Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SESN3	143686	hgsc.bcm.edu	36	11	94562761	94562762	+	Frame_Shift_Ins	INS	-	-	TCTA	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	-	-	-	TCTA	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144665	exon4	c.355_356insTAGA	p.H119_Q120delinsX	.	.	.
CUX1	1523	hgsc.bcm.edu	36	7	101712781	101712781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181500	exon22	c.G1954A	p.A652T	.	.	.
FBXL13	222235	hgsc.bcm.edu	36	7	102354048	102354048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001111038	exon10	c.A787G	p.M263V	.	.	.
EPHA1	2041	hgsc.bcm.edu	36	7	142798942	142798942	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005232	exon17	c.T2745C	p.Y915Y	.	.	.
INHBA	3624	hgsc.bcm.edu	36	7	41695919	41695919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002192	exon3	c.C1135T	p.R379W	.	.	.
KIAA0406	9675	hgsc.bcm.edu	36	20	36074808	36074808	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014657	exon3	c.G825C	p.R275S	.	.	.
TBC1D20	128637	hgsc.bcm.edu	36	20	367798	367798	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144628	exon7	c.C910T	p.P304S	.	.	.
SLC13A3	64849	hgsc.bcm.edu	36	20	44654527	44654527	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022829	exon6	c.C843T	p.F281F	.	.	.
CHRNA4	1137	hgsc.bcm.edu	36	20	61452380	61452380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000744	exon5	c.C827T	p.T276M	.	.	.
SYN3	8224	hgsc.bcm.edu	36	22	31657411	31657411	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135774	exon4	c.A425G	p.D142G	.	.	.
SLC5A5	6528	hgsc.bcm.edu	36	19	17853837	17853837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000453	exon9	c.G1127A	p.R376Q	.	.	.
NCAN	1463	hgsc.bcm.edu	36	19	19217210	19217210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004386	exon13	c.G3581A	p.R1194H	.	.	.
DNM2	1785	hgsc.bcm.edu	36	19	10801995	10801995	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190716	exon20	c.G2484A	p.P828P	DNM2,central_nervous_system,brain,Substitution - coding silent,0	.	.
NRAS	4893	hgsc.bcm.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
SETDB1	9869	hgsc.bcm.edu	36	1	149189803	149189803	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145415	exon13	c.G1826A	p.R609Q	.	.	.
C1orf116	79098	hgsc.bcm.edu	36	1	205267556	205267556	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_023938	exon2	c.G11C	p.R4T	.	.	.
SIK2	23235	hgsc.bcm.edu	36	11	111076881	111076881	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015191	exon5	c.C540T	p.P180P	.	.	.
ZP1	22917	hgsc.bcm.edu	36	11	60395148	60395148	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207341	exon5	c.C969T	p.F323F	.	.	.
DENND5A	23258	hgsc.bcm.edu	36	11	9148029	9148029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015213	exon10	c.C2101T	p.R701W	.	.	.
SESN1	27244	hgsc.bcm.edu	36	6	109415452	109415452	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014454	exon10	c.C1644A	p.R548R	.	.	.
ATXN1	6310	hgsc.bcm.edu	36	6	16435614	16435614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000332	exon8	c.C907T	p.R303W	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169388300	169388300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003247	exon5	c.G611A	p.G204D	.	.	.
NKAPL	222698	hgsc.bcm.edu	36	6	28335553	28335553	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007531	exon1	c.A425G	p.K142R	.	.	.
PGC	5225	hgsc.bcm.edu	36	6	41818075	41818075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166424	exon5	c.C578T	p.T193I	.	.	.
BMP6	654	hgsc.bcm.edu	36	6	7790399	7790399	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001718	exon2	c.G692A	p.R231H	.	.	.
ELOVL4	6785	hgsc.bcm.edu	36	6	80683290	80683290	+	Silent	SNP	C	C	T	rs17853840	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022726	exon6	c.G699A	p.T233T	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519227	7519227	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.T428C	p.V143A	TP53,lung,NS,Substitution - Nonsense,+2	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	20883545	20883545	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017539	exon53	c.G9162T	p.W3054C	.	.	.
L3MBTL4	91133	hgsc.bcm.edu	36	18	6161929	6161929	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173464	exon13	c.G994A	p.G332S	.	.	.
GALNTL2	117248	hgsc.bcm.edu	36	3	16229139	16229139	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_054110	exon6	c.C1257T	p.Y419Y	.	.	.
HTR3D	200909	hgsc.bcm.edu	36	3	185238624	185238624	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001163646	exon6	c.C782T	p.A261V	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13210968	13210968	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148894	exon10	c.C6654T	p.L2218L	.	.	.
FAAH2	158584	hgsc.bcm.edu	36	X	57374788	57374788	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174912	exon4	c.C445T	p.R149C	.	.	.
ZEB2	9839	hgsc.bcm.edu	36	2	144878998	144878998	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001171653	exon4	c.G395A	p.R132H	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169885550	169885550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004525	exon2	c.C170T	p.A57V	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210282980	210282980	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031847	exon9	c.T762A	p.S254S	.	.	.
SFTPB	6439	hgsc.bcm.edu	36	2	85746291	85746291	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198843	exon6	c.C567T	p.V189V	.	.	.
ACO1	48	hgsc.bcm.edu	36	9	32409050	32409050	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002197	exon7	c.G673A	p.E225K	.	.	.
SECISBP2	79048	hgsc.bcm.edu	36	9	91137666	91137666	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024077	exon6	c.C825T	p.N275N	.	.	.
PNPLA7	375775	hgsc.bcm.edu	36	9	139520312	139520312	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152286	exon12	c.C1195T	p.R399C	.	.	.
RXFP2	122042	hgsc.bcm.edu	36	13	31238101	31238101	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166058	exon5	c.A434C	p.K145T	.	.	.
ZEB1	6935	hgsc.bcm.edu	36	10	31850530	31850530	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001174093	exon6	c.G2201T	p.S734I	.	.	.
CRTAC1	55118	hgsc.bcm.edu	36	10	99686022	99686022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018058	exon3	c.G316A	p.A106T	.	.	.
CDH10	1008	hgsc.bcm.edu	36	5	24523706	24523706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006727	exon12	c.C2190T	p.Y730Y	.	.	.
DEPDC1B	55789	hgsc.bcm.edu	36	5	60018668	60018668	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018369	exon2	c.C192T	p.G64G	.	.	.
PDE8B	8622	hgsc.bcm.edu	36	5	76660586	76660586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003719	exon4	c.C598T	p.R200W	.	.	.
