Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AMOTL1	0	genome.wustl.edu	37	11	94533105	94533105	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	94533105	94533105	T	A	SNP	AMOTL1	NM_130847.2	human	genbank	58_37c	+1	reviewed	missense	c.749	p.L250Q	1.000	NULL	NULL	-	no_errors
ATP6AP1	0	genome.wustl.edu	37	X	153657488	153657488	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	153657488	153657488	C	A	SNP	ATP6AP1	NM_001183.4	human	genbank	58_37c	+1	reviewed	missense	c.256	p.P86T	0.983	HMMPfam_ATP-synt_S1	HMMPfam_ATP-synt_S1	-	no_errors
BEX4	0	genome.wustl.edu	37	X	102471238	102471238	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	102471238	102471238	G	A	SNP	BEX4	NM_001080425.2	human	genbank	58_37c	+1	validated	missense	c.157	p.G53R	0.000	HMMPfam_BEX	HMMPfam_BEX	-	no_errors
CGB1	0	genome.wustl.edu	37	19	49540007	49540007	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	19	49540007	49540007	A	G	SNP	CGB1	ENST00000391869	human	ensembl	58_37c	-1	known	missense	c.11	p.F4S	0.104	NULL	HMMSmart_SM00068,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_Cystine-knot cytokines	-	no_errors
CGB8	0	genome.wustl.edu	37	19	49551573	49551573	+	Silent	SNP	C	C	T	rs151241744	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	19	49551573	49551573	C	T	SNP	CGB8	NM_033183.2	human	genbank	58_37c	-1	reviewed	silent	c.72	p.P24	0.573	superfamily_Cystine-knot cytokines	HMMSmart_SM00068,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_Cystine-knot cytokines	-	no_errors
CIDEB	0	genome.wustl.edu	37	14	24775709	24775710	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775709	24775710	-	T	INS	CIDEB	NM_014430.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.207_206	p.N70fs	0.974:1.000	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains	-	no_errors
CIDEB	0	genome.wustl.edu	37	14	24775714	24775715	+	Missense_Mutation	DNP	GT	GT	CC	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775714	24775715	GT	CC	DNP	CIDEB	NM_014430.2	human	genbank	58_37c	-1	validated	missense	c.202_201	p.L68V	1.000:1.000	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains	-	no_errors
COL6A5	0	genome.wustl.edu	37	3	130159404	130159407	+	Frame_Shift_Del	DEL	CTAT	CTAT	-	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	CTAT	CTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	3	130159404	130159407	CTAT	-	DEL	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	frame_shift_del	c.6222_6225	p.Y2075fs	0.000:0.000:0.004:0.000	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
DCDC5	0	genome.wustl.edu	37	11	30903588	30903588	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	30903588	30903588	A	C	SNP	DCDC5	ENST00000303697	human	ensembl	58_37c	-1	known	splice_site	c.1222+2	e8+2	0.000	-	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000198804	0	genome.wustl.edu	37	MT	6664	6664	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	MT	6664	6664	T	C	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.761	p.I254T	NULL	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000198840	0	genome.wustl.edu	37	MT	10233	10233	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	MT	10233	10233	G	C	SNP	ENSG00000198840	ENST00000361227	human	ensembl	58_37c	+1	known	missense	c.175	p.A59P	NULL	HMMPfam_Oxidored_q4	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ETV5	0	genome.wustl.edu	37	3	185783693	185783693	+	Missense_Mutation	SNP	A	A	T	rs139774137	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	3	185783693	185783693	A	T	SNP	ETV5	NM_004454.2	human	genbank	58_37c	-1	validated	missense	c.819	p.H273Q	0.076	HMMPfam_ETS_PEA3_N	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_ETS_PEA3_N,superfamily_SSF46785	-	no_errors
FOXD4L3	0	genome.wustl.edu	37	9	70918829	70918829	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	70918829	70918829	A	T	SNP	FOXD4L3	NM_199135.4	human	genbank	58_37c	+1	validated	missense	c.962	p.D321V	0.110	NULL	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_SSF46785	-	no_errors
GBP1	0	genome.wustl.edu	37	1	89525988	89525988	+	Silent	SNP	C	C	T	rs149168400	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	89525988	89525988	C	T	SNP	GBP1	NM_002053.2	human	genbank	58_37c	-1	validated	silent	c.210	p.T70	0.494	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HNRNPUL2	0	genome.wustl.edu	37	11	62487502	62487502	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	62487502	62487502	C	T	SNP	HNRNPUL2	NM_001079559.1	human	genbank	58_37c	-1	provisional	silent	c.1773	p.E591	1.000	superfamily_SSF52540	HMMPfam_SAP,HMMSmart_SAP,HMMPfam_SPRY,HMMSmart_SPRY,superfamily_SSF52540,superfamily_SSF68906	-	no_errors
IBTK	0	genome.wustl.edu	37	6	82924534	82924534	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	82924534	82924534	A	G	SNP	IBTK	NM_015525.2	human	genbank	58_37c	-1	reviewed	silent	c.1614	p.I538	1.000	superfamily_POZ domain	HMMSmart_SM00225,HMMPfam_RCC1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_RCC1/BLIP-II,superfamily_POZ domain,HMMPfam_BTB	-	no_errors
ITGA4	0	genome.wustl.edu	37	2	182339788	182339788	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	2	182339788	182339788	A	G	SNP	ITGA4	NM_000885.4	human	genbank	58_37c	+1	reviewed	missense	c.421	p.I141V	0.138	superfamily_Integrin alpha N-terminal domain	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
KDM2A	0	genome.wustl.edu	37	11	66995613	66995613	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	66995613	66995613	C	T	SNP	KDM2A	NM_012308.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1063	p.Q355*	1.000	NULL	HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,PatternScan_2FE2S_FER_1,HMMSmart_SM00367,HMMPfam_JmjC,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,superfamily_RNI-like	-	no_errors
LOC100288795	0	genome.wustl.edu	37	17	4544978	4544979	+	In_Frame_Ins	INS	-	-	AGA	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	17	4544978	4544979	-	AGA	INS	LOC100288795	XM_002343502.1	human	genbank	58_37c	+1	model	in_frame_ins	c.890_891	p.299in_frame_insE	0.000:0.000	NULL	NULL	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	23685826	23685828	TCT	-	DEL	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_del	c.1585_1583	p.K528in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
LRP1	0	genome.wustl.edu	37	12	57589072	57589072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	12	57589072	57589072	C	T	SNP	LRP1	NM_002332.2	human	genbank	58_37c	+1	reviewed	missense	c.8327	p.P2776L	1.000	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
MAP2K4	0	genome.wustl.edu	37	17	12016616	12016616	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	17	12016616	12016616	G	T	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	missense	c.752	p.S251I	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MCM9	0	genome.wustl.edu	37	6	119245057	119245057	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	119245057	119245057	G	A	SNP	MCM9	NM_153255.3	human	genbank	58_37c	-1	reviewed	silent	c.540	p.S180	0.625	HMMSmart_MCM,superfamily_Nucleic_acid_OB	HMMPfam_MCM,HMMSmart_MCM,superfamily_Nucleic_acid_OB,superfamily_SSF52540	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17087542	17087546	+	Splice_Site	DEL	GTGCT	GTGCT	-	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	GTGCT	GTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	17087542	17087546	GTGCT	-	DEL	MST1P9	ENST00000389184	human	ensembl	58_37c	-1	known	splice_site_del	c.NULL	NULL	0.993:0.992:0.992:0.992:0.993	-	-	-	no_coding_region:pseudogene
MTMR15	0	genome.wustl.edu	37	15	31206233	31206233	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	31206233	31206233	T	A	SNP	MTMR15	NM_014967.4	human	genbank	58_37c	+1	reviewed	missense	c.1750	p.F584I	1.000	NULL	HMMSmart_SM00734,HMMPfam_VRR_NUC	-	no_errors
MYO6	0	genome.wustl.edu	37	6	76538265	76538265	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	76538265	76538265	A	T	SNP	MYO6	NM_004999.3	human	genbank	58_37c	+1	reviewed	missense	c.196	p.M66L	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYOF	0	genome.wustl.edu	37	10	95085598	95085598	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	10	95085598	95085598	C	T	SNP	MYOF	NM_013451.3	human	genbank	58_37c	-1	reviewed	silent	c.5256	p.Q1752	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors
OR52B4	0	genome.wustl.edu	37	11	4389301	4389301	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	4389301	4389301	G	A	SNP	OR52B4	NM_001005161.3	human	genbank	58_37c	-1	validated	silent	c.225	p.L75	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
POLR2J3	0	genome.wustl.edu	37	7	102212939	102212939	+	Missense_Mutation	SNP	G	G	C	rs139049967	byFrequency	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	7	102212939	102212939	G	C	SNP	POLR2J3	NM_001097615.1	human	genbank	58_37c	-1	reviewed	missense	c.30	p.F10L	1.000	superfamily_RBP11-like subunits of RNA polymerase	PatternScan_RNA_POL_L_13KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L	-	no_errors
PPARGC1A	0	genome.wustl.edu	37	4	23816043	23816043	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	4	23816043	23816043	A	T	SNP	PPARGC1A	NM_013261.3	human	genbank	58_37c	-1	reviewed	missense	c.1063	p.Y355N	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
PRDX5	0	genome.wustl.edu	37	11	64087239	64087239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	64087239	64087239	G	A	SNP	PRDX5	NM_012094.3	human	genbank	58_37c	+1	reviewed	missense	c.205	p.E69K	1.000	superfamily_Thioredoxin-like,HMMPfam_Redoxin	superfamily_Thioredoxin-like,HMMPfam_Redoxin	-	no_errors
RXRA	0	genome.wustl.edu	37	9	137309085	137309085	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	137309085	137309085	C	T	SNP	RXRA	NM_002957.4	human	genbank	58_37c	+1	reviewed	missense	c.692	p.P231L	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
S100P	0	genome.wustl.edu	37	4	6695772	6695774	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	4	6695772	6695774	AGA	-	DEL	S100P	NM_005980.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.113_115	p.K39in_frame_del	0.995:0.995:0.994	HMMPfam_S_100,superfamily_SSF47473	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
SERPINA12	0	genome.wustl.edu	37	14	94964133	94964133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	94964133	94964133	A	G	SNP	SERPINA12	NM_173850.2	human	genbank	58_37c	-1	provisional	missense	c.602	p.V201A	0.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SH3BGRL	0	genome.wustl.edu	37	X	80552725	80552725	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	80552725	80552725	G	A	SNP	SH3BGRL	NM_003022.2	human	genbank	58_37c	+1	validated	silent	c.344	p.*115	0.982	NULL	HMMPfam_SH3BGR,superfamily_Thioredoxin-like	-	no_errors
SLC22A16	0	genome.wustl.edu	37	6	110763635	110763635	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	110763635	110763635	C	A	SNP	SLC22A16	NM_033125.2	human	genbank	58_37c	-1	provisional	missense	c.995	p.G332V	0.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC9A4	0	genome.wustl.edu	37	2	103095467	103095467	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	2	103095467	103095467	C	T	SNP	SLC9A4	NM_001011552.3	human	genbank	58_37c	+1	validated	silent	c.426	p.G142	0.002	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
SPATA21	0	genome.wustl.edu	37	1	16730302	16730302	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	16730302	16730302	G	C	SNP	SPATA21	NM_198546.1	human	genbank	58_37c	-1	provisional	silent	c.921	p.P307	0.995	NULL	PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
SUGT1L1	0	genome.wustl.edu	37	13	41373529	41373529	+	RNA	SNP	G	G	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	13	41373529	41373529	G	T	SNP	SUGT1L1	NR_003365.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.003	-	-	-	pseudogene
TM6SF2	0	genome.wustl.edu	37	19	19375576	19375577	+	Missense_Mutation	DNP	GC	GC	AA	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	19	19375576	19375577	GC	AA	DNP	TM6SF2	NM_001001524.2	human	genbank	58_37c	-1	validated	missense	c.1031_1030	p.A344L	0.078:0.078	NULL	NULL	-	no_errors
USP8	0	genome.wustl.edu	37	15	50769138	50769138	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	50769138	50769138	T	C	SNP	USP8	NM_001128610.1	human	genbank	58_37c	+1	validated	silent	c.942	p.N314	1.000	superfamily_Rhodanese-like	HMMPfam_UCH,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_Rhodanese-like,HMMPfam_DUF1873,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VCX3B	0	genome.wustl.edu	37	X	8433833	8433833	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	8433833	8433833	C	T	SNP	VCX3B	NM_001001888.2	human	genbank	58_37c	+1	reviewed	silent	c.150	p.R50	0.000	NULL	NULL	-	no_errors
VCX3B	0	genome.wustl.edu	37	X	8434449	8434449	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	8434449	8434449	G	A	SNP	VCX3B	ENST00000440654	human	ensembl	58_37c	+1	known	silent	c.375	p.P125	0.004	NULL	NULL	-	no_errors
YBX1	0	genome.wustl.edu	37	1	43166508	43166508	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	43166508	43166508	A	G	SNP	YBX1	NM_004559.3	human	genbank	58_37c	+1	validated	missense	c.797	p.N266S	1.000	NULL	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK	-	no_errors
ZAN	0	genome.wustl.edu	37	7	100364159	100364163	+	Frame_Shift_Del	DEL	GTGGT	GTGGT	-	novel	unknown	TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	GTGGT	GTGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	7	100364159	100364163	GTGGT	-	DEL	ZAN	NM_003386.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.4482_4486	p.W1495fs	0.335:0.986:1.000:0.999:0.871	HMMSmart_SM00215	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
