Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
TMTC1	83857	broad.mit.edu	37	12	29665042	29665042	+	Silent	SNP	C	A	A			TCGA-34-5241-01A-01D-1441-08	TCGA-34-5241-10A-01D-1441-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bcdbc37-cde8-47df-9184-621b2b47da5b	bd4b1124-3d34-4d8b-ab22-29c938c7ef70	g.chr12:29665042C>A	uc001rjb.2	-	17	2592	c.2118G>T	c.(2116-2118)GTG>GTT	p.V706V	TMTC1_uc001riz.2_Silent_p.V463V|TMTC1_uc001rja.2_Silent_p.V550V|TMTC1_uc001riy.2_Silent_p.V159V	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	814	TPR 9.					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					GTTGCACAGCCACTCTATAGC	0.443													55	139	---	---	---	---	PASS
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	-	-	rs35266724		TCGA-34-5241-01A-01D-1441-08	TCGA-34-5241-10A-01D-1441-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bcdbc37-cde8-47df-9184-621b2b47da5b	bd4b1124-3d34-4d8b-ab22-29c938c7ef70	g.chr9:139277995_139277997delGCT	uc004chh.2	-	15	1633_1635	c.1624_1626delAGC	c.(1624-1626)AGCdel	p.S542del		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	542					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGTCCTCCTCgctgctgctgctg	0.473													8	4	---	---	---	---	
ZNF268	10795	broad.mit.edu	37	12	133779994	133779994	+	Frame_Shift_Del	DEL	C	-	-			TCGA-34-5241-01A-01D-1441-08	TCGA-34-5241-10A-01D-1441-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bcdbc37-cde8-47df-9184-621b2b47da5b	bd4b1124-3d34-4d8b-ab22-29c938c7ef70	g.chr12:133779994delC	uc010tcf.1	+	6	2052	c.1722delC	c.(1720-1722)CACfs	p.H574fs	ZNF268_uc010tbv.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tbw.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tbx.1_Frame_Shift_Del_p.H434fs|ZNF268_uc010tby.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tbz.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tca.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tcb.1_Frame_Shift_Del_p.H434fs|ZNF268_uc010tcc.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tcd.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tce.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tcg.1_Frame_Shift_Del_p.H413fs|ZNF268_uc010tch.1_Frame_Shift_Del_p.H574fs	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	574	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		TTATTTCACACCAGAGAACTC	0.433													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	15	82620383	82620384	+	RNA	INS	-	ACCCAGG	ACCCAGG			TCGA-34-5241-01A-01D-1441-08	TCGA-34-5241-10A-01D-1441-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bcdbc37-cde8-47df-9184-621b2b47da5b	bd4b1124-3d34-4d8b-ab22-29c938c7ef70	g.chr15:82620383_82620384insACCCAGG	uc010bls.1	+	1		c.476_477insACCCAGG								Homo sapiens mRNA for FLJ00317 protein.																		GCCTGCCCTGAACCCAGGACCC	0.663													4	4	---	---	---	---	
ZNF598	90850	broad.mit.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	TCC	TCC	rs141374045	by1000genomes	TCGA-34-5241-01A-01D-1441-08	TCGA-34-5241-10A-01D-1441-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bcdbc37-cde8-47df-9184-621b2b47da5b	bd4b1124-3d34-4d8b-ab22-29c938c7ef70	g.chr16:2049882_2049883insTCC	uc002cof.1	-	11	1682_1683	c.1667_1668insGGA	c.(1666-1668)GAC>GAGGAC	p.555_556insE	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	555_556						intracellular	zinc ion binding			lung(1)|breast(1)	2						CCGGGCCGCCGTCCTCCTCCTC	0.703													4	5	---	---	---	---	
