Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
KIAA0754	643314	broad.mit.edu	37	1	39877862	39877862	+	Missense_Mutation	SNP	A	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:39877862A>C	uc009vvt.1	+	1	2687	c.1925A>C	c.(1924-1926)AAT>ACT	p.N642T	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	506											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACTGAGGGGAATGGTGAGGAG	0.438													63	181	---	---	---	---	PASS
DPH2	1802	broad.mit.edu	37	1	44438317	44438317	+	3'UTR	SNP	C	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:44438317C>G	uc001ckz.2	+	6					DPH2_uc001cla.2_3'UTR|DPH2_uc010okk.1_3'UTR|DPH2_uc001clb.2_3'UTR|ATP6V0B_uc001clc.2_5'Flank|ATP6V0B_uc001cld.2_5'Flank|ATP6V0B_uc001cle.2_5'Flank|ATP6V0B_uc001clf.2_5'Flank	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a						peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				TTGAAGGACCCTGGAAGGAGG	0.567													4	21	---	---	---	---	PASS
HPDL	84842	broad.mit.edu	37	1	45794010	45794010	+	3'UTR	SNP	C	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:45794010C>A	uc001cne.2	+	1						NM_032756	NP_116145	Q96IR7	HPDL_HUMAN	glyoxalase domain containing 1						aromatic amino acid family metabolic process		4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	Acute lymphoblastic leukemia(166;0.155)					GGAACATCTGCAGGAGGCCCA	0.587													6	11	---	---	---	---	PASS
BCAR3	8412	broad.mit.edu	37	1	94032907	94032907	+	Missense_Mutation	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:94032907T>C	uc001dpz.2	-	11	2503	c.2228A>G	c.(2227-2229)CAT>CGT	p.H743R	BCAR3_uc001dqa.2_Missense_Mutation_p.H743R|BCAR3_uc001dqb.2_Missense_Mutation_p.H743R|BCAR3_uc001dpx.3_Missense_Mutation_p.H419R|BCAR3_uc001dpy.2_Missense_Mutation_p.H652R	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	743	Ras-GEF.				response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		TGTTGCCAAATGGTTCAGCAT	0.512													29	52	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	1	142803543	142803543	+	Intron	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:142803543C>T	uc001eiw.1	+						uc001ejb.2_RNA|uc001ejc.2_RNA					Homo sapiens PNAS-130 mRNA, complete cds.																		TGTTGGAATTCCTGATGAATC	0.179													7	204	---	---	---	---	PASS
LOC200030	200030	broad.mit.edu	37	1	148251749	148251749	+	Intron	SNP	T	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:148251749T>A	uc001eqe.2	-						LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc010pae.1_Intron|NBPF14_uc010paf.1_Intron|NBPF14_uc009wkf.1_Intron|uc010pah.1_3'UTR|uc010pai.1_3'UTR|uc001eqz.2_3'UTR|uc001erb.2_3'UTR|uc001erd.3_3'UTR|uc001erc.3_RNA|uc010paj.1_3'UTR			Q86T75	NBPFB_HUMAN	SubName: Full=cDNA FLJ78770;							cytoplasm					0						AGAATAGGAATACAGCCATGC	0.493													3	56	---	---	---	---	PASS
SEMA6C	10500	broad.mit.edu	37	1	151105698	151105698	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:151105698C>T	uc001ewu.2	-	19	2355	c.2055G>A	c.(2053-2055)CCG>CCA	p.P685P	SEMA6C_uc001ewv.2_Silent_p.P717P|SEMA6C_uc001eww.2_Silent_p.P677P|SEMA6C_uc010pcq.1_Missense_Mutation_p.R619H	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	685	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCTCCGGAGGCGGCAGGAAGG	0.771													7	12	---	---	---	---	PASS
ADAR	103	broad.mit.edu	37	1	154574192	154574192	+	Missense_Mutation	SNP	T	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:154574192T>A	uc001ffh.2	-	2	1126	c.926A>T	c.(925-927)AAT>ATT	p.N309I	ADAR_uc001ffj.2_Missense_Mutation_p.N309I|ADAR_uc001ffi.2_Missense_Mutation_p.N309I|ADAR_uc001ffk.2_Missense_Mutation_p.N14I|ADAR_uc001ffl.1_Missense_Mutation_p.N14I	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	309	DRADA 2.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GTCAGACACATTGAAGAGATA	0.453													38	73	---	---	---	---	PASS
OR6N1	128372	broad.mit.edu	37	1	158735823	158735823	+	Missense_Mutation	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:158735823G>A	uc010piq.1	-	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CTGCACATAGGAGCAGAGGAT	0.493													38	125	---	---	---	---	PASS
PPP1R12B	4660	broad.mit.edu	37	1	202394748	202394748	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:202394748C>T	uc001gya.1	+	4	740	c.596C>T	c.(595-597)GCC>GTC	p.A199V	PPP1R12B_uc001gxy.2_Missense_Mutation_p.A199V|PPP1R12B_uc009xad.1_Missense_Mutation_p.A5V|PPP1R12B_uc009xae.1_Missense_Mutation_p.A199V|PPP1R12B_uc001gxz.1_Missense_Mutation_p.A199V	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	199					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			TTGCAGGATGCCCGCCAGTGG	0.522													6	319	---	---	---	---	PASS
OR2G2	81470	broad.mit.edu	37	1	247752396	247752396	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:247752396C>T	uc010pyy.1	+	1	735	c.735C>T	c.(733-735)TTC>TTT	p.F245F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGACCTGCTTCTCCCACCTGa	0.408													31	61	---	---	---	---	PASS
ASB3	51130	broad.mit.edu	37	2	53955964	53955964	+	Missense_Mutation	SNP	T	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:53955964T>G	uc002rxg.1	-	5	624	c.489A>C	c.(487-489)AAA>AAC	p.K163N	ASB3_uc002rxh.1_Missense_Mutation_p.K90N|ASB3_uc002rxi.3_Missense_Mutation_p.K201N|ASB3_uc010yoo.1_Intron	NM_016115	NP_057199	Q9Y575	ASB3_HUMAN	ankyrin repeat and SOCS box-containing protein 3	163	ANK 5.				intracellular signal transduction					ovary(1)|kidney(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			TAAGAAGCAATTTTATGATCT	0.338													14	49	---	---	---	---	PASS
SPTBN1	6711	broad.mit.edu	37	2	54870209	54870209	+	Silent	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:54870209T>C	uc002rxu.2	+	19	4197	c.3948T>C	c.(3946-3948)CAT>CAC	p.H1316H	SPTBN1_uc002rxx.2_Silent_p.H1303H	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1316	Spectrin 10.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			GGTTGAAGCATCAAGCATTTA	0.418													26	60	---	---	---	---	PASS
SULT1C3	442038	broad.mit.edu	37	2	108872055	108872055	+	Missense_Mutation	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:108872055G>A	uc010ywo.1	+	4	427	c.427G>A	c.(427-429)GAT>AAT	p.D143N		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	143	PAPS.					cytoplasm	alcohol sulfotransferase activity			skin(1)	1						AAATCCCAAGGATTGCCTGGT	0.428													38	80	---	---	---	---	PASS
ATF2	1386	broad.mit.edu	37	2	175957974	175957974	+	Missense_Mutation	SNP	G	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:175957974G>C	uc002ujl.2	-	12	1262	c.1000C>G	c.(1000-1002)CCA>GCA	p.P334A	ATF2_uc010fqv.2_Missense_Mutation_p.P285A|ATF2_uc002ujv.2_Missense_Mutation_p.P81A|ATF2_uc002ujm.2_Missense_Mutation_p.P276A|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Intron|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Missense_Mutation_p.P334A|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Missense_Mutation_p.P316A|ATF2_uc002ujs.2_Missense_Mutation_p.P276A|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_Missense_Mutation_p.P276A|ATF2_uc002ujx.1_RNA	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	334					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			TGGGTCTGTGGAGTTGTGTGA	0.418													11	29	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179433486	179433486	+	Silent	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:179433486G>A	uc010zfg.1	-	275	69893	c.69669C>T	c.(69667-69669)GCC>GCT	p.A23223A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.A16918A|TTN_uc010zfi.1_Silent_p.A16851A|TTN_uc010zfj.1_Silent_p.A16726A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24150							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGATCTTTGGCAACTATTG	0.413													14	52	---	---	---	---	PASS
GLS	2744	broad.mit.edu	37	2	191785692	191785692	+	Intron	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:191785692G>T	uc002usf.2	+						GLS_uc002use.2_Intron|GLS_uc002usg.1_5'UTR|GLS_uc002ush.2_5'UTR	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor						cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ATATTGGCTTGAAACTTAACT	0.249													6	18	---	---	---	---	PASS
COL6A6	131873	broad.mit.edu	37	3	130293121	130293121	+	Missense_Mutation	SNP	C	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:130293121C>G	uc010htl.2	+	7	3330	c.3299C>G	c.(3298-3300)ACA>AGA	p.T1100R		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1100	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AGGATAAATACAGGTACCCCA	0.537													27	67	---	---	---	---	PASS
ECT2	1894	broad.mit.edu	37	3	172480568	172480568	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:172480568C>A	uc003fii.2	+	9	1022	c.884C>A	c.(883-885)TCA>TAA	p.S295*	ECT2_uc010hwv.1_Nonsense_Mutation_p.S326*|ECT2_uc003fih.2_Nonsense_Mutation_p.S294*|ECT2_uc003fij.1_Nonsense_Mutation_p.S295*|ECT2_uc003fik.1_Nonsense_Mutation_p.S295*|ECT2_uc003fil.1_Nonsense_Mutation_p.S326*	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	295	BRCT 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTTGAACCTTCAAAGAAACTT	0.323													3	52	---	---	---	---	PASS
NCAPG	64151	broad.mit.edu	37	4	17819616	17819616	+	Silent	SNP	C	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:17819616C>G	uc003gpp.2	+	7	1199	c.1023C>G	c.(1021-1023)GCC>GCG	p.A341A	NCAPG_uc011bxj.1_5'UTR	NM_022346	NP_071741	Q9BPX3	CND3_HUMAN	chromosome condensation protein G	341					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	protein binding			large_intestine(1)	1				STAD - Stomach adenocarcinoma(129;0.18)		ATTGGTGTGCCCTTTGTGAAT	0.338													42	92	---	---	---	---	PASS
POLR2B	5431	broad.mit.edu	37	4	57860916	57860916	+	Missense_Mutation	SNP	A	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:57860916A>G	uc003hcl.1	+	5	503	c.460A>G	c.(460-462)ATT>GTT	p.I154V	POLR2B_uc011cae.1_Missense_Mutation_p.I147V|POLR2B_uc011caf.1_Missense_Mutation_p.I79V	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	154					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					AAAAATTCCAATTATGTTGCG	0.363													21	66	---	---	---	---	PASS
EXOSC9	5393	broad.mit.edu	37	4	122722621	122722621	+	Silent	SNP	A	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:122722621A>G	uc003iea.2	+	1	150	c.42A>G	c.(40-42)CTA>CTG	p.L14L	EXOSC9_uc003idz.2_Silent_p.L14L|EXOSC9_uc003ieb.2_5'Flank	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	14	ARE binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						GCCGCTTCCTACTCCGTGCCA	0.602													15	44	---	---	---	---	PASS
FBXO4	26272	broad.mit.edu	37	5	41934379	41934379	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:41934379C>T	uc003jmq.2	+	5	923	c.867C>T	c.(865-867)TTC>TTT	p.F289F	FBXO4_uc003jmp.2_Silent_p.F289F|FBXO4_uc003jmr.2_Silent_p.F289F	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	289					positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				TAGATGGGTTCATCTATGTTG	0.358													14	40	---	---	---	---	PASS
MAST4	375449	broad.mit.edu	37	5	66438350	66438350	+	Missense_Mutation	SNP	A	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:66438350A>T	uc003jut.1	+	20	2220	c.2152A>T	c.(2152-2154)AGG>TGG	p.R718W	MAST4_uc003juu.1_Missense_Mutation_p.R728W|MAST4_uc011cra.1_Missense_Mutation_p.R701W|MAST4_uc003juv.2_Missense_Mutation_p.R713W|MAST4_uc003juw.2_Missense_Mutation_p.R713W	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	910	AGC-kinase C-terminal.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		ATGTTCACACAGGTTTTCAAA	0.428													4	8	---	---	---	---	PASS
HLA-H	3136	broad.mit.edu	37	6	29856977	29856977	+	3'UTR	SNP	T	G	G	rs116665472	by1000genomes	TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:29856977T>G	uc010jro.2	+	3					HLA-G_uc011dmb.1_Intron|HLA-H_uc003nod.2_Intron					SubName: Full=cDNA FLJ52667, highly similar to HLA class I histocompatibility antigen, alpha chain H;												0						GTCCAGGCTGTTGTCTGGGTT	0.547													5	9	---	---	---	---	PASS
KIAA1244	57221	broad.mit.edu	37	6	138628466	138628466	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:138628466C>T	uc003qhu.2	+	23	3905	c.3905C>T	c.(3904-3906)GCC>GTC	p.A1302V		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1302					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TTGTTCAGTGCCCTGGAAACA	0.502													14	159	---	---	---	---	PASS
HIP1	3092	broad.mit.edu	37	7	75167431	75167431	+	3'UTR	SNP	A	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:75167431A>G	uc003uds.1	-	31					HIP1_uc011kfz.1_3'UTR	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1						activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GTGGCTGGGGAAATAACACAC	0.507			T	PDGFRB	CMML								11	104	---	---	---	---	PASS
PON3	5446	broad.mit.edu	37	7	95019500	95019500	+	Missense_Mutation	SNP	T	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:95019500T>A	uc003unt.2	-	3	192	c.167A>T	c.(166-168)GAT>GTT	p.D56V	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.D56V	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	56					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			AGGAAGTATATCAATATCTTC	0.373													87	330	---	---	---	---	PASS
SERPINE1	5054	broad.mit.edu	37	7	100780229	100780229	+	Intron	SNP	T	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:100780229T>G	uc003uxt.2	+						SERPINE1_uc011kkj.1_Intron|SERPINE1_uc003uxu.1_3'UTR	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1						angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	GGGGTGGGGGTGGTGCCAGTG	0.348													11	22	---	---	---	---	PASS
SLC26A5	375611	broad.mit.edu	37	7	103048401	103048401	+	Missense_Mutation	SNP	A	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:103048401A>G	uc003vbz.2	-	8	1021	c.785T>C	c.(784-786)CTA>CCA	p.L262P	SLC26A5_uc003vbt.1_Missense_Mutation_p.L262P|SLC26A5_uc003vbu.1_Missense_Mutation_p.L262P|SLC26A5_uc003vbv.1_Missense_Mutation_p.L262P|SLC26A5_uc003vbw.2_Intron|SLC26A5_uc003vbx.2_Missense_Mutation_p.L262P|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	262	Helical; Name=6; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CCCGACGCCTAGGGAACACAC	0.443													21	82	---	---	---	---	PASS
PPP1R3A	5506	broad.mit.edu	37	7	113558913	113558913	+	Missense_Mutation	SNP	C	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:113558913C>A	uc010ljy.1	-	1	170	c.139G>T	c.(139-141)GAT>TAT	p.D47Y		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	47					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TCAGAAGAATCAGAACCTCGT	0.368													38	171	---	---	---	---	PASS
NOM1	64434	broad.mit.edu	37	7	156752728	156752728	+	Missense_Mutation	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:156752728G>T	uc003wmy.2	+	4	1507	c.1492G>T	c.(1492-1494)GAT>TAT	p.D498Y	NOM1_uc010lqp.1_5'Flank	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	498	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CACCGAAAAAGATATTGAACT	0.388													48	96	---	---	---	---	PASS
TEX15	56154	broad.mit.edu	37	8	30700538	30700538	+	Missense_Mutation	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:30700538G>A	uc003xil.2	-	1	5996	c.5996C>T	c.(5995-5997)GCA>GTA	p.A1999V		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1999										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTTAAGGTCTGCAAATTCAGC	0.303													25	33	---	---	---	---	PASS
WASH5P	375690	broad.mit.edu	37	9	14750	14750	+	3'UTR	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:14750C>T	uc010mgm.1	-	11					WASH5P_uc003zfr.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CTGGCTGTGTCCATGTCAGAG	0.622													5	6	---	---	---	---	PASS
PCSK5	5125	broad.mit.edu	37	9	78774010	78774010	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:78774010C>T	uc004ajz.2	+	12	2080	c.1542C>T	c.(1540-1542)ATC>ATT	p.I514I	PCSK5_uc004ajy.2_Silent_p.I514I|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	514	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GCATCACCATCACCCACCCCA	0.577													16	53	---	---	---	---	PASS
OR52J3	119679	broad.mit.edu	37	11	5068193	5068193	+	Silent	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:5068193T>C	uc010qyv.1	+	1	438	c.438T>C	c.(436-438)ATT>ATC	p.I146I		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGTGGGCATTAGCATGTGCA	0.473													19	57	---	---	---	---	PASS
ATG2A	23130	broad.mit.edu	37	11	64681821	64681821	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:64681821C>T	uc001obx.2	-	2	438	c.323G>A	c.(322-324)CGC>CAC	p.R108H	ATG2A_uc010rnt.1_Missense_Mutation_p.R108H	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	108							protein binding			ovary(1)|central_nervous_system(1)	2						TGGACCCCGGCGGGGCTGCAA	0.716													4	9	---	---	---	---	PASS
SYTL2	54843	broad.mit.edu	37	11	85428687	85428687	+	Intron	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:85428687C>T	uc010rth.1	-						SYTL2_uc010rtg.1_Intron|SYTL2_uc010rti.1_Intron|SYTL2_uc010rtj.1_Intron|SYTL2_uc001pav.2_5'Flank|SYTL2_uc010rte.1_Intron|SYTL2_uc001pax.2_Intron|SYTL2_uc001paz.2_Intron|SYTL2_uc001pba.2_Intron|SYTL2_uc001pay.2_Intron|SYTL2_uc001paw.2_Intron|SYTL2_uc009yvj.2_RNA|SYTL2_uc001pbd.2_Intron|SYTL2_uc001pbb.2_Intron|SYTL2_uc001pbc.2_Intron|SYTL2_uc010rtf.1_Intron	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g						intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		ATACATCTGACAGGTTTTCAT	0.358													11	26	---	---	---	---	PASS
CEP164	22897	broad.mit.edu	37	11	117263006	117263006	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:117263006C>T	uc001prc.2	+	18	2495	c.2348C>T	c.(2347-2349)GCC>GTC	p.A783V	CEP164_uc001prb.2_Missense_Mutation_p.A786V|CEP164_uc010rxk.1_Missense_Mutation_p.A757V|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.A216V	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	783	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		TCATTGGAGGCCAAGCACCGG	0.607													13	34	---	---	---	---	PASS
PRB1	5542	broad.mit.edu	37	12	11506352	11506352	+	Missense_Mutation	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:11506352G>T	uc001qzw.1	-	4	722	c.685C>A	c.(685-687)CAG>AAG	p.Q229K	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	290	12.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CCTTGGGGCTGGTTGCCTCCT	0.602													8	208	---	---	---	---	PASS
C12orf51	283450	broad.mit.edu	37	12	112605691	112605691	+	Missense_Mutation	SNP	A	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:112605691A>C	uc009zwc.2	-	64	10991	c.10973T>G	c.(10972-10974)GTG>GGG	p.V3658G		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTCCTTACACACCTGCCACAG	0.632													5	40	---	---	---	---	PASS
LCP1	3936	broad.mit.edu	37	13	46730641	46730641	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:46730641C>T	uc001vaz.3	-	5	549	c.423G>A	c.(421-423)CGG>CGA	p.R141R	LCP1_uc001vba.3_Silent_p.R141R	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	141	Actin-binding 1.|CH 1.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		GGATGACATGCCGACAATCAG	0.383			T	BCL6	NHL 								5	222	---	---	---	---	PASS
NEK5	341676	broad.mit.edu	37	13	52639390	52639390	+	3'UTR	SNP	G	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:52639390G>C	uc001vge.2	-	22						NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5								ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GTGGCATCCTGGATTTTTCCT	0.428													4	7	---	---	---	---	PASS
SLITRK5	26050	broad.mit.edu	37	13	88329824	88329824	+	Silent	SNP	A	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:88329824A>G	uc001vln.2	+	2	2400	c.2181A>G	c.(2179-2181)CCA>CCG	p.P727P	SLITRK5_uc010tic.1_Silent_p.P486P	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	727	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GCGGCCACCCACACGCGCACG	0.662													11	36	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	14	22251232	22251232	+	Intron	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:22251232T>C	uc010tmf.1	+											SubName: Full=Putative uncharacterized protein ENSP00000374943;																		CGGAGACCTGTCCTAATTATA	0.388													9	21	---	---	---	---	PASS
MPP5	64398	broad.mit.edu	37	14	67799567	67799567	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:67799567C>T	uc001xjc.2	+	15	2388	c.1922C>T	c.(1921-1923)ACG>ATG	p.T641M	MPP5_uc001xjd.2_Missense_Mutation_p.T607M|ATP6V1D_uc001xje.2_Intron	NM_022474	NP_071919	Q8N3R9	MPP5_HUMAN	membrane protein, palmitoylated 5	641	Guanylate kinase-like.				tight junction assembly	cytoplasm|endomembrane system|tight junction	protein domain specific binding			ovary(1)	1				all cancers(60;0.000388)|OV - Ovarian serous cystadenocarcinoma(108;0.00762)|BRCA - Breast invasive adenocarcinoma(234;0.0106)		TACTTTGATACGGCAATTGTG	0.403													4	74	---	---	---	---	PASS
PTPN21	11099	broad.mit.edu	37	14	88983493	88983493	+	Missense_Mutation	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:88983493T>C	uc001xwv.3	-	3	624	c.293A>G	c.(292-294)TAT>TGT	p.Y98C	PTPN21_uc010twc.1_5'UTR|PTPN21_uc010atf.1_Missense_Mutation_p.Y98C	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	98	FERM.					cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						CACTCCAAAATAGACGGTAGG	0.428													17	61	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	15	28948349	28948349	+	5'Flank	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:28948349T>C	uc001zcd.2	+											DQ593033																		CCACTGGCTCTCAGAAGGGGT	0.567													3	5	---	---	---	---	PASS
CHD9	80205	broad.mit.edu	37	16	53358659	53358659	+	Missense_Mutation	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:53358659T>C	uc002ehb.2	+	38	8710	c.8546T>C	c.(8545-8547)ATT>ACT	p.I2849T	CHD9_uc002egy.2_Missense_Mutation_p.I2833T|CHD9_uc002ehc.2_Missense_Mutation_p.I2834T|CHD9_uc002ehf.2_Missense_Mutation_p.I1947T|CHD9_uc010cbw.2_Missense_Mutation_p.I915T	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2849					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GATTCCAGAATTAAAGATCAG	0.393													7	33	---	---	---	---	PASS
CDH11	1009	broad.mit.edu	37	16	65025821	65025821	+	Missense_Mutation	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:65025821G>T	uc002eoi.2	-	6	1095	c.661C>A	c.(661-663)CTA>ATA	p.L221I	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.L221I|CDH11_uc010vin.1_Missense_Mutation_p.L95I	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	221	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		ATGTTGGGTAGGGCTGTTCTG	0.493			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			3	69	---	---	---	---	PASS
SMTNL2	342527	broad.mit.edu	37	17	4500589	4500589	+	Missense_Mutation	SNP	G	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:4500589G>C	uc002fyf.1	+	7	1297	c.1230G>C	c.(1228-1230)AAG>AAC	p.K410N	SMTNL2_uc002fye.2_Missense_Mutation_p.K266N	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	410	CH.										0				READ - Rectum adenocarcinoma(115;0.0325)		AGAGGCAGAAGAACTTCGAGC	0.622													21	61	---	---	---	---	PASS
ADORA2B	136	broad.mit.edu	37	17	15848766	15848766	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:15848766C>T	uc002gpd.1	+	1	536	c.204C>T	c.(202-204)AGC>AGT	p.S68S		NM_000676	NP_000667	P29275	AA2BR_HUMAN	adenosine A2b receptor	68	Extracellular (By similarity).				activation of MAPK activity|cellular defense response|excretion|JNK cascade	integral to plasma membrane				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0855)	Defibrotide(DB04932)|Enprofylline(DB00824)|Pegademase bovine(DB00061)|Theophylline(DB00277)	TCACCATCAGCCTGGGCTTCT	0.632													12	17	---	---	---	---	PASS
DDX42	11325	broad.mit.edu	37	17	61895551	61895551	+	Silent	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:61895551G>A	uc002jbu.2	+	19	2867	c.2610G>A	c.(2608-2610)CGG>CGA	p.R870R	DDX42_uc002jbv.2_Silent_p.R870R|DDX42_uc002jbx.2_Silent_p.R606R|DDX42_uc002jby.2_Silent_p.R416R|DDX42_uc010wps.1_Silent_p.R238R	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	870	Gly-rich.|His-rich.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						GCGCAGGCCGGCATGGGGAGA	0.562													4	137	---	---	---	---	PASS
MUC16	94025	broad.mit.edu	37	19	9046814	9046814	+	Missense_Mutation	SNP	A	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:9046814A>T	uc002mkp.2	-	5	35021	c.34817T>A	c.(34816-34818)ATG>AAG	p.M11606K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11608	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTGGTGACCATTGAGGGTGC	0.527													4	105	---	---	---	---	PASS
OR1I1	126370	broad.mit.edu	37	19	15198107	15198107	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:15198107C>T	uc010xoe.1	+	1	231	c.231C>T	c.(229-231)ACC>ACT	p.T77T		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						CCTCCACCACCGTCCCCAAGA	0.542													20	34	---	---	---	---	PASS
NR2F6	2063	broad.mit.edu	37	19	17346354	17346354	+	Silent	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:17346354G>A	uc002nfq.2	-	3	1016	c.894C>T	c.(892-894)GAC>GAT	p.D298D		NM_005234	NP_005225	P10588	NR2F6_HUMAN	nuclear receptor subfamily 2, group F, member 6	298	Ligand-binding (By similarity).				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding				0						ACTCGGCCGAGTCGACCTGCA	0.701													5	8	---	---	---	---	PASS
FFAR2	2867	broad.mit.edu	37	19	35941423	35941423	+	Silent	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:35941423C>T	uc002nzg.2	+	2	887	c.807C>T	c.(805-807)GAC>GAT	p.D269D	FFAR2_uc010eea.2_Silent_p.D269D	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	269	Helical; Name=7; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CCAGTCTGGACCCCCTGCTCT	0.582													43	95	---	---	---	---	PASS
IZUMO1	284359	broad.mit.edu	37	19	49246716	49246716	+	Missense_Mutation	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:49246716G>T	uc002pkj.2	-	6	1033	c.485C>A	c.(484-486)TCC>TAC	p.S162Y	RASIP1_uc002pki.2_5'Flank|IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	162	Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GCAATCGTAGGACTTTCGACA	0.562													9	26	---	---	---	---	PASS
CD33	945	broad.mit.edu	37	19	51728801	51728801	+	Missense_Mutation	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:51728801G>T	uc002pwa.2	+	2	405	c.365G>T	c.(364-366)AGA>ATA	p.R122I	CD33_uc010eos.1_Missense_Mutation_p.R122I|CD33_uc010eot.1_Intron|CD33_uc010eou.1_5'Flank	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	122	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CGGATGGAGAGAGGAAGTACC	0.522													21	56	---	---	---	---	PASS
C20orf112	140688	broad.mit.edu	37	20	31035602	31035602	+	Missense_Mutation	SNP	T	C	C			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:31035602T>C	uc002wxu.3	-	8	1265	c.1108A>G	c.(1108-1110)ATG>GTG	p.M370V	C20orf112_uc010gec.2_Missense_Mutation_p.M195V	NM_080616	NP_542183	Q96MY1	CT112_HUMAN	hypothetical protein LOC140688	370											0						CCGCCTTTCATGCTGAGGTCC	0.473													11	29	---	---	---	---	PASS
ZNFX1	57169	broad.mit.edu	37	20	47874193	47874193	+	Missense_Mutation	SNP	C	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:47874193C>G	uc002xui.2	-	8	2672	c.2425G>C	c.(2425-2427)GAA>CAA	p.E809Q		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	809							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			tcatccccttctgcctGGGCT	0.274													10	32	---	---	---	---	PASS
PRIC285	85441	broad.mit.edu	37	20	62193088	62193088	+	Silent	SNP	C	G	G			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:62193088C>G	uc002yfm.2	-	13	7594	c.6702G>C	c.(6700-6702)CTG>CTC	p.L2234L	PRIC285_uc002yfl.1_Silent_p.L1665L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2234					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CCATCCTTCTCAGGAGCAGTC	0.667													8	23	---	---	---	---	PASS
GCFC1	94104	broad.mit.edu	37	21	34110602	34110602	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr21:34110602C>T	uc002yqn.2	-	16	2553	c.2363G>A	c.(2362-2364)GGC>GAC	p.G788D	uc002yqk.2_RNA|GCFC1_uc002yql.2_Missense_Mutation_p.G297D|GCFC1_uc002yqm.2_Missense_Mutation_p.G282D|GCFC1_uc002yqo.2_RNA	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	788						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TGAGAAAATGCCATACCACTG	0.303													3	62	---	---	---	---	PASS
SON	6651	broad.mit.edu	37	21	34924766	34924766	+	Missense_Mutation	SNP	C	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr21:34924766C>A	uc002yse.1	+	3	3278	c.3229C>A	c.(3229-3231)CCA>ACA	p.P1077T	SON_uc002ysb.1_Missense_Mutation_p.P1077T|SON_uc002ysc.2_Missense_Mutation_p.P1077T|SON_uc002ysd.2_Missense_Mutation_p.P68T|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.P68T	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1077	14 X 6 AA repeats of [ED]-R-S-M-M-S.				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						CATGATGTCCCCAATGGCTGA	0.512													37	80	---	---	---	---	PASS
PI4KAP2	375133	broad.mit.edu	37	22	21838301	21838301	+	Missense_Mutation	SNP	C	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr22:21838301C>T	uc002zuv.3	-	5	2899	c.640G>A	c.(640-642)GTC>ATC	p.V214I	PI4KAP2_uc002zuw.2_RNA|PI4KAP2_uc011aid.1_RNA|PI4KAP2_uc011aie.1_Missense_Mutation_p.V214I|PI4KAP2_uc011aif.1_5'UTR|PI4KAP2_uc002zux.2_Missense_Mutation_p.V214I					SubName: Full=Putative uncharacterized protein PI4KA;												0						TACTTGATGACAGCCGACACG	0.343													6	26	---	---	---	---	PASS
SUSD2	56241	broad.mit.edu	37	22	24579610	24579610	+	Silent	SNP	G	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr22:24579610G>T	uc002zzn.1	+	3	479	c.435G>T	c.(433-435)CTG>CTT	p.L145L		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	145	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GCACCTGGCTGGCTGGTGAGC	0.642													21	31	---	---	---	---	PASS
CNKSR2	22866	broad.mit.edu	37	X	21450761	21450761	+	Missense_Mutation	SNP	C	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:21450761C>A	uc004czx.1	+	3	296	c.260C>A	c.(259-261)ACC>AAC	p.T87N	CNKSR2_uc004czw.2_Missense_Mutation_p.T87N|CNKSR2_uc011mjn.1_Missense_Mutation_p.T87N|CNKSR2_uc011mjo.1_Missense_Mutation_p.T87N	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	87	CRIC.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AATCTAAAAACCCTTTCTCAC	0.303													7	80	---	---	---	---	PASS
MTMR8	55613	broad.mit.edu	37	X	63488824	63488824	+	Missense_Mutation	SNP	G	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:63488824G>A	uc004dvs.2	-	14	1776	c.1708C>T	c.(1708-1710)CTT>TTT	p.L570F	MTMR8_uc011mou.1_Intron	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	570						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						ATAAAGCCAAGAGGATTGGTC	0.468													26	20	---	---	---	---	PASS
GBP1	2633	broad.mit.edu	37	1	89518865	89518866	+	3'UTR	INS	-	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:89518865_89518866insT	uc001dmx.2	-	11						NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,						interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		AATTTACAGTCTTTTTTTTTTT	0.317													4	2	---	---	---	---	
NBPF10	100132406	broad.mit.edu	37	1	146009232	146009233	+	Intron	INS	-	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:146009232_146009233insA	uc001emp.3	+							NM_017940	NP_060410	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC55672												0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AACTTGCTAAGAAAAAAAAAAA	0.490													4	2	---	---	---	---	
TMEM183A	92703	broad.mit.edu	37	1	202991831	202991831	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:202991831delA	uc001gyu.1	+						TMEM183A_uc001gyv.1_Intron|TMEM183A_uc001gyw.1_Intron|TMEM183A_uc001gyx.1_Intron|TMEM183A_uc001gyy.2_5'Flank	NM_001079809	NP_001073277	Q8IXX5	T183A_HUMAN	transmembrane protein 183B							integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.18)			gtcctttctcaaaaaaaaaaa	0.144													4	2	---	---	---	---	
TMEM63A	9725	broad.mit.edu	37	1	226061869	226061870	+	Intron	DEL	AC	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:226061869_226061870delAC	uc001hpm.1	-						TMEM63A_uc010pvi.1_Intron	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A							integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CATTCCAGGGacacacacacac	0.292													9	4	---	---	---	---	
LIN9	286826	broad.mit.edu	37	1	226475682	226475683	+	Intron	INS	-	T	T			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:226475682_226475683insT	uc001hqa.2	-						LIN9_uc001hqb.2_Intron|LIN9_uc001hqc.2_Intron|LIN9_uc009xel.1_Intron	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog						cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		TGATTATTGCCttttttttttt	0.139													4	2	---	---	---	---	
RYR2	6262	broad.mit.edu	37	1	237955697	237955698	+	Intron	DEL	GC	-	-	rs146588202	by1000genomes	TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:237955697_237955698delGC	uc001hyl.1	+						RYR2_uc010pyb.1_Intron	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor						cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			gtgtgtgtgtgcgtgtgtgtgt	0.109													7	4	---	---	---	---	
NEB	4703	broad.mit.edu	37	2	152524209	152524209	+	Intron	DEL	T	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:152524209delT	uc010fnx.2	-							NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3						muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		atctggctaattttttttttt	0.045													4	3	---	---	---	---	
GULP1	51454	broad.mit.edu	37	2	189342480	189342482	+	Intron	DEL	ACT	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:189342480_189342482delACT	uc010fru.2	+						GULP1_uc002uqc.3_Intron|GULP1_uc002uqd.2_Intron|GULP1_uc010zfw.1_Intron|GULP1_uc002uqe.2_Intron|GULP1_uc002uqf.2_Intron|GULP1_uc002uqg.2_Intron	NM_016315	NP_057399	Q9UBP9	GULP1_HUMAN	GULP, engulfment adaptor PTB domain containing						apoptosis|lipid transport|phagocytosis, engulfment	cytoplasm|intracellular membrane-bounded organelle	signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0423)|Epithelial(96;0.158)			ATTTTTTAAAACTTGGGAGTCAA	0.384													92	41	---	---	---	---	
MAP4	4134	broad.mit.edu	37	3	47956605	47956605	+	Intron	DEL	T	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:47956605delT	uc003csb.2	-						MAP4_uc003csc.3_Intron|MAP4_uc011bbf.1_Intron|MAP4_uc003csf.3_Intron	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1						negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		gttatgttacttttttttttt	0.020													6	4	---	---	---	---	
RNF123	63891	broad.mit.edu	37	3	49735798	49735798	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:49735798delA	uc003cxh.2	+						RNF123_uc010hky.1_5'Flank|RNF123_uc003cxi.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123							cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		ATATGCATCCAAGGCTGGTGA	0.552													8	5	---	---	---	---	
MFN1	55669	broad.mit.edu	37	3	179096023	179096023	+	Intron	DEL	T	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:179096023delT	uc003fjs.2	+						MFN1_uc010hxb.2_Intron|MFN1_uc003fjt.2_Intron|MFN1_uc010hxc.2_Intron	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1						mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			aaaaaaaaaGTCAAATTAAAA	0.119													4	2	---	---	---	---	
CYTL1	54360	broad.mit.edu	37	4	5020926	5020927	+	Intron	INS	-	TC	TC			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:5020926_5020927insTC	uc003gig.2	-							NM_018659	NP_061129	Q9NRR1	CYTL1_HUMAN	cytokine-like 1 precursor						signal transduction	extracellular space|soluble fraction	receptor binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		AAATATCCTTTTCTCTCTCTCT	0.406													4	2	---	---	---	---	
KLHL2	11275	broad.mit.edu	37	4	166239048	166239048	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:166239048delA	uc003irb.2	+	14	1939	c.1680delA	c.(1678-1680)GTAfs	p.V560fs	KLHL2_uc011cjm.1_Frame_Shift_Del_p.V564fs|KLHL2_uc003irc.2_Frame_Shift_Del_p.V472fs|KLHL2_uc010ira.2_Frame_Shift_Del_p.V213fs	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	560	Kelch 6.				intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		TGGCGTCAGTAGAATATTATA	0.378													102	52	---	---	---	---	
RGNEF	64283	broad.mit.edu	37	5	73169151	73169151	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:73169151delA	uc011csq.1	+						RGNEF_uc003kcx.2_Intron|RGNEF_uc010izf.2_Intron|RGNEF_uc011csr.1_Intron	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor						cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CAACAAGAGTAAAAAAAATGA	0.249													4	2	---	---	---	---	
SPINK5	11005	broad.mit.edu	37	5	147493803	147493804	+	Intron	INS	-	A	A	rs142874955		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:147493803_147493804insA	uc003lox.2	+						SPINK5_uc010jgs.1_Intron|SPINK5_uc010jgr.2_Intron|SPINK5_uc003low.2_Intron|SPINK5_uc003loy.2_Intron	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform						anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATAACTGCCAGAAAAAAAATTC	0.337													7	6	---	---	---	---	
IRF4	3662	broad.mit.edu	37	6	396779	396795	+	Intron	DEL	CTCCTGCACTCCTTTAA	-	-	rs113172745		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:396779_396795delCTCCTGCACTCCTTTAA	uc003msz.3	+						IRF4_uc010jne.1_Intron|IRF4_uc003mta.3_Intron|IRF4_uc003mtb.3_Intron|IRF4_uc003mtc.1_5'Flank	NM_002460	NP_002451	Q15306	IRF4_HUMAN	interferon regulatory factor 4						interferon-gamma-mediated signaling pathway|positive regulation of interleukin-10 biosynthetic process|positive regulation of interleukin-13 biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of transcription, DNA-dependent|regulation of T-helper cell differentiation|T cell activation|type I interferon-mediated signaling pathway	cytoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1		Breast(5;0.0155)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.03)|BRCA - Breast invasive adenocarcinoma(62;0.0702)		ATCTCAGCCTCTCCTGCACTCCTTTAACCCCGTCTCG	0.553			T	IGH@	MM 								6	3	---	---	---	---	
PHF1	5252	broad.mit.edu	37	6	33379942	33379942	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:33379942delA	uc003oeh.2	+						PHF1_uc011drh.1_Intron|PHF1_uc003oei.2_Intron|PHF1_uc010jux.2_Intron	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b						chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				ccatctcaggaaaaaaaaaaa	0.189													4	2	---	---	---	---	
MAPK13	5603	broad.mit.edu	37	6	36098497	36098498	+	Intron	INS	-	GGGGGGC	GGGGGGC	rs146539855	by1000genomes	TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:36098497_36098498insGGGGGGC	uc003ols.2	+						MAPK13_uc003olt.2_Intron	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13						cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CCTgggccgctggggggcgggg	0.599													8	4	---	---	---	---	
CGA	1081	broad.mit.edu	37	6	87797954	87797956	+	Intron	DEL	AAC	-	-	rs67709858		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:87797954_87797956delAAC	uc003plj.1	-							NM_000735	NP_000726	P01215	GLHA_HUMAN	glycoprotein hormones, alpha polypeptide						hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity			ovary(1)	1		all_cancers(76;5.98e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000102)		BRCA - Breast invasive adenocarcinoma(108;0.0484)		AAAAAAAAAAAACAAAAAACAGT	0.369													4	2	---	---	---	---	
ECHDC1	55862	broad.mit.edu	37	6	127652297	127652297	+	Intron	DEL	T	-	-	rs66884305		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:127652297delT	uc003qax.2	-						ECHDC1_uc003qaz.3_Intron|ECHDC1_uc010key.2_Intron|ECHDC1_uc003qay.3_Intron|ECHDC1_uc010kez.2_Intron|ECHDC1_uc010kex.2_5'Flank	NM_001139510	NP_001132982	Q9NTX5	ECHD1_HUMAN	enoyl Coenzyme A hydratase domain containing 1								catalytic activity				0				GBM - Glioblastoma multiforme(226;0.0423)|all cancers(137;0.156)		TCCCCAtttcttttttttttt	0.189													3	3	---	---	---	---	
SLC18A2	6571	broad.mit.edu	37	10	119013080	119013080	+	Intron	DEL	T	-	-	rs2256299		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr10:119013080delT	uc001ldd.1	+						SLC18A2_uc009xyy.1_Intron	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),						neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	GCGGGGGGggtcgtggttggc	0.284													10	5	---	---	---	---	
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5655761	5655762	+	Intron	DEL	AT	-	-	rs111673662		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:5655761_5655762delAT	uc001mbf.2	+						HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Intron|TRIM34_uc009yeq.2_Intron|TRIM34_uc001mbi.2_Intron|TRIM34_uc001mbj.2_Intron	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite							intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		acacacacacatatatatatat	0.228													4	3	---	---	---	---	
ZW10	9183	broad.mit.edu	37	11	113621741	113621742	+	Intron	INS	-	T	T	rs34836136		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:113621741_113621742insT	uc001poe.2	-						ZW10_uc009yyv.2_Intron	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10						cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		actgcaaatacttttttttTTT	0.149													4	2	---	---	---	---	
LRFN5	145581	broad.mit.edu	37	14	42212170	42212173	+	Intron	DEL	AGGC	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:42212170_42212173delAGGC	uc001wvm.2	+						LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III							integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CTTAGAGTGAAGGCAGGAAGGAAA	0.505										HNSCC(30;0.082)			4	2	---	---	---	---	
YLPM1	56252	broad.mit.edu	37	14	75287731	75287731	+	Intron	DEL	T	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:75287731delT	uc001xqj.3	+						YLPM1_uc001xql.3_Intron|YLPM1_uc001xqm.1_Intron	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		TAACTCAGTCTTTTTTTTTTT	0.353													3	3	---	---	---	---	
CEP152	22995	broad.mit.edu	37	15	49088108	49088109	+	Intron	INS	-	A	A			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:49088108_49088109insA	uc001zwy.2	-						CEP152_uc001zwz.2_Intron|CEP152_uc001zxa.1_Intron	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa						centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		ttgtcatacttaaaaaataata	0.040													8	7	---	---	---	---	
FSD2	123722	broad.mit.edu	37	15	83438318	83438318	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:83438318delA	uc002bjd.2	-						FSD2_uc010uol.1_Intron|FSD2_uc010uom.1_Intron	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing											central_nervous_system(1)	1						gactcatctcaaaaaaaaaaa	0.149													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	16	28649818	28649818	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:28649818delA	uc010vct.1	-											RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		GAGTGCAGACAAGATGGGGCC	0.582													5	3	---	---	---	---	
SIGLEC5	8778	broad.mit.edu	37	19	52115343	52115344	+	3'UTR	INS	-	TCATCTGTTTTCTTTCTGC	TCATCTGTTTTCTTTCTGC	rs143349422	by1000genomes	TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:52115343_52115344insTCATCTGTTTTCTTTCTGC	uc002pxe.2	-	9						NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor						cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		ctctaattccaTCTGCTTGGAG	0.248													6	3	---	---	---	---	
VSTM2L	128434	broad.mit.edu	37	20	36572311	36572311	+	Intron	DEL	C	-	-	rs33961791		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:36572311delC	uc002xhk.3	+							NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like											ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				GATCTTGGGACCCCCCCCCCC	0.418													4	2	---	---	---	---	
PHACTR3	116154	broad.mit.edu	37	20	58342160	58342160	+	Intron	DEL	A	-	-			TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:58342160delA	uc002yau.2	+						PHACTR3_uc002yat.2_Intron|PHACTR3_uc010zzw.1_Intron|PHACTR3_uc002yav.2_Intron|PHACTR3_uc002yaw.2_Intron|PHACTR3_uc002yax.2_Intron	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1							nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CCATCCCACCAAACCCTCTTG	0.483													3	4	---	---	---	---	
DOCK11	139818	broad.mit.edu	37	X	117761299	117761299	+	Intron	DEL	T	-	-	rs78788801		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:117761299delT	uc004eqp.2	+						DOCK11_uc004eqq.2_Intron	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11						blood coagulation	cytosol	GTP binding			ovary(3)	3						TGCTAGTAGCTTTTTTTTTTT	0.318													4	3	---	---	---	---	
