Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFF3	0	genome.wustl.edu	37	2	100170901	100170901	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	100170901	100170901	G	A	SNP	AFF3	NM_001025108.1	human	genbank	58_37c	-1	reviewed	missense	c.3506	p.P1169L	0.994	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ASB5	0	genome.wustl.edu	37	4	177190238	177190238	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	177190238	177190238	G	C	SNP	ASB5	NM_080874.2	human	genbank	58_37c	-1	reviewed	missense	c.22	p.R8G	0.997	NULL	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
CACNA1F	0	genome.wustl.edu	37	X	49082871	49082871	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	X	49082871	49082871	A	T	SNP	CACNA1F	NM_005183.2	human	genbank	58_37c	-1	reviewed	missense	c.1496	p.L499Q	0.691	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CLEC18A	0	genome.wustl.edu	37	16	69996928	69996928	+	Missense_Mutation	SNP	G	G	A	rs616457	byCluster	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	16	69996928	69996928	G	A	SNP	CLEC18A	NM_182619.2	human	genbank	58_37c	+1	validated	missense	c.1261	p.D421N	1.000	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	HMMSmart_SM00198,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SCP,superfamily_PR-1-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CLSTN3	0	genome.wustl.edu	37	12	7293852	7293852	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	7293852	7293852	G	A	SNP	CLSTN3	NM_014718.3	human	genbank	58_37c	+1	validated	silent	c.1338	p.E446	0.997	superfamily_ConA_like_lec_gl	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_ConA_like_lec_gl,superfamily_Cadherin	-	no_errors
CMYA5	0	genome.wustl.edu	37	5	79033437	79033437	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	5	79033437	79033437	G	T	SNP	CMYA5	NM_153610.3	human	genbank	58_37c	+1	validated	missense	c.8849	p.G2950V	1.000	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
DNAH17	0	genome.wustl.edu	37	17	76501415	76501415	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	17	76501415	76501415	T	G	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	missense	c.4904	p.E1635A	1.000	HMMPfam_DHC_N2	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DPY19L4	0	genome.wustl.edu	37	8	95796032	95796032	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	8	95796032	95796032	T	A	SNP	DPY19L4	NM_181787.2	human	genbank	58_37c	+1	validated	splice_site	c.1848+2	e17+2	1.000	-	-	-	no_errors
DYRK3	0	genome.wustl.edu	37	1	206810308	206810308	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	206810308	206810308	A	G	SNP	DYRK3	NM_001004023.1	human	genbank	58_37c	+1	reviewed	silent	c.12	p.K4	0.001	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
FGF6	0	genome.wustl.edu	37	12	4554416	4554416	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	4554416	4554416	G	A	SNP	FGF6	NM_020996.1	human	genbank	58_37c	-1	reviewed	silent	c.321	p.S107	1.000	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like	-	no_errors
FRYL	0	genome.wustl.edu	37	4	48542474	48542474	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	48542474	48542474	A	C	SNP	FRYL	NM_015030.1	human	genbank	58_37c	-1	validated	missense	c.6191	p.L2064R	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
GGT1	0	genome.wustl.edu	37	22	25023893	25023893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	22	25023893	25023893	G	A	SNP	GGT1	NM_001032364.2	human	genbank	58_37c	+1	reviewed	missense	c.1283	p.S428N	0.998	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
GPAT2	0	genome.wustl.edu	37	2	96690428	96690428	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	96690428	96690428	C	T	SNP	GPAT2	ENST00000335448	human	ensembl	58_37c	-1	known	silent	c.1425	p.V475	0.991	NULL	HMMPfam_Acyltransferase,HMMSmart_SM00563	-	no_errors
KIF1B	0	genome.wustl.edu	37	1	10386254	10386254	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	10386254	10386254	A	G	SNP	KIF1B	NM_015074.3	human	genbank	58_37c	+1	reviewed	missense	c.2623	p.T875A	1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_Kinesin,HMMSmart_SM00129,HMMPfam_PH,HMMSmart_SM00233,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KRTAP10-7	0	genome.wustl.edu	37	21	46020656	46020670	+	In_Frame_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	21	46020656	46020670	CTGCTGCGCCCCCAG	-	DEL	KRTAP10-7	ENST00000380102	human	ensembl	58_37c	+1	known	in_frame_del	c.135_149	p.PSCCA49in_frame_del	0.132:0.261:0.989:1.000:1.000:0.990:0.713:0.752:0.994:0.999:1.000:1.000:1.000:0.996:0.995	NULL	HMMPfam_Keratin_B2	-	no_errors
KRTAP23-1	0	genome.wustl.edu	37	21	31720857	31720857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	21	31720857	31720857	C	T	SNP	KRTAP23-1	NM_181624.1	human	genbank	58_37c	-1	provisional	missense	c.68	p.G23D	0.000	NULL	NULL	-	no_errors
KRTAP4-6	0	genome.wustl.edu	37	17	39296361	39296361	+	Missense_Mutation	SNP	A	A	G	rs146882220	byCluster	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	17	39296361	39296361	A	G	SNP	KRTAP4-6	ENST00000345847	human	ensembl	58_37c	-1	known	missense	c.379	p.S127P	0.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LAMA1	0	genome.wustl.edu	37	18	6959369	6959369	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	18	6959369	6959369	C	T	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	silent	c.7749	p.A2583	0.001	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454734	66454734	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	9	66454734	66454734	C	T	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	missense	c.221	p.G74E	0.013	NULL	NULL	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195508385	195508385	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	3	195508385	195508385	C	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.9682	p.G3228C	0.002	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195515194	195515194	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	3	195515194	195515194	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.3257	p.T1086S	0.009	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16902844	16902844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	16902844	16902844	G	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2037	p.D679E	0.001	NULL	HMMPfam_DUF1220	-	no_errors
OTUD4	0	genome.wustl.edu	37	4	146059245	146059245	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	4	146059245	146059245	C	T	SNP	OTUD4	NM_001102653.1	human	genbank	58_37c	-1	reviewed	silent	c.2487	p.L829	1.000	NULL	HMMPfam_OTU,superfamily_SSF54001	-	no_errors
PCDHA4	0	genome.wustl.edu	37	5	140188293	140188293	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	5	140188293	140188293	C	T	SNP	PCDHA4	NM_018907.2	human	genbank	58_37c	+1	reviewed	silent	c.1521	p.Y507	0.999	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
POTEF	0	genome.wustl.edu	37	2	130832835	130832835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	2	130832835	130832835	C	T	SNP	POTEF	NM_001099771.2	human	genbank	58_37c	-1	validated	missense	c.2210	p.R737H	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_SSF53067	-	no_errors
RBBP5	0	genome.wustl.edu	37	1	205073004	205073004	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	1	205073004	205073004	G	A	SNP	RBBP5	NM_005057.2	human	genbank	58_37c	-1	reviewed	missense	c.503	p.T168M	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
RIMBP3	0	genome.wustl.edu	37	22	20457383	20457383	+	Missense_Mutation	SNP	G	G	T	rs2242314	byCluster	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	22	20457383	20457383	G	T	SNP	RIMBP3	NM_015672.1	human	genbank	58_37c	-1	validated	missense	c.3919	p.P1307T	0.003	NULL	HMMSmart_SM00326,superfamily_SH3-domain,superfamily_Fibronectin type III,HMMPfam_SH3_2,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
RRN3P1	0	genome.wustl.edu	37	16	21817457	21817457	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	16	21817457	21817457	G	A	SNP	RRN3P1	NR_003370.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.981	-	-	-	pseudogene
RTL1	0	genome.wustl.edu	37	14	101349027	101349027	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	14	101349027	101349027	T	G	SNP	RTL1	NM_001134888.2	human	genbank	58_37c	-1	reviewed	missense	c.2099	p.Y700S	0.659	superfamily_DNA/RNA polymerases	HMMPfam_Retrotrans_gag,superfamily_Acid proteases,superfamily_DNA/RNA polymerases	-	no_errors
SLC9A5	0	genome.wustl.edu	37	16	67289834	67289834	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	16	67289834	67289834	G	A	SNP	SLC9A5	NM_004594.2	human	genbank	58_37c	+1	validated	splice_site	c.911+1	e5+1	1.000	-	-	-	no_errors
SYNPO2L	0	genome.wustl.edu	37	10	75406951	75406951	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	10	75406951	75406951	A	G	SNP	SYNPO2L	NM_001114133.1	human	genbank	58_37c	-1	validated	missense	c.2459	p.F820S	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
UHRF1BP1L	0	genome.wustl.edu	37	12	100482869	100482869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	12	100482869	100482869	G	A	SNP	UHRF1BP1L	NM_015054.1	human	genbank	58_37c	-1	validated	missense	c.845	p.S282F	0.999	NULL	NULL	-	no_errors
ZNF772	0	genome.wustl.edu	37	19	57988666	57988667	+	In_Frame_Ins	INS	-	-	GCC	novel	unknown	TCGA-AO-A1KP-01A-11D-A13L-09	TCGA-AO-A1KP-10A-01W-A14R-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bc36db60-3f6b-42c4-b03e-b7c74c3dda5c	ca375523-be3b-4d91-a319-227b0c988d7c	19	57988666	57988667	-	GCC	INS	ZNF772	NM_001024596.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.12_11	p.5in_frame_insA	0.000:0.032	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
