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon25	c.C3580T	p.R1194X	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21064852	21064852	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon2	c.C176A	p.P59H	.	.	.
MLST8	64223	broad.mit.edu	36	16	2197076	2197076	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199174	exon5	c.C384T	p.N128N	.	.	.
HS3ST2	9956	broad.mit.edu	36	16	22833928	22833928	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006043	exon2	c.G648A	p.T216T	.	.	.
USP31	57478	broad.mit.edu	36	16	23005990	23005990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020718	exon9	c.C1546T	p.R516C	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23105250	23105250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039	exon2	c.C157T	p.R53C	.	.	.
ARHGAP17	55114	broad.mit.edu	36	16	24868277	24868277	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006634	exon13	c.A1076G	p.D359G	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2755615	2755615	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016333	exon11	c.G5085T	p.P1695P	.	.	.
TUFM	7284	broad.mit.edu	36	16	28762889	28762889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003321	exon8	c.C957T	p.A319A	.	.	.
SPNS1	83985	broad.mit.edu	36	16	28903038	28903038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142449	exon10	c.G1282A	p.E428K	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29815694	29815694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114100	exon3	c.C461T	p.T154M	.	.	.
MMP25	64386	broad.mit.edu	36	16	3047317	3047317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022468	exon6	c.G844A	p.A282T	.	.	.
BCKDK	10295	broad.mit.edu	36	16	31031044	31031044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005881	exon12	c.G1196A	p.R399Q	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31243567	31243567	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000632	exon18	c.T2252C	p.V751A	.	.	.
C16orf58	64755	broad.mit.edu	36	16	31418150	31418150	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022744	exon5	c.A574T	p.T192S	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834312	31834312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon4	c.G1241A	p.G414D	.	.	.
SLX4	84464	broad.mit.edu	36	16	3579301	3579301	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.G4339T	p.G1447C	.	.	.
SLX4	84464	broad.mit.edu	36	16	3596683	3596683	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon3	c.G553T	p.D185Y	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3719830	3719830	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004380	exon31	c.A5219G	p.H1740R	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3721279	3721279	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon30	c.A5087G	p.H1696R	.	.	.
NETO2	81831	broad.mit.edu	36	16	45719960	45719960	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018092	exon4	c.G258A	p.L86L	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48228729	48228729	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015069	exon5	c.T1835C	p.V612A	.	.	.
RHBDF1	64285	broad.mit.edu	36	16	48713	48713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022450	exon18	c.G2194A	p.V732M	.	.	.
ADCY7	113	broad.mit.edu	36	16	48906515	48906515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114	exon24	c.C3061T	p.R1021X	.	.	.
NAGPA	51172	broad.mit.edu	36	16	5015527	5015527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016256	exon10	c.G1501A	p.A501T	.	.	.
MT1A	4489	broad.mit.edu	36	16	55230720	55230720	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005946	exon2	c.C72T	p.C24C	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55464073	55464073	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000339	exon8	c.C969T	p.D323D	.	.	.
HERPUD1	9709	broad.mit.edu	36	16	55531639	55531639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014685	exon6	c.G886A	p.A296T	.	.	.
CCDC102A	92922	broad.mit.edu	36	16	56104210	56104210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033212	exon9	c.G1597A	p.E533K	.	.	.
ZNF319	57567	broad.mit.edu	36	16	56588973	56588973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020807	exon2	c.C698T	p.T233M	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57135266	57135266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon31	c.C4180T	p.R1394C	.	.	.
CDH11	1009	broad.mit.edu	36	16	63539143	63539143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon13	c.C2255T	p.A752V	.	.	.
CES4A	283848	broad.mit.edu	36	16	65595541	65595541	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190201	exon7	c.T699G	p.P233P	.	.	.
KIAA0895L	653319	broad.mit.edu	36	16	65771824	65771824	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040715	exon2	c.A191G	p.Q64R	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66134034	66134034	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193522	exon13	c.C1856A	p.P619H	.	.	.
DDX28	55794	broad.mit.edu	36	16	66613588	66613588	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018380	exon1	c.T1019C	p.L340S	.	.	.
PDPR	55066	broad.mit.edu	36	16	68734982	68734982	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017990	exon14	c.C1674T	p.G558G	.	.	.
COG4	25839	broad.mit.edu	36	16	69072501	69072501	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015386	exon19	c.G2283A	p.T761T	.	.	.
SF3B3	23450	broad.mit.edu	36	16	69145991	69145991	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012426	exon12	c.C1544T	p.A515V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69487409	69487409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon54	c.G9121A	p.A3041T	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69685240	69685240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon11	c.G1427A	p.G476E	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71551058	71551058	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon2	c.G488C	p.S163T	.	.	.
MON1B	22879	broad.mit.edu	36	16	75786045	75786045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014940	exon4	c.C788T	p.A263V	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75953574	75953574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon7	c.G1145A	p.R382K	 ADAMTS18,large_intestine,colon,Substitution - Missense,0 	.	.
NUDT7	283927	broad.mit.edu	36	16	76327268	76327268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105663	exon3	c.C232T	p.R78C	.	.	.
CENPN	55839	broad.mit.edu	36	16	79611327	79611327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018455	exon6	c.C476T	p.P159L	.	.	.
GAN	8139	broad.mit.edu	36	16	79948941	79948941	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022041	exon5	c.C877T	p.R293X	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82645632	82645632	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003791	exon23	c.C3082T	p.P1028S	.	.	.
USP10	9100	broad.mit.edu	36	16	83350472	83350472	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005153	exon6	c.A1287G	p.T429T	.	.	.
KIAA0182	23199	broad.mit.edu	36	16	84257306	84257306	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134473	exon12	c.C2670T	p.G890G	.	.	.
FOXF1	2294	broad.mit.edu	36	16	85101991	85101991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001451	exon1	c.C315T	p.C105C	.	.	.
JPH3	57338	broad.mit.edu	36	16	86235921	86235921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020655	exon2	c.C939T	p.G313G	.	.	.
CA5A	763	broad.mit.edu	36	16	86493574	86493574	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001739	exon4	c.C513T	p.V171V	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87192224	87192224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144604	exon4	c.G826A	p.A276T	.	.	.
USP7	7874	broad.mit.edu	36	16	8901078	8901078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003470	exon22	c.G2347A	p.A783T	.	.	.
NTAN1	123803	broad.mit.edu	36	16	15039491	15039491	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173474	exon10	c.831delA	p.K277fs	.	.	.
SPN	6693	broad.mit.edu	36	16	29583739	29583739	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030288	exon2	c.1189delG	p.G397fs	.	.	.
PRRT2	112476	broad.mit.edu	36	16	29732517	29732517	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145239	exon2	c.641delC	p.A214fs	.	.	.
CLDN6	9074	broad.mit.edu	36	16	3005487	3005487	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021195	exon2	c.537delG	p.G179fs	.	.	.
CYLD	1540	broad.mit.edu	36	16	49383020	49383020	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015247	exon16	c.2159delA	p.E720fs	.	.	.
CHST4	10164	broad.mit.edu	36	16	70128094	70128094	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166395	exon2	c.13delA	p.K5fs	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80462012	80462012	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002661	exon7	c.619delA	p.K207fs	.	.	.
CCDC137	339230	broad.mit.edu	36	17	77247879	77247880	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199287	exon3	c.488_489insA	p.A163fs	.	.	.
MYH13	8735	broad.mit.edu	36	17	10206210	10206210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon5	c.C455T	p.P152L	.	.	.
MYH4	4622	broad.mit.edu	36	17	10288729	10288729	+	Missense_Mutation	SNP	G	A	A	rs34260986	byCluster;byFrequency	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017533	exon39	c.C5584T	p.R1862C	.	.	.
MYH1	4619	broad.mit.edu	36	17	10345164	10345164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon27	c.C3726T	p.V1242V	.	.	.
MYH1	4619	broad.mit.edu	36	17	10347186	10347186	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon23	c.T2796C	p.D932D	.	.	.
MYH3	4621	broad.mit.edu	36	17	10498990	10498990	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002470	exon2	c.C117T	p.F39F	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11719088	11719088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon53	c.G10340A	p.R3447H	.	.	.
YWHAE	7531	broad.mit.edu	36	17	1211268	1211268	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006761	exon4	c.T446G	p.L149R	.	.	.
CRK	1398	broad.mit.edu	36	17	1286883	1286883	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016823	exon2	c.C558T	p.Y186Y	.	.	.
RILP	83547	broad.mit.edu	36	17	1497982	1497982	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031430	exon6	c.C841T	p.R281W	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1533607	1533607	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006445	exon3	c.A239G	p.K80R	.	.	.
MPRIP	23164	broad.mit.edu	36	17	16922063	16922063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015134	exon3	c.G215A	p.R72Q	.	.	.
RAI1	10743	broad.mit.edu	36	17	17637891	17637891	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030665	exon3	c.A904C	p.T302P	.	.	.
RAI1	10743	broad.mit.edu	36	17	17638194	17638194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030665	exon3	c.G1207A	p.A403T	.	.	.
RTN4RL1	146760	broad.mit.edu	36	17	1787079	1787079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178568	exon2	c.G787A	p.A263T	.	.	.
LLGL1	3996	broad.mit.edu	36	17	18078952	18078952	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004140	exon9	c.G980A	p.R327Q	.	.	.
FBXW10	10517	broad.mit.edu	36	17	18623118	18623118	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031456	exon14	c.G2938T	p.V980L	.	.	.
SPECC1	92521	broad.mit.edu	36	17	20089971	20089971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033555	exon6	c.G2249A	p.R750H	.	.	.
SMG6	23293	broad.mit.edu	36	17	2148974	2148974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170957	exon2	c.G1730A	p.G577D	.	.	.
MNT	4335	broad.mit.edu	36	17	2237689	2237689	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020310	exon6	c.T1005C	p.G335G	.	.	.
PIGS	94005	broad.mit.edu	36	17	23914611	23914611	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033198	exon5	c.T433C	p.Y145H	.	.	.
ERAL1	26284	broad.mit.edu	36	17	24209939	24209939	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005702	exon7	c.C931A	p.L311I	.	.	.
CPD	1362	broad.mit.edu	36	17	25773900	25773900	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199775	exon5	c.A649G	p.T217A	.	.	.
GOSR1	9527	broad.mit.edu	36	17	25841348	25841348	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007024	exon5	c.C232T	p.R78X	.	.	.
C17orf102	400591	broad.mit.edu	36	17	29928698	29928698	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207454	exon2	c.G465A	p.R155R	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29980175	29980175	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207313	exon5	c.C907T	p.L303L	.	.	.
LIG3	3980	broad.mit.edu	36	17	30348955	30348955	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013975	exon12	c.A1909G	p.T637A	.	.	.
FNDC8	54752	broad.mit.edu	36	17	30478468	30478468	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017559	exon2	c.G504A	p.T168T	.	.	.
OR1A2	26189	broad.mit.edu	36	17	3047980	3047980	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012352	exon1	c.T418G	p.S140A	.	.	.
AP2B1	163	broad.mit.edu	36	17	30959471	30959471	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001282	exon5	c.G477T	p.Q159H	.	.	.
ACACA	31	broad.mit.edu	36	17	32671555	32671555	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198834	exon24	c.T3071C	p.V1024A	.	.	.
GPR179	440435	broad.mit.edu	36	17	33736244	33736244	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.A6734G	p.E2245G	.	.	.
GPR179	440435	broad.mit.edu	36	17	33736944	33736944	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.A6034G	p.S2012G	.	.	.
MLLT6	4302	broad.mit.edu	36	17	34116771	34116771	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005937	exon2	c.G152A	p.C51Y	.	.	.
PIP4K2B	8396	broad.mit.edu	36	17	34187568	34187568	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003559	exon7	c.G705A	p.L235L	.	.	.
SHPK	23729	broad.mit.edu	36	17	3460831	3460831	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013276	exon7	c.C1209A	p.C403X	.	.	.
NEUROD2	4761	broad.mit.edu	36	17	35015825	35015825	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006160	exon2	c.T554C	p.L185P	.	.	.
P2RX5	5026	broad.mit.edu	36	17	3529732	3529732	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002561	exon11	c.C1160T	p.P387L	.	.	.
GSDMA	284110	broad.mit.edu	36	17	35385758	35385758	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178171	exon11	c.A1077G	p.L359L	.	.	.
WIPF2	147179	broad.mit.edu	36	17	35674623	35674623	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133264	exon5	c.A669T	p.G223G	.	.	.
KRT25	147183	broad.mit.edu	36	17	36164165	36164165	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181534	exon2	c.A511G	p.K171E	.	.	.
JUP	3728	broad.mit.edu	36	17	37167514	37167514	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021991	exon11	c.C1822T	p.L608L	.	.	.
NAGLU	4669	broad.mit.edu	36	17	37946729	37946729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000263	exon5	c.G1000A	p.V334I	.	.	.
MLX	6945	broad.mit.edu	36	17	37974479	37974479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198205	exon3	c.G178A	p.A60T	.	.	.
EZH1	2145	broad.mit.edu	36	17	38109328	38109328	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001991	exon19	c.T2054A	p.I685N	.	.	.
AOC3	8639	broad.mit.edu	36	17	38257266	38257266	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003734	exon1	c.T380C	p.I127T	.	.	.
IFI35	3430	broad.mit.edu	36	17	38418702	38418702	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005533	exon3	c.C233T	p.A78V	.	.	.
VAT1	10493	broad.mit.edu	36	17	38424307	38424307	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006373	exon2	c.G423A	p.G141G	.	.	.
BRCA1	672	broad.mit.edu	36	17	38499608	38499608	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007294	exon10	c.A1466G	p.E489G	.	.	.
MPP2	4355	broad.mit.edu	36	17	39315266	39315266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005374	exon6	c.G593T	p.R198L	.	.	.
GRN	2896	broad.mit.edu	36	17	39785360	39785360	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002087	exon12	c.C1539T	p.H513H	.	.	.
FZD2	2535	broad.mit.edu	36	17	39992127	39992127	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001466	exon1	c.G1545A	p.S515S	.	.	.
DBF4B	80174	broad.mit.edu	36	17	40181359	40181359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025104	exon13	c.G1189A	p.V397M	.	.	.
ARHGAP27	201176	broad.mit.edu	36	17	40837655	40837655	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199282	exon5	c.G329A	p.S110N	.	.	.
KIAA1267	284058	broad.mit.edu	36	17	41604859	41604859	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015443	exon2	c.C428T	p.T143M	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42735142	42735142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000212	exon13	c.G2071A	p.V691I	.	.	.
MYBBP1A	10514	broad.mit.edu	36	17	4391573	4391573	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014520	exon24	c.G3231A	p.A1077A	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44478362	44478362	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160423	exon11	c.A1090G	p.I364V	.	.	.
SLC35B1	10237	broad.mit.edu	36	17	45133823	45133823	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005827	exon9	c.A965T	p.H322L	.	.	.
CHAD	1101	broad.mit.edu	36	17	45900405	45900405	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001267	exon1	c.G769T	p.E257X	.	.	.
MYCBPAP	84073	broad.mit.edu	36	17	45959742	45959742	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032133	exon15	c.G2394A	p.L798L	.	.	.
SPATA20	64847	broad.mit.edu	36	17	45983079	45983079	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022827	exon11	c.C1185T	p.F395F	.	.	.
WFIKKN2	124857	broad.mit.edu	36	17	46273166	46273166	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175575	exon2	c.C1518T	p.V506V	.	.	.
CAMTA2	23125	broad.mit.edu	36	17	4816521	4816521	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015099	exon16	c.G2538A	p.S846S	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49255977	49255977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032559	exon1	c.G584A	p.R195H	.	.	.
PCTP	58488	broad.mit.edu	36	17	51207214	51207214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021213	exon5	c.G574A	p.A192T	.	.	.
TRIM25	7706	broad.mit.edu	36	17	52324376	52324376	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005082	exon9	c.T1577C	p.V526A	.	.	.
MIS12	79003	broad.mit.edu	36	17	5333468	5333468	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024039	exon3	c.C562T	p.L188L	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5359077	5359077	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033007	exon15	c.T3921C	p.F1307F	.	.	.
LPO	4025	broad.mit.edu	36	17	53681510	53681510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006151	exon5	c.G416A	p.R139H	.	.	.
RNF43	54894	broad.mit.edu	36	17	53790071	53790071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017763	exon9	c.G2065A	p.A689T	.	.	.
MTMR4	9110	broad.mit.edu	36	17	53928577	53928577	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004687	exon16	c.T1925C	p.V642A	.	.	.
TEX14	56155	broad.mit.edu	36	17	54031755	54031755	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon14	c.A1950G	p.G650G	.	.	.
TEX14	56155	broad.mit.edu	36	17	54055212	54055212	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon4	c.A412G	p.T138A	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54474026	54474026	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005207	exon17	c.T1683C	p.D561D	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54645643	54645643	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018149	exon3	c.T2677C	p.S893P	.	.	.
TUBD1	51174	broad.mit.edu	36	17	55306682	55306682	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193613	exon3	c.G286T	p.G96C	.	.	.
CA4	762	broad.mit.edu	36	17	55589581	55589581	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000717	exon4	c.C280T	p.L94L	.	.	.
INTS2	57508	broad.mit.edu	36	17	57344183	57344183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020748	exon6	c.G704A	p.R235Q	.	.	.
EFCAB3	146779	broad.mit.edu	36	17	57847244	57847244	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173503	exon10	c.G1139A	p.W380X	.	.	.
STRADA	92335	broad.mit.edu	36	17	59135650	59135650	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165969	exon9	c.A796T	p.T266S	.	.	.
FTSJ3	117246	broad.mit.edu	36	17	59256365	59256365	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017647	exon7	c.T564C	p.H188H	.	.	.
GH1	2688	broad.mit.edu	36	17	59348514	59348514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022560	exon4	c.G421A	p.A141T	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59375874	59375874	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon21	c.A3803G	p.N1268S	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5964433	5964433	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015253	exon9	c.C1456T	p.L486L	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64528210	64528210	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon19	c.C2514T	p.G838G	.	.	.
KCNJ2	3759	broad.mit.edu	36	17	65683428	65683428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000891	exon2	c.G653A	p.R218Q	.	.	.
TEKT1	83659	broad.mit.edu	36	17	6659223	6659223	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053285	exon5	c.C612T	p.A204A	.	.	.
SLC39A11	201266	broad.mit.edu	36	17	68156679	68156679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159770	exon9	c.G808A	p.G270S	.	.	.
C17orf80	55028	broad.mit.edu	36	17	68743234	68743234	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100622	exon3	c.C18G	p.P6P	.	.	.
SDK2	54549	broad.mit.edu	36	17	68865873	68865873	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144952	exon40	c.T5533C	p.S1845P	.	.	.
SLC9A3R1	9368	broad.mit.edu	36	17	70269852	70269852	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004252	exon2	c.A548T	p.D183V	.	.	.
FADS6	283985	broad.mit.edu	36	17	70387140	70387140	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178128	exon5	c.A895G	p.M299V	.	.	.
DVL2	1856	broad.mit.edu	36	17	7073063	7073063	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon9	c.T983C	p.M328T	.	.	.
ACAP1	9744	broad.mit.edu	36	17	7190908	7190908	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014716	exon13	c.G1065A	p.V355V	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73558109	73558109	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018996	exon4	c.C1371T	p.N457N	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7661709	7661709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon65	c.G10126A	p.A3376T	.	.	.
NPLOC4	55666	broad.mit.edu	36	17	77199645	77199645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017921	exon3	c.G161A	p.G54E	.	.	.
CHD3	1107	broad.mit.edu	36	17	7737458	7737458	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005852	exon5	c.G639A	p.A213A	.	.	.
CHD3	1107	broad.mit.edu	36	17	7738589	7738589	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005852	exon8	c.C1207A	p.L403I	.	.	.
HEXDC	284004	broad.mit.edu	36	17	77988475	77988475	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173620	exon8	c.G846A	p.A282A	.	.	.
B3GNTL1	146712	broad.mit.edu	36	17	78586257	78586257	+	De_novo_Start_InFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009905	exon4	c.C285T	p.Y95Y	.	.	.
PER1	5187	broad.mit.edu	36	17	7993878	7993878	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002616	exon5	c.G571A	p.E191K	.	.	.
NDEL1	81565	broad.mit.edu	36	17	8304083	8304083	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025579	exon8	c.A824T	p.N275I	.	.	.
GLP2R	9340	broad.mit.edu	36	17	9733694	9733694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004246	exon13	c.G1609T	p.D537Y	.	.	.
SHMT1	6470	broad.mit.edu	36	17	18191614	18191614	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004169	exon5	c.440delG	p.G147fs	.	.	.
NOS2	4843	broad.mit.edu	36	17	23118898	23118898	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000625	exon18	c.2127delC	p.Y709X	.	.	.
C17orf85	55421	broad.mit.edu	36	17	3663203	3663203	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114118	exon13	c.1747delG	p.A583fs	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46432040	46432040	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003971	exon13	c.1603delA	p.R535fs	.	.	.
RNF43	54894	broad.mit.edu	36	17	53790160	53790160	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017763	exon9	c.1976delG	p.G659fs	.	.	.
ACE	1636	broad.mit.edu	36	17	58914158	58914158	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000789	exon9	c.1379delA	p.E460fs	.	.	.
TOM1L1	10040	broad.mit.edu	36	17	50369592	50369592	+	Nonstop_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875485	13875485	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000529	exon2	c.C33T	p.I11I	.	.	.
DSG3	1830	broad.mit.edu	36	18	27291033	27291033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon3	c.C164T	p.A55V	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2733861	2733861	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon29	c.C3736T	p.R1246X	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2741361	2741361	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon33	c.G4251A	p.L1417L	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27708569	27708569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014939	exon13	c.C1825T	p.R609C	.	.	.
DTNA	1837	broad.mit.edu	36	18	30654799	30654799	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198938	exon10	c.G923T	p.S308I	.	.	.
ELP2	55250	broad.mit.edu	36	18	31998541	31998541	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018255	exon18	c.T1867C	p.S623P	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32551974	32551974	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon16	c.T2190C	p.L730L	.	.	.
DLGAP1	9229	broad.mit.edu	36	18	3492621	3492621	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003809	exon9	c.C1688A	p.P563H	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40786039	40786039	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015559	exon4	c.G2736T	p.K912N	.	.	.
HAUS1	115106	broad.mit.edu	36	18	41958851	41958851	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138443	exon7	c.A732T	p.L244F	.	.	.
HDHD2	84064	broad.mit.edu	36	18	42893367	42893367	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032124	exon6	c.C655T	p.L219L	.	.	.
MRO	83876	broad.mit.edu	36	18	46587090	46587090	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031939	exon4	c.C228A	p.A76A	.	.	.
DCC	1630	broad.mit.edu	36	18	48843766	48843766	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon6	c.C1079A	p.P360H	.	.	.
WDR7	23335	broad.mit.edu	36	18	52845329	52845329	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon28	c.T4366C	p.S1456P	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5396869	5396869	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012307	exon16	c.G2256A	p.T752T	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54159322	54159322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015277	exon13	c.C1138T	p.R380C	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5435192	5435192	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012307	exon4	c.T433G	p.L145V	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6858208	6858208	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010000	exon5	c.A309T	p.G103G	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6872152	6872152	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010000	exon10	c.T830C	p.L277P	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6954726	6954726	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon51	c.T7272C	p.S2424S	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7039112	7039112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon5	c.G733A	p.E245K	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72709757	72709757	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon4	c.C486T	p.F162F	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72735966	72735966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon10	c.G1421A	p.R474H	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72768119	72768119	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon23	c.C4160T	p.T1387M	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8360941	8360941	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon22	c.A3069C	p.K1023N	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8809069	8809069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon13	c.G2968A	p.V990M	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9201613	9201613	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015208	exon6	c.G483A	p.T161T	.	.	.
RALBP1	10928	broad.mit.edu	36	18	9523423	9523423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006788	exon8	c.C1546T	p.R516C	.	.	.
SERPINB10	5273	broad.mit.edu	36	18	59735719	59735719	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005024	exon2	c.218delA	p.E73fs	.	.	.
RBFA	79863	broad.mit.edu	36	18	75906865	75906865	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171967	exon6	c.669delA	p.T223fs	.	.	.
ANGPTL6	83854	broad.mit.edu	36	19	10066579	10066579	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031917	exon3	c.G618A	p.P206P	.	.	.
ABCA7	10347	broad.mit.edu	36	19	1007917	1007917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019112	exon34	c.C4598T	p.S1533L	.	.	.
KEAP1	9817	broad.mit.edu	36	19	10471337	10471337	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203500	exon2	c.A373G	p.I125V	.	.	.
ATG4D	84971	broad.mit.edu	36	19	10523903	10523903	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032885	exon9	c.G1145A	p.R382H	.	.	.
SLC44A2	57153	broad.mit.edu	36	19	10603209	10603209	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020428	exon7	c.C500A	p.P167H	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920853	11920853	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144566	exon4	c.A1014G	p.Q338Q	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13271103	13271103	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174080	exon19	c.C2347T	p.R783X	.	.	.
ASF1B	55723	broad.mit.edu	36	19	14098031	14098031	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018154	exon2	c.T128G	p.I43S	.	.	.
CCDC105	126402	broad.mit.edu	36	19	14992279	14992279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173482	exon3	c.G682A	p.A228T	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15059440	15059440	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004713	exon1	c.C564T	p.S188S	.	.	.
ILVBL	10994	broad.mit.edu	36	19	15088063	15088063	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006844	exon12	c.G1371A	p.T457T	.	.	.
OR10H1	26539	broad.mit.edu	36	19	15779449	15779449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013940	exon1	c.C399T	p.N133N	.	.	.
C19orf44	84167	broad.mit.edu	36	19	16475030	16475030	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032207	exon3	c.G914A	p.S305N	.	.	.
NWD1	284434	broad.mit.edu	36	19	16751222	16751222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007525	exon12	c.G2677A	p.A893T	.	.	.
SIN3B	23309	broad.mit.edu	36	19	16837364	16837364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015260	exon12	c.C1623T	p.R541R	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16897130	16897130	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015692	exon26	c.G3564A	p.P1188P	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17234374	17234374	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031941	exon4	c.C629T	p.T210M	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17593650	17593650	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080421	exon35	c.A4233G	p.G1411G	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17621388	17621388	+	Missense_Mutation	SNP	C	T	T	rs34741580	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon13	c.G1448A	p.G483D	.	.	.
KIAA1683	80726	broad.mit.edu	36	19	18229624	18229624	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025249	exon4	c.C2909A	p.A970E	.	.	.
UBA52	7311	broad.mit.edu	36	19	18546770	18546770	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033930	exon4	c.T281C	p.M94T	.	.	.
DDX49	54555	broad.mit.edu	36	19	18899980	18899980	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019070	exon13	c.T1307C	p.I436T	.	.	.
SUGP2	10147	broad.mit.edu	36	19	18997781	18997781	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014884	exon3	c.C376T	p.R126W	.	.	.
MAU2	23383	broad.mit.edu	36	19	19326227	19326227	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015329	exon17	c.C1612T	p.Q538X	.	.	.
TSSK6	83983	broad.mit.edu	36	19	19486969	19486969	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032037	exon1	c.A268G	p.M90V	.	.	.
LPAR2	9170	broad.mit.edu	36	19	19598408	19598408	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004720	exon2	c.A686G	p.H229R	.	.	.
MOBKL2A	126308	broad.mit.edu	36	19	2029328	2029328	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130807	exon3	c.A232G	p.T78A	.	.	.
ZNF100	163227	broad.mit.edu	36	19	21702332	21702332	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173531	exon5	c.A622G	p.K208E	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22731737	22731737	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon6	c.A2434T	p.N812Y	.	.	.
MIER2	54531	broad.mit.edu	36	19	278962	278962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017550	exon4	c.C271T	p.L91F	.	.	.
ZNF555	148254	broad.mit.edu	36	19	2803846	2803846	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172775	exon4	c.T780A	p.C260X	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35626880	35626880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014717	exon2	c.C571T	p.R191C	.	.	.
SLC7A10	56301	broad.mit.edu	36	19	38394230	38394230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019849	exon6	c.C842T	p.T281M	.	.	.
KIAA0355	9710	broad.mit.edu	36	19	39510586	39510586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014686	exon5	c.C917T	p.P306L	.	.	.
UBA2	10054	broad.mit.edu	36	19	39649640	39649640	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005499	exon16	c.A1622T	p.D541V	.	.	.
USF2	7392	broad.mit.edu	36	19	40461460	40461460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003367	exon8	c.C747A	p.D249E	.	.	.
UPK1A	11045	broad.mit.edu	36	19	40851375	40851375	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007000	exon2	c.C264T	p.R88R	.	.	.
MLL4	9757	broad.mit.edu	36	19	40902759	40902759	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014727	exon3	c.C670T	p.P224S	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41044698	41044698	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199180	exon11	c.G1442T	p.R481M	.	.	.
CLIP3	25999	broad.mit.edu	36	19	41202006	41202006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199570	exon7	c.G961A	p.G321S	.	.	.
COX7A1	1346	broad.mit.edu	36	19	41334230	41334230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001864	exon3	c.G161A	p.R54Q	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42311430	42311430	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144689	exon5	c.A1697C	p.K566T	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42334750	42334750	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G1726C	p.E576Q	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42368572	42368572	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152279	exon5	c.G1707T	p.Q569H	.	.	.
ZNF383	163087	broad.mit.edu	36	19	42425644	42425644	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152604	exon5	c.C666T	p.G222G	.	.	.
TMIGD2	126259	broad.mit.edu	36	19	4249206	4249206	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169126	exon2	c.G183T	p.K61N	.	.	.
HKR1	284459	broad.mit.edu	36	19	42545154	42545154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181786	exon6	c.C617T	p.A206V	.	.	.
ZNF571	51276	broad.mit.edu	36	19	42748491	42748491	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016536	exon4	c.G679A	p.A227T	.	.	.
RYR1	6261	broad.mit.edu	36	19	43648861	43648861	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon24	c.C3161A	p.P1054H	.	.	.
LGALS4	3960	broad.mit.edu	36	19	43994930	43994930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006149	exon2	c.G115A	p.A39T	.	.	.
ECH1	1891	broad.mit.edu	36	19	43998935	43998935	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001398	exon7	c.G657T	p.Q219H	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44026499	44026499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005335	exon5	c.G397A	p.E133K	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44655386	44655386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003169	exon21	c.G2132A	p.R711H	.	.	.
EID2	163126	broad.mit.edu	36	19	44722243	44722243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153232	exon1	c.C317T	p.A106V	.	.	.
AKT2	208	broad.mit.edu	36	19	45433710	45433710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon11	c.C1102T	p.R368C	.	.	.
AKT2	208	broad.mit.edu	36	19	45433777	45433777	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon11	c.C1035T	p.C345C	.	.	.
SPTBN4	57731	broad.mit.edu	36	19	45690763	45690763	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020971	exon5	c.G549T	p.K183N	.	.	.
CYP2A13	1553	broad.mit.edu	36	19	46288262	46288262	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000766	exon4	c.C607T	p.R203C	.	.	.
CYP2F1	1572	broad.mit.edu	36	19	46318115	46318115	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000774	exon4	c.C358T	p.R120X	.	.	.
CIC	23152	broad.mit.edu	36	19	47489725	47489725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015125	exon16	c.C3937T	p.R1313W	.	.	.
TICAM1	148022	broad.mit.edu	36	19	4768394	4768394	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182919	exon2	c.G996A	p.T332T	.	.	.
PSG6	5675	broad.mit.edu	36	19	48112442	48112442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031850	exon2	c.C102T	p.A34A	.	.	.
PSG2	5670	broad.mit.edu	36	19	48267901	48267901	+	Missense_Mutation	SNP	C	T	T	rs1135795	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031246	exon4	c.G755A	p.R252H	.	.	.
ZNF229	7772	broad.mit.edu	36	19	49625343	49625343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014518	exon6	c.G1453A	p.G485S	.	.	.
CLPTM1	1209	broad.mit.edu	36	19	50185681	50185681	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001294	exon10	c.C1321T	p.R441W	.	.	.
PPM1N	147699	broad.mit.edu	36	19	50695581	50695581	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080401	exon3	c.C1085A	p.P362H	.	.	.
SLC1A5	6510	broad.mit.edu	36	19	51972495	51972495	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145145	exon5	c.A460G	p.T154A	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52114183	52114183	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004491	exon1	c.C411T	p.D137D	.	.	.
MEIS3	56917	broad.mit.edu	36	19	52602196	52602196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020160	exon10	c.G1084A	p.A362T	.	.	.
EHD2	30846	broad.mit.edu	36	19	52920986	52920986	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014601	exon4	c.C608A	p.A203D	.	.	.
EHD2	30846	broad.mit.edu	36	19	52936363	52936363	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014601	exon6	c.C1494T	p.D498D	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53300469	53300469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159323	exon3	c.C53T	p.A18V	.	.	.
TMEM143	55260	broad.mit.edu	36	19	53558593	53558593	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018273	exon2	c.G31T	p.G11X	.	.	.
FUT2	2524	broad.mit.edu	36	19	53898264	53898264	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097638	exon2	c.C239A	p.A80D	.	.	.
FGF21	26291	broad.mit.edu	36	19	53953147	53953147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019113	exon3	c.G488A	p.R163H	.	.	.
CD37	951	broad.mit.edu	36	19	54533800	54533800	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040031	exon6	c.A275G	p.D92G	.	.	.
PTH2	113091	broad.mit.edu	36	19	54617539	54617539	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178449	exon2	c.T301C	p.X101R	.	.	.
RCN3	57333	broad.mit.edu	36	19	54732174	54732174	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020650	exon4	c.G518A	p.R173Q	.	.	.
NOSIP	51070	broad.mit.edu	36	19	54755029	54755029	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015953	exon4	c.G150A	p.L50L	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55241705	55241705	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006656	exon5	c.A2193G	p.V731V	.	.	.
KCNC3	3748	broad.mit.edu	36	19	55518697	55518697	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004977	exon2	c.G1325A	p.R442H	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55893014	55893014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016148	exon12	c.G1759A	p.G587R	.	.	.
SIGLEC12	89858	broad.mit.edu	36	19	56686749	56686749	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033329	exon7	c.G1392T	p.E464D	.	.	.
SIGLEC12	89858	broad.mit.edu	36	19	56695278	56695278	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033329	exon1	c.T162C	p.S54S	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5702780	5702780	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152784	exon12	c.C1110T	p.L370L	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57311813	57311813	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178523	exon4	c.A416C	p.Q139P	.	.	.
ZNF578	147660	broad.mit.edu	36	19	57705651	57705651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099694	exon6	c.C205T	p.R69C	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900258	57900258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161501	exon5	c.C1655T	p.P552L	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57996038	57996038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006969	exon4	c.C872T	p.A291V	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58438938	58438938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon4	c.G40A	p.A14T	.	.	.
LENG1	79165	broad.mit.edu	36	19	59352400	59352400	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024316	exon3	c.A488T	p.H163L	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60509573	60509573	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032430	exon17	c.C2032T	p.R678X	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61012169	61012169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145007	exon5	c.C1619T	p.T540M	.	.	.
MLLT1	4298	broad.mit.edu	36	19	6181669	6181669	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005934	exon4	c.A332G	p.N111S	.	.	.
USP29	57663	broad.mit.edu	36	19	62334405	62334405	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020903	exon4	c.G2550A	p.K850K	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338944	62338944	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052882	exon5	c.T573C	p.C191C	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62341653	62341653	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052882	exon3	c.G141A	p.V47V	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415784	62415784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003417	exon4	c.C1507T	p.R503W	.	.	.
ZNF304	57343	broad.mit.edu	36	19	62557025	62557025	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020657	exon2	c.A154G	p.T52A	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62603002	62603002	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152909	exon3	c.A1535G	p.N512S	.	.	.
ZNF134	7693	broad.mit.edu	36	19	62824494	62824494	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003435	exon3	c.C1195T	p.P399S	.	.	.
ZNF671	79891	broad.mit.edu	36	19	62924462	62924462	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024833	exon4	c.C804T	p.P268P	.	.	.
ZNF256	10172	broad.mit.edu	36	19	63147183	63147183	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005773	exon2	c.C91A	p.L31I	.	.	.
ZSCAN1	284312	broad.mit.edu	36	19	63256947	63256947	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182572	exon6	c.C943T	p.R315C	.	.	.
GTF2F1	2962	broad.mit.edu	36	19	6331335	6331335	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002096	exon13	c.G1511A	p.R504H	.	.	.
ZNF324B	388569	broad.mit.edu	36	19	63658953	63658953	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207395	exon4	c.G830A	p.R277H	.	.	.
C3	718	broad.mit.edu	36	19	6628996	6628996	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon41	c.A4889G	p.H1630R	.	.	.
INSR	3643	broad.mit.edu	36	19	7068292	7068292	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon22	c.G3924T	p.E1308D	.	.	.
PTBP1	5725	broad.mit.edu	36	19	755922	755922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031991	exon7	c.G700A	p.A234T	.	.	.
ELAVL1	1994	broad.mit.edu	36	19	7952013	7952013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001419	exon3	c.C230T	p.A77V	.	.	.
FBN3	84467	broad.mit.edu	36	19	8067391	8067391	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032447	exon43	c.G5476T	p.G1826C	.	.	.
OR2Z1	284383	broad.mit.edu	36	19	8703274	8703274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004699	exon1	c.C884T	p.P295L	.	.	.
MBD3L1	85509	broad.mit.edu	36	19	8814886	8814886	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145208	exon1	c.G532A	p.A178T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8935301	8935301	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C13145A	p.S4382Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8949708	8949708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.C3107T	p.A1036V	.	.	.
ZNF559	84527	broad.mit.edu	36	19	9314096	9314096	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032497	exon6	c.A969C	p.K323N	.	.	.
CD97	976	broad.mit.edu	36	19	14379759	14379759	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025160	exon18	c.2269delG	p.G757fs	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44641314	44641316	+	In_Frame_Del	DEL	TGT	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003169	exon5	c.336_338del	p.112_113del	.	.	.
CEACAM4	1089	broad.mit.edu	36	19	46825160	46825160	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001817	exon1	c.12delC	p.P4fs	.	.	.
ZNF418	147686	broad.mit.edu	36	19	63131141	63131141	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133460	exon4	c.220delG	p.A74fs	.	.	.
FBXL12	54850	broad.mit.edu	36	19	9783291	9783291	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017703	exon3	c.262delC	p.Q88fs	.	.	.
C19orf34	255193	broad.mit.edu	36	19	1904917	1904917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CEACAM16	388551	broad.mit.edu	36	19	49894542	49894542	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TRIM17	51127	broad.mit.edu	36	1	226663401	226663402	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134855	exon6	c.978_979insG	p.G326fs	.	.	.
AGL	178	broad.mit.edu	36	1	100122328	100122328	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000645	exon16	c.G2322T	p.K774N	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103185056	103185056	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon42	c.T3213G	p.I1071M	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103242803	103242803	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon19	c.T1848C	p.G616G	.	.	.
NTNG1	22854	broad.mit.edu	36	1	107668558	107668558	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113228	exon3	c.T378C	p.Y126Y	.	.	.
C1orf194	127003	broad.mit.edu	36	1	109451159	109451159	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122961	exon3	c.A271G	p.T91A	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109544985	109544985	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020775	exon21	c.C2913T	p.D971D	.	.	.
PSRC1	84722	broad.mit.edu	36	1	109625943	109625943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032636	exon4	c.C340T	p.R114W	.	.	.
CYB561D1	284613	broad.mit.edu	36	1	109840237	109840237	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134402	exon2	c.C352T	p.L118L	.	.	.
GPR61	83873	broad.mit.edu	36	1	109887303	109887303	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031936	exon2	c.C136A	p.L46I	.	.	.
AMPD2	271	broad.mit.edu	36	1	109974057	109974057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004037	exon15	c.G2141A	p.R714H	.	.	.
C1orf103	55791	broad.mit.edu	36	1	111296779	111296779	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018372	exon2	c.A250T	p.I84F	.	.	.
MTOR	2475	broad.mit.edu	36	1	11225765	11225765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004958	exon9	c.G1405A	p.A469T	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326386	112326386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004980	exon2	c.G486A	p.S162S	.	.	.
SLC16A1	6566	broad.mit.edu	36	1	113262021	113262021	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166496	exon4	c.G530T	p.S177I	.	.	.
SIKE1	80143	broad.mit.edu	36	1	115124661	115124661	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025073	exon1	c.G91T	p.D31Y	.	.	.
VANGL1	81839	broad.mit.edu	36	1	116028171	116028171	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172411	exon6	c.T1024C	p.Y342H	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117293398	117293398	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020440	exon4	c.C894A	p.T298T	.	.	.
WARS2	10352	broad.mit.edu	36	1	119377102	119377102	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015836	exon6	c.A1038G	p.A346A	.	.	.
PLOD1	5351	broad.mit.edu	36	1	11955584	11955584	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000302	exon18	c.T1971C	p.H657H	.	.	.
HSD3B1	3283	broad.mit.edu	36	1	119851755	119851755	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000862	exon2	c.G133A	p.E45K	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120284889	120284889	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024408	exon19	c.G2995T	p.G999C	.	.	.
PRAMEF12	390999	broad.mit.edu	36	1	12758665	12758665	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080830	exon2	c.G680A	p.G227D	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143588414	143588414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198832	exon31	c.C4498T	p.L1500F	.	.	.
FMO5	2330	broad.mit.edu	36	1	145139611	145139611	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001461	exon7	c.A930C	p.T310T	.	.	.
BCL9	607	broad.mit.edu	36	1	145562653	145562653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon10	c.C3550A	p.P1184T	.	.	.
HIST2H2AB	317772	broad.mit.edu	36	1	148125802	148125802	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175065	exon1	c.T289C	p.L97L	.	.	.
HIST2H2AB	317772	broad.mit.edu	36	1	148125984	148125984	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175065	exon1	c.G107A	p.R36H	.	.	.
SV2A	9900	broad.mit.edu	36	1	148144205	148144205	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014849	exon12	c.C1896T	p.S632S	.	.	.
ADAMTSL4	54507	broad.mit.edu	36	1	148797129	148797129	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019032	exon14	c.T2262G	p.F754L	.	.	.
CTSS	1520	broad.mit.edu	36	1	148991017	148991017	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004079	exon5	c.C491T	p.A164V	.	.	.
RORC	6097	broad.mit.edu	36	1	150054099	150054099	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001523	exon4	c.G662T	p.G221V	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150324371	150324371	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008536	exon3	c.A2411G	p.Y804C	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150325596	150325596	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008536	exon3	c.G1186T	p.G396C	.	.	.
TCHH	7062	broad.mit.edu	36	1	150348459	150348459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007113	exon2	c.G3858T	p.W1286C	.	.	.
TCHH	7062	broad.mit.edu	36	1	150351919	150351919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007113	exon2	c.C398T	p.P133L	.	.	.
KPRP	448834	broad.mit.edu	36	1	150999084	150999084	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025231	exon2	c.C396T	p.F132F	.	.	.
C1orf77	26097	broad.mit.edu	36	1	151881446	151881446	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015607	exon4	c.T320C	p.I107T	.	.	.
C1orf189	388701	broad.mit.edu	36	1	152439614	152439614	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010979	exon3	c.G149T	p.R50M	.	.	.
IL6R	3570	broad.mit.edu	36	1	152704259	152704259	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000565	exon10	c.G1186A	p.A396T	.	.	.
ADAR	103	broad.mit.edu	36	1	152841720	152841720	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015841	exon2	c.T22A	p.S8T	.	.	.
PBXIP1	57326	broad.mit.edu	36	1	153184146	153184146	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020524	exon11	c.A2174G	p.H725R	.	.	.
FLAD1	80308	broad.mit.edu	36	1	153227450	153227450	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025207	exon2	c.A618G	p.E206E	.	.	.
DCST1	149095	broad.mit.edu	36	1	153280704	153280704	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143687	exon6	c.C664T	p.R222C	.	.	.
TRIM46	80128	broad.mit.edu	36	1	153414592	153414592	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025058	exon2	c.C170T	p.A57V	.	.	.
TRIM46	80128	broad.mit.edu	36	1	153416068	153416068	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025058	exon4	c.C706A	p.H236N	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153652224	153652224	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon6	c.C5943A	p.P1981P	.	.	.
GON4L	54856	broad.mit.edu	36	1	153988786	153988786	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037533	exon30	c.A6059C	p.K2020T	.	.	.
UBQLN4	56893	broad.mit.edu	36	1	154273537	154273537	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020131	exon11	c.G1662A	p.T554T	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154790685	154790685	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon13	c.G1414T	p.G472C	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155917480	155917480	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052939	exon12	c.G1872A	p.S624S	.	.	.
FCRL2	79368	broad.mit.edu	36	1	156003811	156003811	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030764	exon6	c.C996T	p.Y332Y	.	.	.
OR10R2	343406	broad.mit.edu	36	1	156717221	156717221	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004472	exon1	c.T930A	p.Y310X	.	.	.
OR10Z1	128368	broad.mit.edu	36	1	156843194	156843194	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004478	exon1	c.T342C	p.L114L	.	.	.
MNDA	4332	broad.mit.edu	36	1	157082069	157082069	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002432	exon5	c.A639G	p.T213T	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157180377	157180377	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198930	exon6	c.G1149T	p.M383I	.	.	.
OR10J5	127385	broad.mit.edu	36	1	157771913	157771913	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004469	exon1	c.G509A	p.G170D	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158165202	158165202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135050	exon19	c.G2600A	p.G867D	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158418200	158418200	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144699	exon19	c.C2839T	p.R947C	.	.	.
VANGL2	57216	broad.mit.edu	36	1	158655518	158655518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020335	exon4	c.G295A	p.V99I	.	.	.
PVRL4	81607	broad.mit.edu	36	1	159310196	159310196	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030916	exon7	c.A1171G	p.T391A	.	.	.
FCGR2A	2212	broad.mit.edu	36	1	159742838	159742838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136219	exon3	c.G197A	p.R66H	.	.	.
EPHA2	1969	broad.mit.edu	36	1	16332375	16332375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004431	exon11	c.C1940T	p.T647M	.	.	.
POGK	57645	broad.mit.edu	36	1	165082517	165082517	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017542	exon3	c.G177T	p.E59D	.	.	.
POGK	57645	broad.mit.edu	36	1	165083409	165083409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017542	exon4	c.C314T	p.S105F	.	.	.
FMO4	2329	broad.mit.edu	36	1	169570378	169570378	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002022	exon8	c.C1032A	p.L344L	.	.	.
RC3H1	149041	broad.mit.edu	36	1	172206305	172206305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172071	exon8	c.C1295T	p.A432V	.	.	.
RABGAP1L	9910	broad.mit.edu	36	1	172511608	172511608	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014857	exon9	c.G1068T	p.K356N	.	.	.
TNR	7143	broad.mit.edu	36	1	173639056	173639056	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon4	c.G819T	p.K273N	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174935182	174935182	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon8	c.A3070C	p.T1024P	.	.	.
PADI6	353238	broad.mit.edu	36	1	17593494	17593494	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207421	exon11	c.T1295C	p.V432A	.	.	.
KIAA1614	57710	broad.mit.edu	36	1	179172088	179172088	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020950	exon5	c.C2420T	p.A807V	.	.	.
KIAA1614	57710	broad.mit.edu	36	1	179181215	179181215	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020950	exon9	c.C3441T	p.C1147C	.	.	.
ACTL8	81569	broad.mit.edu	36	1	18022296	18022296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030812	exon2	c.G206A	p.R69Q	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181366222	181366222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon19	c.C3401T	p.A1134V	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19039499	19039499	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152232	exon6	c.C1701T	p.I567I	.	.	.
TROVE2	6738	broad.mit.edu	36	1	191304842	191304842	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173524	exon2	c.A35G	p.N12S	.	.	.
KIAA0090	23065	broad.mit.edu	36	1	19438907	19438907	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015047	exon8	c.T946C	p.F316L	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194843978	194843978	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198503	exon1	c.A85G	p.N29D	.	.	.
CAMSAP1L1	23271	broad.mit.edu	36	1	199089072	199089072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203459	exon13	c.C3649T	p.R1217C	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199289319	199289319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000069	exon30	c.G3686A	p.R1229H	.	.	.
CSRP1	1465	broad.mit.edu	36	1	199721034	199721034	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193572	exon5	c.G505T	p.G169X	.	.	.
NAV1	89796	broad.mit.edu	36	1	200047704	200047704	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167738	exon23	c.A3821G	p.H1274R	.	.	.
KDM5B	10765	broad.mit.edu	36	1	201009030	201009030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006618	exon4	c.G415A	p.E139K	.	.	.
PLA2G2E	30814	broad.mit.edu	36	1	20119486	20119486	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014589	exon4	c.G330A	p.K110K	.	.	.
FMOD	2331	broad.mit.edu	36	1	201583842	201583842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002023	exon2	c.G180A	p.G60G	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201943774	201943774	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001396	exon10	c.C1476T	p.S492S	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203307736	203307736	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005076	exon20	c.G2583A	p.A861A	.	.	.
IL24	11009	broad.mit.edu	36	1	205141618	205141618	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185156	exon5	c.A463T	p.S155C	.	.	.
FCAMR	83953	broad.mit.edu	36	1	205202326	205202326	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032029	exon5	c.T507C	p.R169R	.	.	.
CR1	1378	broad.mit.edu	36	1	205785373	205785373	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000651	exon14	c.C2334T	p.P778P	.	.	.
MUL1	79594	broad.mit.edu	36	1	20700011	20700011	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024544	exon4	c.A818G	p.K273R	.	.	.
MUL1	79594	broad.mit.edu	36	1	20700297	20700297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024544	exon4	c.C532T	p.R178W	.	.	.
IRF6	3664	broad.mit.edu	36	1	208036394	208036394	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006147	exon4	c.A301G	p.K101E	.	.	.
KCNK2	3776	broad.mit.edu	36	1	213409187	213409187	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017424	exon4	c.C486T	p.R162R	.	.	.
USH2A	7399	broad.mit.edu	36	1	213868866	213868866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon71	c.C15432T	p.S5144S	.	.	.
USH2A	7399	broad.mit.edu	36	1	214030176	214030176	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon51	c.T10030C	p.S3344P	.	.	.
USH2A	7399	broad.mit.edu	36	1	214318083	214318083	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon27	c.A5543C	p.N1848T	.	.	.
USH2A	7399	broad.mit.edu	36	1	214415382	214415382	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon21	c.T4462G	p.F1488V	.	.	.
IARS2	55699	broad.mit.edu	36	1	218365269	218365269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018060	exon13	c.C1708T	p.P570S	.	.	.
HLX	3142	broad.mit.edu	36	1	219124481	219124481	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021958	exon4	c.A1279G	p.S427G	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22086687	22086687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005529	exon8	c.G771A	p.R257R	.	.	.
AIDA	64853	broad.mit.edu	36	1	220934187	220934187	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022831	exon3	c.T222C	p.S74S	.	.	.
DISP1	84976	broad.mit.edu	36	1	221245861	221245861	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.A4499G	p.N1500S	.	.	.
LEFTY1	10637	broad.mit.edu	36	1	224141293	224141293	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020997	exon4	c.G858A	p.P286P	.	.	.
ACTA1	58	broad.mit.edu	36	1	227635394	227635394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100	exon2	c.C92T	p.A31V	.	.	.
GALNT2	2590	broad.mit.edu	36	1	228445770	228445770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004481	exon7	c.G703A	p.E235K	.	.	.
DISC1	27185	broad.mit.edu	36	1	229896475	229896475	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164539	exon2	c.G348A	p.A116A	.	.	.
LUZP1	7798	broad.mit.edu	36	1	23291740	23291740	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033631	exon4	c.C1602A	p.S534S	.	.	.
LYST	1130	broad.mit.edu	36	1	234007156	234007156	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon17	c.G5290T	p.G1764C	.	.	.
NID1	4811	broad.mit.edu	36	1	234278685	234278685	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002508	exon2	c.C453T	p.S151S	.	.	.
RYR2	6262	broad.mit.edu	36	1	235796654	235796654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon28	c.G3379A	p.E1127K	.	.	.
RYR2	6262	broad.mit.edu	36	1	235823455	235823455	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon33	c.C4332T	p.G1444G	.	.	.
RYR2	6262	broad.mit.edu	36	1	235885809	235885809	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon53	c.T8031C	p.P2677P	.	.	.
RYR2	6262	broad.mit.edu	36	1	236014219	236014219	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon90	c.A12584G	p.D4195G	.	.	.
CEP170	9859	broad.mit.edu	36	1	241394575	241394575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042405	exon12	c.C3016T	p.R1006C	.	.	.
CEP170	9859	broad.mit.edu	36	1	241430532	241430532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042405	exon6	c.C407T	p.A136V	.	.	.
ADSS	159	broad.mit.edu	36	1	242653913	242653913	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126	exon6	c.C546T	p.C182C	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243597054	243597054	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018012	exon3	c.C761T	p.T254I	.	.	.
TFB2M	64216	broad.mit.edu	36	1	244771118	244771118	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022366	exon8	c.T1029A	p.T343T	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246291046	246291046	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004687	exon1	c.C440A	p.S147Y	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469404	246469404	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017504	exon1	c.T551C	p.L184P	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246502811	246502811	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004695	exon1	c.A929C	p.K310T	.	.	.
OR2T12	127064	broad.mit.edu	36	1	246524851	246524851	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004692	exon1	c.T653C	p.L218P	.	.	.
OR2T2	401992	broad.mit.edu	36	1	246682924	246682924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004136	exon1	c.C203T	p.S68F	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24848050	24848050	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005839	exon4	c.C348T	p.I116I	.	.	.
TMEM57	55219	broad.mit.edu	36	1	25657604	25657604	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018202	exon6	c.C788T	p.A263V	.	.	.
MAN1C1	57134	broad.mit.edu	36	1	25963019	25963019	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020379	exon7	c.G1115T	p.S372I	.	.	.
SEPN1	57190	broad.mit.edu	36	1	26014734	26014734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020451	exon13	c.G1711A	p.A571T	.	.	.
C1orf38	9473	broad.mit.edu	36	1	28081974	28081974	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105556	exon4	c.T1552A	p.L518M	.	.	.
RCC1	1104	broad.mit.edu	36	1	28735866	28735866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001269	exon9	c.C958T	p.R320W	.	.	.
EPB41	2035	broad.mit.edu	36	1	29257692	29257692	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203342	exon14	c.A1223G	p.E408G	.	.	.
EPB41	2035	broad.mit.edu	36	1	29296964	29296964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203342	exon17	c.G1574A	p.S525N	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29503111	29503111	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005704	exon17	c.G2664A	p.T888T	.	.	.
BAI2	576	broad.mit.edu	36	1	31980053	31980053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001703	exon9	c.C1520T	p.T507M	.	.	.
KHDRBS1	10657	broad.mit.edu	36	1	32276223	32276223	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006559	exon6	c.A1106G	p.Y369C	.	.	.
TXLNA	200081	broad.mit.edu	36	1	32428370	32428370	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175852	exon6	c.G896A	p.R299H	.	.	.
TXLNA	200081	broad.mit.edu	36	1	32433305	32433305	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175852	exon11	c.G1563A	p.A521A	.	.	.
TSSK3	81629	broad.mit.edu	36	1	32601807	32601807	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052841	exon2	c.G170A	p.R57Q	.	.	.
S100PBP	64766	broad.mit.edu	36	1	33094179	33094179	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022753	exon7	c.C1180T	p.R394X	.	.	.
PHC2	1912	broad.mit.edu	36	1	33605363	33605363	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198040	exon6	c.G917A	p.G306D	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33954581	33954581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon20	c.C2989T	p.R997W	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3743940	3743940	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon9	c.C895T	p.R299X	.	.	.
MACF1	23499	broad.mit.edu	36	1	39595966	39595966	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon41	c.G5571A	p.R1857R	.	.	.
OXCT2	64064	broad.mit.edu	36	1	40008832	40008832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022120	exon1	c.G683A	p.R228H	.	.	.
TRIT1	54802	broad.mit.edu	36	1	40088417	40088417	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017646	exon5	c.T664C	p.S222P	.	.	.
CTPS	1503	broad.mit.edu	36	1	41235687	41235687	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001905	exon9	c.C907A	p.L303I	.	.	.
MPL	4352	broad.mit.edu	36	1	43578384	43578384	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005373	exon5	c.G853T	p.V285L	.	.	.
ELOVL1	64834	broad.mit.edu	36	1	43602599	43602599	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022821	exon7	c.A601G	p.M201V	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43642700	43642700	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012961	exon4	c.C384T	p.G128G	.	.	.
IPO13	9670	broad.mit.edu	36	1	44194686	44194686	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014652	exon3	c.G929A	p.R310H	.	.	.
B4GALT2	8704	broad.mit.edu	36	1	44228678	44228678	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005417	exon7	c.C1090T	p.R364W	.	.	.
PLK3	1263	broad.mit.edu	36	1	45041563	45041563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004073	exon8	c.G985A	p.V329M	.	.	.
MUTYH	4595	broad.mit.edu	36	1	45567679	45567679	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048173	exon16	c.G1452A	p.Q484Q	.	.	.
TESK2	10420	broad.mit.edu	36	1	45583683	45583683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007170	exon11	c.C1132T	p.R378C	.	.	.
POMGNT1	55624	broad.mit.edu	36	1	46430814	46430814	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017739	exon15	c.A1247G	p.D416G	.	.	.
SLC5A9	200010	broad.mit.edu	36	1	48475994	48475994	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135181	exon12	c.G1424T	p.S475I	.	.	.
TTC39A	22996	broad.mit.edu	36	1	51560034	51560034	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144832	exon2	c.G105T	p.L35L	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52669601	52669601	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009881	exon28	c.G4383A	p.Q1461Q	.	.	.
ACOT11	26027	broad.mit.edu	36	1	54830846	54830846	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147161	exon4	c.G351A	p.R117R	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5855949	5855949	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015102	exon23	c.G3265A	p.D1089N	.	.	.
C1orf87	127795	broad.mit.edu	36	1	60228971	60228971	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152377	exon12	c.C1603A	p.L535I	.	.	.
ALG6	29929	broad.mit.edu	36	1	63675120	63675120	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013339	exon15	c.G1365A	p.L455L	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6663562	6663562	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018198	exon2	c.T195G	p.A65A	.	.	.
DEPDC1	55635	broad.mit.edu	36	1	68727289	68727289	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114120	exon4	c.T488A	p.I163K	.	.	.
CTH	1491	broad.mit.edu	36	1	70662655	70662655	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190463	exon4	c.G460A	p.V154M	 CTH,lung,NS,Substitution - coding silent,-2 	.	.
C1orf173	127254	broad.mit.edu	36	1	74845127	74845127	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon10	c.C1235A	p.S412Y	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75466014	75466014	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152697	exon13	c.A970C	p.T324P	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75472352	75472352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152697	exon12	c.G760A	p.V254I	.	.	.
TNFRSF9	3604	broad.mit.edu	36	1	7922573	7922573	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001561	exon3	c.A69G	p.S23S	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82075266	82075266	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon2	c.T9A	p.S3S	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85944565	85944565	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170670	exon4	c.G667A	p.A223T	.	.	.
RPAP2	79871	broad.mit.edu	36	1	92538346	92538346	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024813	exon2	c.A81G	p.K27K	.	.	.
ABCA4	24	broad.mit.edu	36	1	94349630	94349630	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon3	c.C254T	p.P85L	.	.	.
SLC44A3	126969	broad.mit.edu	36	1	95065743	95065743	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114106	exon4	c.A371G	p.Q124R	.	.	.
FRRS1	391059	broad.mit.edu	36	1	99947219	99947219	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013660	exon17	c.A1704T	p.G568G	.	.	.
SF3B4	10262	broad.mit.edu	36	1	148162186	148162186	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005850	exon6	c.1147delC	p.H383fs	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155760814	155760814	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031281	exon10	c.2118delC	p.P706fs	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202495034	202495034	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014935	exon8	c.982delG	p.V328fs	.	.	.
ARV1	64801	broad.mit.edu	36	1	229198190	229198190	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	-	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022786	exon4	c.510delA	p.A170fs	.	.	.
OR2W3	343171	broad.mit.edu	36	1	246126356	246126356	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001957	exon1	c.845delC	p.T282fs	.	.	.
GBP3	2635	broad.mit.edu	36	1	89249248	89249248	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018284	exon8	c.1289delG	p.G430fs	.	.	.
SLC44A3	126969	broad.mit.edu	36	1	95130520	95130520	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114106	exon14	c.1716delT	p.A572fs	.	.	.
C1orf157	284573	broad.mit.edu	36	1	202273239	202273239	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PSMF1	9491	broad.mit.edu	36	20	1054274	1054274	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006814	exon2	c.G263T	p.S88I	.	.	.
SNPH	9751	broad.mit.edu	36	20	1229257	1229257	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014723	exon5	c.G210A	p.P70P	.	.	.
TASP1	55617	broad.mit.edu	36	20	13319019	13319019	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017714	exon14	c.C1251T	p.S417S	.	.	.
TASP1	55617	broad.mit.edu	36	20	13487709	13487709	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017714	exon8	c.A621G	p.E207E	.	.	.
RRBP1	6238	broad.mit.edu	36	20	17543477	17543477	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042576	exon25	c.G2800A	p.A934T	.	.	.
PDYN	5173	broad.mit.edu	36	20	1909062	1909062	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190892	exon3	c.G672A	p.K224K	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19444186	19444186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020689	exon3	c.C326T	p.A109V	.	.	.
RIN2	54453	broad.mit.edu	36	20	19904307	19904307	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018993	exon7	c.C1638T	p.C546C	.	.	.
TGM3	7053	broad.mit.edu	36	20	2238899	2238899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003245	exon3	c.C257T	p.A86V	.	.	.
CD93	22918	broad.mit.edu	36	20	23013992	23013992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012072	exon1	c.G838A	p.D280N	.	.	.
CD93	22918	broad.mit.edu	36	20	23014390	23014390	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012072	exon1	c.A440T	p.D147V	.	.	.
GZF1	64412	broad.mit.edu	36	20	23293612	23293612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022482	exon1	c.C592T	p.P198S	.	.	.
GGTLC1	92086	broad.mit.edu	36	20	23914810	23914810	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178312	exon3	c.C207T	p.S69S	.	.	.
SNRPB	6628	broad.mit.edu	36	20	2396273	2396273	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003091	exon2	c.T135C	p.C45C	.	.	.
PYGB	5834	broad.mit.edu	36	20	25224304	25224304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002862	exon19	c.C2377T	p.R793W	.	.	.
NINL	22981	broad.mit.edu	36	20	25433550	25433550	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025176	exon6	c.G682A	p.V228I	.	.	.
NRSN2	80023	broad.mit.edu	36	20	282171	282171	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024958	exon4	c.G507A	p.Q169Q	.	.	.
DEFB119	245932	broad.mit.edu	36	20	29428898	29428898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153289	exon2	c.C67T	p.R23C	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30482860	30482860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015338	exon8	c.G794A	p.R265H	.	.	.
C20orf112	140688	broad.mit.edu	36	20	30504950	30504950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080616	exon5	c.C583T	p.R195C	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32792128	32792128	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014071	exon11	c.A5593G	p.M1865V	.	.	.
EDEM2	55741	broad.mit.edu	36	20	33167325	33167325	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018217	exon11	c.C1309A	p.L437I	.	.	.
CEP250	11190	broad.mit.edu	36	20	33518261	33518261	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon8	c.G549A	p.E183E	.	.	.
CPNE1	8904	broad.mit.edu	36	20	33683965	33683965	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152927	exon4	c.A197G	p.Y66C	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34242106	34242106	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012156	exon11	c.T1273C	p.Y425H	.	.	.
C20orf118	140711	broad.mit.edu	36	20	34940887	34940887	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080628	exon3	c.C219A	p.T73T	.	.	.
ADAM33	80332	broad.mit.edu	36	20	3602770	3602770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025220	exon8	c.C679T	p.H227Y	.	.	.
TGM2	7052	broad.mit.edu	36	20	36200146	36200146	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198951	exon10	c.C1398A	p.A466A	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36790513	36790513	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080552	exon2	c.C1395T	p.G465G	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36898180	36898180	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172735	exon2	c.C198T	p.F66F	.	.	.
CDC25B	994	broad.mit.edu	36	20	3729905	3729905	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004358	exon8	c.T668A	p.L223H	.	.	.
CHD6	84181	broad.mit.edu	36	20	39575045	39575045	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon5	c.C706T	p.R236X	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40146835	40146835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon30	c.C4094T	p.T1365M	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40164242	40164242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon27	c.G3707A	p.C1236Y	.	.	.
L3MBTL1	26013	broad.mit.edu	36	20	41596137	41596137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032107	exon14	c.C1523T	p.A508V	.	.	.
WFDC5	149708	broad.mit.edu	36	20	43172470	43172470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145652	exon3	c.C352T	p.R118W	.	.	.
SEMG1	6406	broad.mit.edu	36	20	43270395	43270395	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003007	exon2	c.A1043G	p.Y348C	.	.	.
SNX21	90203	broad.mit.edu	36	20	43897130	43897130	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152897	exon3	c.A415G	p.N139D	.	.	.
MMP9	4318	broad.mit.edu	36	20	44071055	44071055	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004994	exon1	c.T83C	p.L28P	.	.	.
SLC13A3	64849	broad.mit.edu	36	20	44675579	44675579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193339	exon2	c.G304A	p.A102T	.	.	.
PREX1	57580	broad.mit.edu	36	20	46758345	46758345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon6	c.G643A	p.G215S	.	.	.
CSE1L	1434	broad.mit.edu	36	20	47116430	47116430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001316	exon5	c.G452A	p.R151H	.	.	.
DDX27	55661	broad.mit.edu	36	20	47286359	47286359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017895	exon14	c.G1685A	p.R562H	.	.	.
SLC23A2	9962	broad.mit.edu	36	20	4861125	4861125	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203327	exon3	c.G84A	p.K28K	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51305730	51305730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173485	exon2	c.G2326A	p.E776K	.	.	.
MC3R	4159	broad.mit.edu	36	20	54258254	54258254	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019888	exon1	c.C948T	p.G316G	.	.	.
RBM38	55544	broad.mit.edu	36	20	55416115	55416115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017495	exon4	c.G526A	p.A176T	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55613217	55613217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160417	exon8	c.G1105A	p.D369N	.	.	.
TH1L	51497	broad.mit.edu	36	20	56998089	56998089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198976	exon6	c.C683T	p.A228V	.	.	.
CTSZ	1522	broad.mit.edu	36	20	57010067	57010067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001336	exon3	c.C335T	p.A112V	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57953068	57953068	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190826	exon5	c.G675A	p.K225K	.	.	.
CHGB	1114	broad.mit.edu	36	20	5851182	5851182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001819	exon4	c.G392A	p.R131Q	.	.	.
DIDO1	11083	broad.mit.edu	36	20	61012777	61012777	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022105	exon3	c.C633T	p.G211G	.	.	.
MYT1	4661	broad.mit.edu	36	20	62319025	62319025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004535	exon11	c.G1793A	p.R598H	.	.	.
C20orf54	113278	broad.mit.edu	36	20	692381	692381	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033409	exon3	c.G834A	p.T278T	.	.	.
ANGPT4	51378	broad.mit.edu	36	20	808412	808412	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015985	exon6	c.G1031T	p.R344L	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8730728	8730728	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182734	exon32	c.C3449T	p.S1150L	.	.	.
SPAG4	6676	broad.mit.edu	36	20	33672217	33672217	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003116	exon12	c.1173delC	p.D391fs	.	.	.
C20orf200	253868	broad.mit.edu	36	20	60554188	60554188	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C20orf200	253868	broad.mit.edu	36	20	60554264	60554264	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LIPI	149998	broad.mit.edu	36	21	14476035	14476035	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198996	exon4	c.G621A	p.G207G	.	.	.
USP25	29761	broad.mit.edu	36	21	16120526	16120526	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013396	exon13	c.T1437C	p.S479S	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18620703	18620703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002772	exon16	c.C1838T	p.T613I	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21618650	21618650	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004540	exon6	c.C696T	p.C232C	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27224238	27224238	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007038	exon7	c.C2063G	p.T688S	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29300704	29300704	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016940	exon5	c.G865A	p.G289R	.	.	.
HUNK	30811	broad.mit.edu	36	21	32293209	32293209	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014586	exon11	c.G1986A	p.R662R	.	.	.
C21orf63	59271	broad.mit.edu	36	21	32747504	32747504	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058187	exon2	c.A174G	p.K58K	.	.	.
UMODL1	89766	broad.mit.edu	36	21	42416183	42416183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199527	exon16	c.G3169A	p.A1057T	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44611067	44611067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003307	exon4	c.C426T	p.Y142Y	.	.	.
C21orf29	54084	broad.mit.edu	36	21	44771736	44771736	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144991	exon7	c.G1016T	p.G339V	.	.	.
PCNT	5116	broad.mit.edu	36	21	46597636	46597636	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006031	exon10	c.G1647A	p.R549R	.	.	.
OR11H1	81061	broad.mit.edu	36	22	14829126	14829126	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005239	exon1	c.C679A	p.L227I	.	.	.
DGCR8	54487	broad.mit.edu	36	22	18453954	18453954	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190326	exon2	c.T468C	p.S156S	.	.	.
ZNF74	7625	broad.mit.edu	36	22	19085613	19085613	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003426	exon4	c.C294T	p.G98G	.	.	.
HIC2	23119	broad.mit.edu	36	22	20130926	20130926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015094	exon3	c.G1742A	p.R581H	.	.	.
PPIL2	23759	broad.mit.edu	36	22	20366780	20366780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148176	exon8	c.G442A	p.E148K	.	.	.
BCR	613	broad.mit.edu	36	22	21943759	21943759	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021574	exon6	c.C1901T	p.T634M	.	.	.
BCR	613	broad.mit.edu	36	22	21957225	21957225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021574	exon10	c.C2243T	p.T748M	.	.	.
LRP5L	91355	broad.mit.edu	36	22	24083241	24083241	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135772	exon4	c.C419A	p.A140D	.	.	.
GAL3ST1	9514	broad.mit.edu	36	22	29281318	29281318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004861	exon4	c.C894T	p.T298T	.	.	.
SFI1	9814	broad.mit.edu	36	22	30301354	30301354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014775	exon10	c.C1060T	p.R354C	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30569747	30569747	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014662	exon29	c.A2723G	p.K908R	.	.	.
SLC5A4	6527	broad.mit.edu	36	22	30973472	30973472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014227	exon5	c.C403T	p.R135W	.	.	.
MCM5	4174	broad.mit.edu	36	22	34138651	34138652	+	Missense_Mutation	DNP	GC	TT	TT	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006739	exon8	c.1068_1069TT	.	.	.	.
RBFOX2	23543	broad.mit.edu	36	22	34470188	34470188	+	Nonstop_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014309	exon12	c.A1104T	p.X368C	.	.	.
MYH9	4627	broad.mit.edu	36	22	35075203	35075203	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon2	c.T25C	p.Y9H	.	.	.
EIF3D	8664	broad.mit.edu	36	22	35245476	35245476	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003753	exon8	c.G633A	p.T211T	.	.	.
NCF4	4689	broad.mit.edu	36	22	35601986	35601986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013416	exon8	c.G973A	p.A325T	.	.	.
DDX17	10521	broad.mit.edu	36	22	37212331	37212331	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098504	exon13	c.A1751T	p.D584V	.	.	.
RPL3	6122	broad.mit.edu	36	22	38039596	38039596	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033853	exon8	c.A889G	p.T297A	.	.	.
SLC25A17	10478	broad.mit.edu	36	22	39503021	39503021	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006358	exon7	c.A662G	p.Y221C	.	.	.
SLC25A17	10478	broad.mit.edu	36	22	39505050	39505050	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006358	exon5	c.T360A	p.T120T	.	.	.
EP300	2033	broad.mit.edu	36	22	39875843	39875843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001429	exon14	c.C2512T	p.R838C	.	.	.
TEF	7008	broad.mit.edu	36	22	40113311	40113311	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145398	exon2	c.G78T	p.K26N	.	.	.
POLR3H	171568	broad.mit.edu	36	22	40258680	40258680	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138338	exon4	c.T224C	p.V75A	.	.	.
XRCC6	2547	broad.mit.edu	36	22	40382873	40382873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001469	exon10	c.C1312T	p.P438S	.	.	.
XRCC6	2547	broad.mit.edu	36	22	40389732	40389732	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001469	exon13	c.G1797A	p.L599L	.	.	.
TCF20	6942	broad.mit.edu	36	22	40938859	40938859	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005650	exon1	c.T2397C	p.A799A	.	.	.
MCAT	27349	broad.mit.edu	36	22	41859249	41859249	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173467	exon4	c.A917G	p.Y306C	.	.	.
SAMM50	25813	broad.mit.edu	36	22	42703345	42703345	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015380	exon8	c.G726A	p.A242A	.	.	.
PARVG	64098	broad.mit.edu	36	22	42933629	42933629	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137606	exon14	c.C986G	p.A329G	.	.	.
SMC1B	27127	broad.mit.edu	36	22	44168218	44168218	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148674	exon9	c.A1505G	p.E502G	.	.	.
BRD1	23774	broad.mit.edu	36	22	48603354	48603354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014577	exon1	c.G616A	p.E206K	.	.	.
SELO	83642	broad.mit.edu	36	22	48991238	48991238	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031454	exon5	c.G1122A	p.A374A	.	.	.
UPB1	51733	broad.mit.edu	36	22	23226213	23226213	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016327	exon2	c.243delC	p.I81fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179206461	179206462	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133432	exon61	c.16050_16051insA	p.K5350fs	.	.	.
NMUR1	10316	broad.mit.edu	36	2	232101876	232101877	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006056	exon2	c.100_101insG	p.H34fs	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25358934	25358935	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175630	exon4	c.328_329insG	p.Q110fs	.	.	.
CYP1B1	1545	broad.mit.edu	36	2	38155167	38155168	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000104	exon2	c.869_870insC	p.R290fs	.	.	.
CHST10	9486	broad.mit.edu	36	2	100376468	100376468	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004854	exon7	c.A742T	p.N248Y	.	.	.
RRM2	6241	broad.mit.edu	36	2	10182361	10182361	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165931	exon5	c.A682G	p.M228V	.	.	.
SLC9A2	6549	broad.mit.edu	36	2	102685330	102685330	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003048	exon9	c.G1782A	p.T594T	.	.	.
ODC1	4953	broad.mit.edu	36	2	10502128	10502128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002539	exon4	c.G199A	p.A67T	.	.	.
PDIA6	10130	broad.mit.edu	36	2	10848363	10848363	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005742	exon7	c.C632T	p.T211M	.	.	.
CHCHD5	84269	broad.mit.edu	36	2	113060151	113060151	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032309	exon2	c.C132A	p.C44X	.	.	.
DDX18	8886	broad.mit.edu	36	2	118299016	118299016	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006773	exon9	c.T1237A	p.F413I	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11842482	11842482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon9	c.G1270A	p.A424T	.	.	.
GLI2	2736	broad.mit.edu	36	2	121401411	121401411	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005270	exon2	c.G153A	p.P51P	.	.	.
MYO7B	4648	broad.mit.edu	36	2	128052279	128052279	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080527	exon9	c.C951T	p.D317D	.	.	.
SAP130	79595	broad.mit.edu	36	2	128460865	128460865	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145928	exon14	c.G2000T	p.R667L	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133199796	133199796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207481	exon17	c.G1630A	p.A544T	.	.	.
YSK4	80122	broad.mit.edu	36	2	135438950	135438950	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025052	exon10	c.G3927C	p.Q1309H	.	.	.
NXPH2	11249	broad.mit.edu	36	2	139145631	139145631	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007226	exon2	c.G126A	p.T42T	.	.	.
ARHGAP15	55843	broad.mit.edu	36	2	143629677	143629677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018460	exon2	c.G148A	p.G50R	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149543713	149543713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004522	exon12	c.C1253T	p.A418V	.	.	.
RIF1	55183	broad.mit.edu	36	2	152029861	152029861	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177664	exon30	c.A5581G	p.T1861A	.	.	.
NEB	4703	broad.mit.edu	36	2	152054820	152054820	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon181	c.A25315C	p.T8439P	.	.	.
CACNB4	785	broad.mit.edu	36	2	152406669	152406669	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005746	exon13	c.G1242A	p.G414G	.	.	.
RPRM	56475	broad.mit.edu	36	2	154043310	154043310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019845	exon1	c.G16A	p.G6S	.	.	.
GPD2	2820	broad.mit.edu	36	2	157133635	157133635	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083112	exon10	c.A1218T	p.T406T	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	159947459	159947459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013450	exon25	c.C3862T	p.R1288C	.	.	.
FAP	2191	broad.mit.edu	36	2	162782784	162782784	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004460	exon9	c.C720T	p.G240G	.	.	.
KCNH7	90134	broad.mit.edu	36	2	162999968	162999968	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon7	c.T1919A	p.V640D	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165705689	165705689	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon13	c.T1737G	p.S579R	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167809169	167809169	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.A2355C	p.E785D	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167815383	167815383	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.A8569G	p.T2857A	.	.	.
LRP2	4036	broad.mit.edu	36	2	169738784	169738784	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon56	c.C10905T	p.C3635C	.	.	.
LRP2	4036	broad.mit.edu	36	2	169746346	169746346	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon52	c.C10027T	p.R3343C	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170136726	170136726	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon2	c.T60G	p.A20A	.	.	.
GAD1	2571	broad.mit.edu	36	2	171395943	171395943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000817	exon5	c.G542A	p.R181H	.	.	.
GAD1	2571	broad.mit.edu	36	2	171417492	171417492	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000817	exon13	c.C1207A	p.P403T	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173563871	173563871	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007023	exon15	c.A1462G	p.N488D	.	.	.
SP3	6670	broad.mit.edu	36	2	174528610	174528610	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172712	exon4	c.C867A	p.A289A	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178191229	178191229	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152275	exon1	c.A447G	p.G149G	.	.	.
RBM45	129831	broad.mit.edu	36	2	178699022	178699022	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152945	exon9	c.C1298T	p.A433V	.	.	.
TTN	7273	broad.mit.edu	36	2	179106061	179106061	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon186	c.T76331A	p.F25444Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179120114	179120114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon168	c.C67188T	p.C22396C	.	.	.
TTN	7273	broad.mit.edu	36	2	179120266	179120266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon168	c.C67036T	p.L22346F	.	.	.
TTN	7273	broad.mit.edu	36	2	179143993	179143993	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.A47916C	p.R15972S	.	.	.
TTN	7273	broad.mit.edu	36	2	179148775	179148775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C43134T	p.G14378G	.	.	.
TTN	7273	broad.mit.edu	36	2	179174400	179174400	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon115	c.A28374G	p.G9458G	.	.	.
TTN	7273	broad.mit.edu	36	2	179177067	179177067	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon110	c.A27397G	p.I9133V	.	.	.
TTN	7273	broad.mit.edu	36	2	179178202	179178202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon108	c.C26752T	p.P8918S	.	.	.
TTN	7273	broad.mit.edu	36	2	179189508	179189508	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon85	c.T21060A	p.S7020R	.	.	.
TTN	7273	broad.mit.edu	36	2	179224878	179224878	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon159	c.A32055G	p.P10685P	.	.	.
TTN	7273	broad.mit.edu	36	2	179246672	179246672	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon147	c.G30816A	p.V10272V	.	.	.
TTN	7273	broad.mit.edu	36	2	179248066	179248066	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon145	c.G30654T	p.K10218N	.	.	.
TTN	7273	broad.mit.edu	36	2	179277482	179277482	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon102	c.G26230A	p.E8744K	.	.	.
TTN	7273	broad.mit.edu	36	2	179352372	179352372	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon23	c.G3792T	p.K1264N	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179409880	179409880	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173648	exon23	c.G4311A	p.E1437E	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1822099	1822099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon21	c.C2903T	p.A968V	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183596790	183596790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013436	exon2	c.C208T	p.R70C	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185509013	185509013	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194250	exon4	c.T645C	p.S215S	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18628939	18628939	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033253	exon5	c.G787A	p.G263S	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189571285	189571285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000090	exon28	c.G1972A	p.E658K	.	.	.
ASNSD1	54529	broad.mit.edu	36	2	190240086	190240086	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019048	exon4	c.G983A	p.G328E	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190249579	190249579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144708	exon2	c.C118T	p.R40W	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1905671	1905671	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon10	c.G877T	p.D293Y	.	.	.
STAT1	6772	broad.mit.edu	36	2	191549924	191549924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007315	exon22	c.G1946A	p.R649H	.	.	.
MATN3	4148	broad.mit.edu	36	2	20069427	20069427	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002381	exon2	c.C349T	p.P117S	.	.	.
CASP8	841	broad.mit.edu	36	2	201858210	201858210	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033356	exon7	c.T1184C	p.V395A	.	.	.
TRAK2	66008	broad.mit.edu	36	2	201971308	201971308	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015049	exon6	c.G495T	p.Q165H	.	.	.
ALS2	57679	broad.mit.edu	36	2	202334673	202334673	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135745	exon4	c.G289T	p.A97S	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203709643	203709643	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114132	exon28	c.A4379G	p.D1460G	.	.	.
NRP2	8828	broad.mit.edu	36	2	206316378	206316378	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201266	exon9	c.G1498T	p.G500C	.	.	.
CRYGB	1419	broad.mit.edu	36	2	208718817	208718817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005210	exon2	c.C178T	p.R60C	.	.	.
C2orf80	389073	broad.mit.edu	36	2	208745038	208745038	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099334	exon7	c.C373T	p.R125X	.	.	.
IKZF2	22807	broad.mit.edu	36	2	213629960	213629960	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016260	exon4	c.C248T	p.P83L	.	.	.
FN1	2335	broad.mit.edu	36	2	215943359	215943359	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon39	c.C6213T	p.G2071G	.	.	.
FN1	2335	broad.mit.edu	36	2	215948211	215948211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon36	c.G5585A	p.R1862H	.	.	.
FN1	2335	broad.mit.edu	36	2	215952230	215952230	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon32	c.C4947T	p.S1649S	.	.	.
TNS1	7145	broad.mit.edu	36	2	218391514	218391514	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022648	exon24	c.G3474A	p.P1158P	.	.	.
TNS1	7145	broad.mit.edu	36	2	218421455	218421455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022648	exon17	c.C1655T	p.P552L	.	.	.
TTLL4	9654	broad.mit.edu	36	2	219312046	219312046	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014640	exon3	c.G1403A	p.R468H	.	.	.
TTLL4	9654	broad.mit.edu	36	2	219325811	219325811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014640	exon17	c.C3058T	p.R1020C	.	.	.
PRKAG3	53632	broad.mit.edu	36	2	219403041	219403041	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017431	exon4	c.C537A	p.P179P	.	.	.
EPHA4	2043	broad.mit.edu	36	2	222055564	222055564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004438	exon5	c.G1070A	p.R357H	.	.	.
PAX3	5077	broad.mit.edu	36	2	222775097	222775097	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127366	exon8	c.C1227T	p.Y409Y	.	.	.
SH3YL1	26751	broad.mit.edu	36	2	224178	224178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015677	exon5	c.C386T	p.A129V	.	.	.
WDFY1	57590	broad.mit.edu	36	2	224468541	224468541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020830	exon7	c.G649A	p.G217R	.	.	.
MRPL44	65080	broad.mit.edu	36	2	224530471	224530471	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022915	exon1	c.A38G	p.H13R	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227624066	227624066	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon33	c.C3021T	p.Y1007Y	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227635515	227635515	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon26	c.C2031T	p.G677G	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227675754	227675754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon15	c.C925T	p.P309S	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228590741	228590741	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.T3073A	p.S1025T	.	.	.
SP140	11262	broad.mit.edu	36	2	230860900	230860900	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007237	exon18	c.T1695C	p.A565A	.	.	.
DGKD	8527	broad.mit.edu	36	2	234024362	234024362	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152879	exon17	c.T2094C	p.S698S	.	.	.
UGT1A5	54579	broad.mit.edu	36	2	234341674	234341674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001072	exon4	c.G1151A	p.G384D	.	.	.
SH3BP4	23677	broad.mit.edu	36	2	235615871	235615871	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014521	exon4	c.C1719A	p.I573I	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236371243	236371243	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037131	exon7	c.C775A	p.Q259K	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236456744	236456744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037131	exon10	c.G1067A	p.R356Q	.	.	.
IQCA1	79781	broad.mit.edu	36	2	236941654	236941654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024726	exon14	c.C1591T	p.R531C	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237961303	237961303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057167	exon3	c.G355A	p.A119T	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238336058	238336058	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137552	exon11	c.T963C	p.T321T	.	.	.
KIF1A	547	broad.mit.edu	36	2	241349422	241349422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004321	exon23	c.G2135A	p.R712Q	.	.	.
SNED1	25992	broad.mit.edu	36	2	241670383	241670383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080437	exon29	c.G4052A	p.R1351H	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241844381	241844381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005336	exon7	c.G764A	p.R255H	.	.	.
FARP2	9855	broad.mit.edu	36	2	242063982	242063982	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014808	exon19	c.A2169G	p.L723L	.	.	.
PREB	10113	broad.mit.edu	36	2	27208708	27208708	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013388	exon6	c.C820A	p.L274M	.	.	.
IFT172	26160	broad.mit.edu	36	2	27557446	27557446	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon8	c.C756T	p.G252G	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27657255	27657255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.G4312A	p.A1438T	.	.	.
ALK	238	broad.mit.edu	36	2	29404827	29404827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon6	c.C1307T	p.A436V	.	.	.
EHD3	30845	broad.mit.edu	36	2	31337139	31337139	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014600	exon4	c.C762T	p.I254I	.	.	.
XDH	7498	broad.mit.edu	36	2	31456271	31456271	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000379	exon13	c.T1208C	p.I403T	.	.	.
SPAST	6683	broad.mit.edu	36	2	32194369	32194369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199436	exon5	c.G869A	p.S290N	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328437	32328437	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.G2000C	p.R667P	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33475853	33475853	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000627	exon29	c.G4006A	p.D1336N	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37113312	37113312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019024	exon22	c.G3325A	p.A1109T	.	.	.
CEBPZ	10153	broad.mit.edu	36	2	37297038	37297038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005760	exon7	c.C2236T	p.P746S	.	.	.
DHX57	90957	broad.mit.edu	36	2	38903809	38903809	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198963	exon17	c.C3121T	p.R1041X	.	.	.
SOS1	6654	broad.mit.edu	36	2	39103846	39103846	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005633	exon10	c.T1227C	p.S409S	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40196034	40196034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112800	exon9	c.C2770T	p.R924W	.	.	.
MSH6	2956	broad.mit.edu	36	2	47879996	47879996	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.C1370A	p.A457D	.	.	.
MSH6	2956	broad.mit.edu	36	2	47881470	47881470	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.A2844G	p.E948E	.	.	.
MSH6	2956	broad.mit.edu	36	2	47884174	47884174	+	Missense_Mutation	SNP	G	A	A	rs63750253	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon5	c.G3284A	p.R1095H	.	.	.
KLRAQ1	129285	broad.mit.edu	36	2	48540500	48540500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135629	exon5	c.G479A	p.G160D	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50024433	50024433	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138735	exon5	c.A934G	p.T312A	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54730286	54730286	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003128	exon26	c.C5233T	p.R1745X	.	.	.
RTN4	57142	broad.mit.edu	36	2	55068201	55068201	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020532	exon4	c.A3151G	p.T1051A	.	.	.
REL	5966	broad.mit.edu	36	2	61003145	61003145	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002908	exon11	c.T1831C	p.S611P	.	.	.
USP34	9736	broad.mit.edu	36	2	61270951	61270951	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon78	c.A9832G	p.N3278D	.	.	.
ACTR2	10097	broad.mit.edu	36	2	65331673	65331673	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005386	exon5	c.T399C	p.F133F	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394173	65394173	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181784	exon6	c.G1223T	p.R408M	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394673	65394673	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181784	exon6	c.G723A	p.P241P	.	.	.
GKN2	200504	broad.mit.edu	36	2	69026079	69026079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182536	exon6	c.C480T	p.V160V	.	.	.
CD207	50489	broad.mit.edu	36	2	70916171	70916171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015717	exon2	c.C149T	p.T50M	.	.	.
MPHOSPH10	10199	broad.mit.edu	36	2	71214166	71214166	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005791	exon2	c.T720C	p.I240I	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74308469	74308469	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021196	exon21	c.C2892A	p.G964G	.	.	.
WBP1	23559	broad.mit.edu	36	2	74540613	74540613	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012477	exon3	c.T278A	p.I93N	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74614560	74614560	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032603	exon13	c.C2145T	p.C715C	.	.	.
GGCX	2677	broad.mit.edu	36	2	85632529	85632529	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000821	exon11	c.T1526C	p.L509P	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8851486	8851486	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020738	exon12	c.G1181A	p.G394E	.	.	.
RPIA	22934	broad.mit.edu	36	2	88830621	88830621	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144563	exon9	c.G847A	p.D283N	.	.	.
ITGB1BP1	9270	broad.mit.edu	36	2	9471759	9471759	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022334	exon3	c.A150G	p.S50S	.	.	.
YWHAQ	10971	broad.mit.edu	36	2	9687950	9687950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006826	exon2	c.C83T	p.A28V	.	.	.
ACTR1B	10120	broad.mit.edu	36	2	97642299	97642299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005735	exon4	c.G263A	p.R88H	.	.	.
LYG2	254773	broad.mit.edu	36	2	99228287	99228287	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175735	exon4	c.T251C	p.I84T	.	.	.
EIF5B	9669	broad.mit.edu	36	2	99361917	99361917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015904	exon11	c.C1846T	p.R616W	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196445275	196445278	+	Frame_Shift_Del	DEL	ACAA	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018897	exon40	c.6574_6577del	p.2192_2193del	.	.	.
SP140	11262	broad.mit.edu	36	2	230867269	230867269	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007237	exon21	c.2008delA	p.K670fs	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71503607	71503607	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014497	exon22	c.3455delA	p.E1152fs	.	.	.
TTC31	64427	broad.mit.edu	36	2	74571959	74571959	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022492	exon7	c.633delC	p.S211fs	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10081444	10081444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033084	exon23	c.G2053A	p.G685R	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101051777	101051777	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182909	exon5	c.G1433A	p.R478Q	.	.	.
TFG	10342	broad.mit.edu	36	3	101950009	101950009	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006070	exon8	c.C1147T	p.R383C	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10255571	10255571	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001570	exon12	c.A1613T	p.D538V	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102853008	102853008	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014415	exon11	c.C2854A	p.L952I	.	.	.
FAM55C	91775	broad.mit.edu	36	3	103008637	103008637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134456	exon6	c.C899T	p.T300I	.	.	.
BBX	56987	broad.mit.edu	36	3	108974958	108974958	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142568	exon11	c.A1700C	p.E567A	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10955004	10955004	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014229	exon14	c.G1815T	p.R605R	.	.	.
MYH15	22989	broad.mit.edu	36	3	109666251	109666251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon16	c.C1715T	p.S572L	.	.	.
SLC6A1	6529	broad.mit.edu	36	3	11051346	11051346	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003042	exon15	c.G1657A	p.A553T	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113841100	113841100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon2	c.C343T	p.R115C	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115438030	115438030	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007136	exon1	c.C582T	p.C194C	.	.	.
TIGIT	201633	broad.mit.edu	36	3	115497376	115497376	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173799	exon2	c.C356G	p.T119S	.	.	.
C3orf15	89876	broad.mit.edu	36	3	120927759	120927759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033364	exon7	c.G734A	p.R245H	.	.	.
GSK3B	2932	broad.mit.edu	36	3	121114243	121114243	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002093	exon6	c.T713C	p.I238T	.	.	.
GTF2E1	2960	broad.mit.edu	36	3	121982994	121982994	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005513	exon5	c.A1307G	p.D436G	.	.	.
HCLS1	3059	broad.mit.edu	36	3	122835765	122835765	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005335	exon10	c.G882T	p.L294L	.	.	.
IQCB1	9657	broad.mit.edu	36	3	122983357	122983357	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023570	exon13	c.C1333G	p.R445G	.	.	.
PARP14	54625	broad.mit.edu	36	3	123901888	123901888	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017554	exon6	c.G1797A	p.K599K	.	.	.
PARP14	54625	broad.mit.edu	36	3	123921801	123921801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017554	exon15	c.C4817A	p.P1606H	.	.	.
MYLK	4638	broad.mit.edu	36	3	124935304	124935304	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053025	exon10	c.A1229G	p.D410G	.	.	.
KALRN	8997	broad.mit.edu	36	3	125876015	125876015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024660	exon49	c.G7057A	p.V2353I	.	.	.
OSBPL11	114885	broad.mit.edu	36	3	126753777	126753777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022776	exon9	c.C1592T	p.A531V	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127359002	127359002	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012190	exon4	c.C402T	p.I134I	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127635755	127635755	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182628	exon15	c.G1469A	p.R490Q	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129124602	129124602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207335	exon1	c.G8A	p.C3Y	.	.	.
IQSEC1	9922	broad.mit.edu	36	3	12924980	12924980	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014869	exon12	c.A2666G	p.Q889R	.	.	.
RUVBL1	8607	broad.mit.edu	36	3	129314433	129314433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003707	exon3	c.C349T	p.R117C	.	.	.
COPG	22820	broad.mit.edu	36	3	130470143	130470143	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016128	exon17	c.G1764A	p.E588E	.	.	.
IFT122	55764	broad.mit.edu	36	3	130721220	130721220	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052990	exon26	c.A3261G	p.S1087S	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131775786	131775786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon7	c.C3274T	p.P1092S	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131917999	131917999	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon9	c.T2262C	p.G754G	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133732550	133732550	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon55	c.C6544T	p.R2182C	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133841055	133841055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032169	exon5	c.C673T	p.L225L	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133861207	133861207	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032169	exon1	c.G79A	p.A27T	.	.	.
A4GNT	51146	broad.mit.edu	36	3	139326359	139326359	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016161	exon3	c.C460A	p.R154S	.	.	.
PRR23B	389151	broad.mit.edu	36	3	140221677	140221677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013650	exon1	c.G517A	p.G173S	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141767677	141767677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022131	exon17	c.C2760T	p.D920D	.	.	.
SR140	23350	broad.mit.edu	36	3	144228732	144228732	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080415	exon14	c.G1326A	p.G442G	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152644218	152644218	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178822	exon5	c.T5207C	p.V1736A	.	.	.
SH3BP5	9467	broad.mit.edu	36	3	15278725	15278725	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018009	exon5	c.A100G	p.M34V	.	.	.
MBNL1	4154	broad.mit.edu	36	3	153615496	153615496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207293	exon2	c.G251A	p.R84H	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155426347	155426347	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015595	exon11	c.G1948A	p.V650I	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155455281	155455281	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015595	exon14	c.T2451C	p.R817R	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156681949	156681949	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon23	c.C4584T	p.G1528G	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156682595	156682595	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon23	c.G3938C	p.G1313A	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156683452	156683452	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon23	c.C3081T	p.S1027S	.	.	.
VEPH1	79674	broad.mit.edu	36	3	158695766	158695766	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167911	exon2	c.T67G	p.L23V	.	.	.
SERPINI2	5276	broad.mit.edu	36	3	168665766	168665766	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006217	exon5	c.A788G	p.E263G	.	.	.
TNIK	23043	broad.mit.edu	36	3	172340901	172340901	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161565	exon13	c.G1313T	p.R438M	.	.	.
TBC1D5	9779	broad.mit.edu	36	3	17324620	17324620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134380	exon14	c.C1006T	p.R336W	.	.	.
NCEH1	57552	broad.mit.edu	36	3	173834404	173834404	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146276	exon5	c.A902G	p.D301G	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	 PIK3CA,breast,NS,Substitution - Missense,0 	.	.
KLHL24	54800	broad.mit.edu	36	3	184851131	184851131	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017644	exon3	c.A293G	p.D98G	.	.	.
AP2M1	1173	broad.mit.edu	36	3	185382399	185382399	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025205	exon8	c.G827A	p.R276H	.	.	.
PSMD2	5708	broad.mit.edu	36	3	185509207	185509207	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002808	exon21	c.C2562A	p.G854G	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185528329	185528329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182917	exon25	c.G3801A	p.V1267V	.	.	.
AHSG	197	broad.mit.edu	36	3	187821311	187821311	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001622	exon7	c.G1002A	p.S334S	.	.	.
RTP1	132112	broad.mit.edu	36	3	188400187	188400187	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153708	exon2	c.T427A	p.S143T	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19364277	19364277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144633	exon5	c.G627A	p.K209K	.	.	.
OPA1	4976	broad.mit.edu	36	3	194863353	194863353	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130832	exon24	c.A2350G	p.N784D	.	.	.
ATP13A3	79572	broad.mit.edu	36	3	195649040	195649040	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024524	exon13	c.T1402C	p.Y468H	.	.	.
UBXN7	26043	broad.mit.edu	36	3	197573691	197573691	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015562	exon9	c.A1099G	p.T367A	.	.	.
RNF168	165918	broad.mit.edu	36	3	197699917	197699917	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152617	exon2	c.A336C	p.K112N	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21453637	21453637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024697	exon5	c.G502A	p.V168I	.	.	.
UBE2E1	7324	broad.mit.edu	36	3	23827966	23827966	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003341	exon3	c.A164G	p.E55G	.	.	.
RPL15	6138	broad.mit.edu	36	3	23935029	23935029	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002948	exon3	c.T267A	p.V89V	.	.	.
CMC1	152100	broad.mit.edu	36	3	28279856	28279856	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182523	exon2	c.G90A	p.R30R	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3005071	3005071	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175613	exon5	c.T417C	p.V139V	.	.	.
CHL1	10752	broad.mit.edu	36	3	344959	344959	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon5	c.T307C	p.F103L	.	.	.
MLH1	4292	broad.mit.edu	36	3	37010068	37010068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000249	exon1	c.G26A	p.R9Q	.	.	.
MLH1	4292	broad.mit.edu	36	3	37064050	37064050	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000249	exon16	c.T1768A	p.L590I	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37075371	37075371	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017724	exon11	c.G821A	p.R274Q	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38124198	38124198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007337	exon20	c.G2984A	p.G995D	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38567830	38567830	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon27	c.C4983T	p.F1661F	.	.	.
LRRN1	57633	broad.mit.edu	36	3	3862626	3862626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020873	exon2	c.G1301A	p.R434H	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42239538	42239538	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042646	exon16	c.T2167G	p.S723A	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44471677	44471677	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181489	exon3	c.C369T	p.G123G	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587669	44587669	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018651	exon6	c.A2063G	p.E688G	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44737462	44737462	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033210	exon4	c.A149G	p.Y50C	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45984415	45984415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024513	exon8	c.G1415A	p.R472Q	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4681902	4681902	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon17	c.G1635A	p.R545R	.	.	.
PTH1R	5745	broad.mit.edu	36	3	46915813	46915813	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184744	exon9	c.C851T	p.A284V	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4693460	4693460	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon24	c.A2915G	p.K972R	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47016443	47016443	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015175	exon27	c.T3850C	p.W1284R	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47016763	47016763	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015175	exon27	c.G4170A	p.S1390S	.	.	.
KLHL18	23276	broad.mit.edu	36	3	47360127	47360127	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025010	exon10	c.G1417A	p.A473T	.	.	.
DHX30	22907	broad.mit.edu	36	3	47862961	47862961	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138615	exon11	c.G1395A	p.T465T	.	.	.
TREX1	11277	broad.mit.edu	36	3	48481362	48481362	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130384	exon12	c.C2184T	p.H728H	.	.	.
QRICH1	54870	broad.mit.edu	36	3	49044632	49044632	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198880	exon9	c.A2126G	p.Y709C	.	.	.
BSN	8927	broad.mit.edu	36	3	49667977	49667977	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003458	exon5	c.A5984G	p.N1995S	.	.	.
GNAT1	2779	broad.mit.edu	36	3	50205776	50205776	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000172	exon3	c.A224G	p.Q75R	.	.	.
RAD54L2	23132	broad.mit.edu	36	3	51655424	51655424	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015106	exon18	c.C2913A	p.S971R	.	.	.
ACY1	95	broad.mit.edu	36	3	51995336	51995336	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198897	exon6	c.A385G	p.K129E	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52377904	52377904	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon37	c.A5873G	p.N1958S	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52585646	52585646	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018313	exon23	c.A3567G	p.E1189E	.	.	.
WNT5A	7474	broad.mit.edu	36	3	55479376	55479376	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003392	exon5	c.C927T	p.C309C	.	.	.
APPL1	26060	broad.mit.edu	36	3	57257265	57257265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012096	exon10	c.C709T	p.R237C	.	.	.
ACOX2	8309	broad.mit.edu	36	3	58495730	58495730	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003500	exon2	c.A144G	p.A48A	.	.	.
FEZF2	55079	broad.mit.edu	36	3	62330921	62330921	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018008	exon5	c.C1257T	p.C419C	.	.	.
FEZF2	55079	broad.mit.edu	36	3	62332011	62332011	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018008	exon4	c.G1041A	p.T347T	.	.	.
CADPS	8618	broad.mit.edu	36	3	62611679	62611679	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183393	exon5	c.C1086T	p.G362G	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63873917	63873917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177387	exon3	c.G370A	p.E124K	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78759328	78759328	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon26	c.A3708G	p.E1236E	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78789097	78789097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon18	c.G2455A	p.G819S	.	.	.
HTR1F	3355	broad.mit.edu	36	3	88122650	88122650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000866	exon2	c.C61T	p.P21S	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89472814	89472814	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon4	c.G873A	p.P291P	.	.	.
SRGAP3	9901	broad.mit.edu	36	3	9141547	9141547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014850	exon2	c.C122T	p.S41L	.	.	.
TTLL3	26140	broad.mit.edu	36	3	9845670	9845670	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025930	exon10	c.T1574C	p.I525T	.	.	.
IL17RC	84818	broad.mit.edu	36	3	9944880	9944880	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032732	exon9	c.A808G	p.T270A	.	.	.
ST3GAL6	10402	broad.mit.edu	36	3	99989933	99989933	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006100	exon9	c.C692A	p.P231H	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1346501	1346501	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014461	exon11	c.1246delA	p.K416fs	.	.	.
USP19	10869	broad.mit.edu	36	3	49129734	49129736	+	In_Frame_Del	DEL	AGT	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	AGT	AGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199162	exon6	c.639_641del	p.213_214del	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49142311	49142313	+	In_Frame_Del	DEL	AAG	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002292	exon10	c.1368_1370del	p.456_457del	.	.	.
TRAIP	10293	broad.mit.edu	36	3	49842126	49842126	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005879	exon13	c.1164delT	p.F388fs	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51392644	51392644	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon52	c.5508delC	p.Y1836fs	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57594063	57594063	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152678	exon15	c.1322delT	p.L441fs	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77625192	77625192	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon4	c.716delA	p.E239fs	.	.	.
METAP1	23173	broad.mit.edu	36	4	100188967	100188967	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015143	exon9	c.A848T	p.N283I	.	.	.
ADH6	130	broad.mit.edu	36	4	100349024	100349024	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000672	exon6	c.G652C	p.A218P	.	.	.
RG9MTD2	93587	broad.mit.edu	36	4	100689449	100689449	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134665	exon8	c.C839T	p.P280L	.	.	.
RG9MTD2	93587	broad.mit.edu	36	4	100699429	100699429	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134665	exon2	c.G90A	p.K30K	.	.	.
NHEDC1	150159	broad.mit.edu	36	4	104087266	104087266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139173	exon5	c.G512T	p.G171V	.	.	.
TET2	54790	broad.mit.edu	36	4	106376178	106376178	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017628	exon3	c.C1630T	p.R544X	.	.	.
DKK2	27123	broad.mit.edu	36	4	108064750	108064750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014421	exon4	c.G590A	p.R197H	.	.	.
RRH	10692	broad.mit.edu	36	4	110983167	110983167	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006583	exon6	c.C814A	p.P272T	.	.	.
ANK2	287	broad.mit.edu	36	4	114482417	114482417	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020977	exon33	c.A4018G	p.I1340V	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119456841	119456841	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003619	exon6	c.T1236C	p.C412C	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120167622	120167622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon3	c.C650T	p.A217V	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120171148	120171148	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon4	c.A1770C	p.K590N	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120172044	120172044	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon4	c.A2666G	p.D889G	.	.	.
MYOZ2	51778	broad.mit.edu	36	4	120291579	120291579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016599	exon3	c.C181T	p.R61C	.	.	.
BBS7	55212	broad.mit.edu	36	4	122973992	122973992	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176824	exon15	c.A1520G	p.N507S	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125811943	125811943	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.G1402T	p.A468S	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459932	126459932	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.T2916C	p.G972G	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128914080	128914080	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031291	exon6	c.C849T	p.G283G	.	.	.
HSPA4L	22824	broad.mit.edu	36	4	128963464	128963464	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014278	exon15	c.C1903T	p.L635L	.	.	.
HSPA4L	22824	broad.mit.edu	36	4	128973306	128973306	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014278	exon19	c.A2347T	p.N783Y	.	.	.
MAEA	10296	broad.mit.edu	36	4	1299303	1299303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017405	exon3	c.G371A	p.R124H	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13201127	13201127	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148894	exon14	c.C8190T	p.S2730S	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13215417	13215417	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148894	exon10	c.G2205A	p.S735S	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134291727	134291727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon1	c.G982A	p.V328M	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138670336	138670336	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.A2357T	p.E786V	.	.	.
CCRN4L	25819	broad.mit.edu	36	4	140185394	140185394	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012118	exon3	c.G612A	p.Q204Q	.	.	.
GAB1	2549	broad.mit.edu	36	4	144609772	144609772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207123	exon11	c.C2155T	p.P719S	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146287013	146287013	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102653	exon14	c.A1083T	p.R361S	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147780872	147780872	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004575	exon2	c.C692A	p.A231E	.	.	.
FBXL5	26234	broad.mit.edu	36	4	15236666	15236666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012161	exon9	c.G1157A	p.R386Q	.	.	.
FGA	2243	broad.mit.edu	36	4	155728114	155728114	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021871	exon4	c.G510T	p.E170D	.	.	.
RBM46	166863	broad.mit.edu	36	4	155939508	155939508	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144979	exon4	c.A744G	p.T248T	.	.	.
GLRB	2743	broad.mit.edu	36	4	158261217	158261217	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166060	exon3	c.A182T	p.N61I	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158481880	158481880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083620	exon12	c.G1718A	p.R573H	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159311243	159311243	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128424	exon2	c.T735G	p.R245R	.	.	.
FNIP2	57600	broad.mit.edu	36	4	160009823	160009823	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020840	exon13	c.C2585A	p.P862H	.	.	.
FAM53A	152877	broad.mit.edu	36	4	1613045	1613045	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174070	exon5	c.C988A	p.L330I	.	.	.
SPOCK3	50859	broad.mit.edu	36	4	167949904	167949904	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016950	exon8	c.A710C	p.E237A	.	.	.
TACC3	10460	broad.mit.edu	36	4	1694959	1694959	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006342	exon2	c.G13T	p.V5F	.	.	.
MFAP3L	9848	broad.mit.edu	36	4	171149532	171149532	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021647	exon3	c.C802T	p.Q268X	.	.	.
GALNTL6	442117	broad.mit.edu	36	4	172972364	172972364	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034845	exon2	c.A58G	p.I20V	.	.	.
STOX2	56977	broad.mit.edu	36	4	185167668	185167668	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020225	exon3	c.C683T	p.P228L	.	.	.
HELT	391723	broad.mit.edu	36	4	186178540	186178540	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029887	exon4	c.C604T	p.R202C	.	.	.
F11	2160	broad.mit.edu	36	4	187438508	187438508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000128	exon9	c.G1003A	p.A335T	.	.	.
FAT1	2195	broad.mit.edu	36	4	187776143	187776143	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.T8591C	p.M2864T	.	.	.
GBA3	57733	broad.mit.edu	36	4	22358291	22358291	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020973	exon3	c.G561A	p.G187G	.	.	.
PPARGC1A	10891	broad.mit.edu	36	4	23425081	23425081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013261	exon8	c.C1123T	p.R375W	.	.	.
SLC34A2	10568	broad.mit.edu	36	4	25287315	25287315	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177999	exon13	c.G1916A	p.R639H	.	.	.
RFC1	5981	broad.mit.edu	36	4	38986759	38986759	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon13	c.A1777G	p.T593A	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39606059	39606059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100399	exon3	c.C259T	p.R87C	.	.	.
DCAF4L1	285429	broad.mit.edu	36	4	41679132	41679132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029955	exon1	c.C566T	p.A189V	.	.	.
GABRA2	2555	broad.mit.edu	36	4	45947203	45947203	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000807	exon10	c.A1235G	p.N412S	.	.	.
GABRB1	2560	broad.mit.edu	36	4	47122649	47122649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000812	exon9	c.C1282T	p.R428C	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47232724	47232724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon7	c.G932A	p.R311H	.	.	.
CORIN	10699	broad.mit.edu	36	4	47483683	47483683	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon3	c.C225T	p.V75V	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47633685	47633685	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000087	exon11	c.C1583A	p.A528E	.	.	.
CNGA1	1259	broad.mit.edu	36	4	47649382	47649382	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000087	exon4	c.C94T	p.R32X	.	.	.
TMEM165	55858	broad.mit.edu	36	4	55972751	55972751	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018475	exon2	c.A421G	p.T141A	.	.	.
AASDH	132949	broad.mit.edu	36	4	56914508	56914508	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181806	exon9	c.G1395A	p.E465E	.	.	.
EVC	2121	broad.mit.edu	36	4	5863021	5863021	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon20	c.T2837C	p.L946P	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62441260	62441260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon7	c.C1568T	p.A523V	.	.	.
CENPC1	1060	broad.mit.edu	36	4	68060848	68060848	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001812	exon9	c.A1479T	p.E493D	.	.	.
GNRHR	2798	broad.mit.edu	36	4	68302183	68302183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000406	exon1	c.G466A	p.G156R	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69830281	69830281	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024743	exon6	c.C1423T	p.R475X	.	.	.
MUC7	4589	broad.mit.edu	36	4	71381747	71381747	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152291	exon3	c.G697T	p.E233X	.	.	.
ENAM	10117	broad.mit.edu	36	4	71729347	71729347	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031889	exon9	c.G3340T	p.D1114Y	.	.	.
DCK	1633	broad.mit.edu	36	4	72111247	72111247	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000788	exon6	c.A667G	p.T223A	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73395680	73395680	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon14	c.G2004A	p.T668T	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74233421	74233421	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198889	exon8	c.G1540T	p.E514X	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79527710	79527710	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon29	c.T3806G	p.L1269R	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79540968	79540968	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon30	c.G4032A	p.G1344G	.	.	.
COQ2	27235	broad.mit.edu	36	4	84419211	84419211	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015697	exon2	c.C484T	p.L162F	.	.	.
MRPS18C	51023	broad.mit.edu	36	4	84601300	84601300	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016067	exon6	c.T355G	p.F119V	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85861586	85861586	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon47	c.G7605T	p.K2535N	.	.	.
HERC5	51191	broad.mit.edu	36	4	89609353	89609353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016323	exon9	c.G1157T	p.R386M	.	.	.
HERC3	8916	broad.mit.edu	36	4	89794283	89794283	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014606	exon7	c.A753C	p.E251D	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96310483	96310483	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003728	exon15	c.G2475A	p.P825P	.	.	.
C4orf37	285555	broad.mit.edu	36	4	98699255	98699255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174952	exon11	c.G1357A	p.E453K	.	.	.
TSPAN5	10098	broad.mit.edu	36	4	99626952	99626952	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005723	exon3	c.G239A	p.C80Y	.	.	.
TET2	54790	broad.mit.edu	36	4	106375149	106375149	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017628	exon3	c.601delA	p.K201fs	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185875285	185875285	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024629	exon5	c.380delA	p.K127fs	.	.	.
LIAS	11019	broad.mit.edu	36	4	39138859	39138859	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194451	exon2	c.100delA	p.K34fs	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45755115	45755115	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173536	exon7	c.792delT	p.F264fs	.	.	.
CDH18	1016	broad.mit.edu	36	5	19519301	19519302	+	In_Frame_Ins	INS	-	TGC	TGC	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004934	exon12	c.1748_1749insGCA	p.T583delinsST	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101655009	101655009	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_180991	exon2	c.G556A	p.A186T	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11076072	11076072	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon17	c.C2808A	p.D936E	.	.	.
C5orf13	9315	broad.mit.edu	36	5	111094632	111094632	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142475	exon4	c.C224T	p.P75L	.	.	.
APC	324	broad.mit.edu	36	5	112202510	112202510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3266T	p.A1089V	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112906073	112906073	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon10	c.A1469C	p.H490P	.	.	.
SEMA6A	57556	broad.mit.edu	36	5	115855372	115855372	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020796	exon7	c.A498C	p.P166P	.	.	.
FTMT	94033	broad.mit.edu	36	5	121216254	121216254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177478	exon1	c.C697T	p.H233Y	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137309535	137309535	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016603	exon19	c.G2229A	p.R743R	.	.	.
BRD8	10902	broad.mit.edu	36	5	137534461	137534461	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006696	exon6	c.C399G	p.H133Q	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139818474	139818474	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017747	exon8	c.A1323G	p.P441P	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139885859	139885859	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017747	exon26	c.G4587A	p.G1529G	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140148203	140148203	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031410	exon1	c.T2144C	p.L715P	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140326974	140326974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018899	exon1	c.C439T	p.R147C	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140411947	140411947	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013340	exon1	c.C708T	p.N236N	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456693	140456693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018936	exon1	c.C2135T	p.A712V	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483559	140483559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018938	exon1	c.G1795A	p.A599T	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140544356	140544356	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020957	exon1	c.C2038T	p.Q680X	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140554673	140554673	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.T2364A	p.N788K	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570542	140570542	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018932	exon1	c.G1879T	p.A627S	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699714	140699714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.C992T	p.A331V	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140731175	140731175	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018924	exon1	c.G1030A	p.A344T	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140754342	140754342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032088	exon1	c.C1778T	p.A593V	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769860	140769860	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018926	exon1	c.A1907G	p.D636G	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141031717	141031717	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022481	exon11	c.C1600A	p.L534M	.	.	.
PCDH1	5097	broad.mit.edu	36	5	141225055	141225055	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032420	exon3	c.A1025G	p.Q342R	.	.	.
RBM27	54439	broad.mit.edu	36	5	145590457	145590457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018989	exon6	c.G634A	p.E212K	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145868959	145868959	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040006	exon20	c.A2990T	p.D997V	.	.	.
DPYSL3	1809	broad.mit.edu	36	5	146765451	146765451	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001387	exon8	c.T726C	p.I242I	.	.	.
FAM105B	90268	broad.mit.edu	36	5	14734686	14734686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138348	exon4	c.G438A	p.P146P	.	.	.
ABLIM3	22885	broad.mit.edu	36	5	148560166	148560166	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014945	exon5	c.A430G	p.K144E	.	.	.
FAT2	2196	broad.mit.edu	36	5	150926054	150926054	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon1	c.A2632G	p.T878A	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151755286	151755286	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020167	exon3	c.A864G	p.R288R	.	.	.
GALNT10	55568	broad.mit.edu	36	5	153689339	153689339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198321	exon4	c.G416A	p.R139H	.	.	.
GEMIN5	25929	broad.mit.edu	36	5	154295767	154295767	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015465	exon3	c.A336G	p.I112M	.	.	.
C5orf40	408263	broad.mit.edu	36	5	156702781	156702781	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001343	exon2	c.G342A	p.W114X	.	.	.
ATP10B	23120	broad.mit.edu	36	5	160045770	160045770	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025153	exon6	c.T364G	p.L122V	.	.	.
GABRA6	2559	broad.mit.edu	36	5	161045824	161045824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000811	exon2	c.G49A	p.A17T	.	.	.
ZNF622	90441	broad.mit.edu	36	5	16518299	16518299	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033414	exon1	c.T476C	p.V159A	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169368179	169368179	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon31	c.A3173C	p.K1058T	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171699392	171699392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017995	exon13	c.C1322T	p.P441L	.	.	.
ZNF346	23567	broad.mit.edu	36	5	176401407	176401407	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012279	exon3	c.T302C	p.V101A	.	.	.
FGFR4	2264	broad.mit.edu	36	5	176451327	176451327	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213647	exon6	c.C639T	p.S213S	.	.	.
F12	2161	broad.mit.edu	36	5	176765623	176765623	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000505	exon3	c.A161G	p.H54R	.	.	.
DDX41	51428	broad.mit.edu	36	5	176875733	176875733	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016222	exon4	c.G366T	p.E122D	.	.	.
FAM153A	285596	broad.mit.edu	36	5	177096189	177096189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173663	exon11	c.G430A	p.E144K	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178489638	178489638	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014244	exon16	c.A2358G	p.K786K	.	.	.
CANX	821	broad.mit.edu	36	5	179069583	179069583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024649	exon7	c.C632T	p.T211M	.	.	.
TRIM7	81786	broad.mit.edu	36	5	180558334	180558334	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203295	exon5	c.A326C	p.K109T	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23553751	23553751	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon5	c.A306G	p.K102K	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562244	23562244	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.C1290A	p.P430P	.	.	.
IRX2	153572	broad.mit.edu	36	5	2802864	2802864	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134222	exon2	c.G287A	p.G96D	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31562769	31562769	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon4	c.A28G	p.M10V	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32124529	32124529	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon19	c.G5218C	p.D1740H	.	.	.
TTC23L	153657	broad.mit.edu	36	5	34904828	34904828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144725	exon8	c.C902T	p.A301V	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35034621	35034621	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031900	exon14	c.G1505A	p.R502H	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35083716	35083716	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031900	exon1	c.C39T	p.C13C	.	.	.
IRX1	79192	broad.mit.edu	36	5	3652714	3652714	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024337	exon2	c.G652A	p.E218K	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37021020	37021020	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon10	c.T1981C	p.C661R	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37204766	37204766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon34	c.C7117T	p.P2373S	.	.	.
LIFR	3977	broad.mit.edu	36	5	38520720	38520720	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127671	exon18	c.A2505G	p.G835G	.	.	.
FYB	2533	broad.mit.edu	36	5	39161988	39161988	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001465	exon12	c.A1914G	p.T638T	.	.	.
FYB	2533	broad.mit.edu	36	5	39238314	39238314	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199335	exon2	c.C506T	p.A169V	.	.	.
PLCXD3	345557	broad.mit.edu	36	5	41349618	41349618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005473	exon3	c.C824T	p.A275V	.	.	.
FBXO4	26272	broad.mit.edu	36	5	41965683	41965683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012176	exon3	c.G553A	p.G185S	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43316468	43316468	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153361	exon4	c.G1191A	p.K397K	.	.	.
PARP8	79668	broad.mit.edu	36	5	50126857	50126857	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178055	exon13	c.A1277G	p.H426R	.	.	.
ISL1	3670	broad.mit.edu	36	5	50719278	50719278	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002202	exon3	c.C416A	p.A139D	.	.	.
ISL1	3670	broad.mit.edu	36	5	50721455	50721455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002202	exon4	c.C697T	p.R233W	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5517045	5517045	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015325	exon13	c.A4598G	p.Q1533R	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56206882	56206882	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon10	c.C1953T	p.Y651Y	.	.	.
MIER3	166968	broad.mit.edu	36	5	56255499	56255499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152622	exon11	c.C1049T	p.T350M	.	.	.
IPO11	51194	broad.mit.edu	36	5	61768957	61768957	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134779	exon2	c.T214G	p.L72V	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292264	63292264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000524	exon1	c.C1039T	p.L347L	.	.	.
MAST4	375449	broad.mit.edu	36	5	66432164	66432164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015183	exon7	c.C491T	p.S164F	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72413432	72413432	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146032	exon22	c.A1948G	p.T650A	.	.	.
GCNT4	51301	broad.mit.edu	36	5	74360802	74360802	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016591	exon1	c.C817T	p.R273W	.	.	.
POC5	134359	broad.mit.edu	36	5	75024049	75024049	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099271	exon7	c.G723T	p.K241N	.	.	.
F2R	2149	broad.mit.edu	36	5	76064812	76064812	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001992	exon2	c.C1006G	p.H336D	.	.	.
ADCY2	108	broad.mit.edu	36	5	7762414	7762414	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon10	c.T1492G	p.L498V	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78364346	78364346	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013391	exon9	c.G1437A	p.E479E	.	.	.
MTX3	345778	broad.mit.edu	36	5	79320771	79320771	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010891	exon4	c.C281A	p.A94D	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82984172	82984172	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001884	exon3	c.G328T	p.G110C	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9189619	9189619	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003966	exon13	c.T1596C	p.C532C	.	.	.
TTC37	9652	broad.mit.edu	36	5	94829351	94829351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014639	exon42	c.C4595T	p.A1532V	.	.	.
RGMB	285704	broad.mit.edu	36	5	98156824	98156824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012761	exon5	c.G904T	p.V302L	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114638815	114638815	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040440	exon6	c.915delA	p.K305fs	.	.	.
WWC1	23286	broad.mit.edu	36	5	167768127	167768127	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161661	exon7	c.758delG	p.R253fs	.	.	.
IL6ST	3572	broad.mit.edu	36	5	55283626	55283626	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190981	exon12	c.1404delA	p.K468fs	.	.	.
ANKRD55	79722	broad.mit.edu	36	5	55443323	55443323	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024669	exon10	c.1009delC	p.Q337fs	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77347046	77347048	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003664	exon26	c.3073_3075del	p.1025_1025del	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96386023	96386023	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005575	exon15	c.2604delA	p.A868fs	.	.	.
RIOK2	55781	broad.mit.edu	36	5	96532758	96532758	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018343	exon6	c.687delT	p.F229fs	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101160277	101160277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon33	c.C5065T	p.R1689C	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102444314	102444314	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021956	exon11	c.A1631C	p.K544T	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11069760	11069760	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040274	exon28	c.T2397A	p.C799X	.	.	.
CDK19	23097	broad.mit.edu	36	6	111066549	111066549	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015076	exon5	c.A510C	p.K170N	.	.	.
REV3L	5980	broad.mit.edu	36	6	111757439	111757439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon25	c.C8230T	p.P2744S	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112542001	112542001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105207	exon38	c.G5276A	p.R1759K	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112586771	112586771	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105207	exon14	c.C1652T	p.A551V	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11293494	11293494	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006403	exon7	c.G2392A	p.A798T	.	.	.
TSPYL1	7259	broad.mit.edu	36	6	116706965	116706965	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003309	exon1	c.C722T	p.T241I	.	.	.
RFX6	222546	broad.mit.edu	36	6	117352594	117352594	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon15	c.A1625G	p.N542S	.	.	.
RFX6	222546	broad.mit.edu	36	6	117355182	117355182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon17	c.G2185A	p.A729T	.	.	.
MAN1A1	4121	broad.mit.edu	36	6	119542732	119542732	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005907	exon13	c.T1913C	p.L638P	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121453792	121453792	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152730	exon31	c.A3560T	p.D1187V	.	.	.
ECHDC1	55862	broad.mit.edu	36	6	127652861	127652861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002030	exon6	c.C752T	p.P251L	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128348599	128348599	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002844	exon22	c.T3211A	p.S1071T	.	.	.
TMEM200A	114801	broad.mit.edu	36	6	130804605	130804605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052913	exon2	c.G1345A	p.A449T	.	.	.
MED23	9439	broad.mit.edu	36	6	131965114	131965114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015979	exon18	c.G2050A	p.A684T	.	.	.
GFOD1	54438	broad.mit.edu	36	6	13473313	13473313	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018988	exon2	c.G814C	p.A272P	.	.	.
HBS1L	10767	broad.mit.edu	36	6	135402595	135402595	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145207	exon4	c.G239A	p.R80H	.	.	.
SIRT5	23408	broad.mit.edu	36	6	13699988	13699988	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193267	exon5	c.G358A	p.A120T	.	.	.
OLIG3	167826	broad.mit.edu	36	6	137856912	137856912	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175747	exon1	c.A89G	p.H30R	.	.	.
TXLNB	167838	broad.mit.edu	36	6	139606078	139606078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153235	exon10	c.C1333T	p.R445C	.	.	.
GPR126	57211	broad.mit.edu	36	6	142765555	142765555	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032394	exon12	c.T1766C	p.V589A	.	.	.
STX11	8676	broad.mit.edu	36	6	144549920	144549920	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003764	exon2	c.G463A	p.D155N	.	.	.
UTRN	7402	broad.mit.edu	36	6	144824036	144824036	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon21	c.C2718T	p.G906G	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146249603	146249603	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042683	exon30	c.T4969A	p.S1657T	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146285525	146285525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon19	c.G3698A	p.C1233Y	.	.	.
ZC3H12D	340152	broad.mit.edu	36	6	149815523	149815523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207360	exon5	c.C709T	p.R237C	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151907450	151907450	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon4	c.G494A	p.C165Y	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151911136	151911136	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon5	c.G593A	p.R198K	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152514951	152514951	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon49	c.C7720A	p.H2574N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152599748	152599748	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon24	c.A3668G	p.Q1223R	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152632097	152632097	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon14	c.G2163A	p.K721K	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152868142	152868142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon9	c.C686T	p.P229L	.	.	.
FOXC1	2296	broad.mit.edu	36	6	1556194	1556194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001453	exon1	c.G515A	p.R172Q	.	.	.
JARID2	3720	broad.mit.edu	36	6	15609191	15609191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004973	exon8	c.C2020T	p.L674F	.	.	.
JARID2	3720	broad.mit.edu	36	6	15620458	15620458	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004973	exon14	c.A2993G	p.H998R	.	.	.
SERAC1	84947	broad.mit.edu	36	6	158484170	158484170	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032861	exon8	c.T644C	p.L215P	.	.	.
TULP4	56995	broad.mit.edu	36	6	158839728	158839728	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007466	exon12	c.A1910G	p.Q637R	.	.	.
SYTL3	94120	broad.mit.edu	36	6	159105578	159105578	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009991	exon17	c.T1583C	p.L528P	.	.	.
ACAT2	39	broad.mit.edu	36	6	160119264	160119264	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005891	exon8	c.G985T	p.A329S	.	.	.
LPA	4018	broad.mit.edu	36	6	160927474	160927474	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005577	exon26	c.G4126T	p.E1376X	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161389711	161389711	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon3	c.C417A	p.S139R	.	.	.
MYLIP	29116	broad.mit.edu	36	6	16253512	16253512	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013262	exon6	c.C1233T	p.C411C	.	.	.
SFT2D1	113402	broad.mit.edu	36	6	166661772	166661772	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145169	exon4	c.T297C	p.L99L	.	.	.
RNASET2	8635	broad.mit.edu	36	6	167264571	167264571	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003730	exon8	c.C518T	p.A173V	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24672442	24672442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168377	exon15	c.G2398A	p.D800N	.	.	.
SCGN	10590	broad.mit.edu	36	6	25773198	25773198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006998	exon4	c.C295T	p.R99C	.	.	.
HIST1H4B	8366	broad.mit.edu	36	6	26135175	26135175	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003544	exon1	c.A285G	p.G95G	.	.	.
HIST1H4B	8366	broad.mit.edu	36	6	26135268	26135268	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003544	exon1	c.G192A	p.E64E	.	.	.
HIST1H2BF	8343	broad.mit.edu	36	6	26307869	26307869	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003522	exon1	c.A104G	p.K35R	.	.	.
HIST1H4E	8367	broad.mit.edu	36	6	26312999	26312999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003545	exon1	c.C148T	p.L50F	.	.	.
HIST1H1D	3007	broad.mit.edu	36	6	26342937	26342937	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005320	exon1	c.G204A	p.A68A	.	.	.
HIST1H1D	3007	broad.mit.edu	36	6	26343019	26343019	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005320	exon1	c.T122C	p.V41A	.	.	.
HIST1H4F	8361	broad.mit.edu	36	6	26348802	26348802	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003540	exon1	c.G170A	p.G57D	.	.	.
HIST1H2AJ	8331	broad.mit.edu	36	6	27890166	27890166	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021066	exon1	c.A332G	p.N111S	.	.	.
HIST1H4L	8368	broad.mit.edu	36	6	27949018	27949018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003546	exon1	c.G250A	p.A84T	.	.	.
DUSP22	56940	broad.mit.edu	36	6	280124	280124	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020185	exon4	c.A149G	p.Y50C	.	.	.
PGBD1	84547	broad.mit.edu	36	6	28377465	28377465	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184743	exon7	c.C1855T	p.Q619X	.	.	.
OR10C1	442194	broad.mit.edu	36	6	29516037	29516037	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013941	exon1	c.G266A	p.R89H	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29689101	29689101	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021904	exon11	c.C1278T	p.G426G	.	.	.
DHX16	8449	broad.mit.edu	36	6	30732182	30732182	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003587	exon15	c.C2395A	p.L799M	.	.	.
KIAA1949	170954	broad.mit.edu	36	6	30761475	30761475	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134870	exon2	c.G300A	p.Q100Q	.	.	.
TUBB	203068	broad.mit.edu	36	6	30799334	30799334	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178014	exon4	c.A516G	p.S172S	.	.	.
BAT2	7916	broad.mit.edu	36	6	31705013	31705013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004638	exon13	c.C1879T	p.R627C	.	.	.
C6orf27	80737	broad.mit.edu	36	6	31848825	31848825	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025258	exon7	c.C972T	p.G324G	.	.	.
HSPA1L	3305	broad.mit.edu	36	6	31885867	31885867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005527	exon2	c.C1862T	p.A621V	.	.	.
RXRB	6257	broad.mit.edu	36	6	33270803	33270803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021976	exon9	c.G1351A	p.A451T	.	.	.
SPDEF	25803	broad.mit.edu	36	6	34619861	34619861	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012391	exon2	c.A350G	p.H117R	.	.	.
TCP11	6954	broad.mit.edu	36	6	35194226	35194226	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093728	exon10	c.G1349A	p.C450Y	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35316240	35316240	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152753	exon9	c.G1064A	p.C355Y	.	.	.
MTCH1	23787	broad.mit.edu	36	6	37044716	37044716	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014341	exon12	c.C1060T	p.R354X	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37730651	37730651	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153487	exon5	c.G615A	p.R205R	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40507613	40507613	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020737	exon2	c.C1218T	p.S406S	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40507957	40507957	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020737	exon2	c.A874T	p.T292S	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40508255	40508255	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020737	exon2	c.C576G	p.T192T	.	.	.
UNC5CL	222643	broad.mit.edu	36	6	41109836	41109836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173561	exon3	c.G448A	p.A150T	.	.	.
TREML2	79865	broad.mit.edu	36	6	41273881	41273881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024807	exon2	c.G320A	p.R107H	.	.	.
FOXP4	116113	broad.mit.edu	36	6	41665551	41665551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012426	exon10	c.C1130A	p.P377H	.	.	.
PRPH2	5961	broad.mit.edu	36	6	42780303	42780303	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000322	exon2	c.G606A	p.G202G	.	.	.
TBCC	6903	broad.mit.edu	36	6	42821530	42821530	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003192	exon1	c.C260A	p.A87E	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43416131	43416131	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014345	exon10	c.C3583T	p.R1195X	.	.	.
SLC35B2	347734	broad.mit.edu	36	6	44330599	44330599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178148	exon4	c.G1121A	p.R374H	.	.	.
CYP39A1	51302	broad.mit.edu	36	6	46626110	46626110	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016593	exon12	c.C1362T	p.V454V	.	.	.
GPR116	221395	broad.mit.edu	36	6	46942771	46942771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098518	exon13	c.G1684A	p.V562I	.	.	.
GPR116	221395	broad.mit.edu	36	6	46955580	46955580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098518	exon9	c.G970A	p.A324T	.	.	.
GPR115	221393	broad.mit.edu	36	6	47790264	47790264	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153838	exon6	c.T1324C	p.C442R	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50913724	50913724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003221	exon5	c.G899A	p.R300H	.	.	.
MCM3	4172	broad.mit.edu	36	6	52237353	52237353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002388	exon17	c.C2419A	p.L807I	.	.	.
GSTA1	2938	broad.mit.edu	36	6	52764691	52764691	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145740	exon7	c.T593C	p.L198P	.	.	.
BAG2	9532	broad.mit.edu	36	6	57156942	57156942	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004282	exon3	c.A631C	p.N211H	.	.	.
KHDRBS2	202559	broad.mit.edu	36	6	62815805	62815805	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152688	exon3	c.A273G	p.L91L	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72735453	72735453	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon2	c.A211G	p.R71G	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73100259	73100259	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168407	exon20	c.G2326T	p.E776X	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73157137	73157137	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168409	exon18	c.A1687G	p.N563D	.	.	.
KCNQ5	56479	broad.mit.edu	36	6	73843879	73843879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160133	exon4	c.C730T	p.R244C	 KCNQ5,large_intestine,colon,Substitution - Missense,0 	.	.
DSP	1832	broad.mit.edu	36	6	7531018	7531018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008844	exon24	c.C6727T	p.R2243C	.	.	.
MYO6	4646	broad.mit.edu	36	6	76659102	76659102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004999	exon28	c.G3082A	p.A1028T	.	.	.
PHIP	55023	broad.mit.edu	36	6	79732410	79732410	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017934	exon28	c.T3288C	p.P1096P	.	.	.
IBTK	25998	broad.mit.edu	36	6	82984524	82984524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015525	exon10	c.C1298T	p.A433V	.	.	.
TBX18	9096	broad.mit.edu	36	6	85514493	85514493	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080508	exon5	c.C803T	p.P268L	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88023963	88023963	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.A3897G	p.S1299S	.	.	.
RARS2	57038	broad.mit.edu	36	6	88297320	88297320	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020320	exon9	c.G672T	p.Q224H	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89380811	89380811	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003800	exon15	c.A1529T	p.Y510F	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90397260	90397260	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014942	exon16	c.T1985G	p.L662R	.	.	.
MDN1	23195	broad.mit.edu	36	6	90438654	90438654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon82	c.G13780A	p.A4594T	.	.	.
MDN1	23195	broad.mit.edu	36	6	90478621	90478621	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon49	c.A7506T	p.A2502A	.	.	.
MDN1	23195	broad.mit.edu	36	6	90504805	90504805	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon33	c.C4684A	p.L1562I	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94185692	94185692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004440	exon1	c.C89T	p.A30V	.	.	.
FUT9	10690	broad.mit.edu	36	6	96758202	96758202	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006581	exon3	c.C450A	p.H150Q	.	.	.
KIAA0776	23376	broad.mit.edu	36	6	97083134	97083134	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015323	exon6	c.A501G	p.G167G	.	.	.
KIAA0776	23376	broad.mit.edu	36	6	97093316	97093316	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015323	exon10	c.T1067C	p.V356A	.	.	.
SLC16A10	117247	broad.mit.edu	36	6	111634519	111634519	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018593	exon4	c.974delA	p.E325fs	.	.	.
NOL7	51406	broad.mit.edu	36	6	13728971	13728971	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016167	exon8	c.707delA	p.Q236fs	.	.	.
PLG	5340	broad.mit.edu	36	6	161054026	161054026	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000301	exon5	c.426delC	p.H142fs	.	.	.
QKI	9444	broad.mit.edu	36	6	163819910	163819910	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206855	exon3	c.394delA	p.K132fs	.	.	.
SLC39A7	7922	broad.mit.edu	36	6	33277015	33277015	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006979	exon1	c.15delG	p.L5fs	.	.	.
TAF11	6882	broad.mit.edu	36	6	34954359	34954359	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005643	exon5	c.622delA	p.I208fs	.	.	.
SMAP1	60682	broad.mit.edu	36	6	71603395	71603395	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001044305	exon7	c.607delA	p.K203fs	.	.	.
HDAC2	3066	broad.mit.edu	36	6	114384552	114384552	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PRRT1	80863	broad.mit.edu	36	6	32224974	32224974	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EPHB4	2050	broad.mit.edu	36	7	100248434	100248434	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004444	exon12	c.C1989T	p.S663S	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100301282	100301282	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020246	exon14	c.A1864G	p.M622V	.	.	.
MUC17	140453	broad.mit.edu	36	7	100468817	100468817	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.C7400T	p.P2467L	.	.	.
MUC17	140453	broad.mit.edu	36	7	100469877	100469877	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.G8460A	p.T2820T	.	.	.
TRIM56	81844	broad.mit.edu	36	7	100519409	100519409	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030961	exon3	c.T2096C	p.V699A	.	.	.
PLOD3	8985	broad.mit.edu	36	7	100646287	100646287	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001084	exon4	c.A379C	p.K127Q	.	.	.
MYL10	93408	broad.mit.edu	36	7	101054228	101054228	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138403	exon2	c.G115A	p.A39T	.	.	.
ARMC10	83787	broad.mit.edu	36	7	102526143	102526143	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161012	exon5	c.T657C	p.H219H	.	.	.
RELN	5649	broad.mit.edu	36	7	102978906	102978906	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon41	c.C6146T	p.A2049V	.	.	.
RELN	5649	broad.mit.edu	36	7	102981346	102981346	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon39	c.C5966T	p.A1989V	.	.	.
MLL5	55904	broad.mit.edu	36	7	104539722	104539722	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon27	c.T4283C	p.L1428P	.	.	.
SRPK2	6733	broad.mit.edu	36	7	104595089	104595089	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182691	exon5	c.A452G	p.D151G	.	.	.
SRPK2	6733	broad.mit.edu	36	7	104631408	104631408	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182691	exon2	c.A99G	p.P33P	.	.	.
PHF14	9678	broad.mit.edu	36	7	10989288	10989288	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014660	exon3	c.C877A	p.L293I	.	.	.
PHF14	9678	broad.mit.edu	36	7	11020007	11020007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014660	exon5	c.G1154A	p.C385Y	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551392	110551392	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018334	exon2	c.A1328T	p.H443L	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551518	110551518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018334	exon2	c.G1454A	p.G485D	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112200162	112200162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022484	exon4	c.G1456A	p.E486K	.	.	.
FOXP2	93986	broad.mit.edu	36	7	114117081	114117081	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014491	exon17	c.T2012A	p.I671N	.	.	.
MDFIC	29969	broad.mit.edu	36	7	114443140	114443140	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199072	exon5	c.A983T	p.D328V	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117162628	117162628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033427	exon15	c.G3619A	p.E1207K	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117219502	117219502	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033427	exon4	c.A984T	p.V328V	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121411099	121411099	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon7	c.T764C	p.I255T	.	.	.
GPR37	2861	broad.mit.edu	36	7	124191747	124191747	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005302	exon1	c.C520T	p.P174S	.	.	.
POT1	25913	broad.mit.edu	36	7	124319645	124319645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015450	exon6	c.C35T	p.T12I	.	.	.
GRM8	2918	broad.mit.edu	36	7	125960883	125960883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127323	exon9	c.G1789A	p.A597T	.	.	.
GCC1	79571	broad.mit.edu	36	7	127009903	127009903	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024523	exon2	c.C1729A	p.R577S	.	.	.
LEP	3952	broad.mit.edu	36	7	127679329	127679329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000230	exon2	c.G22A	p.G8R	.	.	.
FLNC	2318	broad.mit.edu	36	7	128276663	128276663	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon30	c.T4994C	p.V1665A	.	.	.
FLNC	2318	broad.mit.edu	36	7	128280181	128280181	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon37	c.A6068G	p.H2023R	.	.	.
FAM40B	57464	broad.mit.edu	36	7	128910094	128910094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020704	exon20	c.G2225A	p.R742H	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131842930	131842930	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181775	exon3	c.C1063A	p.L355M	.	.	.
AKR1B1	231	broad.mit.edu	36	7	133784310	133784310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001628	exon5	c.G531A	p.K177K	.	.	.
WDR91	29062	broad.mit.edu	36	7	134521560	134521560	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014149	exon15	c.C2127T	p.G709G	.	.	.
CNOT4	4850	broad.mit.edu	36	7	134750492	134750492	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190850	exon4	c.T432C	p.N144N	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136350559	136350559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000739	exon4	c.C407T	p.T136I	.	.	.
SVOPL	136306	broad.mit.edu	36	7	137931753	137931753	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174959	exon11	c.C960T	p.C320C	.	.	.
ETV1	2115	broad.mit.edu	36	7	13906952	13906952	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163147	exon11	c.C1079T	p.A360V	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
BRAF	673	broad.mit.edu	36	7	140154327	140154327	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon5	c.A613C	p.K205Q	.	.	.
AGK	55750	broad.mit.edu	36	7	140961794	140961794	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018238	exon8	c.T478G	p.L160V	.	.	.
PRSS37	136242	broad.mit.edu	36	7	141182765	141182765	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171951	exon5	c.C604A	p.Q202K	.	.	.
MGAM	8972	broad.mit.edu	36	7	141376674	141376674	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon11	c.A1265G	p.D422G	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142319916	142319916	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon13	c.G1642A	p.D548N	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142336703	142336703	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon4	c.C429A	p.V143V	.	.	.
PIP	5304	broad.mit.edu	36	7	142542436	142542436	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002652	exon2	c.C123T	p.D41D	.	.	.
CASP2	835	broad.mit.edu	36	7	142701509	142701509	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032983	exon4	c.T322C	p.S108P	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143691692	143691692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005435	exon2	c.C997T	p.P333S	.	.	.
ZNF282	8427	broad.mit.edu	36	7	148526692	148526692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003575	exon2	c.G500A	p.R167Q	.	.	.
RARRES2	5919	broad.mit.edu	36	7	149667095	149667095	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002889	exon4	c.G288A	p.R96R	.	.	.
GIMAP2	26157	broad.mit.edu	36	7	150020839	150020839	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015660	exon3	c.C532T	p.R178X	.	.	.
ACCN3	9311	broad.mit.edu	36	7	150380460	150380460	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020321	exon10	c.C1483T	p.R495X	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156654512	156654512	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon3	c.C130T	p.R44X	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156706219	156706219	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon15	c.T1990C	p.S664P	.	.	.
WDR60	55112	broad.mit.edu	36	7	158427392	158427392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018051	exon24	c.G2794A	p.G932R	.	.	.
SOSTDC1	25928	broad.mit.edu	36	7	16468861	16468861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015464	exon2	c.G458A	p.R153H	.	.	.
AHR	196	broad.mit.edu	36	7	17345150	17345150	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001621	exon10	c.A1176C	p.T392T	.	.	.
AHR	196	broad.mit.edu	36	7	17345353	17345353	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001621	exon10	c.T1379G	p.M460R	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151087	19151087	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152898	exon1	c.A424G	p.T142A	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20734555	20734555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178559	exon14	c.G1484A	p.G495E	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20761768	20761768	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178559	exon19	c.A2435G	p.Q812R	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21597562	21597562	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon14	c.A2509T	p.I837F	.	.	.
CARD11	84433	broad.mit.edu	36	7	2943271	2943271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032415	exon9	c.C1267T	p.R423W	.	.	.
C7orf16	10842	broad.mit.edu	36	7	31703251	31703251	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006658	exon4	c.C383T	p.A128V	.	.	.
PDE1C	5137	broad.mit.edu	36	7	31831008	31831008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001191056	exon13	c.G1404A	p.S468S	.	.	.
SEPT7	989	broad.mit.edu	36	7	35909282	35909282	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001788	exon12	c.T1204C	p.S402P	.	.	.
GPR141	353345	broad.mit.edu	36	7	37747211	37747211	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181791	exon1	c.A691T	p.I231L	.	.	.
SFRP4	6424	broad.mit.edu	36	7	37920512	37920512	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003014	exon2	c.C514T	p.R172C	.	.	.
GLI3	2737	broad.mit.edu	36	7	41971652	41971652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon15	c.C3544T	p.R1182W	.	.	.
AEBP1	165	broad.mit.edu	36	7	44119976	44119976	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129	exon21	c.T3068C	p.L1023P	.	.	.
ADCY1	107	broad.mit.edu	36	7	45684060	45684060	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021116	exon9	c.A1673G	p.Y558C	.	.	.
ACTB	60	broad.mit.edu	36	7	5534845	5534845	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101	exon4	c.T395C	p.M132T	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57191967	57191967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033273	exon5	c.C1097T	p.S366L	.	.	.
AIMP2	7965	broad.mit.edu	36	7	6023993	6023993	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006303	exon3	c.T365C	p.I122T	.	.	.
AIMP2	7965	broad.mit.edu	36	7	6024089	6024089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006303	exon3	c.C461T	p.T154M	.	.	.
RSPH10B	222967	broad.mit.edu	36	7	6764034	6764034	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173565	exon3	c.C201T	p.N67N	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69002282	69002282	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015570	exon2	c.A384G	p.A128A	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70768444	70768444	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022479	exon7	c.C1193T	p.A398V	.	.	.
FKBP6	8468	broad.mit.edu	36	7	72382165	72382165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003602	exon4	c.G342A	p.P114P	.	.	.
PHTF2	57157	broad.mit.edu	36	7	77407857	77407857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020432	exon12	c.G1703A	p.R568Q	.	.	.
GNAI1	2770	broad.mit.edu	36	7	79666487	79666487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002069	exon4	c.G314A	p.R105H	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81429255	81429255	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000722	exon36	c.T2857C	p.F953L	.	.	.
PCLO	27445	broad.mit.edu	36	7	82419239	82419239	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.G8966A	p.G2989E	.	.	.
PCLO	27445	broad.mit.edu	36	7	82422740	82422740	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.G5465T	p.R1822M	.	.	.
SUN1	23353	broad.mit.edu	36	7	872152	872152	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130965	exon16	c.C1902T	p.Y634Y	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89739154	89739154	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160138	exon8	c.A752G	p.E251G	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91468818	91468818	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon8	c.A1651G	p.I551V	.	.	.
KRIT1	889	broad.mit.edu	36	7	91703730	91703730	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194455	exon7	c.C418T	p.R140X	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92602107	92602107	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.T1114C	p.S372P	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93872951	93872951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon11	c.C517T	p.L173F	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94665695	94665695	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon5	c.A1853C	p.E618A	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94755798	94755798	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon13	c.A2892T	p.G964G	.	.	.
PON3	5446	broad.mit.edu	36	7	94839570	94839570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000940	exon4	c.G218A	p.G73D	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98401326	98401326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon47	c.C6973T	p.R2325W	.	.	.
ZKSCAN5	23660	broad.mit.edu	36	7	98966797	98966797	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145102	exon7	c.C1509A	p.G503G	.	.	.
AGFG2	3268	broad.mit.edu	36	7	99989755	99989755	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006076	exon5	c.G689A	p.G230D	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138082828	138082828	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130840	exon12	c.1202delT	p.F401fs	.	.	.
OR2A14	135941	broad.mit.edu	36	7	143457519	143457519	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001659	exon1	c.381delC	p.H127fs	.	.	.
INTS1	26173	broad.mit.edu	36	7	1491572	1491572	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080453	exon23	c.3036delC	p.P1012fs	.	.	.
ZDHHC4	55146	broad.mit.edu	36	7	6588374	6588374	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018106	exon5	c.337delT	p.F113fs	.	.	.
SRCRB4D	136853	broad.mit.edu	36	7	75871568	75871570	+	In_Frame_Del	DEL	AGG	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080744	exon2	c.123_125del	p.41_42del	.	.	.
ICA1	3382	broad.mit.edu	36	7	8164776	8164776	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004968	exon7	c.611delA	p.N204fs	.	.	.
ANK1	286	broad.mit.edu	36	8	41691735	41691736	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020475	exon15	c.1617_1618insC	p.P539fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100563071	100563071	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon25	c.T3735A	p.N1245K	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100602346	100602346	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon30	c.C4677T	p.G1559G	.	.	.
DPYS	1807	broad.mit.edu	36	8	105505728	105505728	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001385	exon7	c.T1158A	p.F386L	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106883286	106883286	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012082	exon8	c.C1800T	p.G600G	.	.	.
TTC35	9694	broad.mit.edu	36	8	109531880	109531880	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014673	exon3	c.C202G	p.R68G	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110463935	110463935	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon4	c.A376G	p.T126A	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113490346	113490346	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon33	c.T5487A	p.S1829S	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113574046	113574046	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon31	c.A5126G	p.N1709S	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113718395	113718395	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon22	c.C3542G	p.P1181R	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116496161	116496161	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon7	c.C3151A	p.Q1051K	.	.	.
EIF3H	8667	broad.mit.edu	36	8	117728006	117728006	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003756	exon7	c.G846A	p.Q282Q	.	.	.
EXT1	2131	broad.mit.edu	36	8	119192015	119192015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000127	exon1	c.C452T	p.A151V	.	.	.
COLEC10	10584	broad.mit.edu	36	8	120187264	120187264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006438	exon6	c.G487A	p.V163M	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032157	12032157	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201402	exon1	c.C1522G	p.L508V	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124419104	124419104	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014109	exon21	c.A2993G	p.H998R	.	.	.
TRIB1	10221	broad.mit.edu	36	8	126517699	126517699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025195	exon3	c.C923T	p.S308F	.	.	.
OC90	729330	broad.mit.edu	36	8	133113333	133113333	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080399	exon12	c.C1008T	p.G336G	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401275	13401275	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon2	c.T677G	p.L226R	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139214168	139214168	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015912	exon20	c.G4071T	p.K1357N	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139233115	139233115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015912	exon13	c.C2785T	p.L929F	.	.	.
EIF2C2	27161	broad.mit.edu	36	8	141637820	141637820	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164623	exon7	c.T824C	p.M275T	.	.	.
DENND3	22898	broad.mit.edu	36	8	142254664	142254664	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014957	exon14	c.T2219C	p.M740T	.	.	.
GML	2765	broad.mit.edu	36	8	143919560	143919560	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002066	exon3	c.A98T	p.D33V	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143958029	143958029	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001026213	exon1	c.T203C	p.V68A	.	.	.
PLEC	5339	broad.mit.edu	36	8	145063066	145063066	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201383	exon32	c.A12923T	p.D4308V	.	.	.
MTMR7	9108	broad.mit.edu	36	8	17272949	17272949	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004686	exon3	c.T278C	p.V93A	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17656854	17656854	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon2	c.A743G	p.D248G	.	.	.
ASAH1	427	broad.mit.edu	36	8	17959342	17959342	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004315	exon14	c.A1217G	p.D406G	.	.	.
LPL	4023	broad.mit.edu	36	8	19862765	19862765	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000237	exon8	c.T1213G	p.L405V	.	.	.
PHYHIP	9796	broad.mit.edu	36	8	22141761	22141761	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014759	exon2	c.T55C	p.S19P	.	.	.
POLR3D	661	broad.mit.edu	36	8	22161394	22161394	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001722	exon4	c.C289T	p.R97X	.	.	.
EGR3	1960	broad.mit.edu	36	8	22604038	22604038	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004430	exon2	c.A1057G	p.K353E	.	.	.
ENTPD4	9583	broad.mit.edu	36	8	23353237	23353237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004901	exon9	c.G1019A	p.R340K	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24400592	24400592	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon11	c.T963C	p.D321D	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25309081	25309081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024940	exon45	c.C4633T	p.H1545Y	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26778068	26778068	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033302	exon1	c.G336A	p.A112A	.	.	.
SCARA3	51435	broad.mit.edu	36	8	27584400	27584400	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016240	exon6	c.C1434T	p.G478G	.	.	.
SCARA5	286133	broad.mit.edu	36	8	27820595	27820595	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173833	exon6	c.G1085A	p.R362H	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2843078	2843078	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon54	c.G8240T	p.R2747L	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28629746	28629746	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001440	exon3	c.G251A	p.R84H	.	.	.
TEX15	56154	broad.mit.edu	36	8	30814670	30814670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon3	c.C7523T	p.A2508V	.	.	.
PURG	29942	broad.mit.edu	36	8	30973661	30973661	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001015508	exon2	c.T959A	p.V320D	.	.	.
MAK16	84549	broad.mit.edu	36	8	33466195	33466195	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032509	exon5	c.C388A	p.R130R	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36882445	36882445	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031836	exon20	c.T2071C	p.W691R	.	.	.
DDHD2	23259	broad.mit.edu	36	8	38214826	38214826	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164232	exon5	c.G564T	p.Q188H	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38405021	38405021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174066	exon3	c.C181T	p.P61S	.	.	.
ADAM32	203102	broad.mit.edu	36	8	39198345	39198345	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145004	exon13	c.A1293T	p.K431N	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39561987	39561987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190956	exon2	c.C91T	p.R31W	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39585725	39585725	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190956	exon4	c.T196G	p.L66V	.	.	.
MYST3	7994	broad.mit.edu	36	8	41909831	41909831	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099413	exon18	c.G5064A	p.Q1688Q	.	.	.
DKK4	27121	broad.mit.edu	36	8	42350830	42350830	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014420	exon4	c.C620T	p.T207I	.	.	.
HOOK3	84376	broad.mit.edu	36	8	42938754	42938754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032410	exon9	c.G759A	p.Q253Q	.	.	.
CSMD1	64478	broad.mit.edu	36	8	4482396	4482396	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon2	c.T178A	p.W60R	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48924349	48924349	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon54	c.T7198C	p.W2400R	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52547380	52547380	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144651	exon8	c.G732A	p.E244E	.	.	.
CA8	767	broad.mit.edu	36	8	61341141	61341141	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004056	exon3	c.C314A	p.P105H	.	.	.
ASPH	444	broad.mit.edu	36	8	62637911	62637911	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004318	exon18	c.C1383T	p.G461G	.	.	.
ANGPT2	285	broad.mit.edu	36	8	6407659	6407659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001118888	exon1	c.G205A	p.A69T	.	.	.
TTPA	7274	broad.mit.edu	36	8	64141018	64141018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000370	exon3	c.C551T	p.T184M	.	.	.
DNAJC5B	85479	broad.mit.edu	36	8	67126379	67126379	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033105	exon3	c.A43G	p.T15A	.	.	.
MSC	9242	broad.mit.edu	36	8	72917489	72917489	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005098	exon2	c.A582C	p.E194D	.	.	.
JPH1	56704	broad.mit.edu	36	8	75319588	75319588	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020647	exon4	c.G1635T	p.E545D	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77780329	77780329	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.A1451C	p.D484A	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77781295	77781295	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.A2417C	p.Q806P	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77926450	77926450	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.G4738A	p.V1580I	.	.	.
TPD52	7163	broad.mit.edu	36	8	81113005	81113005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025252	exon6	c.G576A	p.K192K	.	.	.
RALYL	138046	broad.mit.edu	36	8	85937183	85937183	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100392	exon7	c.G511T	p.G171X	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87180405	87180405	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152565	exon1	c.C82A	p.L28M	.	.	.
WWP1	11059	broad.mit.edu	36	8	87462859	87462859	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007013	exon5	c.G219A	p.T73T	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87748406	87748406	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019098	exon6	c.C715T	p.R239C	.	.	.
TMEM55A	55529	broad.mit.edu	36	8	92102733	92102733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018710	exon2	c.G182A	p.C61Y	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94815639	94815639	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203390	exon3	c.C2176A	p.P726T	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94816419	94816419	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203390	exon3	c.C1396T	p.L466L	.	.	.
CDH17	1015	broad.mit.edu	36	8	95212341	95212341	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144663	exon16	c.C2223T	p.V741V	.	.	.
GDF6	392255	broad.mit.edu	36	8	97226101	97226101	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001557	exon2	c.C1234T	p.P412S	.	.	.
PTDSS1	9791	broad.mit.edu	36	8	97343485	97343485	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014754	exon1	c.A41G	p.D14G	.	.	.
PGCP	10404	broad.mit.edu	36	8	97866320	97866320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016134	exon2	c.G19A	p.A7T	.	.	.
POP1	10940	broad.mit.edu	36	8	99232011	99232011	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145860	exon14	c.G2025A	p.E675E	 POP1,breast,NS,Substitution - Missense,+2 	.	.
STK3	6788	broad.mit.edu	36	8	99629510	99629510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006281	exon9	c.G1004A	p.G335D	.	.	.
CNOT7	29883	broad.mit.edu	36	8	17139190	17139190	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013354	exon4	c.375delA	p.K125fs	.	.	.
INTS8	55656	broad.mit.edu	36	8	95961597	95961597	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017864	exon27	c.2947delA	p.K983fs	.	.	.
GALNT12	79695	broad.mit.edu	36	9	100646285	100646285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024642	exon8	c.C1431T	p.Y477Y	.	.	.
INVS	27130	broad.mit.edu	36	9	102094696	102094696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014425	exon14	c.G2336A	p.R779Q	.	.	.
DMRT2	10655	broad.mit.edu	36	9	1046222	1046222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181872	exon4	c.G635A	p.R212H	.	.	.
TAL2	6887	broad.mit.edu	36	9	107464814	107464814	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005421	exon1	c.G216A	p.G72G	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108730385	108730385	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon3	c.G4371A	p.Q1457Q	.	.	.
ACTL7A	10881	broad.mit.edu	36	9	110664716	110664716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006687	exon1	c.C293T	p.T98M	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112203105	112203105	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon40	c.T9672C	p.D3224D	.	.	.
MUSK	4593	broad.mit.edu	36	9	112602990	112602990	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166280	exon13	c.A2253T	p.L751L	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113516626	113516626	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173521	exon15	c.A2143G	p.K715E	.	.	.
ALAD	210	broad.mit.edu	36	9	115191112	115191112	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000031	exon11	c.C897G	p.A299A	.	.	.
C9orf43	257169	broad.mit.edu	36	9	115227823	115227823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152786	exon11	c.G1022A	p.R341H	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116067056	116067056	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032888	exon30	c.G3281A	p.R1094Q	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116226520	116226520	+	Missense_Mutation	SNP	T	C	C	rs45530335	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015404	exon6	c.A1331G	p.Y444C	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116226623	116226623	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015404	exon6	c.G1228A	p.G410S	.	.	.
TNC	3371	broad.mit.edu	36	9	116850424	116850424	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon16	c.G4788T	p.E1596D	.	.	.
TRIM32	22954	broad.mit.edu	36	9	118500237	118500237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099679	exon2	c.G395A	p.G132D	.	.	.
MEGF9	1955	broad.mit.edu	36	9	122424831	122424831	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080497	exon3	c.T827C	p.V276A	.	.	.
MORN5	254956	broad.mit.edu	36	9	123976651	123976651	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198469	exon4	c.C363T	p.Y121Y	.	.	.
ZBTB26	57684	broad.mit.edu	36	9	124721679	124721679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020924	exon2	c.G356A	p.C119Y	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126610042	126610042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182487	exon7	c.C1330T	p.R444C	.	.	.
GARNL3	84253	broad.mit.edu	36	9	129138260	129138260	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032293	exon11	c.C906T	p.I302I	.	.	.
GARNL3	84253	broad.mit.edu	36	9	129157435	129157435	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032293	exon20	c.G1798T	p.E600X	.	.	.
STXBP1	6812	broad.mit.edu	36	9	129470274	129470274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003165	exon10	c.G889A	p.A297T	.	.	.
CIZ1	25792	broad.mit.edu	36	9	129980573	129980573	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001131015	exon10	c.C1348T	p.P450S	.	.	.
DNM1	1759	broad.mit.edu	36	9	130020766	130020766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon3	c.G320A	p.R107K	.	.	.
DNM1	1759	broad.mit.edu	36	9	130044370	130044370	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon14	c.C1595T	p.A532V	.	.	.
C9orf114	51490	broad.mit.edu	36	9	130629222	130629222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016390	exon4	c.G278A	p.R93H	.	.	.
ABL1	25	broad.mit.edu	36	9	132749227	132749227	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005157	exon11	c.C1729T	p.R577X	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132910794	132910794	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006059	exon8	c.G1445A	p.C482Y	.	.	.
NUP214	8021	broad.mit.edu	36	9	133029085	133029085	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005085	exon20	c.A2731G	p.S911G	.	.	.
POMT1	10585	broad.mit.edu	36	9	133375505	133375505	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007171	exon9	c.C803A	p.A268D	.	.	.
BARHL1	56751	broad.mit.edu	36	9	134454494	134454494	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020064	exon3	c.T748C	p.Y250H	.	.	.
GTF3C5	9328	broad.mit.edu	36	9	134907418	134907418	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122823	exon2	c.A277G	p.R93G	.	.	.
REXO4	57109	broad.mit.edu	36	9	135267836	135267836	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020385	exon3	c.A599G	p.D200G	.	.	.
ADAMTS13	11093	broad.mit.edu	36	9	135295303	135295303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139025	exon16	c.C1804T	p.R602C	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136857545	136857545	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon63	c.G5041A	p.V1681I	.	.	.
MRPS2	51116	broad.mit.edu	36	9	137535415	137535415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016034	exon4	c.G506A	p.R169H	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137852896	137852896	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015447	exon11	c.G3432A	p.T1144T	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137853481	137853481	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015447	exon11	c.C2847T	p.D949D	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137853933	137853933	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015447	exon11	c.G2395T	p.A799S	.	.	.
UBAC1	10422	broad.mit.edu	36	9	137977991	137977991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016172	exon5	c.G489A	p.A163A	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138470024	138470024	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon20	c.C5707T	p.Q1903X	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138491220	138491220	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014866	exon3	c.G669A	p.Q223Q	.	.	.
TRAF2	7186	broad.mit.edu	36	9	138922425	138922425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021138	exon5	c.G449A	p.R150H	.	.	.
COBRA1	25920	broad.mit.edu	36	9	139270680	139270680	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015456	exon3	c.C345T	p.C115C	.	.	.
EHMT1	79813	broad.mit.edu	36	9	139828711	139828711	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024757	exon22	c.T3188C	p.V1063A	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18665872	18665872	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052866	exon10	c.T1103G	p.I368S	.	.	.
FAM154A	158297	broad.mit.edu	36	9	18940922	18940922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153707	exon2	c.C52T	p.P18S	.	.	.
IFNA16	3449	broad.mit.edu	36	9	21206970	21206970	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002173	exon1	c.T335G	p.L112R	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23682803	23682803	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171197	exon6	c.A793T	p.I265L	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2708013	2708013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133497	exon1	c.C274T	p.P92S	.	.	.
FANCG	2189	broad.mit.edu	36	9	35066007	35066007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004629	exon9	c.G1095T	p.E365D	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35226523	35226523	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006377	exon4	c.C210A	p.I70I	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35537106	35537106	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014806	exon2	c.A588G	p.E196E	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35538047	35538047	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014806	exon2	c.G1529T	p.R510L	.	.	.
GBA2	57704	broad.mit.edu	36	9	35729047	35729047	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020944	exon11	c.G1747T	p.A583S	.	.	.
NPR2	4882	broad.mit.edu	36	9	35782776	35782776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon1	c.C371T	p.A124V	.	.	.
OR13J1	392309	broad.mit.edu	36	9	35860002	35860002	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004487	exon1	c.C397T	p.H133Y	.	.	.
GNE	10020	broad.mit.edu	36	9	36223937	36223937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128227	exon5	c.G1055A	p.R352H	.	.	.
CNTNAP3	79937	broad.mit.edu	36	9	39089923	39089923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033655	exon18	c.C2980T	p.P994S	.	.	.
JAK2	3717	broad.mit.edu	36	9	5079700	5079700	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004972	exon20	c.C2598T	p.C866C	.	.	.
FAM75A5	727905	broad.mit.edu	36	9	65246289	65246289	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015667	exon4	c.G1091A	p.R364Q	.	.	.
RORB	6096	broad.mit.edu	36	9	76435081	76435081	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006914	exon2	c.T71C	p.V24A	.	.	.
TLE4	7091	broad.mit.edu	36	9	81457410	81457410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007005	exon7	c.C473T	p.P158L	.	.	.
CTSL1	1514	broad.mit.edu	36	9	89533468	89533468	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145918	exon5	c.T545C	p.L182P	.	.	.
CDK20	23552	broad.mit.edu	36	9	89773979	89773979	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170640	exon5	c.C606T	p.C202C	.	.	.
CDK20	23552	broad.mit.edu	36	9	89775984	89775984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170640	exon3	c.G276A	p.V92V	.	.	.
SHC3	53358	broad.mit.edu	36	9	90842998	90842998	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016848	exon11	c.C1386T	p.N462N	.	.	.
NOL8	55035	broad.mit.edu	36	9	94121454	94121454	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017948	exon5	c.C287T	p.A96V	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97271062	97271062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon14	c.C1589T	p.P530L	 PTCH1,skin,chest,Substitution - Missense,0 	.	.
ZNF510	22869	broad.mit.edu	36	9	98562019	98562019	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014930	exon6	c.G914T	p.G305V	.	.	.
SLC31A2	1318	broad.mit.edu	36	9	114959894	114959894	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001860	exon2	c.73delG	p.G25fs	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116024344	116024344	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032888	exon14	c.2442delC	p.G814fs	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130059211	130059211	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004486	exon26	c.2965delT	p.Y989fs	.	.	.
C9orf86	55684	broad.mit.edu	36	9	138854039	138854039	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001173988	exon13	c.1834delC	p.P612fs	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40762182	40762183	+	Frame_Shift_Del	DEL	AA	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033160	exon5	c.3092_3093del	p.1031_1031del	.	.	.
FAM74A3	728495	broad.mit.edu	36	9	40705906	40705906	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PNMA3	29944	broad.mit.edu	36	X	151976099	151976100	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013364	exon2	c.31_32insG	p.R11fs	.	.	.
TCEAL4	79921	broad.mit.edu	36	X	102728766	102728766	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024863	exon3	c.G507T	p.K169N	.	.	.
MORF4L2	9643	broad.mit.edu	36	X	102817785	102817785	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142429	exon5	c.A827G	p.Y276C	.	.	.
RNF128	79589	broad.mit.edu	36	X	105917815	105917815	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194463	exon4	c.T816C	p.P272P	.	.	.
TEX13B	56156	broad.mit.edu	36	X	107111785	107111785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031273	exon2	c.C229T	p.R77C	.	.	.
ZBTB33	10009	broad.mit.edu	36	X	119271345	119271345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006777	exon2	c.G47A	p.G16D	.	.	.
GRIA3	2892	broad.mit.edu	36	X	122215045	122215045	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007325	exon3	c.A479C	p.K160T	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123345678	123345678	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon29	c.C6763T	p.R2255X	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125126701	125126701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013628	exon1	c.C888T	p.S296S	.	.	.
OCRL	4952	broad.mit.edu	36	X	128548710	128548710	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001587	exon19	c.A2166G	p.R722R	.	.	.
ARHGAP36	158763	broad.mit.edu	36	X	130043537	130043537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144967	exon2	c.G217A	p.A73T	.	.	.
IL3RA	3563	broad.mit.edu	36	X	1424308	1424308	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002183	exon3	c.A164G	p.D55G	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142545981	142545981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173078	exon2	c.C610T	p.R204C	.	.	.
MAGEA6	4105	broad.mit.edu	36	X	151620655	151620655	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005363	exon3	c.T689G	p.V230G	.	.	.
PNMA5	114824	broad.mit.edu	36	X	151909909	151909909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103150	exon2	c.C890T	p.A297V	.	.	.
FIGF	2277	broad.mit.edu	36	X	15291249	15291249	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004469	exon2	c.G204A	p.R68R	.	.	.
MECP2	4204	broad.mit.edu	36	X	152949413	152949413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004992	exon4	c.C1060T	p.R354C	.	.	.
MTCP1	4515	broad.mit.edu	36	X	153946995	153946995	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018025	exon4	c.A288G	p.V96V	.	.	.
GRPR	2925	broad.mit.edu	36	X	16078597	16078597	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005314	exon2	c.T662A	p.I221N	.	.	.
PDHA1	5160	broad.mit.edu	36	X	19283521	19283521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173454	exon8	c.G851A	p.G284D	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21444550	21444550	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168647	exon9	c.G837A	p.V279V	.	.	.
DHRSX	207063	broad.mit.edu	36	X	2149238	2149238	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145177	exon7	c.C837T	p.Y279Y	.	.	.
YY2	404281	broad.mit.edu	36	X	21773356	21773356	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015884	exon3	c.C371G	p.S124C	.	.	.
ACOT9	23597	broad.mit.edu	36	X	23632781	23632781	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037171	exon15	c.G1209A	p.T403T	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36938227	36938227	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013736	exon1	c.C1823T	p.P608L	.	.	.
MED14	9282	broad.mit.edu	36	X	40403776	40403776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004229	exon27	c.G3712A	p.G1238R	.	.	.
USP11	8237	broad.mit.edu	36	X	46987775	46987775	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004651	exon13	c.C1749A	p.G583G	.	.	.
SYN1	6853	broad.mit.edu	36	X	47320878	47320878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133499	exon7	c.C943T	p.R315C	.	.	.
TBC1D25	4943	broad.mit.edu	36	X	48304186	48304186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002536	exon6	c.G1946A	p.R649H	.	.	.
OTUD5	55593	broad.mit.edu	36	X	48677018	48677018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136157	exon4	c.C820T	p.R274W	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51656887	51656887	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006986	exon4	c.C1396T	p.R466X	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53453138	53453138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006306	exon8	c.C1276T	p.R426W	.	.	.
RIBC1	158787	broad.mit.edu	36	X	53473631	53473631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031745	exon6	c.G649A	p.A217T	.	.	.
PFKFB1	5207	broad.mit.edu	36	X	55002986	55002986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002625	exon4	c.C383T	p.A128V	.	.	.
ALAS2	212	broad.mit.edu	36	X	55056698	55056698	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037967	exon9	c.C1435A	p.L479M	.	.	.
RRAGB	10325	broad.mit.edu	36	X	55801473	55801473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016656	exon11	c.G1097A	p.G366E	.	.	.
AR	367	broad.mit.edu	36	X	66858530	66858530	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011645	exon6	c.A853T	p.I285F	.	.	.
PJA1	64219	broad.mit.edu	36	X	68298131	68298131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032396	exon2	c.C1511T	p.A504V	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395120	69395120	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002565	exon1	c.T1080C	p.P360P	.	.	.
TAF1	6872	broad.mit.edu	36	X	70596183	70596183	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138923	exon36	c.G5118A	p.Q1706Q	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75567141	75567141	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020932	exon1	c.T2414G	p.L805R	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91760167	91760167	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon7	c.G3616A	p.A1206T	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549646	99549646	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105243	exon1	c.G606A	p.S202S	.	.	.
TSPAN6	7105	broad.mit.edu	36	X	99778342	99778342	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003270	exon1	c.G6A	p.A2A	.	.	.
DCX	1641	broad.mit.edu	36	X	110531125	110531125	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178153	exon3	c.454delA	p.T152fs	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134821720	134821720	+	Frame_Shift_Del	DEL	G	-	-	rs4829584	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			Illumina HiSeq	NM_018666	exon18	c.2463delG	p.K821fs	.	.	.
TKTL1	8277	broad.mit.edu	36	X	153202442	153202442	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145933	exon8	c.1156delG	p.G386fs	.	.	.
USP9X	8239	broad.mit.edu	36	X	40973979	40973979	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon43	c.7434delA	p.V2478fs	.	.	.
ARAF	369	broad.mit.edu	36	X	47311038	47311038	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001654	exon7	c.614delC	p.A205fs	.	.	.
HMGN5	79366	broad.mit.edu	36	X	80257119	80257119	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030763	exon7	c.534delA	p.K178fs	.	.	.
TBL1X	6907	broad.mit.edu	36	X	9619692	9619692	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139468	exon8	c.537delC	p.G179fs	.	.	.
