Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AADAT	51166	genome.wustl.edu	37	4	170991750	170991750	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	4	170991750	170991750	G	A	SNP	AADAT	NM_016228.3	human	genbank	58_37c	-1	reviewed	silent	c.708	p.L236	1.000	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases	-	no_errors
ACSM2B	348158	genome.wustl.edu	37	16	20576133	20576133	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	16	20576133	20576133	G	T	SNP	ACSM2B	NM_001105069.1	human	genbank	58_37c	-1	validated	missense	c.35	p.T12N	0.002	superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ANKRD20B	729171	genome.wustl.edu	37	2	95522747	95522747	+	RNA	SNP	C	C	G	rs10874467	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	95522747	95522747	C	G	SNP	ANKRD20B	NR_003366.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
C19orf30	284424	genome.wustl.edu	37	19	4772464	4772464	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	19	4772464	4772464	G	A	SNP	C19orf30	NR_027148.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
CADPS	8618	genome.wustl.edu	37	3	62385241	62385241	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	3	62385241	62385241	C	T	SNP	CADPS	NM_003716.3	human	genbank	58_37c	-1	reviewed	missense	c.3902	p.R1301Q	1.000	NULL	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
CCDC33	80125	genome.wustl.edu	37	15	74622637	74622637	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	15	74622637	74622637	C	T	SNP	CCDC33	NM_025055.3	human	genbank	58_37c	+1	validated	silent	c.1398	p.R466	0.000	NULL	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CEP164	22897	genome.wustl.edu	37	11	117252486	117252487	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	11	117252486	117252487	-	C	INS	CEP164	NM_014956.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1479_1480	p.P494fs	0.299:0.293	NULL	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain	-	no_errors
ENSG00000246575	0	genome.wustl.edu	37	2	85543064	85543064	+	RNA	SNP	T	T	C	rs4446071	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	85543064	85543064	T	C	SNP	ENSG00000246575	ENST00000501107	human	ensembl	58_37c	+1	known	intronic	c.NULL	NULL	0.000	-	-	-	no_coding_region:pseudogene
ENSG00000247565	0	genome.wustl.edu	37	3	9884997	9884997	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	3	9884997	9884997	G	A	SNP	RPUSD3	ENST00000460909	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-9884997	NULL	0.000	-	-	-	no_coding_region
HUWE1	10075	genome.wustl.edu	37	X	53570824	53570824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	X	53570824	53570824	C	T	SNP	HUWE1	NM_031407.4	human	genbank	58_37c	-1	reviewed	missense	c.11357	p.R3786Q	1.000	NULL	HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat	-	no_errors
HVCN1	84329	genome.wustl.edu	37	12	111089194	111089194	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	12	111089194	111089194	T	G	SNP	HVCN1	NM_001040107.1	human	genbank	58_37c	-1	validated	missense	c.471	p.K157N	0.277	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels	-	no_errors
LOC645954	645954	genome.wustl.edu	37	10	31000309	31000310	+	RNA	INS	-	-	T	rs67396230	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	10	31000309	31000310	-	T	INS	LOC645954	XR_017086.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors
MUC2	4583	genome.wustl.edu	37	11	1093066	1093066	+	Missense_Mutation	SNP	C	C	A	rs56365200	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	11	1093066	1093066	C	A	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.4885	p.P1629T	0.001	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
NCKAP1	10787	genome.wustl.edu	37	2	183848015	183848015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	183848015	183848015	T	C	SNP	NCKAP1	NM_205842.1	human	genbank	58_37c	-1	validated	missense	c.1118	p.K373R	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NCOA2	10499	genome.wustl.edu	37	8	71060629	71060629	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	8	71060629	71060629	G	A	SNP	NCOA2	NM_006540.2	human	genbank	58_37c	-1	validated	silent	c.2484	p.G828	0.974	NULL	HMMSmart_PAS,HMMSmart_HLH,HMMSmart_PAC,superfamily_Nuc_recept_coact,HMMPfam_DUF1518,superfamily_HLH_basic,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_SSF55785	-	no_errors
NPHP4	261734	genome.wustl.edu	37	1	5987774	5987774	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	1	5987774	5987774	G	A	SNP	NPHP4	NM_015102.2	human	genbank	58_37c	-1	reviewed	missense	c.1376	p.T459M	0.000	NULL	NULL	-	no_errors
PTCH1	5727	genome.wustl.edu	37	9	98211487	98211487	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	9	98211487	98211487	G	A	SNP	PTCH1	NM_000264.3	human	genbank	58_37c	-1	reviewed	missense	c.3668	p.S1223L	0.998	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
RBM19	9904	genome.wustl.edu	37	12	114352823	114352823	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	12	114352823	114352823	G	A	SNP	RBM19	NM_016196.3	human	genbank	58_37c	-1	reviewed	missense	c.2509	p.R837W	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
SIPA1L1	26037	genome.wustl.edu	37	14	72138130	72138130	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	14	72138130	72138130	A	G	SNP	SIPA1L1	NM_015556.1	human	genbank	58_37c	+1	provisional	silent	c.2550	p.G850	1.000	NULL	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
SLC11A1	6556	genome.wustl.edu	37	2	219249939	219249939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	219249939	219249939	G	A	SNP	SLC11A1	NM_000578.3	human	genbank	58_37c	+1	reviewed	missense	c.343	p.V115M	1.000	HMMPfam_Nramp	HMMPfam_Nramp	-	no_errors
SLC17A4	10050	genome.wustl.edu	37	6	25769214	25769214	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	6	25769214	25769214	T	C	SNP	SLC17A4	NM_005495.2	human	genbank	58_37c	+1	validated	silent	c.93	p.G31	0.058	superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC36A3	285641	genome.wustl.edu	37	5	150682787	150682787	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	5	150682787	150682787	C	A	SNP	SLC36A3	NM_001145017.1	human	genbank	58_37c	-1	validated	splice_site	c.128+1	e1+1	0.851	-	-	-	no_errors
STEAP3	55240	genome.wustl.edu	37	2	120012348	120012348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	120012348	120012348	C	T	SNP	STEAP3	NM_182915.2	human	genbank	58_37c	+1	validated	missense	c.1139	p.T380M	0.905	HMMPfam_Ferric_reduct	HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113168951	113168951	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	9	113168951	113168951	G	C	SNP	SVEP1	NM_153366.3	human	genbank	58_37c	-1	validated	missense	c.8929	p.P2977A	0.982	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Pentaxin,HMMSmart_SM00159,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_HYR,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
TTC7A	57217	genome.wustl.edu	37	2	47278894	47278894	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	47278894	47278894	G	A	SNP	TTC7A	NM_020458.2	human	genbank	58_37c	+1	validated	missense	c.2027	p.R676Q	0.024	superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
YSK4	80122	genome.wustl.edu	37	2	135745540	135745540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	2	135745540	135745540	C	T	SNP	YSK4	NM_025052.3	human	genbank	58_37c	-1	validated	missense	c.902	p.C301Y	0.001	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ZNF331	55422	genome.wustl.edu	37	19	54081068	54081068	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0ER-01A-21W-A050-09	TCGA-A2-A0ER-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31ed187e-9bfe-4ca3-8cbb-10c1e0184331	2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a	19	54081068	54081068	G	A	SNP	ZNF331	NM_001079906.1	human	genbank	58_37c	+1	validated	silent	c.1254	p.K418	0.897	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
