Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
RAP1GAP2	23108	genome.wustl.edu	36	17	2876141	2876141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	2876141	2876141	RAP1GAP2	17	C	C	T	23
TP53	7157	genome.wustl.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	A	A	rs28934573	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7518284	7518284	TP53	17	G	A	A	41
FARSA	2193	genome.wustl.edu	36	19	12902497	12902497	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12902497	12902497	FARSA	19	G	G	A	39
FAR1	84188	genome.wustl.edu	36	11	13705692	13705692	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	13705692	13705692	FAR1	11	A	T	T	12
NCAM2	4685	genome.wustl.edu	36	21	21574817	21574817	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21574817	21574817	NCAM2	21	G	G	C	41
GPR158	57512	genome.wustl.edu	36	10	25926869	25926869	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	25926869	25926869	GPR158	10	T	T	C	54
ANKS1A	23294	genome.wustl.edu	36	6	35093620	35093620	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	35093620	35093620	ANKS1A	6	C	C	T	23
TTC3	7267	genome.wustl.edu	36	21	37418871	37418871	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	37418871	37418871	TTC3	21	A	A	G	4
CBX7	23492	genome.wustl.edu	36	22	37859983	37859983	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	37859983	37859983	CBX7	22	G	T	T	39
PRICKLE1	144165	genome.wustl.edu	36	12	41144824	41144824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41144824	41144824	PRICKLE1	12	G	G	C	35
KIAA1644	85352	genome.wustl.edu	36	22	43024013	43024013	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	43024013	43024013	KIAA1644	22	C	C	T	23
NNT	23530	genome.wustl.edu	36	5	43691842	43691842	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	43691842	43691842	NNT	5	G	G	A	34
KRT79	338785	genome.wustl.edu	36	12	51504354	51504354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51504354	51504354	KRT79	12	G	G	T	48
RB1CC1	9821	genome.wustl.edu	36	8	53749013	53749013	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	53749013	53749013	RB1CC1	8	T	T	C	50
PCDH15	65217	genome.wustl.edu	36	10	55286974	55286974	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55286974	55286974	PCDH15	10	G	G	T	36
LRIG3	121227	genome.wustl.edu	36	12	57560777	57560777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	57560777	57560777	LRIG3	12	G	G	C	35
TTC9C	283237	genome.wustl.edu	36	11	62253040	62253040	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	62253040	62253040	TTC9C	11	G	G	T	40
PLEK2	26499	genome.wustl.edu	36	14	66931898	66931898	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	66931898	66931898	PLEK2	14	G	G	A	45
NUMB	8650	genome.wustl.edu	36	14	72813133	72813133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	72813133	72813133	NUMB	14	G	G	A	34
CDH13	1012	genome.wustl.edu	36	16	81808467	81808467	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	81808467	81808467	CDH13	16	G	G	T	35
CDH13	1012	genome.wustl.edu	36	16	81808476	81808476	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	81808476	81808476	CDH13	16	G	G	T	35
CADM2	253559	genome.wustl.edu	36	3	85858344	85858344	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	85858344	85858344	CADM2	3	A	A	G	2
VWA3B	200403	genome.wustl.edu	36	2	98233285	98233285	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	98233285	98233285	VWA3B	2	A	A	G	5
MFSD9	84804	genome.wustl.edu	36	2	102701787	102701787	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	102701787	102701787	MFSD9	2	G	A	A	38
DAO	1610	genome.wustl.edu	36	12	107805409	107805409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	107805409	107805409	DAO	12	C	C	T	19
SOBP	55084	genome.wustl.edu	36	6	108061758	108061758	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	108061758	108061758	SOBP	6	C	C	A	20
CAMK2D	817	genome.wustl.edu	36	4	114600794	114600794	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	114600794	114600794	CAMK2D	4	A	A	C	1
MCM9	254394	genome.wustl.edu	36	6	119280502	119280502	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	119280502	119280502	MCM9	6	G	G	A	45
NUP188	23511	genome.wustl.edu	36	9	130770618	130770618	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	130770618	130770618	NUP188	9	G	G	A	36
PPP2CA	5515	genome.wustl.edu	36	5	133565562	133565562	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	133565562	133565562	PPP2CA	5	C	C	G	32
KIAA0649	9858	genome.wustl.edu	36	9	137519770	137519770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	137519770	137519770	KIAA0649	9	C	C	T	19
PCDHB9	56127	genome.wustl.edu	36	5	140549022	140549022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140549022	140549022	PCDHB9	5	G	G	A	34
CYP11B1	1584	genome.wustl.edu	36	8	143956176	143956176	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	T	T	T	C	T	C	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	143956176	143956176	CYP11B1	8	T	T	C	53
LRBA	987	genome.wustl.edu	36	4	151612283	151612283	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	151612283	151612283	LRBA	4	A	A	T	8
HMCN1	83872	genome.wustl.edu	36	1	184258800	184258800	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	184258800	184258800	HMCN1	1	C	C	T	31
PGAP1	80055	genome.wustl.edu	36	2	197489528	197489528	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	197489528	197489528	PGAP1	2	T	T	C	55
FAM117B	150864	genome.wustl.edu	36	2	203338550	203338550	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	203338550	203338550	FAM117B	2	A	A	T	5
SLC18A1	6570	genome.wustl.edu	36	8	20082690	20082691	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1349-01	TCGA-04-1349-11	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	20082690	20082691	SLC18A1	8	-	-	T	21
PADI2	11240	genome.wustl.edu	36	1	17291556	17291556	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-04-1349-01	TCGA-04-1349-11	C	C	C	T	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	17291556	17291556	PADI2	1	C	C	T	23
CYP21A2	1589	genome.wustl.edu	36	6	32114194	32114196	+	In_Frame_Del	DEL	CTG	CTG	-		Unknown	TCGA-04-1349-01	TCGA-04-1349-11	CTG	CTG	CTG	-	CTG	CTG	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	32114194	32114196	CYP21A2	6	CTG	CTG	-	24
