Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52610548	52610548	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8805663	8805663	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8862172	8862172	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107560864	107560864	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2334331	2334331	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87323336	87323336	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20689653	20689653	+	Translation_Start_Site	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB6	10058	broad.mit.edu	37	2	220074622	220074622	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	153005521	153005521	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89738694	89738694	+	3'UTR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD4	63874	broad.mit.edu	37	14	23078625	23078625	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31351415	31351415	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229567684	229567684	+	Intron	DEL	C	-	-	rs59228224		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236881130	236881130	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236917046	236917046	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACYP2	98	broad.mit.edu	37	2	54494559	54494559	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106614871	106614871	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106881473	106881473	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5191963	5191963	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5237292	5237292	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5263029	5263029	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43837666	43837666	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64587275	64587275	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123166724	123166724	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131812942	131812942	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31117661	31117661	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119301158	119301158	+	Missense_Mutation	SNP	G	T	T	rs146978056		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87974134	87974134	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147967182	147967182	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64800103	64800103	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR2	10551	broad.mit.edu	37	7	16840928	16840928	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109668016	109668016	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105410043	105410043	+	Silent	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIFM1	9131	broad.mit.edu	37	X	129274513	129274513	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86205757	86205757	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134221408	134221408	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A3	22977	broad.mit.edu	37	1	19612451	19612451	+	Silent	SNP	T	G	G	rs139064823		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALAS2	212	broad.mit.edu	37	X	55050158	55050158	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396569	38396569	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129811951	129811951	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129812106	129812106	+	Intron	SNP	C	T	T	rs138450646	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129812123	129812123	+	Intron	DEL	C	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L	200810	broad.mit.edu	37	3	125651462	125651462	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5129739	5129739	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5129756	5129756	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43919178	43919178	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	30076389	30076389	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113303646	113303646	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46568663	46568663	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112590696	112590696	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114269241	114269241	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95481141	95481141	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117864521	117864521	+	5'Flank	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA4	307	broad.mit.edu	37	2	70043264	70043264	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M2	10053	broad.mit.edu	37	19	10692527	10692527	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP10	89872	broad.mit.edu	37	1	154295973	154295973	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAF	369	broad.mit.edu	37	X	47424584	47424584	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36128567	36128567	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130217320	130217320	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11505144	11505144	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10	9639	broad.mit.edu	37	8	1808302	1808302	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131785526	131785526	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNTL	406	broad.mit.edu	37	11	13387016	13387016	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197071122	197071122	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTL	431705	broad.mit.edu	37	2	96795731	96795731	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176953287	176953287	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119366275	119366275	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119802304	119802304	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124359640	124359640	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7	11016	broad.mit.edu	37	12	53994752	53994752	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64664023	64664023	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108205807	108205807	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47560036	47560036	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113473716	113473716	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113473723	113473723	+	Splice_Site	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25265412	25265412	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194175080	194175080	+	Silent	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10417176	10417176	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40659728	40659728	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77298686	77298686	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11021148	11021148	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11048736	11048736	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143561102	143561102	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134353658	134353658	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171493901	171493901	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52611506	52611506	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCYRN1	618	broad.mit.edu	37	X	70453347	70453347	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCYRN1	618	broad.mit.edu	37	X	70535711	70535711	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79766106	79766107	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26237667	26237667	+	5'Flank	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCC3	79184	broad.mit.edu	37	X	154334008	154334008	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79932142	79932142	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG4	54766	broad.mit.edu	37	11	111368964	111368964	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL9	153579	broad.mit.edu	37	5	180482343	180482343	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf59	120939	broad.mit.edu	37	12	10342761	10342761	+	3'UTR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf174	161394	broad.mit.edu	37	14	77844783	77844783	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95884439	95884439	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332187	100332187	+	RNA	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf47	284083	broad.mit.edu	37	17	56620020	56620020	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1363170	1363170	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244769278	244769278	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210010463	210010463	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf112	55732	broad.mit.edu	37	1	169771963	169771963	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf114	57821	broad.mit.edu	37	1	169366528	169366528	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170964486	170964486	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75078352	75078352	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172569837	172569844	+	Intron	DEL	TGTGTGTG	-	-	rs71968558		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31654530	31654530	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf71	128861	broad.mit.edu	37	20	31811863	31811863	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46002496	46002496	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD2	25966	broad.mit.edu	37	21	43327262	43327262	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40966390	40966390	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31736479	31736479	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf66	154907	broad.mit.edu	37	7	108524368	108524368	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69612522	69612522	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10557779	10557779	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15914694	15914694	+	Intron	DEL	A	-	-	rs80170905		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA12	771	broad.mit.edu	37	15	63632682	63632682	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2566852	2566852	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181546994	181546994	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181705572	181705572	+	Splice_Site	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181754790	181754790	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	37027594	37027595	+	Intron	DNP	CA	AC	AC			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	6979619	6979619	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110495141	110495141	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP2	835	broad.mit.edu	37	7	142997119	142997119	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55012273	55012273	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92070710	92070710	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC115	84317	broad.mit.edu	37	2	131098596	131098596	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128432408	128432408	+	5'UTR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC22	28952	broad.mit.edu	37	X	49093592	49093592	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC25	55246	broad.mit.edu	37	8	27606123	27606123	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC57	284001	broad.mit.edu	37	17	80130706	80130706	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC85A	114800	broad.mit.edu	37	2	56500080	56500080	+	Intron	DEL	G	-	-	rs60525863		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL28	56477	broad.mit.edu	37	5	43381991	43381991	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43866067	43866067	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200	4345	broad.mit.edu	37	3	112063714	112063714	+	Intron	SNP	A	G	G	rs149423229	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71062578	71062578	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD247	919	broad.mit.edu	37	1	167410122	167410122	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227333438	227333438	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883263	21883263	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59174687	59174687	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59206373	59206373	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73405688	73405688	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68712778	68712778	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96694099	96694099	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18668393	18668393	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125894478	125894481	+	Intron	DEL	GAGG	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDV3	55573	broad.mit.edu	37	3	133302784	133302784	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42231194	42231194	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109794679	109794679	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214819597	214819597	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13049233	13049233	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES2	8824	broad.mit.edu	37	16	66976721	66976722	+	Intron	DNP	GG	TT	TT	rs28382824		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196684731	196684731	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50863357	50863357	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7806568	7806568	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40050438	40050438	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIA	27159	broad.mit.edu	37	1	111854638	111854638	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHMP2B	25978	broad.mit.edu	37	3	87294816	87294816	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34355078	34355078	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129327493	129327493	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB2	10518	broad.mit.edu	37	15	78415907	78415907	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26852375	26852375	+	Splice_Site	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEC	63924	broad.mit.edu	37	3	9920077	9920077	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122205692	122205692	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143047738	143047738	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122826219	122826219	+	Missense_Mutation	SNP	C	A	A	rs145140413		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140001472	140001472	+	Intron	DEL	C	-	-	rs5852977		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57983037	57983037	+	Intron	DEL	T	-	-	rs152141	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87656851	87656851	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM4	26504	broad.mit.edu	37	2	97474331	97474331	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146182512	146182512	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125623021	125623021	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51095701	51095701	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103388843	103388843	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103398095	103398095	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101830733	101830733	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32149139	32149140	+	Intron	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32156195	32156195	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105831953	105831953	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70637972	70637972	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70856740	70856740	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139869996	139869996	+	Intron	SNP	C	G	G	rs138619381	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL23A1	91522	broad.mit.edu	37	5	177669471	177669471	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107478345	107478345	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189950359	189950359	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238266650	238266650	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47746615	47746615	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7B2	170712	broad.mit.edu	37	4	46737033	46737033	+	Silent	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129914980	129914980	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101829685	101829685	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211464237	211464237	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211515227	211515227	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50209333	50209333	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXCR1	53336	broad.mit.edu	37	X	88008697	88008697	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR2	1395	broad.mit.edu	37	7	30695741	30695741	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36666283	36666283	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5827139	5827139	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16947465	16947465	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16949896	16949896	+	Intron	SNP	T	G	G	rs146963553	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1407648	1407648	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2975879	2975879	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3226686	3226686	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3266895	3266895	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4078130	4078130	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113317163	113317163	+	Intron	SNP	G	C	C	rs140169789	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113326875	113326875	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113358523	113358523	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2T	23283	broad.mit.edu	37	10	53458165	53458165	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56078266	56078266	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79647102	79647102	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68317228	68317228	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	69343428	69343428	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41457512	41457512	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117365197	117365197	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUEDC1	404093	broad.mit.edu	37	17	56010565	56010565	+	Intron	DEL	G	-	-	rs67731750		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44871411	44871411	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf64	100130613	broad.mit.edu	37	X	125955322	125955322	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf66	347487	broad.mit.edu	37	X	139038644	139038644	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135370455	135370455	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15807817	15807817	+	Silent	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480680	57480680	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPL1	92196	broad.mit.edu	37	2	159660784	159660784	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAP	1611	broad.mit.edu	37	5	10683510	10683510	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBNL	28988	broad.mit.edu	37	7	44098510	44098510	+	Missense_Mutation	SNP	G	T	T	rs141421515	byFrequency	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12	25853	broad.mit.edu	37	9	34089245	34089245	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88884993	88884993	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24178641	24178641	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74594678	74594678	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169167914	169167914	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA4	1669	broad.mit.edu	37	8	6794216	6794216	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140301849	140301849	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERA	51071	broad.mit.edu	37	12	16118644	16118644	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137293542	137293542	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS1	115817	broad.mit.edu	37	14	24760615	24760615	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRSX	207063	broad.mit.edu	37	X	2300703	2300703	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39038419	39038419	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	373024	373024	+	Silent	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19642180	19642181	+	Intron	INS	-	ATC	ATC	rs139785382		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107956733	107956733	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1624761	1624761	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31227588	31227588	+	Intron	SNP	C	A	A	rs72466554		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31241365	31241365	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31366614	31366614	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32767053	32767053	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21784037	21784037	+	Intron	SNP	C	A	A	rs729657	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52433737	52433737	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38828271	38828271	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11520631	11520631	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11622753	11622753	+	Silent	SNP	C	G	G	rs111713622		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11681984	11681984	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183616742	183616743	+	Intron	INS	-	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1P35	100128285	broad.mit.edu	37	15	76031451	76031451	+	5'Flank	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172021780	172021780	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT1	1786	broad.mit.edu	37	19	10257064	10257064	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117749590	117749590	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117762120	117762120	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169469081	169469081	+	Missense_Mutation	SNP	G	A	A	rs145262338		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111409561	111409561	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168693894	168693894	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28607461	28607461	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56457000	56457000	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC2	84332	broad.mit.edu	37	10	82126338	82126338	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137799408	137799408	+	Splice_Site	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158440723	158440723	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131761676	131761676	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBI3	10148	broad.mit.edu	37	19	4234679	4234679	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93170803	93170803	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1D	1936	broad.mit.edu	37	8	144668960	144668960	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28380844	28380844	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43950875	43950875	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E2	9470	broad.mit.edu	37	2	233431487	233431487	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF4	2000	broad.mit.edu	37	X	129208201	129208201	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31616420	31616420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79470911	79470911	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66286125	66286125	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97185130	97185130	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23239017	23239017	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23239019	23239019	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65288517	65288517	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56467671	56467671	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128016978	128016978	+	Missense_Mutation	SNP	G	A	A	rs4150521	byFrequency	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23712306	23712306	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVL	51466	broad.mit.edu	37	14	100511612	100511612	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169513896	169513896	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169529742	169529742	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138613048	138613048	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM119A	151194	broad.mit.edu	37	2	208478080	208478080	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63413218	63413218	+	5'UTR	DEL	C	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184797944	184797944	+	Intron	DEL	T	-	-	rs11361571		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164170	139164170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139277996	139277996	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177156557	177156557	+	Splice_Site	SNP	C	A	A	rs147363353		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175526052	175526052	+	Intron	SNP	C	T	T	rs138137150	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30915112	30915112	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86131381	86131390	+	Frame_Shift_Del	DEL	CTCCTGTGCC	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2701538	2701538	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM23A	653567	broad.mit.edu	37	10	17813283	17813283	+	Intron	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10690977	10690977	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45B	55855	broad.mit.edu	37	X	129629472	129629472	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148327	34148327	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34150064	34150064	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34150393	34150393	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961280	34961280	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM63B	54629	broad.mit.edu	37	15	59102306	59102306	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12409598	12409598	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119419885	119419885	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43627822	43627822	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM89A	375061	broad.mit.edu	37	1	231155894	231155894	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM90A1	55138	broad.mit.edu	37	12	8380297	8380297	+	5'Flank	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33827100	33827100	+	5'Flank	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163029885	163029885	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29460824	29460825	+	Intron	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARS2	10667	broad.mit.edu	37	6	5750405	5750405	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223507723	223507723	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187557156	187557156	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126319898	126319898	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127670448	127670448	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127697428	127697428	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5958468	5958469	+	Intron	DEL	AG	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO2	115548	broad.mit.edu	37	5	72317062	72317062	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137803189	137803189	+	Intron	DEL	T	-	-	rs34307683		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159777763	159777763	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125072659	125072659	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123310733	123310734	+	Intron	INS	-	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL2	10875	broad.mit.edu	37	7	76828787	76828787	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34174679	34174679	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241663636	241663636	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIP1L1	81608	broad.mit.edu	37	4	54319108	54319108	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152331134	152331134	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279610	152279610	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142505516	142505516	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ44635	392490	broad.mit.edu	37	X	71364337	71364337	+	5'UTR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLYWCH1	84256	broad.mit.edu	37	16	2972902	2972902	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240306045	240306045	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240409095	240409095	+	Intron	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159688877	159688877	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNIP2	57600	broad.mit.edu	37	4	159791535	159791535	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89405238	89405238	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49179650	49179650	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR4	390243	broad.mit.edu	37	11	94039196	94039196	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79447580	79447580	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29613940	29613940	+	Intron	SNP	C	T	T	rs76866378		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69374227	69374227	+	Intron	DEL	A	-	-	rs112470737		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37745336	37745336	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49345763	49345763	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71318473	71318473	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD6	53826	broad.mit.edu	37	11	117712648	117712648	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47322175	47322175	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26828544	26828544	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46053559	46053559	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27334280	27334280	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31178601	31178601	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16254335	16254335	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11424586	11424586	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173150762	173150762	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173883853	173883853	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCKR	2646	broad.mit.edu	37	2	27746241	27746241	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF3	9573	broad.mit.edu	37	12	7842804	7842804	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD1	284161	broad.mit.edu	37	17	57348398	57348398	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76954731	76954731	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95262803	95262803	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85777883	85777883	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHITM	27069	broad.mit.edu	37	10	85901331	85901331	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46178075	46178075	+	Silent	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB4	127534	broad.mit.edu	37	1	35226919	35226919	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB5	2709	broad.mit.edu	37	1	35222838	35222838	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121742339	121742339	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151271916	151271916	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183924132	183924132	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20331682	20331682	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR143	4935	broad.mit.edu	37	X	9709396	9709396	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154070869	154070869	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR17	2840	broad.mit.edu	37	2	128408864	128408864	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR87	53836	broad.mit.edu	37	3	151012910	151012910	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89943647	89943647	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90079719	90079719	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28473455	28473455	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28478622	28478622	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123480980	123480980	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50672887	50672887	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165404188	165404188	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB2	2885	broad.mit.edu	37	17	73389716	73389716	+	5'UTR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10102667	10102667	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10009157	10009157	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13839351	13839351	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7348394	7348394	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA3	2940	broad.mit.edu	37	6	52766960	52766960	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108695482	108695482	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21461787	21461787	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACE1	57531	broad.mit.edu	37	6	105192075	105192075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73624780	73624780	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19015566	19015566	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37297272	37297272	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93258750	93258750	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43283608	43283608	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92824983	92824983	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93834662	93834662	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32164106	32164106	+	5'Flank	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81346729	81346729	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AE	3012	broad.mit.edu	37	6	26217142	26217142	+	5'Flank	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185959617	185959617	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186062355	186062355	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186077690	186077690	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH3	3189	broad.mit.edu	37	10	70097583	70097583	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42821867	42821868	+	Intron	DNP	GG	TT	TT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18313428	18313428	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNBP3	146713	broad.mit.edu	37	17	77299934	77299935	+	Intron	DEL	TG	-	-	rs67071194		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148842495	148842495	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118434798	118434798	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM5	7087	broad.mit.edu	37	19	10404530	10404530	+	Missense_Mutation	SNP	G	T	T	rs147074144		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT81	28981	broad.mit.edu	37	12	110630618	110630618	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP1	3484	broad.mit.edu	37	7	45930420	45930420	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118647314	118647314	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118647653	118647653	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117146239	117146239	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111661296	111661296	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKE	9641	broad.mit.edu	37	1	206648289	206648289	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RB	55540	broad.mit.edu	37	3	53886163	53886163	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RC	84818	broad.mit.edu	37	3	9959148	9959148	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29325241	29325241	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RA	53832	broad.mit.edu	37	6	137330566	137330566	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71940001	71940001	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS7	25896	broad.mit.edu	37	1	212126071	212126071	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50686974	50686974	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50689292	50689292	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145528014	145528014	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31434818	31434818	+	Intron	DEL	C	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30490502	30490502	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45363551	45363551	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102140970	102140970	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH3	3699	broad.mit.edu	37	3	52840934	52840934	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54777633	54777633	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54779998	54779998	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54817226	54817226	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78616706	78616706	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVD	3712	broad.mit.edu	37	15	40705048	40705048	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39778587	39778587	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123946896	123946896	+	Missense_Mutation	SNP	G	T	T	rs36107295		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124165917	124165917	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155711582	155711582	+	Silent	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39129836	39129836	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215342563	215342563	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44276029	44276030	+	Intron	INS	-	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110984867	110984867	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24173982	24173982	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53223962	53223962	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55968679	55968679	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73486159	73486159	+	Intron	DEL	A	-	-	rs34908427		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43894141	43894141	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5464978	5464978	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181645	57181645	+	Silent	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138530886	138530886	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109742406	109742406	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5765719	5765719	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1345538	1345538	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118719676	118719676	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF11	3832	broad.mit.edu	37	10	94369087	94369087	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4927272	4927272	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245820444	245820444	+	Intron	DEL	G	-	-	rs34852394		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57962848	57962848	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57970279	57970279	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	137065603	137065603	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86877378	86877378	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	rs121913240		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33B	3884	broad.mit.edu	37	17	39521815	39521815	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52824463	52824463	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654973	31654973	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KY	339855	broad.mit.edu	37	3	134337951	134337951	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAGE3	8270	broad.mit.edu	37	X	153706443	153706443	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107756444	107756444	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL3	347404	broad.mit.edu	37	X	37518781	37518781	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154173195	154173195	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203743159	203743159	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36997831	36997831	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136558283	136558283	+	Missense_Mutation	SNP	C	A	A	rs146614143	byFrequency	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136566189	136566189	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16760835	16760835	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54967459	54967459	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPROTL1	23484	broad.mit.edu	37	8	29963354	29963354	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETMD1	25875	broad.mit.edu	37	12	51443007	51443007	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95552819	95552819	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71928840	71928840	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150622	150622	broad.mit.edu	37	2	6078866	6078866	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148009747	148009747	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285501	285501	broad.mit.edu	37	4	178702858	178702858	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27540364	27540364	+	5'UTR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441455	441455	broad.mit.edu	37	9	99488700	99488700	+	RNA	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3405414	3405414	+	RNA	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91811976	91811976	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91811978	91811978	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC91948	91948	broad.mit.edu	37	15	98417282	98417282	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160903809	160903810	+	RNA	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1474215	1474215	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN2	9663	broad.mit.edu	37	18	2925289	2925289	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19813437	19813437	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100176036	100176036	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85984731	85984731	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141116333	141116333	+	Intron	DEL	A	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141625151	141625151	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141680487	141680487	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141812561	141812561	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169986952	169986952	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46880747	46880748	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12352942	12352942	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25450201	25450201	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62856868	62856868	+	Silent	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137750	40137750	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70477610	70477610	+	Splice_Site	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70493742	70493742	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70524897	70524897	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP1	9208	broad.mit.edu	37	2	238688021	238688021	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77748756	77748756	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTA	4049	broad.mit.edu	37	6	31540548	31540548	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141290725	141290725	+	Missense_Mutation	SNP	G	C	C	rs150181121		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65479268	65479268	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOA	4128	broad.mit.edu	37	X	43587335	43587335	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172945095	172945095	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K7	6885	broad.mit.edu	37	6	91226181	91226181	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K3	8491	broad.mit.edu	37	2	39514070	39514070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102413810	102413810	+	Intron	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20031406	20031406	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111430	165111430	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217211356	217211356	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAS1L	116511	broad.mit.edu	37	6	29455361	29455361	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASTL	84930	broad.mit.edu	37	10	27475433	27475433	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3838457	3838457	+	Splice_Site	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138678654	138678654	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDFIC	29969	broad.mit.edu	37	7	114641774	114641775	+	Intron	INS	-	T	T	rs147364626	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207615683	207615683	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDP1	145553	broad.mit.edu	37	14	24683754	24683754	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70347238	70347238	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70348171	70348171	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126653766	126653766	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF11	84465	broad.mit.edu	37	15	66250171	66250171	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74928874	74928874	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID2	11043	broad.mit.edu	37	X	107084310	107084310	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR513B	100302253	broad.mit.edu	37	X	146280741	146280741	+	5'Flank	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR548F1	100302192	broad.mit.edu	37	10	56367641	56367641	+	RNA	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR873	100126316	broad.mit.edu	37	9	28888880	28888880	+	RNA	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151945112	151945112	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23313044	23313044	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89179958	89179958	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55525795	55525796	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575858	49575858	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108751518	108751518	+	Intron	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24703431	24703431	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP7	143098	broad.mit.edu	37	10	28483647	28483647	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MR1	3140	broad.mit.edu	37	1	181018211	181018211	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRM1	79922	broad.mit.edu	37	17	34964752	34964752	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59858031	59858031	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60161284	60161284	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7873438	7873438	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124646922	124646922	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089919	9089919	+	Silent	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113496752	113496752	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49426988	49426988	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA7	439921	broad.mit.edu	37	17	74684255	74684255	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYC	4609	broad.mit.edu	37	8	128750409	128750409	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108220687	108220688	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10354557	10354557	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL7	58498	broad.mit.edu	37	7	44178555	44178555	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109613874	109613874	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8590441	8590441	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95157206	95157206	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175520847	175520847	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101714312	101714312	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101756875	101756875	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101871790	101871790	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102029288	102029288	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS	4677	broad.mit.edu	37	18	55282959	55282959	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145293914	145293914	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311578	145311578	+	Intron	SNP	G	T	T	rs71726687		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16893066	16893066	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16904391	16904391	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16908676	16908676	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113076548	113076548	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54912574	54912574	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133635593	133635593	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73290479	73290479	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG3	57446	broad.mit.edu	37	20	35284998	35284998	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA13	51079	broad.mit.edu	37	19	19626829	19626829	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA9	4704	broad.mit.edu	37	12	4768111	4768111	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21120401	21120401	+	Splice_Site	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152362882	152362882	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91937934	91937934	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAP1	25977	broad.mit.edu	37	12	8235114	8235114	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27243842	27243842	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27256489	27256489	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27387648	27387648	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170323054	170323054	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170520373	170520373	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45079577	45079577	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NENF	29937	broad.mit.edu	37	1	212619001	212619002	+	Intron	INS	-	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204915743	204915743	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAT5	10725	broad.mit.edu	37	16	69681331	69681331	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX3-2	579	broad.mit.edu	37	4	13544252	13544252	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981511	7981511	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981770	7981770	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7063513	7063513	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7079110	7079110	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56466894	56466894	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31599491	31599491	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL6	65083	broad.mit.edu	37	9	33467824	33467824	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120536821	120536821	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120558252	120558252	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69339115	69339115	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72959099	72959099	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36326483	36326483	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106888393	106888393	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32774641	32774641	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H3	10062	broad.mit.edu	37	11	47281927	47281927	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119501720	119501720	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119534325	119534325	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129317417	129317417	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83706966	83706966	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84538918	84538918	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33619677	33619677	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50966336	50966336	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64458817	64458817	+	Intron	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79490340	79490340	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80130240	80130240	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44788392	44788392	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18766374	18766374	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131737742	131737742	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107979286	107979286	+	Splice_Site	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69113304	69113304	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135323374	135323374	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL2	11097	broad.mit.edu	37	7	23224772	23224773	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM2	4951	broad.mit.edu	37	7	97614339	97614339	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128725064	128725064	+	3'UTR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	124097239	124097239	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGN	4969	broad.mit.edu	37	9	95165730	95165730	+	5'UTR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154339016	154339017	+	Intron	INS	-	G	G	rs142631227	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29399823	29399823	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107331963	107331963	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L6	392390	broad.mit.edu	37	9	125512600	125512600	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57971021	57971021	+	Silent	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A7	401427	broad.mit.edu	37	7	143973506	143973506	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657464	143657464	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202413	248202413	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248814014	248814014	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248613599	248613600	+	5'Flank	DEL	AC	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5509781	5509781	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4843075	4843075	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4944782	4944782	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52D1	390066	broad.mit.edu	37	11	5510137	5510138	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080793	5080793	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4824735	4824735	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344538	56344538	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E24	26648	broad.mit.edu	37	19	9362217	9362217	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A2	135924	broad.mit.edu	37	7	142723999	142724000	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL11	114885	broad.mit.edu	37	3	125279150	125279150	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4199344	4199344	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32058817	32058817	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29615067	29615067	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVOL2	58495	broad.mit.edu	37	20	18005403	18005403	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107754530	107754530	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90691483	90691483	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACSIN1	29993	broad.mit.edu	37	6	34497109	34497109	+	Intron	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACSIN2	11252	broad.mit.edu	37	22	43272936	43272936	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH1B3	5050	broad.mit.edu	37	19	42804211	42804211	+	Nonsense_Mutation	SNP	C	A	A	rs145175030		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110274150	110274150	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110385189	110385189	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110439559	110439559	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169589483	169589483	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118950437	118950437	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205496946	205496946	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161954962	161954962	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161973117	161973117	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP3	10039	broad.mit.edu	37	3	51979834	51979834	+	Intron	DEL	C	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATL1	219988	broad.mit.edu	37	11	59405712	59405712	+	3'UTR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36882019	36882019	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47217801	47217801	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072408	134072408	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55591282	55591282	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138451915	138451915	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140182233	140182233	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590654	140590654	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559700	140559701	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82532040	82532040	+	Silent	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117097897	117097897	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178862754	178862754	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178862780	178862780	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20769338	20769338	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66831345	66831345	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144938743	144938743	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144969333	144969336	+	Intron	DEL	CAAA	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144999151	144999151	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54256619	54256619	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54751362	54751362	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55141092	55141092	+	Missense_Mutation	SNP	C	A	A	rs143003840		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55156405	55156405	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA1	5160	broad.mit.edu	37	X	19372563	19372563	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDP1	54704	broad.mit.edu	37	8	94935646	94935646	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3147690	3147690	+	Silent	SNP	G	T	T	rs144604806	byFrequency;by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133548050	133548050	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71840577	71840577	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98411325	98411325	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209215983	209215983	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L1	9033	broad.mit.edu	37	10	102058218	102058218	+	Intron	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155264135	155264135	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2D	26279	broad.mit.edu	37	1	20446012	20446012	+	5'Flank	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8630053	8630053	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD2	5338	broad.mit.edu	37	17	4714202	4714202	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242352883	242352884	+	Intron	DEL	AA	-	-	rs140738159		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16847578	16847578	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1P	440456	broad.mit.edu	37	17	62820937	62820937	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM3	389072	broad.mit.edu	37	2	208842339	208842339	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161132805	161132805	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23700734	23700734	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24844714	24844714	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121168430	121168430	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18800480	18800480	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7558199	7558199	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIF	10105	broad.mit.edu	37	10	81111255	81111255	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R14A	94274	broad.mit.edu	37	19	38743018	38743018	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1B	84152	broad.mit.edu	37	17	37788632	37788633	+	Intron	DEL	CG	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94745062	94745062	+	3'UTR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC2	54896	broad.mit.edu	37	1	19651259	19651259	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCP	5547	broad.mit.edu	37	11	82560238	82560238	+	Silent	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47268161	47268161	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47269935	47269935	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47269937	47269937	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68934373	68934373	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69141432	69141432	+	Intron	DEL	T	-	-	rs35765956		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG2	5553	broad.mit.edu	37	11	57173729	57173730	+	Intron	INS	-	C	C	rs142598803	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57512785	57512785	+	3'UTR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCDBP	112464	broad.mit.edu	37	11	6341223	6341223	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCZ	5590	broad.mit.edu	37	1	2106259	2106259	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37516516	37516516	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	52898698	52898698	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT2	3275	broad.mit.edu	37	21	48071791	48071791	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43579454	43579454	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD1	139411	broad.mit.edu	37	X	23397857	23397857	+	Silent	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112939970	112939970	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN9	5780	broad.mit.edu	37	15	75761285	75761285	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70930063	70930063	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198675924	198675924	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198710986	198710986	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40730771	40730771	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21598277	21598277	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB27B	5874	broad.mit.edu	37	18	52555206	52555206	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82698586	82698586	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174164755	174164758	+	Intron	DEL	CTTC	-	-	rs71878256		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174372386	174372389	+	Intron	DEL	TATA	-	-	rs28735349		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45457224	45457224	+	RNA	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1	29127	broad.mit.edu	37	12	50393065	50393065	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG2	5897	broad.mit.edu	37	11	36614149	36614149	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173855682	173855682	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179529113	179529113	+	Missense_Mutation	SNP	C	T	T	rs139061980		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33749220	33749220	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53586878	53586878	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155129873	155129873	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79942937	79942937	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM34	23029	broad.mit.edu	37	1	235295246	235295246	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349086	79349086	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255168	79255168	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REM2	161253	broad.mit.edu	37	14	23354108	23354108	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REST	5978	broad.mit.edu	37	4	57797251	57797251	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109698546	109698546	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192127712	192127712	+	5'UTR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73003083	73003083	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31422762	31422762	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF103	7844	broad.mit.edu	37	2	86847581	86847582	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF125	54941	broad.mit.edu	37	18	29617328	29617328	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141789440	141789440	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF214	257160	broad.mit.edu	37	11	117150546	117150547	+	Intron	DNP	GG	TT	TT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPS1	10921	broad.mit.edu	37	16	2314156	2314156	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77286834	77286834	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113307819	113307819	+	Silent	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116951425	116951425	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTF1	23168	broad.mit.edu	37	15	41762554	41762554	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUSC2	9853	broad.mit.edu	37	9	35547523	35547523	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937928	33937928	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237753741	237753741	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947067	237947067	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33925214	33925214	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988937	134988937	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50407375	50407375	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18390907	18390907	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	53831571	53831571	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1D1	10648	broad.mit.edu	37	11	61957767	61957767	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38770317	38770317	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166021094	166021094	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151140399	151140399	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121692698	121692698	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25834645	25834645	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83764303	83764303	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80380761	80380761	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9119214	9119214	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA10	51156	broad.mit.edu	37	14	94756235	94756235	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61569691	61569691	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61154283	61154283	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224866446	224866446	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57373796	57373796	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERTAD3	29946	broad.mit.edu	37	19	40947447	40947447	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30975604	30975604	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47098503	47098503	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7247813	7247813	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85892885	85892885	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGEF	26084	broad.mit.edu	37	3	153912517	153912517	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67105479	67105479	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28883246	28883246	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51165487	51165487	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70709452	70709452	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96318202	96318202	+	3'UTR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA6	388336	broad.mit.edu	37	17	11207908	11207908	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52132629	52132629	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164758884	164758884	+	Splice_Site	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45228544	45228544	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A7	57030	broad.mit.edu	37	19	49934329	49934329	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64359070	64359070	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A9	114571	broad.mit.edu	37	11	63141594	63141594	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19786048	19786048	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A45	283130	broad.mit.edu	37	11	65147454	65147454	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107334933	107334933	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128320947	128320947	+	Silent	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86902917	86902917	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A10	55532	broad.mit.edu	37	1	219907557	219907558	+	Intron	INS	-	A	A	rs5781138		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234271791	234271791	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A14	23516	broad.mit.edu	37	8	22273459	22273459	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1AP	22950	broad.mit.edu	37	2	27889984	27889984	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42337143	42337143	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A6	8884	broad.mit.edu	37	2	27423517	27423517	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	301674	301674	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87242008	87242008	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70148591	70148591	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21349861	21349861	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168149935	168149935	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK2	57223	broad.mit.edu	37	2	55825506	55825506	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183446533	183446534	+	Intron	INS	-	TG	TG	rs143157038	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88384128	88384128	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-B2	100170217	broad.mit.edu	37	19	50639205	50639205	+	5'Flank	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25299342	25299342	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51613043	51613043	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130785334	130785334	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12269864	12269866	+	Intron	DEL	AAC	-	-	rs141950920		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106927100	106927100	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121460900	121460900	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX11	6664	broad.mit.edu	37	2	5833048	5833048	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16424104	16424104	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231338154	231338154	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231135185	231135185	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP1	6667	broad.mit.edu	37	12	53775908	53775908	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118583622	118583622	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123593676	123593676	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337692	144337692	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16727087	16727087	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA2	9825	broad.mit.edu	37	20	48525056	48525056	+	5'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE4	388333	broad.mit.edu	37	17	8656602	8656602	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228881213	228881213	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	229007136	229007136	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIN1	10927	broad.mit.edu	37	9	91041518	91041518	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167890889	167890889	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY3	10251	broad.mit.edu	37	X	155004532	155004532	+	3'UTR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158582603	158582603	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158582871	158582871	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158584094	158584094	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612912	158612912	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158618310	158618311	+	Missense_Mutation	DNP	GG	CC	CC			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158621000	158621000	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66460730	66460730	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX1	6756	broad.mit.edu	37	X	48116852	48116852	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48053578	48053578	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53045903	53045903	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL6	10402	broad.mit.edu	37	3	98491720	98491720	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD5	80765	broad.mit.edu	37	15	81610725	81610725	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STL	7955	broad.mit.edu	37	6	125233323	125233323	+	RNA	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOX1	219736	broad.mit.edu	37	10	70646416	70646417	+	Intron	DNP	GG	AT	AT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUFU	51684	broad.mit.edu	37	10	104332673	104332673	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46295154	46295154	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114911476	114911476	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75449124	75449124	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCE2	256126	broad.mit.edu	37	19	13011420	13011420	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10887382	10887382	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN1	6853	broad.mit.edu	37	X	47464643	47464643	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64443330	64443330	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119951385	119951385	+	Silent	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33529653	33529653	+	3'UTR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62542187	62542187	+	Intron	DEL	A	-	-	rs35857227		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99941662	99941662	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61089918	61089919	+	Intron	INS	-	C	C	rs149453360	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13367596	13367596	+	Intron	SNP	G	A	A	rs150811822	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D19	55296	broad.mit.edu	37	4	26721783	26721783	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100014011	100014011	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65180447	65180447	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69960564	69960564	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55206242	55206242	+	Intron	DEL	T	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFA	7039	broad.mit.edu	37	2	70742093	70742093	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92193448	92193448	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2381128	2381128	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133913644	133913644	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36748202	36748202	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THYN1	29087	broad.mit.edu	37	11	134119194	134119194	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM8A	1678	broad.mit.edu	37	X	100603498	100603498	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMP1	7076	broad.mit.edu	37	X	47444636	47444636	+	Silent	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153524338	153524338	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153551620	153551620	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE2	7089	broad.mit.edu	37	19	3028692	3028692	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR1	7096	broad.mit.edu	37	4	38799909	38799909	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12940114	12940114	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	133050235	133050235	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	87013349	87013349	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM165	55858	broad.mit.edu	37	4	56290701	56290701	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM48	55706	broad.mit.edu	37	1	54262454	54262454	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68812124	68812124	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68749616	68749616	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88589117	88589117	+	Silent	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP2	7174	broad.mit.edu	37	13	103317145	103317145	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10941970	10941970	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10943071	10943071	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM2	9697	broad.mit.edu	37	6	52369391	52369391	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141304865	141304865	+	Intron	DEL	C	-	-	rs34570375		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123539833	123539833	+	Silent	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41166027	41166027	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM60	166655	broad.mit.edu	37	4	165961707	165961707	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122853688	122853688	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45773846	45773846	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116616277	116616277	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142606565	142606565	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98560207	98560207	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142481653	142481653	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142482269	142482269	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872217	51872217	+	Silent	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNARE1	203062	broad.mit.edu	37	8	143396532	143396532	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL2	64061	broad.mit.edu	37	X	53114877	53114877	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3341646	3341646	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84356272	84356272	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179594622	179594622	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179604301	179604301	+	Silent	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179612314	179612314	+	Missense_Mutation	SNP	A	G	G	rs140786524		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBD1	51174	broad.mit.edu	37	17	57958410	57958410	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158923886	158923886	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC11	51061	broad.mit.edu	37	16	11782158	11782159	+	Splice_Site	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109926163	109926163	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42626495	42626495	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34824255	34824255	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1	29128	broad.mit.edu	37	19	4954525	4954525	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17752414	17752414	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35425584	35425584	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35608193	35608193	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216138948	216138948	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216464504	216464504	+	Intron	DEL	A	-	-	rs76594975		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216595416	216595416	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23109057	23109057	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11926949	11926949	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP53	54532	broad.mit.edu	37	4	120213653	120213653	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5035674	5035674	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5042785	5042785	+	Silent	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49346142	49346142	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101763434	101763434	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXT	8409	broad.mit.edu	37	X	47516658	47516658	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111567382	111567382	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116764077	116764077	+	IGR	DEL	A	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	119628036	119628036	+	IGR	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133520937	133520938	+	IGR	DEL	CA	-	-	rs139837786		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15768219	15768219	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19494254	19494254	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23105758	23105758	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	27752764	27752764	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42641012	42641012	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42641038	42641038	+	IGR	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46210427	46210427	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93426682	93426682	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	96407696	96407696	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	99857401	99857401	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106407972	106407972	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115943874	115943874	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	128489965	128489965	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15296178	15296178	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22334505	22334505	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49089252	49089252	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49121262	49121262	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426366	51426366	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059966	55059966	+	IGR	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55607222	55607222	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268580	56268580	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6150008	6150008	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87145280	87145280	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93200263	93200263	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93343044	93343044	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97353998	97353998	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	116281215	116281215	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	124577268	124577268	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13582429	13582429	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	18349174	18349174	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38756836	38756836	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54153060	54153060	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64158943	64158943	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	66502479	66502479	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83991214	83991214	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94943256	94943256	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98463487	98463487	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	108770046	108770046	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110132133	110132133	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110549950	110549950	+	IGR	DEL	A	-	-	rs35811096		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	51744360	51744360	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61879958	61879959	+	IGR	INS	-	C	C	rs146451084	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63626785	63626785	+	IGR	DEL	T	-	-	rs79564761		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75305277	75305277	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82030034	82030034	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147847	20147847	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265148	20265148	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44577904	44577904	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54730653	54730653	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66612827	66612827	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71802628	71802628	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82531907	82531907	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82808607	82808607	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87774067	87774067	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99167211	99167211	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99411454	99411454	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35131749	35131749	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	71070167	71070167	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	16694985	16694985	+	IGR	DEL	T	-	-	rs113782878		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32393248	32393248	+	IGR	DEL	T	-	-	rs139578049		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32487011	32487011	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32626857	32626857	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32833257	32833257	+	IGR	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32858927	32858927	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32859222	32859222	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33379993	33379993	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402053	33402053	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33497747	33497747	+	IGR	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34582694	34582694	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49047063	49047063	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49271025	49271025	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51447339	51447340	+	IGR	INS	-	A	A	rs140083520	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52788120	52788120	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59862617	59862624	+	IGR	DEL	AGAGAGAA	-	-	rs147928107	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61671538	61671539	+	IGR	DEL	TC	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63438032	63438032	+	IGR	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	68038234	68038234	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	7863624	7863624	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9309046	9309046	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16520753	16520753	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	17145883	17145883	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20386029	20386029	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21553049	21553049	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21553396	21553398	+	IGR	DEL	TGA	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22215389	22215389	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25286944	25286944	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	35098600	35098600	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39061075	39061075	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52358406	52358406	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52555353	52555353	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54055182	54055182	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	5516313	5516313	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	66624631	66624632	+	IGR	DEL	TG	-	-	rs78155060		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14361623	14361623	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15171081	15171081	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	1729987	1729987	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22392753	22392753	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26233117	26233117	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39240164	39240164	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	56868224	56868224	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70268843	70268844	+	IGR	DNP	CC	AG	AG			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27736136	27736136	+	IGR	SNP	G	A	A	rs77195545		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30277319	30277319	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	33723231	33723231	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36448004	36448004	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117282684	117282684	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118238892	118238893	+	IGR	INS	-	T	T	rs142039004	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120630172	120630172	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121483107	121483107	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142542656	142542656	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142542663	142542663	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142608785	142608785	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143492296	143492296	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146584267	146584267	+	IGR	SNP	C	T	T	rs143714345	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149024829	149024829	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149034476	149034476	+	IGR	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149091683	149091683	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149104275	149104275	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152716956	152716956	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161541950	161541950	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16877138	16877138	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168792351	168792351	+	IGR	DEL	A	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187448109	187448109	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532396	187532396	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188382345	188382348	+	IGR	DEL	TGTA	-	-	rs3076886		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189958666	189958666	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189962072	189962072	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191027035	191027035	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191027078	191027078	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191345177	191345177	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192577543	192577543	+	IGR	DEL	C	-	-	rs5779645		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193800553	193800553	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198526301	198526301	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199341369	199341369	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	201997740	201997740	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213732133	213732133	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	218151224	218151224	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222302682	222302685	+	IGR	DEL	ATTC	-	-	rs113195079		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224960071	224960071	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229949972	229949972	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238654850	238654850	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239216000	239216000	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242988100	242988101	+	IGR	INS	-	GAGGTCTT	GAGGTCTT	rs149666795	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247835394	247835394	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31961597	31961597	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37615196	37615196	+	IGR	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	62029031	62029031	+	IGR	DEL	A	-	-	rs111413693		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68126576	68126576	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77726596	77726596	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88341988	88341988	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96594329	96594329	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	153298	153299	+	IGR	INS	-	TC	TC	rs113424713		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	19020335	19020335	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40669162	40669162	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	52490917	52490917	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10086964	10086964	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10411651	10411651	+	IGR	SNP	G	C	C	rs4124990	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10442793	10442793	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885910	10885910	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14365690	14365690	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20618386	20618386	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	25231122	25231122	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28175542	28175542	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31869157	31869157	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16909896	16909897	+	IGR	DEL	AC	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106961513	106961513	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113579982	113579982	+	IGR	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116750889	116750889	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117750911	117750911	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130988319	130988319	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132354486	132354486	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132764643	132764643	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13308956	13308956	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555070	13555071	+	IGR	DNP	GG	TT	TT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14180929	14180929	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155497144	155497144	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17628666	17628666	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187268957	187268957	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187843921	187843921	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	193783354	193783354	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194142371	194142371	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284655	207284655	+	IGR	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220950691	220950691	+	IGR	DEL	G	-	-	rs34381908		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221549377	221549377	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36294273	36294273	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	45075576	45075576	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	50012773	50012773	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	51403554	51403554	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59322721	59322721	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59422232	59422232	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72079776	72079776	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7208437	7208437	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79272716	79272716	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91794899	91794899	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872886	91872886	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924836	91924836	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92076589	92076589	+	IGR	DEL	T	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	114998388	114998388	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125422260	125422260	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135504230	135504230	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	150441187	150441190	+	IGR	DEL	TTCC	-	-	rs10539984		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166011905	166011905	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174640	174640	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176044599	176044599	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182410101	182410101	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	184512382	184512382	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194476988	194476989	+	IGR	DNP	CC	AT	AT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	43824533	43824533	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5749295	5749295	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67156904	67156904	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	70174284	70174284	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80435544	80435544	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100941	87100941	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88935508	88935508	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	93921813	93921813	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109447697	109447697	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113660169	113660169	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116091511	116091511	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116842446	116842446	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121263711	121263711	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	126891947	126891947	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	127484737	127484737	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134991636	134991636	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139544787	139544787	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139847850	139847851	+	IGR	INS	-	T	T	rs147410955	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	153473222	153473222	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161106435	161106435	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180320430	180320430	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18225483	18225483	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18574324	18574324	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190418846	190418846	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190590211	190590211	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190711644	190711644	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4176932	4176932	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49309379	49309379	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49323416	49323416	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	59276704	59276704	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355750	63355750	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355796	63355796	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216272	64216272	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67821540	67821540	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	82157720	82157720	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128538572	128538572	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152508145	152508145	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157116935	157116935	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	168042515	168042515	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	179367074	179367074	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304558	20304558	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304770	20304770	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911082	25911082	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911259	25911259	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28046012	28046012	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40066702	40066702	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41587745	41587745	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42892502	42892502	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71229508	71229508	+	IGR	SNP	G	A	A	rs147326072	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71842165	71842166	+	IGR	DEL	TT	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	766908	766908	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8083132	8083132	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84755171	84755171	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	87217322	87217322	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99284391	99284391	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133318792	133318792	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	138971640	138971640	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	143663781	143663781	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	161372533	161372533	+	IGR	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19456488	19456488	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23972575	23972575	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	26739426	26739426	+	IGR	SNP	T	A	A	rs142620430	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	31807585	31807585	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41156221	41156221	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49295801	49295802	+	IGR	DEL	CA	-	-	rs137953923		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50321525	50321525	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52213969	52213969	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54635727	54635728	+	IGR	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57973436	57973436	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57975549	57975549	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5839525	5839525	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58570361	58570361	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80036641	80036641	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82616251	82616251	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85998282	85998282	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	101969987	101969987	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634569	108634570	+	IGR	DNP	CC	AT	AT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112161567	112161567	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	11922068	11922068	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121796266	121796266	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131338869	131338871	+	IGR	DEL	GTA	-	-	rs72544954		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143702153	143702153	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145096381	145096381	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	33787370	33787370	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41580553	41580553	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46708028	46708028	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53178898	53178898	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54887396	54887396	+	IGR	DEL	C	-	-	rs34780665		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56717704	56717704	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57299328	57299328	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57710449	57710449	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61664253	61664253	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61826074	61826074	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61826267	61826267	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61830109	61830109	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67719724	67719724	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76396732	76396732	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84612929	84612929	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88195351	88195351	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93021499	93021499	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93211632	93211632	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	94368044	94368044	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108206171	108206171	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111667427	111667427	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112964503	112964503	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116136952	116136952	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	119792413	119792414	+	IGR	INS	-	A	A	rs143164970	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120041968	120041969	+	IGR	INS	-	G	G	rs144051377	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	129408034	129408034	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132820660	132820660	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132820726	132820726	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134415512	134415512	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137529706	137529707	+	IGR	INS	-	TA	TA	rs35987784		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	2234278	2234278	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36953546	36953546	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36955817	36955817	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	41969418	41969418	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43416657	43416657	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47341689	47341689	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47547747	47547747	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66903690	66903691	+	IGR	INS	-	T	T	rs144158580	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	71418838	71418838	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89389563	89389563	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	99452220	99452220	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103647994	103647994	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122654863	122654863	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16394330	16394330	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31809648	31809648	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40302063	40302063	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44864335	44864335	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482111	66482111	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67335883	67335883	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68415480	68415480	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69802956	69802956	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76089375	76089375	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76264245	76264245	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90452171	90452171	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100794106	100794106	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101429318	101429318	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106845402	106845403	+	IGR	INS	-	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863041	110863042	+	IGR	INS	-	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	112480648	112480648	+	IGR	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114636225	114636225	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122648652	122648652	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128450608	128450608	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128542437	128542437	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134776199	134776199	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136744425	136744425	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141283834	141283834	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143883706	143883706	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144123634	144123634	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147526567	147526567	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150394684	150394684	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150395189	150395189	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150684315	150684315	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150945331	150945331	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	154667931	154667931	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155214565	155214565	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215543	155215543	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212453	25212453	+	IGR	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	31051716	31051716	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36743000	36743000	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39304451	39304451	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46048468	46048468	+	IGR	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	47483526	47483526	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57704436	57704436	+	IGR	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63832795	63832795	+	IGR	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	66593517	66593517	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68785351	68785351	+	IGR	SNP	T	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68790583	68790583	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83096685	83096685	+	IGR	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92643590	92643590	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97644828	97644828	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	99406420	99406420	+	IGR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10011659	10011659	+	IGR	DEL	A	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13446228	13446228	+	IGR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13446588	13446588	+	IGR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13476564	13476564	+	IGR	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59030225	59030225	+	IGR	SNP	T	C	C	rs78323856		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160395114	160395115	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VARS	7407	broad.mit.edu	37	6	31750279	31750279	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASH1	22846	broad.mit.edu	37	14	77236310	77236310	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108184208	108184208	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108247573	108247573	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VBP1	7411	broad.mit.edu	37	X	154448519	154448519	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133020255	133020255	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133072677	133072677	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51477789	51477789	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100520071	100520071	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100832296	100832296	+	Silent	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG1	340547	broad.mit.edu	37	X	107319548	107319548	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH7P	653635	broad.mit.edu	37	1	14948	14948	+	Intron	SNP	G	A	A	rs148911281	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP5	51186	broad.mit.edu	37	X	102612685	102612685	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9501582	9501582	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177041039	177041039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100934399	100934399	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167338173	167338173	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74920408	74920408	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68364642	68364642	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI2	26100	broad.mit.edu	37	7	5266848	5266848	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	971207	971207	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54337551	54337551	+	Splice_Site	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6023587	6023587	+	Intron	DEL	G	-	-			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108641628	108641628	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10085245	10085245	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAF1	54739	broad.mit.edu	37	17	6674154	6674154	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103121	168103121	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10756124	10756124	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100344279	100344279	+	Silent	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100373017	100373017	+	Silent	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB4	57659	broad.mit.edu	37	17	7366052	7366052	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC17	51538	broad.mit.edu	37	1	31783031	31783031	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31711785	31711785	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763856	77763856	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77765146	77765146	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106456506	106456506	+	Splice_Site	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106573780	106573780	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND15	84225	broad.mit.edu	37	17	4646876	4646876	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22156216	22156216	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38108284	38108284	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152610221	152610221	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53303431	53303431	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43305759	43305759	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32332941	32332941	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354B	117608	broad.mit.edu	37	5	178309722	178309722	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58438098	58438098	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF41	7592	broad.mit.edu	37	X	47306644	47306644	+	3'UTR	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22847646	22847646	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF561	93134	broad.mit.edu	37	19	9721688	9721689	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38287064	38287064	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF574	64763	broad.mit.edu	37	19	42584008	42584008	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37647297	37647297	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585B	92285	broad.mit.edu	37	19	37698043	37698043	+	5'UTR	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59555	59555	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	63890	63890	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF610	162963	broad.mit.edu	37	19	52856958	52856958	+	Silent	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF654	55279	broad.mit.edu	37	3	88188579	88188579	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF674	641339	broad.mit.edu	37	X	46360580	46360580	+	Silent	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227828712	227828712	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63720596	63720596	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF697	90874	broad.mit.edu	37	1	120166626	120166626	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57528449	57528450	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	106262	106262	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57985635	57985636	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF833	401898	broad.mit.edu	37	19	11775607	11775609	+	Intron	DEL	AAT	-	-	rs5827133		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF83	55769	broad.mit.edu	37	19	53117519	53117519	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF85	7639	broad.mit.edu	37	19	21132839	21132839	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102189415	102189415	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56733253	56733253	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31289085	31289085	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80749428	80749428	+	5'Flank	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9707148	9707148	+	5'Flank	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22654341	22654341	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22668124	22668124	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101490051	101490051	+	5'Flank	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22471954	22471954	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23263613	23263613	+	5'Flank	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34982460	34982460	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34982654	34982654	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5495026	5495026	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20805815	20805815	+	RNA	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731049	21731049	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	36398140	36398140	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	43627249	43627249	+	5'Flank	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6929464	6929464	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104257295	104257295	+	5'Flank	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142669171	142669171	+	Intron	SNP	T	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142782336	142782336	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143241276	143241276	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21753575	21753575	+	Intron	SNP	A	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21753652	21753652	+	Intron	SNP	C	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	84115853	84115853	+	Intron	SNP	A	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	43093948	43093948	+	5'UTR	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58914267	58914267	+	Intron	SNP	C	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89977529	89977529	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90091420	90091420	+	Intron	SNP	T	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13887945	13887945	+	Intron	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190821671	190821671	+	Intron	SNP	C	T	T	rs148930558	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190822163	190822163	+	Intron	SNP	G	A	A	rs76129777	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190829269	190829269	+	Intron	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3939021	3939021	+	5'Flank	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3939101	3939101	+	5'Flank	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3939104	3939104	+	5'Flank	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4672650	4672650	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8386381	8386381	+	Intron	SNP	G	C	C			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64312245	64312245	+	Intron	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66464955	66464955	+	Intron	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	16482	16482	+	RNA	SNP	A	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122696569	122696569	+	5'Flank	SNP	G	T	T			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
