Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ZMYM4	9202	broad.mit.edu	36	1	35625678	35625678	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35625678	35625678	ZMYM4	1	G	G	A	45
TIE1	7075	broad.mit.edu	36	1	43545181	43545181	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43545181	43545181	TIE1	1	A	A	T	11
CYP4A11	1579	broad.mit.edu	36	1	47175040	47175040	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47175040	47175040	CYP4A11	1	C	C	G	25
USP24	23358	broad.mit.edu	36	1	55375897	55375897	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55375897	55375897	USP24	1	T	T	C	62
KANK4	163782	broad.mit.edu	36	1	62513112	62513112	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	62513112	62513112	KANK4	1	T	T	C	55
AP4B1	10717	broad.mit.edu	36	1	114240158	114240158	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	114240158	114240158	AP4B1	1	C	C	A	22
C1orf9	51430	broad.mit.edu	36	1	170845647	170845647	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	170845647	170845647	C1orf9	1	A	A	G	15
KIAA1614	57710	broad.mit.edu	36	1	179180170	179180170	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179180170	179180170	KIAA1614	1	G	G	T	39
C10orf71	118461	broad.mit.edu	36	10	50200965	50200965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50200965	50200965	C10orf71	10	G	G	A	33
KIAA0913	23053	broad.mit.edu	36	10	75226634	75226634	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75226634	75226634	KIAA0913	10	A	A	T	11
SORCS3	22986	broad.mit.edu	36	10	107012096	107012096	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107012096	107012096	SORCS3	10	A	A	T	2
PRLHR	2834	broad.mit.edu	36	10	120343884	120343884	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120343884	120343884	PRLHR	10	G	G	T	42
C10orf46	143384	broad.mit.edu	36	10	120504057	120504057	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120504057	120504057	C10orf46	10	G	G	C	43
FAM53B	9679	broad.mit.edu	36	10	126360325	126360325	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	126360325	126360325	FAM53B	10	T	T	G	59
PSMD13	5719	broad.mit.edu	36	11	237370	237370	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	237370	237370	PSMD13	11	C	C	G	29
OR52A4	390053	broad.mit.edu	36	11	5099082	5099082	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5099082	5099082	OR52A4	11	G	G	C	42
SLC35C1	55343	broad.mit.edu	36	11	45784160	45784160	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45784160	45784160	SLC35C1	11	T	T	G	56
OR4A47	403253	broad.mit.edu	36	11	48467462	48467462	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48467462	48467462	OR4A47	11	C	C	T	22
C11orf57	55216	broad.mit.edu	36	11	111458848	111458848	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111458848	111458848	C11orf57	11	G	G	A	38
FAM55D	54827	broad.mit.edu	36	11	113958227	113958227	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113958227	113958227	FAM55D	11	A	A	G	3
CHD4	1108	broad.mit.edu	36	12	6577366	6577366	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6577366	6577366	CHD4	12	C	C	T	22
TAS2R46	259292	broad.mit.edu	36	12	11105796	11105796	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11105796	11105796	TAS2R46	12	T	T	C	56
SOX5	6660	broad.mit.edu	36	12	23648643	23648643	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23648643	23648643	SOX5	12	G	G	A	33
ALG10B	144245	broad.mit.edu	36	12	37000505	37000505	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37000505	37000505	ALG10B	12	G	G	T	33
POU6F1	5463	broad.mit.edu	36	12	49870461	49870461	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49870461	49870461	POU6F1	12	C	C	A	26
SLC4A8	9498	broad.mit.edu	36	12	50154489	50154489	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50154489	50154489	SLC4A8	12	G	G	T	45
ZNF385A	25946	broad.mit.edu	36	12	53051593	53051593	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53051593	53051593	ZNF385A	12	G	G	A	38
TAC3	6866	broad.mit.edu	36	12	55693716	55693716	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55693716	55693716	TAC3	12	G	G	T	41
LRP1	4035	broad.mit.edu	36	12	55874041	55874041	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55874041	55874041	LRP1	12	G	G	A	38
TRPV4	59341	broad.mit.edu	36	12	108725281	108725281	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	108725281	108725281	TRPV4	12	T	T	A	63
ACAD10	80724	broad.mit.edu	36	12	110631810	110631810	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110631810	110631810	ACAD10	12	T	T	G	64
TM9SF2	9375	broad.mit.edu	36	13	99005865	99005865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	99005865	99005865	TM9SF2	13	C	C	T	25
C14orf181	400223	broad.mit.edu	36	14	68332643	68332643	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	68332643	68332643	C14orf181	14	G	G	C	47
PNMA1	9240	broad.mit.edu	36	14	73249158	73249158	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73249158	73249158	PNMA1	14	G	G	T	34
PTPN21	11099	broad.mit.edu	36	14	88016272	88016272	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88016272	88016272	PTPN21	14	G	G	T	35
DISP2	85455	broad.mit.edu	36	15	38448441	38448441	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38448441	38448441	DISP2	15	T	T	C	63
LDHAL6B	92483	broad.mit.edu	36	15	57287097	57287097	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	57287097	57287097	LDHAL6B	15	G	G	C	45
LCTL	197021	broad.mit.edu	36	15	64637123	64637123	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64637123	64637123	LCTL	15	C	C	T	30
HYDIN	54768	broad.mit.edu	36	16	69583524	69583524	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	69583524	69583524	HYDIN	16	T	T	C	63
CHST6	4166	broad.mit.edu	36	16	74070482	74070482	+	Missense_Mutation	SNP	T	T	A	rs72547540	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74070482	74070482	CHST6	16	T	T	A	59
SPNS3	201305	broad.mit.edu	36	17	4284121	4284122	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	4284121	4284122	SPNS3	17	GG	GG	TT	47
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	G	A	39
GGNBP2	79893	broad.mit.edu	36	17	31987262	31987262	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31987262	31987262	GGNBP2	17	A	A	T	3
NDC80	10403	broad.mit.edu	36	18	2598740	2598740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	2598740	2598740	NDC80	18	G	G	A	36
EPB41L3	23136	broad.mit.edu	36	18	5387143	5387143	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	5387143	5387143	EPB41L3	18	T	T	C	58
LAMA3	3909	broad.mit.edu	36	18	19739528	19739528	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	19739528	19739528	LAMA3	18	T	T	A	60
TRAPPC8	22878	broad.mit.edu	36	18	27686579	27686579	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27686579	27686579	TRAPPC8	18	G	G	C	46
FBXO15	201456	broad.mit.edu	36	18	69944263	69944263	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69944263	69944263	FBXO15	18	G	G	C	33
DIRAS1	148252	broad.mit.edu	36	19	2668666	2668666	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2668666	2668666	DIRAS1	19	C	C	T	18
TNFSF9	8744	broad.mit.edu	36	19	6485682	6485682	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6485682	6485682	TNFSF9	19	C	C	G	24
RAB11B	9230	broad.mit.edu	36	19	8373134	8373134	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8373134	8373134	RAB11B	19	T	T	C	59
MUC16	94025	broad.mit.edu	36	19	8872463	8872463	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	8872463	8872463	MUC16	19	C	C	T	30
RDH8	50700	broad.mit.edu	36	19	9985252	9985252	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9985252	9985252	RDH8	19	C	C	G	21
PDCD2L	84306	broad.mit.edu	36	19	39592050	39592050	+	Missense_Mutation	SNP	C	C	G	rs61740326	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39592050	39592050	PDCD2L	19	C	C	G	31
NLRP5	126206	broad.mit.edu	36	19	61261588	61261588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	61261588	61261588	NLRP5	19	G	G	T	43
TTC15	51112	broad.mit.edu	36	2	3370557	3370557	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	3370557	3370557	TTC15	2	G	G	A	39
LCLAT1	253558	broad.mit.edu	36	2	30536005	30536005	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	30536005	30536005	LCLAT1	2	T	T	C	52
SNRNP200	23020	broad.mit.edu	36	2	96328807	96328807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	96328807	96328807	SNRNP200	2	G	G	A	44
SEMA4C	54910	broad.mit.edu	36	2	96890669	96890669	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	96890669	96890669	SEMA4C	2	G	G	C	44
PLEKHB2	55041	broad.mit.edu	36	2	131600758	131600758	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131600758	131600758	PLEKHB2	2	C	C	G	20
UBR3	130507	broad.mit.edu	36	2	170580092	170580092	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	170580092	170580092	UBR3	2	G	G	T	46
SCRN3	79634	broad.mit.edu	36	2	174977289	174977289	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	174977289	174977289	SCRN3	2	G	G	C	35
FAM171B	165215	broad.mit.edu	36	2	187267222	187267222	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	187267222	187267222	FAM171B	2	T	T	G	58
MDH1B	130752	broad.mit.edu	36	2	207330303	207330303	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	207330303	207330303	MDH1B	2	C	C	G	20
FASTKD2	22868	broad.mit.edu	36	2	207344916	207344916	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	207344916	207344916	FASTKD2	2	G	G	A	48
DNER	92737	broad.mit.edu	36	2	229939884	229939884	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	229939884	229939884	DNER	2	C	C	T	27
TRIP12	9320	broad.mit.edu	36	2	230366008	230366008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	230366008	230366008	TRIP12	2	G	G	C	46
RBM44	375316	broad.mit.edu	36	2	238397705	238397705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	238397705	238397705	RBM44	2	T	T	C	55
GGT7	2686	broad.mit.edu	36	20	32905997	32905997	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	32905997	32905997	GGT7	20	G	G	A	45
FAM83C	128876	broad.mit.edu	36	20	33337974	33337974	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33337974	33337974	FAM83C	20	G	G	T	43
EYA2	2139	broad.mit.edu	36	20	45159136	45159136	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	45159136	45159136	EYA2	20	G	G	C	48
SPATA2	9825	broad.mit.edu	36	20	47955616	47955616	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47955616	47955616	SPATA2	20	T	T	G	63
DIDO1	11083	broad.mit.edu	36	20	60984142	60984143	+	Missense_Mutation	DNP	TT	TT	GC	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	60984142	60984143	DIDO1	20	TT	TT	GC	60
TMPRSS15	5651	broad.mit.edu	36	21	18697686	18697686	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	18697686	18697686	TMPRSS15	21	G	G	T	48
AGPAT3	56894	broad.mit.edu	36	21	44213437	44213437	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44213437	44213437	AGPAT3	21	T	T	A	58
ZNF74	7625	broad.mit.edu	36	22	19089703	19089703	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19089703	19089703	ZNF74	22	G	G	A	42
WNT7B	7477	broad.mit.edu	36	22	44697494	44697494	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44697494	44697494	WNT7B	22	G	G	T	44
XPC	7508	broad.mit.edu	36	3	14165214	14165214	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14165214	14165214	XPC	3	C	C	G	21
CCDC13	152206	broad.mit.edu	36	3	42774686	42774686	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42774686	42774686	CCDC13	3	C	C	A	24
ITIH1	3697	broad.mit.edu	36	3	52797288	52797288	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52797288	52797288	ITIH1	3	T	T	A	59
ITIH3	3699	broad.mit.edu	36	3	52803899	52803899	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52803899	52803899	ITIH3	3	C	C	T	28
OR5H1	26341	broad.mit.edu	36	3	99335088	99335088	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	99335088	99335088	OR5H1	3	A	A	T	4
UMPS	7372	broad.mit.edu	36	3	125939494	125939494	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	125939494	125939494	UMPS	3	C	C	G	26
C3orf25	90288	broad.mit.edu	36	3	130612864	130612864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130612864	130612864	C3orf25	3	C	C	T	32
IFT122	55764	broad.mit.edu	36	3	130701528	130701528	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130701528	130701528	IFT122	3	G	G	T	40
SLC33A1	9197	broad.mit.edu	36	3	157043032	157043032	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	157043032	157043032	SLC33A1	3	G	G	A	40
LRRC33	375387	broad.mit.edu	36	3	197872846	197872846	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	197872846	197872846	LRRC33	3	G	G	T	42
TBC1D1	23216	broad.mit.edu	36	4	37692887	37692887	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37692887	37692887	TBC1D1	4	C	C	T	32
TBCKL	93627	broad.mit.edu	36	4	107353390	107353390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107353390	107353390	TBCKL	4	C	C	G	20
KIAA1109	84162	broad.mit.edu	36	4	123490564	123490564	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	123490564	123490564	KIAA1109	4	A	A	G	4
RWDD4A	201965	broad.mit.edu	36	4	184809194	184809194	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	184809194	184809194	RWDD4A	4	C	C	A	17
CARD6	84674	broad.mit.edu	36	5	40879379	40879379	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40879379	40879379	CARD6	5	G	G	T	48
STARD4	134429	broad.mit.edu	36	5	110865598	110865598	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110865598	110865598	STARD4	5	G	G	T	34
ALDH7A1	501	broad.mit.edu	36	5	125915628	125915628	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125915628	125915628	ALDH7A1	5	T	T	C	49
PCDHA2	56146	broad.mit.edu	36	5	140155165	140155165	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140155165	140155165	PCDHA2	5	A	A	G	4
PCDHB6	56130	broad.mit.edu	36	5	140511666	140511666	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140511666	140511666	PCDHB6	5	G	G	A	47
PCDHB16	57717	broad.mit.edu	36	5	140542871	140542872	+	Missense_Mutation	DNP	TT	TT	GA	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	140542871	140542872	PCDHB16	5	TT	TT	GA	52
NSD1	64324	broad.mit.edu	36	5	176654234	176654234	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	176654234	176654234	NSD1	5	C	C	G	24
CDKAL1	54901	broad.mit.edu	36	6	21173343	21173343	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21173343	21173343	CDKAL1	6	G	G	C	48
HIST1H3G	8355	broad.mit.edu	36	6	26379451	26379451	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	26379451	26379451	HIST1H3G	6	C	C	T	21
DHX16	8449	broad.mit.edu	36	6	30740925	30740925	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30740925	30740925	DHX16	6	C	C	T	26
CLIC1	1192	broad.mit.edu	36	6	31812045	31812045	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31812045	31812045	CLIC1	6	T	T	C	60
FAM83B	222584	broad.mit.edu	36	6	54912958	54912958	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54912958	54912958	FAM83B	6	T	T	C	49
FAM83B	222584	broad.mit.edu	36	6	54914197	54914197	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54914197	54914197	FAM83B	6	A	A	G	3
IBTK	25998	broad.mit.edu	36	6	82981010	82981010	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	82981010	82981010	IBTK	6	C	C	A	21
TPBG	7162	broad.mit.edu	36	6	83131742	83131742	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	83131742	83131742	TPBG	6	G	G	C	38
ZNF292	23036	broad.mit.edu	36	6	88021737	88021737	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	88021737	88021737	ZNF292	6	A	A	G	14
CYCS	54205	broad.mit.edu	36	7	25129902	25129902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	25129902	25129902	CYCS	7	C	C	T	32
EPDR1	54749	broad.mit.edu	36	7	37927045	37927045	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37927045	37927045	EPDR1	7	G	G	C	39
URGCP	55665	broad.mit.edu	36	7	43885175	43885175	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43885175	43885175	URGCP	7	C	C	T	19
TRIM50	135892	broad.mit.edu	36	7	72365147	72365147	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72365147	72365147	TRIM50	7	C	C	G	24
PMPCB	9512	broad.mit.edu	36	7	102725215	102725215	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102725215	102725215	PMPCB	7	C	C	G	32
NRCAM	4897	broad.mit.edu	36	7	107605735	107605735	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	107605735	107605735	NRCAM	7	C	C	T	21
PTPRZ1	5803	broad.mit.edu	36	7	121437739	121437739	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121437739	121437739	PTPRZ1	7	A	A	T	4
PARP12	64761	broad.mit.edu	36	7	139372502	139372502	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	139372502	139372502	PARP12	7	G	G	A	38
OR2A5	393046	broad.mit.edu	36	7	143378970	143378970	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	143378970	143378970	OR2A5	7	C	C	T	30
RP1	6101	broad.mit.edu	36	8	55702786	55702786	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55702786	55702786	RP1	8	T	T	A	57
CPA6	57094	broad.mit.edu	36	8	68584313	68584313	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	68584313	68584313	CPA6	8	A	A	C	4
VPS13B	157680	broad.mit.edu	36	8	100935306	100935306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	100935306	100935306	VPS13B	8	C	C	T	31
TG	7038	broad.mit.edu	36	8	133969910	133969910	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	133969910	133969910	TG	8	T	T	C	52
FAM135B	51059	broad.mit.edu	36	8	139449375	139449375	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	139449375	139449375	FAM135B	8	C	C	A	18
SLC45A4	57210	broad.mit.edu	36	8	142297957	142297957	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	142297957	142297957	SLC45A4	8	G	G	C	42
ZNF250	58500	broad.mit.edu	36	8	146078081	146078081	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146078081	146078081	ZNF250	8	A	A	C	11
RUSC2	9853	broad.mit.edu	36	9	35550620	35550620	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35550620	35550620	RUSC2	9	G	G	C	46
SMC2	10592	broad.mit.edu	36	9	105936623	105936623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	105936623	105936623	SMC2	9	T	T	A	60
FRMPD4	9758	broad.mit.edu	36	X	12644682	12644682	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	12644682	12644682	FRMPD4	23	C	C	T	27
ATP11C	286410	broad.mit.edu	36	X	138641482	138641482	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	138641482	138641482	ATP11C	23	C	C	A	17
RERE	473	broad.mit.edu	36	1	8342455	8342456	+	In_Frame_Ins	INS	-	CTCCTT	-	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Ins	INS	8342455	8342456	RERE	1	-	CTCCTT	-	38
TRA2B	6434	broad.mit.edu	36	3	187124302	187124302	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	187124302	187124302	TRA2B	3	A	-	A	5
PDE6B	5158	broad.mit.edu	36	4	650316	650322	+	Splice_Site_Del	DEL	CCAGCCT	-	CCAGCCT	novel	Unknown	TCGA-24-1422-01	TCGA-24-1422-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	650316	650322	PDE6B	4	CCAGCCT	-	CCAGCCT	18
