Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PLOD1	5351	broad.mit.edu	36	1	11941249	11941249	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	11941249	11941249	PLOD1	1	C	C	T	30
GRIK3	2899	broad.mit.edu	36	1	37119018	37119018	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37119018	37119018	GRIK3	1	G	G	A	47
LRRC41	10489	broad.mit.edu	36	1	46517267	46517267	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46517267	46517267	LRRC41	1	G	G	A	45
CDKN2C	1031	broad.mit.edu	36	1	51212213	51212213	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51212213	51212213	CDKN2C	1	G	G	A	37
LRRIQ3	127255	broad.mit.edu	36	1	74420873	74420873	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74420873	74420873	LRRIQ3	1	A	A	G	9
KDM5B	10765	broad.mit.edu	36	1	200981711	200981711	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	200981711	200981711	KDM5B	1	G	G	T	33
IL2RA	3559	broad.mit.edu	36	10	6103503	6103503	+	Missense_Mutation	SNP	C	C	T	rs55841382	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6103503	6103503	IL2RA	10	C	C	T	24
NLRP10	338322	broad.mit.edu	36	11	7941477	7941477	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7941477	7941477	NLRP10	11	C	C	T	30
TRIM44	54765	broad.mit.edu	36	11	35663409	35663410	+	Missense_Mutation	DNP	CG	CG	TT	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	35663409	35663410	TRIM44	11	CG	CG	TT	23
SORL1	6653	broad.mit.edu	36	11	120962233	120962233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120962233	120962233	SORL1	11	G	G	A	37
OR10G8	219869	broad.mit.edu	36	11	123406421	123406421	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	123406421	123406421	OR10G8	11	G	G	T	45
KIRREL3	84623	broad.mit.edu	36	11	125812085	125812085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125812085	125812085	KIRREL3	11	C	C	A	20
NFRKB	4798	broad.mit.edu	36	11	129245037	129245037	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	129245037	129245037	NFRKB	11	G	G	A	43
NRIP2	83714	broad.mit.edu	36	12	2814317	2814317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2814317	2814317	NRIP2	12	C	C	G	32
SLC16A7	9194	broad.mit.edu	36	12	58455155	58455155	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58455155	58455155	SLC16A7	12	A	A	G	16
POLE	5426	broad.mit.edu	36	12	131730604	131730604	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	131730604	131730604	POLE	12	G	G	A	33
FAM71D	161142	broad.mit.edu	36	14	66741163	66741163	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	66741163	66741163	FAM71D	14	C	C	T	22
OR4N4	283694	broad.mit.edu	36	15	19883929	19883929	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19883929	19883929	OR4N4	15	C	C	A	32
NOD2	64127	broad.mit.edu	36	16	49291059	49291059	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49291059	49291059	NOD2	16	G	G	C	42
EDC4	23644	broad.mit.edu	36	16	66473166	66473166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66473166	66473166	EDC4	16	G	G	A	40
KARS	3735	broad.mit.edu	36	16	74220011	74220011	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74220011	74220011	KARS	16	A	A	T	4
TP53	7157	broad.mit.edu	36	17	7517842	7517842	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7517842	7517842	TP53	17	A	A	C	2
EFNB3	1949	broad.mit.edu	36	17	7552491	7552491	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7552491	7552491	EFNB3	17	G	G	C	41
C18orf22	79863	broad.mit.edu	36	18	75899510	75899510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75899510	75899510	C18orf22	18	C	C	A	20
FAM129C	199786	broad.mit.edu	36	19	17523661	17523661	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17523661	17523661	FAM129C	19	T	T	C	50
ECH1	1891	broad.mit.edu	36	19	44013967	44013967	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44013967	44013967	ECH1	19	T	T	C	55
ZNF582	147948	broad.mit.edu	36	19	61587438	61587438	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61587438	61587438	ZNF582	19	C	C	A	32
ALLC	55821	broad.mit.edu	36	2	3707143	3707143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3707143	3707143	ALLC	2	G	G	C	46
GREB1	9687	broad.mit.edu	36	2	11672796	11672796	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11672796	11672796	GREB1	2	A	A	T	2
TTN	7273	broad.mit.edu	36	2	179337195	179337195	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	179337195	179337195	TTN	2	A	A	T	3
RBM12	10137	broad.mit.edu	36	20	33705462	33705462	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33705462	33705462	RBM12	20	T	T	C	58
ZBP1	81030	broad.mit.edu	36	20	55623407	55623407	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55623407	55623407	ZBP1	20	C	C	G	32
ITGB2	3689	broad.mit.edu	36	21	45136247	45136247	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45136247	45136247	ITGB2	21	C	C	T	25
GGTLC2	91227	broad.mit.edu	36	22	21319329	21319329	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	21319329	21319329	GGTLC2	22	A	A	T	6
CCDC157	550631	broad.mit.edu	36	22	29092086	29092086	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29092086	29092086	CCDC157	22	G	G	A	39
SETD2	29072	broad.mit.edu	36	3	47073750	47073750	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	47073750	47073750	SETD2	3	A	A	T	8
COL7A1	1294	broad.mit.edu	36	3	48600780	48600780	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	48600780	48600780	COL7A1	3	C	C	T	29
PODXL2	50512	broad.mit.edu	36	3	128862576	128862576	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128862576	128862576	PODXL2	3	G	G	A	47
GPR149	344758	broad.mit.edu	36	3	155538753	155538753	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	155538753	155538753	GPR149	3	C	C	T	19
PEX5L	51555	broad.mit.edu	36	3	181010092	181010092	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	181010092	181010092	PEX5L	3	T	T	C	57
ECE2	9718	broad.mit.edu	36	3	185489944	185489944	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	185489944	185489944	ECE2	3	G	G	A	39
PCDHB12	56124	broad.mit.edu	36	5	140570171	140570171	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140570171	140570171	PCDHB12	5	T	T	G	55
ABLIM3	22885	broad.mit.edu	36	5	148607627	148607627	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148607627	148607627	ABLIM3	5	C	C	A	28
OR2W1	26692	broad.mit.edu	36	6	29120568	29120568	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29120568	29120568	OR2W1	6	G	G	T	37
MED23	9439	broad.mit.edu	36	6	131950541	131950541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131950541	131950541	MED23	6	C	C	T	18
TAAR8	83551	broad.mit.edu	36	6	132915641	132915641	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	132915641	132915641	TAAR8	6	C	C	T	28
RSPH3	83861	broad.mit.edu	36	6	159321911	159321911	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	159321911	159321911	RSPH3	6	C	C	T	31
CRHR2	1395	broad.mit.edu	36	7	30661826	30661826	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	30661826	30661826	CRHR2	7	C	C	T	25
MOGAT3	346606	broad.mit.edu	36	7	100625957	100625957	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100625957	100625957	MOGAT3	7	G	G	T	44
CCDC136	64753	broad.mit.edu	36	7	128233162	128233162	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128233162	128233162	CCDC136	7	C	C	T	31
ATG9B	285973	broad.mit.edu	36	7	150349221	150349221	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150349221	150349221	ATG9B	7	A	A	T	7
BMP1	649	broad.mit.edu	36	8	22120416	22120416	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22120416	22120416	BMP1	8	A	A	T	6
ZFHX4	79776	broad.mit.edu	36	8	77780713	77780713	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77780713	77780713	ZFHX4	8	G	G	T	42
MTBP	27085	broad.mit.edu	36	8	121600187	121600187	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	121600187	121600187	MTBP	8	T	T	C	60
SMC5	23137	broad.mit.edu	36	9	72087265	72087265	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	72087265	72087265	SMC5	9	A	A	T	9
TTF1	7270	broad.mit.edu	36	9	134253418	134253418	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134253418	134253418	TTF1	9	C	C	A	32
FAM47A	158724	broad.mit.edu	36	X	34058268	34058268	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	34058268	34058268	FAM47A	23	C	C	T	31
PAPPA2	60676	broad.mit.edu	36	1	175027208	175027217	+	Frame_Shift_Del	DEL	GTGGAGTACA	-	GTGGAGTACA	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	175027208	175027217	PAPPA2	1	GTGGAGTACA	-	GTGGAGTACA	48
ETFDH	2110	broad.mit.edu	36	4	159847245	159847254	+	Frame_Shift_Del	DEL	CGGCTCAAGC	-	CGGCTCAAGC	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	159847245	159847254	ETFDH	4	CGGCTCAAGC	-	CGGCTCAAGC	19
PCDHGC3	5098	broad.mit.edu	36	5	140836006	140836014	+	In_Frame_Del	DEL	GTGGGCAAC	-	GTGGGCAAC	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	140836006	140836014	PCDHGC3	5	GTGGGCAAC	-	GTGGGCAAC	48
TRIM27	5987	broad.mit.edu	36	6	28980344	28980344	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-24-2290-01	TCGA-24-2290-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	28980344	28980344	TRIM27	6	A	-	A	13
