Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CHD5	26038	genome.wustl.edu	37	1	6206464	6206464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015557.1	-1	provisional	p.V537A	1.000	31	0%	18	44.4%	-	-	benign(0.01)	tolerated(0.81)	neutral(0.001)	HMMSmart_CHROMO,superfamily_Chromodomain-like
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
KIF1B	23095	genome.wustl.edu	37	1	10357111	10357111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015074.3	+1	reviewed	p.D627G	1.000	124	0%	173	45.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PGD	5226	genome.wustl.edu	37	1	10479585	10479585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002631.2	+1	reviewed	p.S441G	1.000	113	0%	115	23.5%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
VPS13D	55187	genome.wustl.edu	37	1	12403039	12403039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015378.2	+1	reviewed	p.E2939V	0.993	59	0%	98	34.7%	-	-	benign(0.051)	deleterious(0.04)	neutral(0.352)	NULL
CASP9	842	genome.wustl.edu	37	1	15831170	15831170	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000424908	-1	known	p.W110R	0.993	36	0%	41	48.8%	-	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
HSPG2	3339	genome.wustl.edu	37	1	22175257	22175257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000374695	-1	known	p.E2539G	1.000	44	0%	24	66.7%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_I-set,superfamily_Immunoglobulin
ZBTB40	9923	genome.wustl.edu	37	1	22848120	22848120	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001083621.1	+1	validated	p.E1060	0.005	162	0%	192	38%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HNRNPR	10236	genome.wustl.edu	37	1	23640165	23640165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001102398.1	-1	reviewed	p.T353A	1.000	46	0%	74	28.4%	-	-	benign(0.104)	tolerated(0.73)	neutral(0.009)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ASAP3	55616	genome.wustl.edu	37	1	23782465	23782465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017707.3	-1	reviewed	p.S86N	1.000	55	0%	62	38.7%	-	-	benign(0.019)	tolerated(1)	neutral(0.001)	NULL
TCEB3	6924	genome.wustl.edu	37	1	24078119	24078119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003198.2	+1	reviewed	p.K368Q	0.998	205	0%	190	48.4%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
TCEB3	6924	genome.wustl.edu	37	1	24080909	24080909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003198.2	+1	reviewed	p.C610R	1.000	122	0%	96	37.5%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Elongin_A
FAM46B	115572	genome.wustl.edu	37	1	27333172	27333172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052943.3	-1	validated	p.C181R	1.000	42	0%	55	32.7%	-	-	possibly_damaging(0.801)	tolerated(0.34)	neutral(0.325)	HMMPfam_DUF1693
AHDC1	27245	genome.wustl.edu	37	1	27878265	27878265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001029882.2	-1	validated	p.V121A	1.000	51	2%	66	33.3%	-	-	unknown(0)	deleterious(0)	-	NULL
PTPRU	10076	genome.wustl.edu	37	1	29585086	29585086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005704.3	+1	reviewed	p.L92P	1.000	154	0.6%	189	46%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1
EIF3I	8668	genome.wustl.edu	37	1	32689634	32689634	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003757.2	+1	validated	e3-1	1.000	40	0%	27	48.1%	-	-	-	-	-	-
CSMD2	114784	genome.wustl.edu	37	1	34080137	34080137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052896.3	-1	validated	p.C1994R	1.000	45	0%	38	28.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZMYM4	9202	genome.wustl.edu	37	1	35884069	35884069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005095.2	+1	validated	p.K1445N	1.000	149	0%	133	36.1%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	NULL
EIF2C4	192670	genome.wustl.edu	37	1	36316480	36316480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017629.2	+1	reviewed	p.Q768R	1.000	59	0%	77	37.7%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
EIF2C1	26523	genome.wustl.edu	37	1	36359938	36359938	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012199.2	+1	reviewed	p.H269	1.000	92	0%	76	51.3%	-	-	-	-	-	HMMPfam_PAZ,superfamily_PAZ domain
MACF1	23499	genome.wustl.edu	37	1	39854195	39854195	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000372925	+1	known	p.R2278G	0.952	98	0%	105	44.8%	-	-	-	-	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39878252	39878252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015038.1	+1	predicted	p.L772P	0.014	206	0%	175	37.1%	-	-	unknown(0)	deleterious(0)	-	NULL
MYCL1	4610	genome.wustl.edu	37	1	40367035	40367035	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001033081.2	-1	validated	p.A24	1.000	6	0.000	11	0.455	-	-	-	-	-	HMMPfam_Myc_N
NFYC	4802	genome.wustl.edu	37	1	41218880	41218880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142588.1	+1	reviewed	p.I117V	1.000	42	0%	39	48.7%	-	-	benign(0.081)	tolerated(0.12)	neutral(0.267)	NULL
SLFNL1	200172	genome.wustl.edu	37	1	41486224	41486224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144990.3	-1	validated	p.Y37H	0.114	38	0%	40	37.5%	-	-	benign(0.263)	tolerated(0.21)	neutral(0.071)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42045494	42045494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024503.3	-1	validated	p.K1659E	1.000	44	0%	57	52.6%	-	-	probably_damaging(0.979)	tolerated(0.4)	neutral(0.438)	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42657002	42657002	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014947.3	-1	validated	p.P441	0.985	143	0.7%	149	36.2%	-	-	-	-	-	NULL
TIE1	7075	genome.wustl.edu	37	1	43779616	43779616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005424.2	+1	provisional	p.T796A	0.998	41	0%	45	37.8%	-	-	probably_damaging(0.991)	tolerated(1)	neutral(0.444)	NULL
MPL	4352	genome.wustl.edu	37	1	43803529	43803529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005373.2	+1	reviewed	p.W4R	1.000	59	0%	76	52.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SZT2	23334	genome.wustl.edu	37	1	43912625	43912625	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015284.2	+1	predicted	e49-1	1.000	17	0%	18	38.9%	-	-	-	-	-	-
PTPRF	5792	genome.wustl.edu	37	1	44019487	44019487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002840.3	+1	reviewed	p.D85G	1.000	89	0%	67	28.4%	-	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HECTD3	79654	genome.wustl.edu	37	1	45475781	45475781	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024602.5	-1	validated	p.P212	0.997	89	0%	78	41%	-	-	-	-	-	superfamily_Galactose-binding domain-like
MUTYH	4595	genome.wustl.edu	37	1	45796861	45796861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001128425.1	-1	reviewed	p.M490T	1.000	163	0%	156	28.2%	-	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	HMMPfam_NUDIX,superfamily_Nudix
AGBL4	84871	genome.wustl.edu	37	1	49511378	49511378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032785.3	-1	validated	p.E158*	1.000	18	0%	17	41.2%	-	-	-	-	-	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52901119	52901119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001009881.1	-1	validated	p.N1394S	0.869	114	0%	110	50.9%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
FAM159A	348378	genome.wustl.edu	37	1	53122681	53122681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001042693.1	+1	validated	p.P181H	0.577	363	0%	390	30.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMEM59	9528	genome.wustl.edu	37	1	54506481	54506481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004872.3	-1	provisional	p.R219G	0.252	119	0%	111	35.1%	-	-	benign(0.004)	tolerated(0.32)	neutral(0.024)	NULL
CACHD1	57685	genome.wustl.edu	37	1	65157238	65157238	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020925.2	+1	validated	p.E1222	0.505	85	0%	127	26%	-	-	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65325866	65325866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002227.2	-1	reviewed	p.A419V	1.000	40	0%	90	45.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZZZ3	26009	genome.wustl.edu	37	1	78034150	78034150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015534.4	-1	provisional	p.D778G	1.000	26	0%	54	44.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SH3GLB1	51100	genome.wustl.edu	37	1	87188272	87188272	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016009.3	+1	validated	p.A131	0.972	67	1.5%	150	44.7%	-	-	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
CCDC18	343099	genome.wustl.edu	37	1	93705403	93705403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_206886.2	+1	validated	p.L1095F	0.978	236	0%	323	36.2%	-	-	unknown(0)	-	-	superfamily_Prefoldin
VCAM1	7412	genome.wustl.edu	37	1	101198223	101198223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001078.2	+1	reviewed	p.V592A	0.490	122	0%	203	42.9%	-	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMSmart_SM00409,superfamily_Immunoglobulin
STXBP3	6814	genome.wustl.edu	37	1	109340784	109340784	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007269.2	+1	validated	p.P458	0.038	184	0%	338	16.9%	-	-	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
SYPL2	284612	genome.wustl.edu	37	1	110019434	110019434	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001040709.1	+1	validated	p.D97	0.000	62	0%	91	36.3%	-	-	-	-	-	HMMPfam_MARVEL
GSTM2	2946	genome.wustl.edu	37	1	110217456	110217456	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000848.3	+1	reviewed	p.*219Q	0.116	169	0%	198	13.1%	-	-	-	-	-	NULL
LRIF1	55791	genome.wustl.edu	37	1	111490908	111490908	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018372.3	-1	validated	p.T661	0.228	325	0%	366	35.2%	-	-	-	-	-	NULL
DRAM2	128338	genome.wustl.edu	37	1	111663136	111663136	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178454.4	-1	validated	e4+2	1.000	59	0%	58	43.1%	-	-	-	-	-	-
CTTNBP2NL	55917	genome.wustl.edu	37	1	112998925	112998925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018704.2	+1	validated	p.K271E	1.000	370	0%	396	29.8%	-	-	possibly_damaging(0.608)	deleterious(0)	deleterious(0.655)	HMMPfam_CortBP2
CTTNBP2NL	55917	genome.wustl.edu	37	1	112999369	112999369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018704.2	+1	validated	p.A419S	0.766	390	0%	455	10.8%	-	-	benign(0.4)	tolerated(0.19)	neutral(0.178)	HMMPfam_CortBP2
CSDE1	7812	genome.wustl.edu	37	1	115280120	115280120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001007553.1	-1	validated	p.T125I	1.000	69	0%	64	34.4%	-	-	benign(0.122)	deleterious(0.04)	neutral(0.359)	NULL
ITGA10	8515	genome.wustl.edu	37	1	145542254	145542258	+	Frame_Shift_Del	DEL	AAGAG	AAGAG	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AAGAG	AAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003637.3	+1	reviewed	p.E1163fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ANKRD35	148741	genome.wustl.edu	37	1	145558889	145558889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144698.3	+1	validated	p.S170P	1.000	41	0%	83	27.7%	-	-	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
HIST2H2BF	440689	genome.wustl.edu	37	1	149783523	149783523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000427880	-1	known	p.V119G	1.000	143	0%	167	18.6%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_H2B,superfamily_Histone-fold
MTMR11	10903	genome.wustl.edu	37	1	149901144	149901144	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181873.3	-1	validated	p.L597	0.998	135	0%	216	26.4%	-	-	-	-	-	NULL
RPRD2	23248	genome.wustl.edu	37	1	150444303	150444303	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015203.3	+1	validated	p.K960M	1.000	438	0%	749	26.2%	-	-	benign(0.293)	deleterious(0.01)	deleterious(0.496)	NULL
RPRD2	23248	genome.wustl.edu	37	1	150444616	150444616	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015203.3	+1	validated	p.E1064	0.636	193	0.5%	348	23.9%	-	-	-	-	-	NULL
SETDB1	9869	genome.wustl.edu	37	1	150933142	150933142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001145415.1	+1	reviewed	p.E868D	1.000	216	0.5%	418	28.5%	-	-	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CDC42SE1	56882	genome.wustl.edu	37	1	151027539	151027539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001038707.1	-1	validated	p.T40A	1.000	138	0%	204	25%	-	-	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	HMMPfam_PBD
PSMD4	5710	genome.wustl.edu	37	1	151238503	151238508	+	In_Frame_Del	DEL	GCAGCG	GCAGCG	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	GCAGCG	GCAGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002810.2	+1	reviewed	p.RQ230in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00726
CGN	57530	genome.wustl.edu	37	1	151509213	151509213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020770.2	+1	validated	p.L1105P	1.000	75	0%	100	30%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myosin_tail_1
TCHHL1	126637	genome.wustl.edu	37	1	152059336	152059336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008536.1	-1	provisional	p.E274D	0.003	412	0%	576	22.7%	-	-	benign(0.209)	tolerated(0.37)	neutral(0.040)	NULL
TCHHL1	126637	genome.wustl.edu	37	1	152059713	152059713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008536.1	-1	provisional	p.S149C	0.536	184	0%	278	25.5%	-	-	probably_damaging(0.977)	tolerated(0.11)	deleterious(0.691)	NULL
FLG	2312	genome.wustl.edu	37	1	152277218	152277218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002016.1	-1	reviewed	p.R3382C	0.000	313	0%	652	34.8%	-	-	unknown(0)	deleterious(0.02)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152280810	152280810	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002016.1	-1	reviewed	p.S2184	0.000	267	0%	492	22.8%	-	-	-	-	-	NULL
TRIM46	80128	genome.wustl.edu	37	1	155148678	155148678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_025058.3	+1	validated	p.T214A	0.996	53	0%	90	26.7%	-	-	benign(0.221)	deleterious(0.02)	neutral(0.405)	NULL
TRIM46	80128	genome.wustl.edu	37	1	155150626	155150626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_025058.3	+1	validated	p.H353R	1.000	64	0%	97	18.6%	-	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
HCN3	57657	genome.wustl.edu	37	1	155257117	155257117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020897.1	+1	validated	p.L544P	1.000	80	0%	100	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_cNMP_binding
KIAA0907	22889	genome.wustl.edu	37	1	155893424	155893424	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014949.2	-1	predicted	p.L316	1.000	105	0%	143	32.2%	-	-	-	-	-	superfamily_Eukaryotic type KH-domain (KH-domain type I)
SEMA4A	64218	genome.wustl.edu	37	1	156142782	156142782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022367.2	+1	provisional	p.M434V	0.993	81	0%	105	24.8%	-	-	benign(0.062)	deleterious(0.01)	neutral(0.410)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MEF2D	4209	genome.wustl.edu	37	1	156453069	156453069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005920.2	-1	provisional	p.I6V	1.000	142	0%	196	19.9%	-	-	benign(0.296)	tolerated(0.27)	neutral(0.125)	HMMSmart_SM00432,PatternScan_MADS_BOX_1,superfamily_SRF-like
INSRR	3645	genome.wustl.edu	37	1	156812197	156812197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014215.1	-1	validated	p.E1077G	1.000	95	0%	126	31%	-	-	possibly_damaging(0.475)	deleterious(0.01)	deleterious(0.562)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
NTRK1	4914	genome.wustl.edu	37	1	156846290	156846290	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002529.3	+1	reviewed	p.G577	0.161	21	0%	26	19.2%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ARHGEF11	9826	genome.wustl.edu	37	1	157014101	157014101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198236.1	-1	reviewed	p.S8R	0.999	94	0%	300	25%	-	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
OR10K1	391109	genome.wustl.edu	37	1	158435545	158435545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001004473.1	+1	provisional	p.I65T	0.015	419	0.2%	782	24.3%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158617423	158617423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003126.2	-1	reviewed	p.N1268D	0.974	72	0%	160	30.6%	-	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6N2	81442	genome.wustl.edu	37	1	158747371	158747371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005278.1	-1	provisional	p.S19G	0.031	573	0%	867	25.4%	-	-	benign(0.03)	tolerated(0.57)	neutral(0.007)	superfamily_SSF81321
PYHIN1	149628	genome.wustl.edu	37	1	158909226	158909226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000368135	+1	known	p.A205T	0.000	47	0%	36	36.1%	-	-	possibly_damaging(0.93)	tolerated(0.26)	neutral(0.410)	NULL
ATP1A4	480	genome.wustl.edu	37	1	160141197	160141197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144699.3	+1	reviewed	p.L550V	0.749	133	0%	193	36.3%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160143944	160143944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144699.3	+1	reviewed	p.I679V	0.012	121	0%	209	31.6%	-	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
PVRL4	81607	genome.wustl.edu	37	1	161044092	161044092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030916.2	-1	validated	p.A358T	0.006	76	0%	151	33.1%	-	-	possibly_damaging(0.621)	deleterious(0.02)	deleterious(0.600)	NULL
RXRG	6258	genome.wustl.edu	37	1	165406395	165406395	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001009598.1	-1	reviewed	p.L31	0.001	34	0%	53	17%	-	-	-	-	-	NULL
RCSD1	92241	genome.wustl.edu	37	1	167653239	167653239	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052862.3	+1	validated	e2+1	1.000	69	0%	111	32.4%	-	-	-	-	-	-
PRRC2C	23215	genome.wustl.edu	37	1	171501888	171501888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015172.3	+1	validated	p.Q552R	0.710	68	0%	107	22.4%	-	-	unknown(0)	tolerated(0.43)	-	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173551124	173551124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178527.3	-1	validated	p.S222G	0.000	51	0%	83	19.3%	-	-	benign(0.145)	tolerated(0.5)	neutral(0.022)	HMMPfam_Na_H_Exchanger
FAM5B	57795	genome.wustl.edu	37	1	177250068	177250068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021165.2	+1	provisional	p.M586V	1.000	64	0%	81	28.4%	-	-	benign(0.029)	tolerated(0.13)	neutral(0.254)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181741295	181741295	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000721.2	+1	reviewed	p.N1689	0.262	195	0%	273	25.6%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LAMC2	3918	genome.wustl.edu	37	1	183204730	183204730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005562.2	+1	reviewed	p.N774S	0.000	77	0%	123	29.3%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
UCHL5	51377	genome.wustl.edu	37	1	192992122	192992122	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000420791	-1	known	p.F151S	0.998	113	0%	249	23.7%	-	-	-	-	-	NULL
F13B	2165	genome.wustl.edu	37	1	197019903	197019903	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001994.2	-1	reviewed	p.F554	0.468	64	0%	124	31.5%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
DSTYK	25778	genome.wustl.edu	37	1	205129297	205129297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015375.2	-1	reviewed	p.V684F	1.000	228	0%	354	33.6%	-	-	possibly_damaging(0.714)	deleterious(0)	deleterious(0.703)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDK18	5129	genome.wustl.edu	37	1	205498672	205498672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_212503.2	+1	validated	p.L431P	1.000	29	0%	31	38.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LOC642587	642587	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001104548.1	+1	validated	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
RCOR3	55758	genome.wustl.edu	37	1	211462694	211462694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001136223.1	+1	validated	p.I299V	1.000	169	0%	305	21.3%	-	-	benign(0)	tolerated(1)	-	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222717458	222717458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024746.3	-1	validated	p.L132H	1.000	78	0%	153	29.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PARP1	142	genome.wustl.edu	37	1	226564834	226564834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001618.3	-1	reviewed	p.Y639C	1.000	280	0%	486	25.5%	-	-	possibly_damaging(0.939)	deleterious(0.04)	deleterious(0.734)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228466933	228466933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098623.1	+1	reviewed	p.P2395H	0.059	20	0%	31	35.5%	-	-	probably_damaging(0.993)	-	-	superfamily_Immunoglobulin
TRIM17	51127	genome.wustl.edu	37	1	228602418	228602418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001024940.2	-1	reviewed	p.V119A	0.254	32	0%	36	33.3%	-	-	benign(0.16)	tolerated(0.49)	neutral(0.025)	HMMPfam_zf-B_box,HMMSmart_BBOX
NUP133	55746	genome.wustl.edu	37	1	229601226	229601226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018230.2	-1	reviewed	p.N747S	0.011	111	0%	232	24.1%	-	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_Nup133
URB2	9816	genome.wustl.edu	37	1	229773830	229773830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014777.2	+1	provisional	p.V1157A	0.044	33	0%	68	36.8%	-	-	benign(0.406)	tolerated(0.07)	neutral(0.450)	NULL
LYST	1130	genome.wustl.edu	37	1	235840412	235840412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000081.2	-1	reviewed	p.I3673V	1.000	93	0%	178	17.4%	-	-	probably_damaging(0.987)	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
LYST	1130	genome.wustl.edu	37	1	235872587	235872587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000081.2	-1	reviewed	p.Q3316R	1.000	77	0%	128	31.2%	-	-	probably_damaging(0.999)	-	-	HMMPfam_Beach,superfamily_BEACH domain
KIF26B	55083	genome.wustl.edu	37	1	245849094	245849094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018012.3	+1	provisional	p.D937N	0.999	9	0.000	14	0.429	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF670	93474	genome.wustl.edu	37	1	247201353	247201353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033213.2	-1	validated	p.T190A	0.128	103	0%	189	24.3%	-	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	superfamily_SSF57667
ZNF669	79862	genome.wustl.edu	37	1	247264614	247264614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024804.2	-1	validated	p.I153V	0.355	104	0%	175	31.4%	-	-	benign(0)	tolerated(0.89)	-	NULL
OR14K1	343170	genome.wustl.edu	37	1	247902074	247902074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000283225	+1	known	p.L53P	0.973	139	0%	272	21%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM58	25893	genome.wustl.edu	37	1	248023926	248023926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015431.3	+1	validated	p.L143P	0.509	30	0%	49	34.7%	-	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
OR2T12	127064	genome.wustl.edu	37	1	248458244	248458244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001004692.1	-1	provisional	p.L213M	0.000	120	0%	176	31.8%	-	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_7tm_1,superfamily_SSF81321
TRAPPC12	51112	genome.wustl.edu	37	2	3464076	3464076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016030.5	+1	validated	p.Y549C	1.000	34	0%	34	44.1%	-	-	benign(0.018)	tolerated(0.16)	neutral(0.060)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
GREB1	9687	genome.wustl.edu	37	2	11767168	11767168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014668.3	+1	reviewed	p.Y1463H	0.840	17	0%	17	70.6%	-	-	possibly_damaging(0.485)	tolerated(0.25)	neutral(0.198)	NULL
PUM2	23369	genome.wustl.edu	37	2	20494158	20494158	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015317.1	-1	provisional	p.Q377	1.000	122	0%	160	39.4%	-	-	-	-	-	NULL
C2orf43	60526	genome.wustl.edu	37	2	20990056	20990056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021925.2	-1	predicted	p.A86V	0.000	173	0%	209	34.4%	-	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_DUF2305,superfamily_SSF53474
ASXL2	55252	genome.wustl.edu	37	2	25966176	25966176	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018263.4	-1	validated	p.R1010	0.031	103	0%	98	34.7%	-	-	-	-	-	NULL
EMILIN1	11117	genome.wustl.edu	37	2	27308544	27308544	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007046.3	+1	reviewed	e8-2	1.000	14	0%	17	35.3%	-	-	-	-	-	-
IFT172	26160	genome.wustl.edu	37	2	27707933	27707933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015662.1	-1	validated	p.I83T	1.000	214	0%	280	44.3%	-	-	possibly_damaging(0.525)	deleterious(0)	deleterious(0.621)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ZNF512	84450	genome.wustl.edu	37	2	27826144	27826144	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032434.2	+1	validated	p.L302	0.971	318	0%	325	29.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
BRE	9577	genome.wustl.edu	37	2	28248229	28248229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004899.3	+1	validated	p.L146P	1.000	108	0%	155	41.9%	-	-	possibly_damaging(0.805)	deleterious(0.03)	deleterious(0.667)	HMMPfam_BRE
RASGRP3	25780	genome.wustl.edu	37	2	33741705	33741705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001139488.1	+1	validated	p.L56R	1.000	21	0%	22	45.5%	-	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
DHX57	90957	genome.wustl.edu	37	2	39089364	39089364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198963.1	-1	provisional	p.E165D	0.001	159	0%	191	45.5%	-	-	probably_damaging(0.973)	tolerated(0.42)	neutral(0.429)	NULL
PKDCC	91461	genome.wustl.edu	37	2	42281210	42281210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138370.2	+1	validated	p.L266Q	1.000	16	0%	10	50%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Protein kinase-like (PK-like)
USP34	9736	genome.wustl.edu	37	2	61415811	61415811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014709.3	-1	validated	p.R3356H	1.000	118	0%	135	40%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
OTX1	5013	genome.wustl.edu	37	2	63282728	63282728	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014562.2	+1	reviewed	p.P114	0.999	21	0%	35	37.1%	-	-	-	-	-	NULL
GKN1	56287	genome.wustl.edu	37	2	69207071	69207071	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_019617.3	+1	reviewed	p.P128	0.628	107	0%	178	39.9%	-	-	-	-	-	HMMPfam_BRICHOS
C2orf42	54980	genome.wustl.edu	37	2	70387891	70387891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017880.1	-1	predicted	p.I461N	1.000	62	0%	69	31.9%	-	-	possibly_damaging(0.929)	deleterious(0.04)	deleterious(0.725)	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71190748	71190748	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001692.3	+1	reviewed	p.G369	0.984	52	0%	52	32.7%	-	-	-	-	-	HMMPfam_ATP-synt_ab,superfamily_SSF52540
ZNF638	27332	genome.wustl.edu	37	2	71591149	71591149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001014972.1	+1	reviewed	p.R495H	0.115	111	0%	118	13.6%	-	-	benign(0.027)	tolerated(1)	neutral(0.002)	NULL
DYSF	8291	genome.wustl.edu	37	2	71840533	71840533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001130987.1	+1	reviewed	p.P1486H	0.996	41	0%	24	50%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74596485	74596485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004082.3	-1	reviewed	p.T509M	0.999	114	0%	100	38%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
CCDC142	84865	genome.wustl.edu	37	2	74708588	74708588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032779.3	-1	validated	p.W367R	0.995	70	0%	60	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HK2	3099	genome.wustl.edu	37	2	75061762	75061762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000189.4	+1	reviewed	p.V19M	1.000	5	0.000	22	0.455	-	-	benign(0.027)	deleterious(0.02)	neutral(0.385)	HMMPfam_Hexokinase_1,superfamily_SSF53067
LOC730268	730268	genome.wustl.edu	37	2	88019376	88019376	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_002342213.1	+1	model	p.D310	0.995	96	0%	91	30.8%	-	-	-	-	-	NULL
SMYD1	150572	genome.wustl.edu	37	2	88402646	88402646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198274.2	+1	provisional	p.R320C	1.000	57	0%	72	37.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IGKV2D-28	28883	genome.wustl.edu	37	2	89999466	89999466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000453166	+1	known	p.S90G	1.000	82	0%	108	37%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
SLC9A2	6549	genome.wustl.edu	37	2	103324647	103324647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003048.3	+1	validated	p.R713H	0.999	199	0%	282	50%	-	-	possibly_damaging(0.895)	tolerated(0.11)	deleterious(0.625)	NULL
MRPS9	64965	genome.wustl.edu	37	2	105708992	105708992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182640.2	+1	reviewed	p.Y262C	1.000	78	0%	109	30.3%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
RANBP2	5903	genome.wustl.edu	37	2	109400237	109400237	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006267.4	+1	reviewed	p.K3185	1.000	95	0%	112	45.5%	-	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
EPB41L5	57669	genome.wustl.edu	37	2	120857849	120857849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020909.3	+1	validated	p.N403S	0.997	117	0%	193	36.3%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
GLI2	2736	genome.wustl.edu	37	2	121708924	121708924	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005270.4	+1	reviewed	p.P120	0.007	22	0%	18	61.1%	-	-	-	-	-	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125671701	125671701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_130773.2	+1	reviewed	p.C1253R	1.000	176	0%	281	39.1%	-	-	benign(0.344)	deleterious(0)	deleterious(0.553)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128366304	128366304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080527.1	+1	provisional	p.E889K	0.000	12	0%	14	42.9%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
POTEF	728378	genome.wustl.edu	37	2	130832048	130832048	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099771.2	-1	validated	p.L999	1.000	123	0.8%	144	23.6%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMPD4	55627	genome.wustl.edu	37	2	130910683	130910683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017951.3	-1	validated	p.I735T	1.000	29	0%	33	42.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC150786	150786	genome.wustl.edu	37	2	132120672	132120672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001077637.1	-1	validated	p.C208R	1.000	562	0.2%	568	33.3%	-	-	-	-	-	superfamily_SSF52540
GPR39	2863	genome.wustl.edu	37	2	133175213	133175213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001508.2	+1	validated	p.E200K	0.219	47	0%	52	38.5%	-	-	benign(0.017)	tolerated(0.86)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MBD5	55777	genome.wustl.edu	37	2	149226988	149226988	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000416015	+1	known	p.H232R	0.991	91	0%	113	34.5%	-	-	-	-	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149228063	149228063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000453884	+1	known	p.Y851H	1.000	37	0%	42	33.3%	-	-	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152522902	152522902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004543.4	-1	reviewed	p.E1578G	1.000	62	0%	134	33.6%	-	-	probably_damaging(0.96)	tolerated(0.06)	deleterious(0.726)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152548783	152548783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004543.4	-1	reviewed	p.F664L	1.000	108	0%	172	45.3%	-	-	probably_damaging(0.993)	tolerated(0.77)	neutral(0.451)	NULL
ITGB6	3694	genome.wustl.edu	37	2	160958313	160958313	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000888.3	-1	provisional	p.S767	0.995	66	0%	102	34.3%	-	-	-	-	-	HMMPfam_Integrin_b_cyt
KCNH7	90134	genome.wustl.edu	37	2	163253438	163253439	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033272.2	-1	reviewed	p.G808fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
SCN9A	6335	genome.wustl.edu	37	2	167060465	167060465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002977.3	-1	reviewed	p.G1581C	1.000	30	0%	30	26.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DLX1	1745	genome.wustl.edu	37	2	172951605	172951605	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000409492	+1	known	p.V179	0.004	81	0%	58	29.3%	-	-	-	-	-	HMMSmart_HOX,superfamily_Homeodomain_like
DLX1	1745	genome.wustl.edu	37	2	172951798	172951798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000409492	+1	known	p.A244T	0.000	19	0.000	9	0.778	-	-	-	-	-	NULL
ITGA6	3655	genome.wustl.edu	37	2	173356014	173356014	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001079818.1	+1	reviewed	p.A948	0.533	176	0%	253	46.2%	-	-	-	-	-	superfamily_Integrin domains
WIPF1	7456	genome.wustl.edu	37	2	175436493	175436493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001077269.1	-1	reviewed	p.P347L	0.230	59	0%	68	54.4%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
WIPF1	7456	genome.wustl.edu	37	2	175439940	175439940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001077269.1	-1	reviewed	p.R117M	1.000	260	0%	327	36.1%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
OSBPL6	114880	genome.wustl.edu	37	2	179238672	179238672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145739.1	+1	reviewed	p.S488N	1.000	91	0%	104	34.6%	-	-	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
TTN	7273	genome.wustl.edu	37	2	179427224	179427224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000356127	-1	known	p.T25309A	1.000	71	0%	104	32.7%	-	-	probably_damaging(0.959)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179437785	179437785	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133378.4	-1	reviewed	p.I21790T	0.992	56	0%	64	43.8%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179444953	179444953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000356127	-1	known	p.T19784N	1.000	97	0%	140	57.9%	-	-	possibly_damaging(0.847)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179612283	179612283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133379.3	-1	reviewed	p.V4948	0.548	140	0%	206	12.6%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179639077	179639077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133379.3	-1	reviewed	p.E2305G	1.000	183	0%	226	36.3%	-	-	benign(0.005)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179640624	179640624	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133379.3	-1	reviewed	p.K1989	0.049	144	0%	258	45.7%	-	-	-	-	-	NULL
UBE2E3	10477	genome.wustl.edu	37	2	181925492	181925492	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006357.2	+1	reviewed	p.S160*	1.000	73	0%	134	41%	-	-	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
DNAJC10	54431	genome.wustl.edu	37	2	183641852	183641852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018981.1	+1	provisional	p.E792G	1.000	64	0%	94	27.7%	-	-	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
GLS	2744	genome.wustl.edu	37	2	191775025	191775025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014905.3	+1	validated	p.I339S	1.000	28	0%	48	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase
STAT1	6772	genome.wustl.edu	37	2	191844500	191844500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007315.3	-1	reviewed	p.D575E	1.000	55	0%	86	36%	-	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_SH2,superfamily_SH2 domain
SGOL2	151246	genome.wustl.edu	37	2	201438120	201438120	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152524.5	+1	validated	p.I1017	0.026	240	0%	252	44.8%	-	-	-	-	-	NULL
PLEKHM3	389072	genome.wustl.edu	37	2	208811148	208811148	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000447645	-1	known	p.*297R	0.846	254	0%	256	36.7%	-	-	-	-	-	NULL
KANSL1L	151050	genome.wustl.edu	37	2	210908786	210908786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152519.2	-1	validated	p.M600L	0.967	141	0%	197	37.6%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
FN1	2335	genome.wustl.edu	37	2	216271057	216271057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_212482.1	-1	reviewed	p.V964L	0.006	77	0%	74	50%	-	-	benign(0.06)	tolerated(0.4)	neutral(0.020)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CRYBA2	1412	genome.wustl.edu	37	2	219854993	219854993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005209.1	-1	reviewed	p.I192T	1.000	37	0%	32	56.2%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
DES	1674	genome.wustl.edu	37	2	220286159	220286159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001927.3	+1	reviewed	p.I374T	1.000	48	2.1%	42	35.7%	-	-	possibly_damaging(0.838)	deleterious(0.02)	deleterious(0.703)	HMMPfam_Filament
GMPPA	29926	genome.wustl.edu	37	2	220369948	220369948	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013335.2	+1	reviewed	e7-2	1.000	48	0%	34	32.4%	-	-	-	-	-	-
COL4A4	1286	genome.wustl.edu	37	2	227907842	227907842	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000092.4	-1	reviewed	p.S1116	0.996	87	0%	93	48.4%	-	-	-	-	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228147183	228147183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000091.3	+1	reviewed	p.Q864R	0.065	71	0%	105	42.9%	-	-	unknown(0)	tolerated(0.56)	-	NULL
SP100	6672	genome.wustl.edu	37	2	231406620	231406620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080391.1	+1	validated	p.S806F	0.000	75	1.3%	96	16.7%	-	-	benign(0.019)	tolerated(0.24)	neutral(0.038)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
C2orf57	165100	genome.wustl.edu	37	2	232458014	232458014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152614.2	+1	validated	p.S118G	0.000	142	0%	135	37%	-	-	benign(0.063)	deleterious(0)	neutral(0.449)	NULL
EIF4E2	9470	genome.wustl.edu	37	2	233431537	233431537	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004846.2	+1	validated	e5-2	0.999	90	0%	81	45.7%	-	-	-	-	-	-
COL6A3	1293	genome.wustl.edu	37	2	238296286	238296286	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004369.3	-1	reviewed	p.P417	0.952	39	0%	38	42.1%	-	-	-	-	-	superfamily_vWA-like
RBM44	375316	genome.wustl.edu	37	2	238742986	238742986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080504.2	+1	validated	p.S1034Y	0.256	7	0.000	20	0.200	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
PER2	8864	genome.wustl.edu	37	2	239159208	239159208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022817.2	-1	reviewed	p.Y1151H	0.996	21	0%	15	33.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OR6B3	150681	genome.wustl.edu	37	2	240984995	240984995	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173351.1	-1	provisional	p.S165	0.000	86	0%	64	40.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR35	2859	genome.wustl.edu	37	2	241569709	241569709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005301.2	+1	provisional	p.R114C	1.000	7	0.000	11	0.455	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
PPP1R7	5510	genome.wustl.edu	37	2	242099901	242099901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002712.1	+1	provisional	p.R197C	1.000	52	0%	51	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00365,superfamily_L domain-like
FARP2	9855	genome.wustl.edu	37	2	242381120	242381120	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000413432	+1	known	p.T207	0.420	13	0.000	9	0.444	-	-	-	-	-	NULL
CHL1	10752	genome.wustl.edu	37	3	391175	391175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006614.2	+1	reviewed	p.A328T	1.000	174	0%	230	43.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CRBN	51185	genome.wustl.edu	37	3	3192700	3192700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016302.3	-1	reviewed	p.I393T	0.552	58	0%	81	46.9%	-	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
OGG1	4968	genome.wustl.edu	37	3	9798808	9798808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002542.5	+1	reviewed	p.K338E	0.029	193	0%	203	34.5%	-	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	NULL
SLC6A6	6533	genome.wustl.edu	37	3	14513736	14513736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001134367.1	+1	validated	p.Y374H	1.000	27	0%	31	19.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SNF
GRIP2	80852	genome.wustl.edu	37	3	14561919	14561919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080423.1	-1	provisional	p.K377E	1.000	27	0%	37	45.9%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
C3orf20	84077	genome.wustl.edu	37	3	14768504	14768504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032137.4	+1	validated	p.F555L	1.000	91	1.1%	111	33.3%	-	-	benign(0.095)	deleterious(0)	neutral(0.452)	NULL
CAPN7	23473	genome.wustl.edu	37	3	15292436	15292436	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014296.2	+1	reviewed	e20-2	0.998	170	0%	247	33.6%	-	-	-	-	-	-
SATB1	6304	genome.wustl.edu	37	3	18390845	18390845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001131010.1	-1	validated	p.H703	0.015	196	0%	269	48%	-	-	-	-	-	HMMSmart_SM00389,superfamily_Homeodomain-like
RBMS3	27303	genome.wustl.edu	37	3	29628650	29628650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001003793.2	+1	reviewed	p.A118V	1.000	83	0%	95	37.9%	-	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
OSBPL10	114884	genome.wustl.edu	37	3	31774787	31774787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017784.4	-1	reviewed	p.S353T	0.881	123	0%	167	46.7%	-	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
OSBPL10	114884	genome.wustl.edu	37	3	31789495	31789495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017784.4	-1	reviewed	p.A283T	0.998	179	0%	194	53.6%	-	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	NULL
UBP1	7342	genome.wustl.edu	37	3	33434837	33434837	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001128161.1	-1	validated	p.G500	0.936	96	0%	105	31.4%	-	-	-	-	-	NULL
MLH1	4292	genome.wustl.edu	37	3	37035049	37035049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000249.3	+1	reviewed	p.V4A	1.000	24	0%	32	40.6%	-	-	benign(0.039)	tolerated(0.2)	neutral(0.051)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37366388	37366388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002078.4	+1	reviewed	p.L1004P	0.925	217	0%	291	35.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
OXSR1	9943	genome.wustl.edu	37	3	38263171	38263171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005109.2	+1	reviewed	p.M198T	1.000	153	0.7%	304	33.9%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SCN5A	6331	genome.wustl.edu	37	3	38591892	38591892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099404.1	-1	reviewed	p.R1991W	0.000	52	0%	68	51.5%	-	-	possibly_damaging(0.91)	deleterious(0.02)	deleterious(0.746)	NULL
SCN11A	11280	genome.wustl.edu	37	3	38913712	38913712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014139.2	-1	validated	p.R1156H	0.608	224	0%	384	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZNF621	285268	genome.wustl.edu	37	3	40573648	40573648	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098414.1	+1	validated	p.R129	0.001	196	0%	171	43.9%	-	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41278187	41278187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098209.1	+1	reviewed	p.M688T	1.000	216	0.5%	284	41.9%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
VIPR1	7433	genome.wustl.edu	37	3	42569606	42569606	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004624.3	+1	validated	p.S209	0.000	36	0%	37	48.6%	-	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
LZTFL1	54585	genome.wustl.edu	37	3	45872571	45872571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020347.2	-1	validated	p.E172D	0.259	76	0%	95	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47663719	47663719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003074.3	-1	validated	p.I920S	1.000	210	0%	278	35.3%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
ATRIP	84126	genome.wustl.edu	37	3	48500825	48500825	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_130384.1	+1	reviewed	p.D299	0.344	48	0%	47	48.9%	-	-	-	-	-	NULL
COL7A1	1294	genome.wustl.edu	37	3	48625747	48625747	+	Missense_Mutation	SNP	G	G	A	rs2854389		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000094.3	-1	reviewed	p.A893V	0.000	8	0.000	10	0.400	-	-	unknown(0)	tolerated(0.57)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SLC25A20	788	genome.wustl.edu	37	3	48929457	48929457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000387.4	-1	reviewed	p.Y52H	1.000	164	0%	143	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
QRICH1	54870	genome.wustl.edu	37	3	49094887	49094887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017730.2	-1	validated	p.K249R	1.000	56	0%	53	43.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
QARS	5859	genome.wustl.edu	37	3	49136579	49136579	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005051.1	-1	reviewed	p.S574	0.904	104	0%	106	34.9%	-	-	-	-	-	superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c_C
USP19	10869	genome.wustl.edu	37	3	49148292	49148292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006677.1	-1	provisional	p.C1081R	1.000	56	0%	50	32%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP19	10869	genome.wustl.edu	37	3	49153548	49153548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006677.1	-1	provisional	p.R367H	1.000	29	0%	19	57.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HSP20-like chaperones,HMMPfam_DUF1872
LAMB2	3913	genome.wustl.edu	37	3	49169735	49169735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002292.3	-1	reviewed	p.Q118R	1.000	43	0%	28	42.9%	-	-	benign(0.007)	tolerated(0.41)	neutral(0.015)	HMMPfam_Laminin_N,HMMSmart_LamNT
CCDC71	64925	genome.wustl.edu	37	3	49200595	49200595	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022903.3	-1	validated	p.V349	0.000	50	0%	31	38.7%	-	-	-	-	-	NULL
ENSG00000236980	0	genome.wustl.edu	37	3	49227456	49227456	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000432035	-1	known	NULL	0.997	98	1%	99	34.3%	-	-	-	-	-	-
TCTA	6988	genome.wustl.edu	37	3	49450062	49450062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022171.2	+1	validated	p.Y68C	1.000	19	0%	32	25%	-	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
RBM6	10180	genome.wustl.edu	37	3	50036897	50036897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005777.2	+1	validated	p.V503A	1.000	155	0%	164	38.4%	-	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	HMMSmart_RRM,superfamily_SSF54928
RBM6	10180	genome.wustl.edu	37	3	50098913	50098913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005777.2	+1	validated	p.I791R	1.000	158	0%	223	43.9%	-	-	probably_damaging(0.998)	tolerated(0.94)	deleterious(0.474)	NULL
RBM5	10181	genome.wustl.edu	37	3	50129619	50129619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005778.1	+1	provisional	p.Y54C	1.000	33	0%	39	20.5%	-	-	possibly_damaging(0.797)	tolerated(0.13)	deleterious(0.552)	NULL
RBM5	10181	genome.wustl.edu	37	3	50148203	50148203	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005778.1	+1	provisional	p.Q485	1.000	40	0%	60	33.3%	-	-	-	-	-	NULL
NPRL2	10641	genome.wustl.edu	37	3	50385996	50385997	+	Splice_Site	INS	-	-	GA	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006545.4	-1	validated	e7-2	1.000:0.829	-	-	-	-	-	-	-	-	-	-
DNAH1	25981	genome.wustl.edu	37	3	52398968	52398968	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015512.4	+1	validated	p.T1817	0.001	49	0%	39	53.8%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
STAB1	23166	genome.wustl.edu	37	3	52557049	52557049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015136.2	+1	reviewed	p.C2307R	0.992	5	0.000	7	0.571	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_FAS1 domain,PatternScan_EGF_2
PBRM1	55193	genome.wustl.edu	37	3	52643435	52643435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018165.4	-1	validated	p.T789A	1.000	141	0%	159	42.1%	-	-	possibly_damaging(0.744)	deleterious(0.04)	deleterious(0.622)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
PBRM1	55193	genome.wustl.edu	37	3	52713669	52713669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018165.4	-1	validated	p.D20G	1.000	54	0%	64	29.7%	-	-	possibly_damaging(0.832)	deleterious(0.01)	deleterious(0.723)	superfamily_Bromodomain
CACNA1D	776	genome.wustl.edu	37	3	53774344	53774344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000720.2	+1	validated	p.F950S	1.000	65	0%	79	30.4%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_SSF81324
FAM208A	23272	genome.wustl.edu	37	3	56662571	56662571	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001112736.1	-1	validated	p.D1273	1.000	51	0%	44	40.9%	-	-	-	-	-	NULL
PRICKLE2	166336	genome.wustl.edu	37	3	64085229	64085229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198859.3	-1	validated	p.D678V	0.153	44	0%	42	42.9%	-	-	benign(0.132)	deleterious(0.03)	neutral(0.376)	NULL
PROS1	5627	genome.wustl.edu	37	3	93593227	93593227	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000313.3	-1	reviewed	p.P631	0.976	61	0%	64	46.9%	-	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
STX19	415117	genome.wustl.edu	37	3	93733612	93733612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001001850.1	-1	provisional	p.R168C	1.000	204	0%	245	52.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_t-snare
EPHA6	285220	genome.wustl.edu	37	3	96962907	96962907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080448.2	+1	provisional	p.V461A	0.999	68	0%	75	44%	-	-	benign(0.086)	deleterious(0.04)	neutral(0.355)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SENP7	57337	genome.wustl.edu	37	3	101056353	101056353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020654.3	-1	validated	p.S827L	1.000	58	0%	105	50.5%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
ALCAM	214	genome.wustl.edu	37	3	105243160	105243160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001627.2	+1	validated	p.I68V	1.000	88	0%	109	34.9%	-	-	benign(0.183)	tolerated(0.16)	neutral(0.076)	HMMSmart_SM00406,HMMSmart_SM00409,superfamily_Immunoglobulin
KIAA1524	57650	genome.wustl.edu	37	3	108288347	108288347	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020890.2	-1	validated	p.H334	0.002	31	0%	72	36.1%	-	-	-	-	-	superfamily_ARM repeat
TRAT1	50852	genome.wustl.edu	37	3	108565928	108565928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016388.2	+1	validated	p.Y56H	0.166	52	0%	51	23.5%	-	-	possibly_damaging(0.926)	tolerated(0.38)	neutral(0.392)	NULL
ABHD10	55347	genome.wustl.edu	37	3	111705216	111705216	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018394.2	+1	validated	p.G144	0.994	112	0%	124	25.8%	-	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
ZDHHC23	254887	genome.wustl.edu	37	3	113677366	113677366	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173570.3	+1	validated	p.C399	0.701	22	0%	35	45.7%	-	-	-	-	-	NULL
QTRTD1	79691	genome.wustl.edu	37	3	113804641	113804641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024638.2	+1	provisional	p.M380V	1.000	168	0%	210	51.9%	-	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMPfam_TGT,superfamily_tRNA_ribo_trans
DRD3	1814	genome.wustl.edu	37	3	113858457	113858457	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000796.3	-1	reviewed	p.V205fs	0.999	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C3orf15	89876	genome.wustl.edu	37	3	119456277	119456277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033364.3	+1	validated	p.N470S	0.085	148	0%	166	45.2%	-	-	benign(0.03)	tolerated(0.18)	neutral(0.058)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121388078	121388078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004487.3	-1	validated	p.Q3096R	0.660	122	0%	169	32%	-	-	benign(0.012)	deleterious(0.01)	neutral(0.406)	NULL
DTX3L	151636	genome.wustl.edu	37	3	122287407	122287407	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138287.3	+1	validated	p.T157	0.000	105	0%	101	44.6%	-	-	-	-	-	NULL
CCDC14	64770	genome.wustl.edu	37	3	123649993	123649993	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000479903	-1	known	p.Y208C	0.882	99	0%	171	33.3%	-	-	-	-	-	NULL
KALRN	8997	genome.wustl.edu	37	3	124053178	124053178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001024660.3	+1	reviewed	p.S493P	1.000	83	0%	115	34.8%	-	-	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	HMMSmart_SM00150,superfamily_Spectrin repeat
SLC12A8	84561	genome.wustl.edu	37	3	124906100	124906100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024628.5	-1	validated	p.L124P	1.000	23	0%	24	50%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_AA_permease
OSBPL11	114885	genome.wustl.edu	37	3	125266399	125266399	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022776.4	-1	reviewed	p.T564	0.271	94	0%	109	37.6%	-	-	-	-	-	HMMPfam_Oxysterol_BP
COPG1	22820	genome.wustl.edu	37	3	128973581	128973581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016128.3	+1	validated	p.T132A	1.000	42	0%	31	22.6%	-	-	probably_damaging(0.97)	tolerated(0.12)	deleterious(0.673)	HMMPfam_Adaptin_N,superfamily_ARM repeat
TOPBP1	11073	genome.wustl.edu	37	3	133371475	133371475	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007027.3	-1	reviewed	e7-2	0.999	102	0%	102	35.3%	-	-	-	-	-	-
TOPBP1	11073	genome.wustl.edu	37	3	133376752	133376752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007027.3	-1	reviewed	p.I85V	0.823	39	0%	57	49.1%	-	-	benign(0.006)	tolerated(0.41)	neutral(0.015)	NULL
MSL2	55167	genome.wustl.edu	37	3	135871056	135871056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018133.3	-1	validated	p.T223A	0.999	108	0%	110	34.5%	-	-	benign(0.247)	deleterious(0)	deleterious(0.470)	NULL
PCCB	5096	genome.wustl.edu	37	3	136035898	136035898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000532.4	+1	reviewed	p.V361A	1.000	119	0%	209	34%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
STAG1	10274	genome.wustl.edu	37	3	136087948	136087948	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005862.2	-1	reviewed	e23+2	1.000	77	0%	84	33.3%	-	-	-	-	-	-
STAG1	10274	genome.wustl.edu	37	3	136141655	136141655	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005862.2	-1	reviewed	p.P596	1.000	66	0%	100	54%	-	-	-	-	-	superfamily_ARM-type_fold
DBR1	51163	genome.wustl.edu	37	3	137893551	137893551	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016216.2	-1	validated	p.G29	0.073	13	0%	12	41.7%	-	-	-	-	-	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
ATR	545	genome.wustl.edu	37	3	142178126	142178126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001184.3	-1	reviewed	p.R2431K	0.998	98	0%	139	49.6%	-	-	benign(0.124)	tolerated(0.49)	neutral(0.021)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
ATR	545	genome.wustl.edu	37	3	142272178	142272178	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001184.3	-1	reviewed	p.K899T	1.000	108	0%	143	49.7%	-	-	possibly_damaging(0.737)	deleterious(0.02)	deleterious(0.653)	superfamily_ARM repeat
PLSCR5	389158	genome.wustl.edu	37	3	146307469	146307470	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001085420.1	-1	validated	p.A249fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Scramblase
PFN2	5217	genome.wustl.edu	37	3	149686143	149686143	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002628.4	-1	reviewed	e2+2	1.000	102	0%	194	32.5%	-	-	-	-	-	-
FAM194A	131831	genome.wustl.edu	37	3	150421525	150421525	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152394.3	-1	validated	p.E54V	0.000	72	1.4%	50	34%	-	-	unknown(0)	tolerated(0.16)	-	NULL
AADACL2	344752	genome.wustl.edu	37	3	151463353	151463353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_207365.3	+1	validated	p.A163V	0.367	175	0%	419	43.7%	-	-	benign(0.005)	tolerated(0.28)	neutral(0.032)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
SI	6476	genome.wustl.edu	37	3	164700035	164700035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001041.3	-1	reviewed	p.N1804S	0.000	67	0%	80	38.8%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
FNDC3B	64778	genome.wustl.edu	37	3	171830319	171830319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001135095.1	+1	validated	p.P17L	0.998	146	0%	203	27.1%	-	-	possibly_damaging(0.556)	deleterious(0.01)	deleterious(0.595)	NULL
NCEH1	57552	genome.wustl.edu	37	3	172351434	172351434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020792.4	-1	validated	p.D385G	1.000	162	0%	136	34.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
PIK3CA	5290	genome.wustl.edu	37	3	178947161	178947161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006218.2	+1	reviewed	p.L866W	1.000	71	0%	82	47.6%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
PIK3CA	5290	genome.wustl.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	G	A	rs121913283		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006218.2	+1	reviewed	p.M1043I	1.000	118	0%	166	47.6%	-	-	benign(0.256)	deleterious(0.02)	neutral(0.410)	HMMSmart_PI3Kc,superfamily_Kinase_like
MFN1	55669	genome.wustl.edu	37	3	179093118	179093118	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033540.2	+1	reviewed	p.A362	0.964	61	0%	94	27.7%	-	-	-	-	-	NULL
CCDC39	339829	genome.wustl.edu	37	3	180365007	180365007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181426.1	-1	validated	p.R463W	0.998	44	0%	69	47.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ABCF3	55324	genome.wustl.edu	37	3	183905932	183905932	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018358.2	+1	validated	p.V191	0.769	138	0%	106	32.1%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
EPHB3	2049	genome.wustl.edu	37	3	184290537	184290537	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004443.3	+1	reviewed	p.S143	0.034	11	0%	17	47.1%	-	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
VPS8	23355	genome.wustl.edu	37	3	184584687	184584687	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001009921.2	+1	validated	p.C473*	1.000	128	0%	218	39.9%	-	-	-	-	-	NULL
EHHADH	1962	genome.wustl.edu	37	3	184910766	184910766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001966.3	-1	reviewed	p.G474C	1.000	150	0%	180	43.3%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_3HCDH_N,superfamily_NAD(P)-bd
ATP13A3	79572	genome.wustl.edu	37	3	194169199	194169199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024524.3	-1	validated	p.I379M	0.910	240	0%	318	40.3%	-	-	benign(0.019)	deleterious(0)	neutral(0.446)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
LSG1	55341	genome.wustl.edu	37	3	194366921	194366921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018385.2	-1	reviewed	p.A532V	1.000	79	0%	107	43%	-	-	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	NULL
MFI2	4241	genome.wustl.edu	37	3	196753609	196753609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005929.4	-1	reviewed	p.T76S	1.000	22	0%	26	34.6%	-	-	benign(0.01)	tolerated(0.11)	neutral(0.272)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
LRCH3	84859	genome.wustl.edu	37	3	197598258	197598258	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000428136	+1	known	p.C63R	0.898	181	0%	192	33.3%	-	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
POLN	353497	genome.wustl.edu	37	4	2097640	2097640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181808.2	-1	validated	p.Q668R	0.000	56	0%	61	24.6%	-	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases
EVC2	132884	genome.wustl.edu	37	4	5586506	5586506	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_147127.4	-1	reviewed	p.L967	0.000	114	0%	161	36%	-	-	-	-	-	NULL
SORCS2	57537	genome.wustl.edu	37	4	7533312	7533312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020777.2	+1	reviewed	p.T202A	1.000	15	0%	12	41.7%	-	-	benign(0.144)	tolerated(0.29)	neutral(0.042)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
ZNF518B	85460	genome.wustl.edu	37	4	10446094	10446094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_053042.2	-1	validated	p.N620S	0.000	150	0%	210	42.9%	-	-	benign(0.01)	deleterious(0.03)	neutral(0.365)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10446304	10446304	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_053042.2	-1	validated	p.E550A	0.000	131	0%	162	36.4%	-	-	benign(0.188)	deleterious(0.03)	neutral(0.382)	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15517620	15517620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080522.2	+1	reviewed	p.Q337R	1.000	16	0%	24	45.8%	-	-	benign(0.097)	deleterious(0.04)	neutral(0.356)	NULL
CCDC149	91050	genome.wustl.edu	37	4	24854703	24854703	+	Silent	SNP	G	G	A	rs189184855	by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001130726.1	-1	validated	p.G121	0.075	156	0%	199	49.2%	-	-	-	-	-	HMMPfam_DUF2353
TBC1D19	55296	genome.wustl.edu	37	4	26741511	26741511	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018317.2	+1	validated	p.H381	1.000	166	0%	240	35.8%	-	-	-	-	-	HMMSmart_SM00164
TMEM156	80008	genome.wustl.edu	37	4	39033893	39033893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024943.1	-1	provisional	p.V14A	0.316	11	0%	11	45.5%	-	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
RFC1	5981	genome.wustl.edu	37	4	39314481	39314481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002913.3	-1	reviewed	p.E425G	1.000	416	0%	526	44.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
N4BP2	55728	genome.wustl.edu	37	4	40122672	40122672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018177.3	+1	reviewed	p.N981D	0.000	107	0%	117	35%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
CHIC2	26511	genome.wustl.edu	37	4	54880228	54880228	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012110.2	-1	reviewed	e4+2	1.000	118	0%	150	36.7%	-	-	-	-	-	-
PPAT	5471	genome.wustl.edu	37	4	57267604	57267604	+	Silent	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002703.3	-1	reviewed	p.R260	1.000	47	0%	40	12.5%	-	-	-	-	-	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
MUC7	4589	genome.wustl.edu	37	4	71346834	71346834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001145006.1	+1	reviewed	p.T125A	0.003	308	0%	452	35.4%	-	-	unknown(0)	tolerated(0.23)	-	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72363261	72363261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001134742.1	+1	reviewed	p.E673G	1.000	78	0%	131	49.6%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_HCO3_cotransp
ANKRD17	26057	genome.wustl.edu	37	4	73963911	73963911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032217.3	-1	reviewed	p.K1634E	0.993	310	0%	338	38.8%	-	-	benign(0.002)	tolerated(0.79)	neutral(0.001)	NULL
ANXA3	306	genome.wustl.edu	37	4	79525492	79525492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005139.2	+1	reviewed	p.L284P	1.000	121	0%	166	15.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
SLC10A6	345274	genome.wustl.edu	37	4	87744922	87744922	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_197965.2	-1	validated	p.G351	0.000	102	1%	108	25%	-	-	-	-	-	NULL
HSD17B11	51170	genome.wustl.edu	37	4	88261690	88261690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016245.3	-1	validated	p.K255R	0.989	115	0%	149	40.9%	-	-	benign(0.015)	tolerated(0.58)	neutral(0.005)	superfamily_NAD(P)-binding Rossmann-fold domains
DSPP	1834	genome.wustl.edu	37	4	88534435	88534435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014208.3	+1	reviewed	p.H366R	0.000	100	0%	138	33.3%	-	-	possibly_damaging(0.448)	-	-	NULL
HERC5	51191	genome.wustl.edu	37	4	89400504	89400504	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016323.2	+1	reviewed	p.E528A	0.943	58	0%	63	34.9%	-	-	benign(0.429)	tolerated(0.13)	neutral(0.392)	NULL
SLC9B1	150159	genome.wustl.edu	37	4	103806392	103806392	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001100874.1	-1	reviewed	p.*476Q	0.021	51	0%	85	32.9%	-	-	-	-	-	NULL
NPNT	255743	genome.wustl.edu	37	4	106863559	106863559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001033047.2	+1	validated	p.I287V	1.000	176	0%	237	34.2%	-	-	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	NULL
CAMK2D	817	genome.wustl.edu	37	4	114452441	114452441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001221.3	-1	reviewed	p.P178S	1.000	61	0%	86	36%	-	-	benign(0.242)	deleterious(0)	deleterious(0.469)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UGT8	7368	genome.wustl.edu	37	4	115586883	115586883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001128174.1	+1	validated	p.I338K	1.000	75	0%	94	60.6%	-	-	benign(0.326)	deleterious(0)	deleterious(0.546)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
FABP2	2169	genome.wustl.edu	37	4	120241914	120241917	+	Frame_Shift_Del	DEL	TGAC	TGAC	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	TGAC	TGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000134.3	-1	reviewed	p.V50fs	1.000:1.000:1.000:0.855	-	-	-	-	-	-	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
PRDM5	11107	genome.wustl.edu	37	4	121631520	121631520	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018699.2	-1	reviewed	p.R558*	1.000	89	0%	110	51.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIAA1109	84162	genome.wustl.edu	37	4	123130473	123130473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015312.3	+1	reviewed	p.R638C	1.000	44	0%	67	44.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAT4	79633	genome.wustl.edu	37	4	126367493	126367493	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024582.4	+1	validated	p.S2413	0.987	101	0%	126	48.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126372411	126372411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024582.4	+1	validated	p.S3414G	1.000	157	0%	247	10.1%	-	-	probably_damaging(0.959)	tolerated(0.1)	deleterious(0.689)	HMMPfam_Cadherin,superfamily_Cadherin-like
LARP1B	55132	genome.wustl.edu	37	4	129120621	129120621	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018078.2	+1	reviewed	p.G677	0.004	90	0%	96	36.5%	-	-	-	-	-	NULL
C4orf49	84709	genome.wustl.edu	37	4	140201262	140201262	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032623.3	-1	validated	p.A17	0.998	7	0.000	12	0.667	-	-	-	-	-	NULL
INPP4B	8821	genome.wustl.edu	37	4	143159161	143159161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001101669.1	-1	reviewed	p.L231S	1.000	46	0%	75	33.3%	-	-	benign(0.174)	deleterious(0)	neutral(0.461)	NULL
USP38	84640	genome.wustl.edu	37	4	144106734	144106734	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032557.5	+1	validated	p.L44R	1.000	47	0%	34	52.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLR2	7097	genome.wustl.edu	37	4	154626227	154626227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003264.3	+1	reviewed	p.R723H	0.983	144	0%	210	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
NEK1	4750	genome.wustl.edu	37	4	170477248	170477248	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012224.1	-1	validated	e15-2	1.000	71	0%	76	46.1%	-	-	-	-	-	-
GALNT7	51809	genome.wustl.edu	37	4	174216618	174216618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017423.2	+1	reviewed	p.R276G	1.000	117	0%	168	36.9%	-	-	probably_damaging(0.956)	deleterious(0.02)	deleterious(0.782)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
HMGB2	3148	genome.wustl.edu	37	4	174253970	174253970	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001130688.1	-1	reviewed	e3+2	0.986	123	0%	146	31.5%	-	-	-	-	-	-
WWC2	80014	genome.wustl.edu	37	4	184166570	184166570	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024949.5	+1	validated	p.I202F	1.000	48	0%	55	36.4%	-	-	unknown(0)	-	-	NULL
CCDC111	201973	genome.wustl.edu	37	4	185593611	185593611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152683.2	+1	validated	p.L281V	0.998	57	0%	66	62.1%	-	-	benign(0.036)	tolerated(0.47)	neutral(0.013)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186379466	186379466	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152775.3	-1	validated	p.T759S	0.002	59	0%	86	32.6%	-	-	possibly_damaging(0.859)	tolerated(0.39)	neutral(0.348)	NULL
F11	2160	genome.wustl.edu	37	4	187206956	187206956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000128.3	+1	reviewed	p.V490A	0.996	118	0%	136	12.5%	-	-	benign(0.08)	tolerated(0.13)	neutral(0.258)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FRG1	2483	genome.wustl.edu	37	4	190874265	190874265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004477.2	+1	reviewed	p.K101R	1.000	61	0%	118	11.9%	-	-	benign(0.012)	tolerated(0.61)	neutral(0.005)	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1
ROPN1L	83853	genome.wustl.edu	37	5	10450183	10450183	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_031916.3	+1	reviewed	p.K125N	1.000	118	0%	147	14.3%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
CTNND2	1501	genome.wustl.edu	37	5	10981912	10981912	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001332.2	-1	validated	p.A1130	0.066	215	0%	260	34.2%	-	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13751251	13751251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001369.2	-1	reviewed	p.F3716S	1.000	108	0%	168	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM105B	90268	genome.wustl.edu	37	5	14678860	14678860	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138348.4	+1	validated	p.T100	0.116	54	0%	74	48.6%	-	-	-	-	-	NULL
FBXL7	23194	genome.wustl.edu	37	5	15616143	15616143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012304.3	+1	reviewed	p.T30fs	1.000	-	-	-	-	-	-	-	-	-	NULL
CDH12	1010	genome.wustl.edu	37	5	21765206	21765206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004061.3	-1	reviewed	p.N466D	1.000	74	0%	131	42.7%	-	-	possibly_damaging(0.664)	tolerated(0.07)	deleterious(0.554)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DROSHA	29102	genome.wustl.edu	37	5	31511249	31511249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013235.4	-1	validated	p.R442H	0.998	193	0.5%	233	48.1%	-	-	probably_damaging(0.994)	tolerated(0.21)	deleterious(0.496)	NULL
ZFR	51663	genome.wustl.edu	37	5	32415108	32415108	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016107.3	-1	validated	p.S250	1.000	76	0%	93	32.3%	-	-	-	-	-	NULL
NPR3	4883	genome.wustl.edu	37	5	32712508	32712508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000908.2	+1	validated	p.L209P	1.000	66	0%	48	16.7%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
IL7R	3575	genome.wustl.edu	37	5	35874557	35874557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002185.2	+1	reviewed	p.M238T	0.001	99	0%	134	21.6%	-	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
SLC1A3	6507	genome.wustl.edu	37	5	36629691	36629691	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004172.4	+1	reviewed	e2+2	1.000	290	0%	442	34.8%	-	-	-	-	-	-
NIPBL	25836	genome.wustl.edu	37	5	37022456	37022456	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133433.3	+1	reviewed	p.A1846	0.995	18	0%	29	34.5%	-	-	-	-	-	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37157443	37157443	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000388739	-1	known	p.P1577	0.000	30	0%	43	46.5%	-	-	-	-	-	NULL
WDR70	55100	genome.wustl.edu	37	5	37480045	37480045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018034.2	+1	provisional	p.C266R	1.000	230	0%	202	44.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40_like
PTGER4	5734	genome.wustl.edu	37	5	40681099	40681099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000958.2	+1	reviewed	p.S2P	0.711	57	0%	52	48.1%	-	-	benign(0.107)	deleterious(0)	neutral(0.453)	NULL
C6	729	genome.wustl.edu	37	5	41176786	41176786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000065.2	-1	reviewed	p.M320T	1.000	141	0%	155	40.6%	-	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_MACPF,HMMSmart_MACPF
HMGCS1	3157	genome.wustl.edu	37	5	43299013	43299013	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098272.1	-1	validated	p.I19F	1.000	119	0%	158	33.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like
LOC728931	728931	genome.wustl.edu	37	5	43588318	43588318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_002342502.1	-1	model	p.A202V	0.999	9	0.000	8	0.500	-	-	-	-	-	HMMPfam_SAM_decarbox
HCN1	348980	genome.wustl.edu	37	5	45303860	45303860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021072.2	-1	validated	p.M487V	1.000	110	0%	161	39.1%	-	-	benign(0.006)	tolerated(1)	-	HMMSmart_cNMP,superfamily_cNMP_binding
DEPDC1B	55789	genome.wustl.edu	37	5	59982913	59982913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018369.2	-1	validated	p.G64C	1.000	155	0%	224	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
C5orf44	80006	genome.wustl.edu	37	5	64960104	64960104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001093755.1	+1	validated	p.N348D	0.214	128	0%	160	33.8%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
CCNB1	891	genome.wustl.edu	37	5	68463091	68463091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_031966.2	+1	reviewed	p.M1T	1.000	56	0%	53	41.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GTF2H2D	730394	genome.wustl.edu	37	5	68868311	68868311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001042490.3	+1	provisional	p.V135A	1.000	158	0%	218	19.3%	-	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	HMMSmart_SM00327,HMMPfam_Ssl1,superfamily_vWA-like
MAP1B	4131	genome.wustl.edu	37	5	71490799	71490799	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005909.3	+1	validated	p.A539	0.868	186	0%	191	45%	-	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495599	71495599	+	Silent	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005909.3	+1	validated	p.G2139	0.692	206	0%	242	50%	-	-	-	-	-	NULL
TMEM171	134285	genome.wustl.edu	37	5	72419385	72419385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173490.6	+1	validated	p.A62V	0.000	33	0%	37	54.1%	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
POLK	51426	genome.wustl.edu	37	5	74865169	74865169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016218.2	+1	validated	p.D87G	1.000	79	0%	94	28.7%	-	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	superfamily_DNA/RNA polymerases
F2RL1	2150	genome.wustl.edu	37	5	76128808	76128808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005242.4	+1	validated	p.I126V	0.847	260	0%	288	32.6%	-	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CMYA5	202333	genome.wustl.edu	37	5	79034841	79034841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153610.3	+1	validated	p.Q3418R	1.000	371	0%	455	33.8%	-	-	possibly_damaging(0.763)	deleterious(0)	deleterious(0.728)	NULL
VCAN	1462	genome.wustl.edu	37	5	82816028	82816028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004385.4	+1	reviewed	p.F635L	0.000	243	0%	267	44.6%	-	-	benign(0.031)	tolerated(0.44)	neutral(0.014)	NULL
GPR98	84059	genome.wustl.edu	37	5	89910697	89910697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032119.3	+1	reviewed	p.L23P	0.940	50	0%	66	45.5%	-	-	benign(0.165)	tolerated(0.09)	neutral(0.311)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89989993	89989993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032119.3	+1	reviewed	p.V2474I	0.000	89	0%	106	35.8%	-	-	benign(0.059)	tolerated(0.59)	neutral(0.009)	NULL
PAM	5066	genome.wustl.edu	37	5	102360942	102360942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000919.3	+1	reviewed	p.P865S	0.996	52	0%	101	42.6%	-	-	benign(0)	tolerated(0.91)	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114482917	114482917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018700.3	-1	reviewed	p.D158G	1.000	130	0%	179	30.2%	-	-	benign(0.011)	tolerated(0.33)	neutral(0.025)	superfamily_RING/U-box
DMXL1	1657	genome.wustl.edu	37	5	118465057	118465057	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005509.4	+1	validated	p.E418	1.000	33	0%	56	37.5%	-	-	-	-	-	superfamily_WD40 repeat-like
HSD17B4	3295	genome.wustl.edu	37	5	118844941	118844941	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000414.2	+1	reviewed	e16+2	0.992	132	0%	171	47.4%	-	-	-	-	-	-
FTMT	94033	genome.wustl.edu	37	5	121187902	121187902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_177478.1	+1	validated	p.R82S	1.000	20	0%	37	29.7%	-	-	probably_damaging(0.977)	tolerated(0.12)	deleterious(0.679)	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
CEP120	153241	genome.wustl.edu	37	5	122722238	122722238	+	Silent	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153223.3	-1	reviewed	p.P518	0.995	61	0%	97	39.2%	-	-	-	-	-	NULL
ZNF608	57507	genome.wustl.edu	37	5	123983453	123983453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020747.2	-1	validated	p.R875H	1.000	131	0%	156	53.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC27A6	28965	genome.wustl.edu	37	5	128351628	128351628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001017372.1	+1	reviewed	p.I340M	0.000	147	0%	141	44%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_AMP-binding,superfamily_SSF56801
ADAMTS19	171019	genome.wustl.edu	37	5	128796104	128796104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133638.3	+1	reviewed	p.M1T	1.000	20	0%	32	37.5%	-	-	benign(0.043)	-	-	NULL
ADAMTS19	171019	genome.wustl.edu	37	5	129037265	129037265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133638.3	+1	reviewed	p.E1041*	1.000	81	0%	75	42.7%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SEC24A	10802	genome.wustl.edu	37	5	133997278	133997278	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021982.1	+1	validated	e2+2	1.000	50	0%	29	17.2%	-	-	-	-	-	-
CATSPER3	347732	genome.wustl.edu	37	5	134345169	134345169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178019.2	+1	validated	p.M309V	1.000	37	0%	27	44.4%	-	-	benign(0.258)	tolerated(0.23)	neutral(0.069)	NULL
CXCL14	9547	genome.wustl.edu	37	5	134914147	134914147	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004887.4	-1	reviewed	p.P61	0.995	52	0%	49	34.7%	-	-	-	-	-	superfamily_Interleukin 8-like chemokines
FBXL21	26223	genome.wustl.edu	37	5	135272639	135272639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012159.4	+1	validated	p.V119A	1.000	84	0%	101	48.5%	-	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	superfamily_F-box domain
SPOCK1	6695	genome.wustl.edu	37	5	136448186	136448186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004598.3	-1	reviewed	p.P138S	1.000	72	0%	94	39.4%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMSmart_KAZAL,HMMPfam_Kazal_2,superfamily_SSF100895
KDM3B	51780	genome.wustl.edu	37	5	137715346	137715346	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016604.3	+1	validated	p.V218	0.998	79	0%	101	34.7%	-	-	-	-	-	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139917700	139917700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020690.4	+1	reviewed	p.M2420V	1.000	298	0%	288	36.5%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
PCDHA5	56143	genome.wustl.edu	37	5	140202909	140202909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018908.2	+1	reviewed	p.Y517H	0.392	27	0%	20	55%	-	-	benign(0.085)	tolerated(0.2)	neutral(0.055)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB3	56132	genome.wustl.edu	37	5	140480750	140480750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018937.2	+1	reviewed	p.T173A	0.000	147	0%	99	32.3%	-	-	benign(0.005)	deleterious(0)	neutral(0.445)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531474	140531474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018939.2	+1	reviewed	p.R546C	0.977	121	0%	135	47.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGB3	56102	genome.wustl.edu	37	5	140751822	140751822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018924.2	+1	reviewed	p.L621M	0.020	37	0%	31	32.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768701	140768701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003736.2	+1	reviewed	p.N417S	0.954	134	0%	118	38.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788482	140788482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018926.2	+1	reviewed	p.N238S	0.998	54	0%	30	60%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
KIAA0141	9812	genome.wustl.edu	37	5	141313951	141313951	+	Silent	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000507481	+1	known	p.Q50P	0.261	144	0%	141	39.7%	-	-	-	-	-	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
LARS	51520	genome.wustl.edu	37	5	145523018	145523018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020117.9	-1	reviewed	p.G612R	1.000	387	0%	576	44.3%	-	-	benign(0.359)	tolerated(0.07)	neutral(0.433)	superfamily_Nucleotidylyl transferase
PPARGC1B	133522	genome.wustl.edu	37	5	149216457	149216459	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133263.3	+1	reviewed	p.E817in_frame_del	0.792:0.855:0.852	-	-	-	-	-	-	-	-	-	NULL
GM2A	2760	genome.wustl.edu	37	5	150646364	150646364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000405.4	+1	reviewed	p.C106R	1.000	149	0%	158	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ML,superfamily_SSF63707
SOX30	11063	genome.wustl.edu	37	5	157053644	157053644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178424.1	-1	reviewed	p.Y656H	1.000	148	0%	178	37.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CCNJL	79616	genome.wustl.edu	37	5	159686623	159686623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024565.5	-1	validated	p.T194A	1.000	76	0%	52	34.6%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
WWC1	23286	genome.wustl.edu	37	5	167798537	167798537	+	Silent	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015238.2	+1	reviewed	p.T76	1.000	50	0%	51	23.5%	-	-	-	-	-	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain
ENSG00000251133	0	genome.wustl.edu	37	5	175716537	175716537	+	RNA	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000505928	-1	novel	NULL	0.001	46	0%	27	37%	-	-	-	-	-	-
CDHR2	54825	genome.wustl.edu	37	5	176016058	176016058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017675.4	+1	reviewed	p.N961K	0.000	126	0%	98	30.6%	-	-	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DOK3	79930	genome.wustl.edu	37	5	176931310	176931310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024872.2	-1	validated	p.S389G	0.994	19	0.000	9	0.444	-	-	probably_damaging(0.955)	tolerated(0.06)	deleterious(0.721)	NULL
GRM6	2916	genome.wustl.edu	37	5	178418514	178418515	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000843.3	-1	reviewed	p.P257fs	0.998:0.996	-	-	-	-	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
TRIM7	81786	genome.wustl.edu	37	5	180622642	180622642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_203293.1	-1	reviewed	p.R354C	1.000	31	0%	32	31.2%	-	-	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	HMMSmart_SM00589
FOXF2	2295	genome.wustl.edu	37	6	1390647	1390647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001452.1	+1	reviewed	p.N155K	1.000	11	0%	38	44.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
PRPF4B	8899	genome.wustl.edu	37	6	4044125	4044125	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003913.4	+1	reviewed	p.R577*	1.000	141	0%	182	53.3%	-	-	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7580793	7580793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004415.2	+1	reviewed	p.M1457K	0.997	194	0%	207	47.8%	-	-	benign(0)	tolerated(1)	-	NULL
KDM1B	221656	genome.wustl.edu	37	6	18218066	18218066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153042.3	+1	validated	p.Y547H	1.000	232	0%	303	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amino_oxidase,superfamily_SSF51905
TDP2	51567	genome.wustl.edu	37	6	24653222	24653222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016614.2	-1	reviewed	p.R266G	1.000	204	0%	256	28.5%	-	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
SCGN	10590	genome.wustl.edu	37	6	25701506	25701506	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006998.3	+1	reviewed	p.D258	1.000	120	0%	156	42.3%	-	-	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand
HIST1H3A	8350	genome.wustl.edu	37	6	26020786	26020786	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003529.2	+1	reviewed	p.T23	1.000	28	0%	46	32.6%	-	-	-	-	-	superfamily_Histone-fold
HIST1H2BD	3017	genome.wustl.edu	37	6	26158488	26158488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021063.2	+1	reviewed	p.K31E	1.000	136	0%	142	35.9%	-	-	benign(0.223)	deleterious(0)	neutral(0.467)	HMMSmart_SM00427,superfamily_Histone-fold
PPP1R10	5514	genome.wustl.edu	37	6	30573698	30573698	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002714.2	-1	reviewed	e8+2	1.000	250	0%	289	31.8%	-	-	-	-	-	-
MDC1	9656	genome.wustl.edu	37	6	30681012	30681012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014641.2	-1	reviewed	p.A236V	0.006	159	0%	187	54%	-	-	unknown(0)	deleterious(0)	-	NULL
CLIC1	1192	genome.wustl.edu	37	6	31701662	31701662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001288.4	-1	reviewed	p.D76N	1.000	137	0%	159	37.1%	-	-	possibly_damaging(0.806)	tolerated(0.07)	deleterious(0.623)	superfamily_Thioredoxin-like
TNXB	7148	genome.wustl.edu	37	6	32041612	32041612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_019105.6	-1	reviewed	p.E1498G	0.890	48	0%	33	39.4%	-	-	possibly_damaging(0.763)	deleterious(0.02)	deleterious(0.666)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ATF6B	1388	genome.wustl.edu	37	6	32088819	32088819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004381.4	-1	reviewed	p.P216H	0.032	89	0%	101	37.6%	-	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	NULL
PSMB8	5696	genome.wustl.edu	37	6	32809342	32809342	+	Silent	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_148919.3	-1	reviewed	p.T236	0.998	115	0%	99	41.4%	-	-	-	-	-	HMMPfam_Proteasome,superfamily_SSF56235
BAK1	578	genome.wustl.edu	37	6	33541922	33541922	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001188.3	-1	reviewed	p.L140	0.000	19	0%	24	33.3%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_Bcl-2,HMMSmart_SM00337,superfamily_Bcl-2 inhibitors of programmed cell death
ITPR3	3710	genome.wustl.edu	37	6	33632745	33632745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002224.2	+1	validated	p.M416T	1.000	26	0%	28	32.1%	-	-	possibly_damaging(0.794)	tolerated(0.1)	deleterious(0.585)	HMMPfam_MIR,superfamily_MIR
ARMC12	221481	genome.wustl.edu	37	6	35705886	35705886	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145028.3	+1	predicted	p.D109	0.943	75	0%	78	26.9%	-	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
KCTD20	222658	genome.wustl.edu	37	6	36447385	36447385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000265344	+1	known	p.V94A	1.000	97	0%	123	31.7%	-	-	unknown(0)	-	-	NULL
SRSF3	6428	genome.wustl.edu	37	6	36564615	36564615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003017.4	+1	validated	p.L26V	0.999	159	0%	197	33.5%	-	-	possibly_damaging(0.547)	tolerated(0.23)	neutral(0.227)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MDGA1	266727	genome.wustl.edu	37	6	37622143	37622143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153487.3	-1	validated	p.S297P	0.998	52	0%	47	61.7%	-	-	possibly_damaging(0.667)	deleterious(0.03)	deleterious(0.601)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LRFN2	57497	genome.wustl.edu	37	6	40399738	40399738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020737.1	-1	provisional	p.V372A	1.000	24	0%	22	36.4%	-	-	possibly_damaging(0.725)	tolerated(0.07)	deleterious(0.583)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LRFN2	57497	genome.wustl.edu	37	6	40400695	40400695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020737.1	-1	provisional	p.R53Q	1.000	29	0%	31	54.8%	-	-	possibly_damaging(0.843)	tolerated(0.05)	deleterious(0.668)	superfamily_L domain-like
TREML2	79865	genome.wustl.edu	37	6	41162226	41162226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024807.2	-1	validated	p.T241I	0.004	16	0%	17	41.2%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TREML4	285852	genome.wustl.edu	37	6	41197370	41197370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000358696	+1	known	p.R153G	0.005	66	0%	72	33.3%	-	-	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
KLC4	89953	genome.wustl.edu	37	6	43034747	43034747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_201523.1	+1	validated	p.Y287H	1.000	46	0%	55	32.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
POLH	5429	genome.wustl.edu	37	6	43550150	43550150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006502.2	+1	reviewed	p.K32E	1.000	75	0%	149	31.5%	-	-	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
RUNX2	860	genome.wustl.edu	37	6	45459774	45459774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001024630.3	+1	reviewed	p.V329A	1.000	189	0%	246	50.4%	-	-	benign(0.34)	tolerated(0.59)	neutral(0.112)	NULL
MUT	4594	genome.wustl.edu	37	6	49419255	49419255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000255.3	-1	reviewed	p.P419H	1.000	84	0%	176	46%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,superfamily_Cobalamin (vitamin B12)-dependent enzymes
PKHD1	5314	genome.wustl.edu	37	6	51613268	51613268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138694.3	-1	reviewed	p.H3049R	0.999	215	0%	277	33.2%	-	-	probably_damaging(0.963)	tolerated(0.06)	deleterious(0.728)	HMMSmart_SM00710,superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51732848	51732848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138694.3	-1	reviewed	p.F2516L	1.000	103	0%	134	35.8%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
HCRTR2	3062	genome.wustl.edu	37	6	55128525	55128525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001526.3	+1	reviewed	p.Y223H	1.000	34	0%	38	21.1%	-	-	benign(0.367)	deleterious(0)	deleterious(0.561)	HMMPfam_7tm_1,superfamily_SSF81321
DDX43	55510	genome.wustl.edu	37	6	74116158	74116158	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018665.2	+1	reviewed	p.T293	0.914	60	0%	67	20.9%	-	-	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
TTK	7272	genome.wustl.edu	37	6	80732089	80732089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003318.4	+1	reviewed	p.Q386R	0.006	177	0%	233	37.8%	-	-	benign(0.149)	tolerated(0.26)	neutral(0.047)	NULL
TTK	7272	genome.wustl.edu	37	6	80751905	80751905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003318.4	+1	reviewed	p.R854G	0.014	64	0%	134	44%	-	-	possibly_damaging(0.917)	tolerated(0.15)	deleterious(0.609)	NULL
IBTK	25998	genome.wustl.edu	37	6	82904194	82904194	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015525.2	-1	reviewed	e22+2	0.990	61	0%	92	35.9%	-	-	-	-	-	-
KLHL32	114792	genome.wustl.edu	37	6	97562121	97562121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052904.3	+1	validated	p.A364T	1.000	83	0%	64	48.4%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
USP45	85015	genome.wustl.edu	37	6	99914615	99914615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080481.1	-1	provisional	p.M347T	1.000	90	0%	108	23.1%	-	-	probably_damaging(0.992)	tolerated(0.25)	deleterious(0.484)	HMMPfam_UCH,superfamily_Cysteine proteinases
AKD1	221264	genome.wustl.edu	37	6	109850251	109850251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000424296	-1	known	p.A278V	1.000	137	0%	203	39.9%	-	-	probably_damaging(0.977)	tolerated(0.8)	neutral(0.419)	superfamily_SSF52540
LOC441166	441166	genome.wustl.edu	37	6	111179990	111179990	+	RNA	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XR_016728.3	+1	model	NULL	0.672	52	0%	46	15.2%	-	-	-	-	-	-
NKAIN2	154215	genome.wustl.edu	37	6	124604204	124604204	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001040214.1	+1	reviewed	p.P36	0.985	224	0%	330	31.5%	-	-	-	-	-	HMMPfam_NKAIN
L3MBTL3	84456	genome.wustl.edu	37	6	130442079	130442079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032438.1	+1	validated	p.M648L	0.909	138	0%	258	31.4%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
CTGF	1490	genome.wustl.edu	37	6	132271177	132271177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001901.2	-1	reviewed	p.T222N	1.000	37	0%	39	48.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
VNN1	8876	genome.wustl.edu	37	6	133014259	133014259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004666.2	-1	reviewed	p.H244Y	1.000	127	0%	147	38.8%	-	-	benign(0.268)	deleterious(0.02)	neutral(0.412)	superfamily_Ntlse/CNhydtse
VNN2	8875	genome.wustl.edu	37	6	133065598	133065598	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004665.2	-1	reviewed	p.N468	0.332	109	0%	138	42.8%	-	-	-	-	-	NULL
SLC18B1	116843	genome.wustl.edu	37	6	133092030	133092030	+	Missense_Mutation	SNP	T	T	C	rs181766051	by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052831.2	-1	validated	p.R435G	0.973	160	0%	298	43%	-	-	benign(0.254)	deleterious(0.03)	neutral(0.391)	superfamily_MFS general substrate transporter
FBXO30	84085	genome.wustl.edu	37	6	146125969	146125969	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032145.4	-1	reviewed	p.Q525*	1.000	260	0%	384	41.7%	-	-	-	-	-	NULL
GRM1	2911	genome.wustl.edu	37	6	146755413	146755413	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000838.3	+1	reviewed	p.Q1022	0.012	76	0%	73	32.9%	-	-	-	-	-	NULL
KATNA1	11104	genome.wustl.edu	37	6	149916232	149916232	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007044.2	-1	reviewed	p.S472	0.954	100	0%	120	35%	-	-	-	-	-	HMMPfam_Vps4_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
KATNA1	11104	genome.wustl.edu	37	6	149919454	149919454	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007044.2	-1	reviewed	p.I307	1.000	124	0%	110	32.7%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRP11	84918	genome.wustl.edu	37	6	150164193	150164193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032832.5	-1	validated	p.V280A	1.000	63	0%	52	51.9%	-	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	HMMSmart_SM00089
AKAP12	9590	genome.wustl.edu	37	6	151672475	151672475	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005100.3	+1	reviewed	p.G983	0.323	117	0%	129	34.1%	-	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152589256	152589256	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182961.2	-1	reviewed	p.S6250	0.949	119	0%	145	37.2%	-	-	-	-	-	HMMSmart_SM00150
PLG	5340	genome.wustl.edu	37	6	161155027	161155027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000301.3	+1	reviewed	p.Y530H	1.000	64	0%	86	38.4%	-	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1
RPS6KA2	6196	genome.wustl.edu	37	6	166904175	166904175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001006932.1	-1	reviewed	p.M276V	0.987	10	0%	12	33.3%	-	-	benign(0.021)	tolerated(0.16)	neutral(0.060)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TTLL2	83887	genome.wustl.edu	37	6	167754346	167754346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_031949.4	+1	validated	p.C320S	0.928	333	0%	347	37.5%	-	-	probably_damaging(1)	tolerated(0.51)	deleterious(0.509)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
CARD11	84433	genome.wustl.edu	37	7	2983932	2983932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032415.3	-1	validated	p.D200N	1.000	105	0%	38	60.5%	-	-	benign(0.208)	deleterious(0)	neutral(0.465)	NULL
ACTB	60	genome.wustl.edu	37	7	5568298	5568298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001101.3	-1	reviewed	p.V139A	1.000	46	0%	20	80%	-	-	benign(0)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
CCZ1B	221960	genome.wustl.edu	37	7	6854430	6854430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198097.2	-1	predicted	p.T249A	1.000	95	0%	55	49.1%	-	-	possibly_damaging(0.905)	tolerated(0.13)	deleterious(0.612)	HMMPfam_DUF2049
PHF14	9678	genome.wustl.edu	37	7	11075380	11075381	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000303905	+1	known	p.K527fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HDAC9	9734	genome.wustl.edu	37	7	18868811	18868811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178425.2	+1	reviewed	p.G784C	1.000	160	0%	111	12.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
KLHL7	55975	genome.wustl.edu	37	7	23164783	23164783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001031710.2	+1	reviewed	p.N145S	1.000	63	0%	46	84.8%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
MPP6	51678	genome.wustl.edu	37	7	24727082	24727082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016447.2	+1	provisional	p.D491G	1.000	125	0.8%	113	86.7%	-	-	benign(0.011)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
NOD1	10392	genome.wustl.edu	37	7	30490878	30490878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006092.2	-1	reviewed	p.G719S	1.000	15	0.000	7	1.000	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
GLI3	2737	genome.wustl.edu	37	7	42088271	42088271	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000168.5	-1	reviewed	p.P166	0.871	56	0%	30	73.3%	-	-	-	-	-	NULL
GTF2I	2969	genome.wustl.edu	37	7	74105436	74105436	+	Silent	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032999.2	+1	reviewed	p.V77	0.396	112	0%	105	37.1%	-	-	-	-	-	NULL
PION	54103	genome.wustl.edu	37	7	77004377	77004377	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017439.3	-1	validated	p.F261fs	0.971	-	-	-	-	-	-	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77531192	77531192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001127357.1	+1	validated	p.S100P	1.000	12	0%	17	41.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PCLO	27445	genome.wustl.edu	37	7	82430854	82430854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033026.5	-1	validated	p.V4996A	0.142	37	0%	51	35.3%	-	-	unknown(0)	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91625067	91625067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005751.4	+1	reviewed	p.T295A	1.000	25	0%	64	35.9%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97822474	97822474	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014916.3	+1	reviewed	p.S899	0.000	89	0%	91	24.2%	-	-	-	-	-	NULL
TMEM130	222865	genome.wustl.edu	37	7	98460814	98460814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001134450.1	-1	validated	p.V99M	0.000	110	0%	98	45.9%	-	-	benign(0.006)	tolerated(0.17)	neutral(0.059)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98609005	98609005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003496.2	+1	validated	p.I3685M	0.962	131	0%	115	35.7%	-	-	benign(0.382)	tolerated(0.11)	neutral(0.394)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
OR2AE1	81392	genome.wustl.edu	37	7	99474116	99474116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005276.1	-1	provisional	p.F181L	0.082	129	0%	151	31.1%	-	-	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_7tm_1,superfamily_SSF81321
FBXO24	26261	genome.wustl.edu	37	7	100187982	100187982	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033506.2	+1	reviewed	e3+2	1.000	133	0%	124	46.8%	-	-	-	-	-	-
SRRT	51593	genome.wustl.edu	37	7	100485886	100485886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015908.5	+1	validated	p.V813I	1.000	78	0%	86	47.7%	-	-	possibly_damaging(0.873)	tolerated(0.34)	neutral(0.362)	HMMPfam_ARS2
MUC17	140453	genome.wustl.edu	37	7	100682084	100682084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001040105.1	+1	provisional	p.V2463F	0.007	317	0%	332	45.2%	-	-	possibly_damaging(0.916)	-	-	NULL
LRRC17	10234	genome.wustl.edu	37	7	102579934	102579934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001031692.2	+1	validated	p.Y277S	0.998	97	0%	163	34.4%	-	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
PMPCB	9512	genome.wustl.edu	37	7	102952581	102952581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000428154	+1	known	p.K470E	1.000	229	0%	315	33%	-	-	benign(0.003)	tolerated(0.91)	-	superfamily_LuxS/MPP-like metallohydrolase
SLC26A5	375611	genome.wustl.edu	37	7	103061828	103061828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198999.2	-1	reviewed	p.K45T	1.000	76	0%	83	38.6%	-	-	possibly_damaging(0.912)	deleterious(0.04)	deleterious(0.712)	NULL
MLL5	55904	genome.wustl.edu	37	7	104717611	104717611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018682.3	+1	reviewed	p.N324H	1.000	168	0%	200	50.5%	-	-	benign(0.109)	deleterious(0.05)	neutral(0.354)	HMMPfam_SET
HBP1	26959	genome.wustl.edu	37	7	106827090	106827090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012257.3	+1	validated	p.C243W	1.000	169	0%	191	44%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain
METTL2B	55798	genome.wustl.edu	37	7	128128475	128128475	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000419443	+1	known	p.T79A	0.000	12	0%	13	30.8%	-	-	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131866877	131866877	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020911.1	-1	validated	p.H1077	0.418	56	0%	36	36.1%	-	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
WDR91	29062	genome.wustl.edu	37	7	134871760	134871760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014149.3	-1	validated	p.M681I	1.000	120	0%	113	39.8%	-	-	possibly_damaging(0.452)	tolerated(0.29)	neutral(0.177)	superfamily_WD40 repeat-like
KIAA1549	57670	genome.wustl.edu	37	7	138591663	138591663	+	Splice_Site	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020910.2	-1	validated	e5+2	1.000	85	0%	102	50%	-	-	-	-	-	-
CLEC2L	154790	genome.wustl.edu	37	7	139225185	139225185	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080511.2	+1	inferred	p.C128	0.995	9	0.000	6	0.667	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
ADCK2	90956	genome.wustl.edu	37	7	140373833	140373833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052853.3	+1	validated	p.A235T	0.006	27	0%	36	36.1%	-	-	benign(0.025)	tolerated(0.51)	neutral(0.010)	HMMPfam_ABC1
GSTK1	373156	genome.wustl.edu	37	7	142962103	142962103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001143679.1	+1	reviewed	p.R101H	0.991	90	0%	68	33.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DSBA,superfamily_Thiordxn-like_fd
EPHA1	2041	genome.wustl.edu	37	7	143095907	143095907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005232.4	-1	reviewed	p.G375C	0.261	28	0%	31	45.2%	-	-	possibly_damaging(0.841)	tolerated(0.06)	deleterious(0.644)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CTAGE6P	340307	genome.wustl.edu	37	7	143453340	143453340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178561.4	-1	validated	p.T471I	0.441	504	0%	700	15.3%	-	-	-	-	-	NULL
PDIA4	9601	genome.wustl.edu	37	7	148701212	148701212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004911.4	-1	validated	p.I538V	1.000	80	0%	70	42.9%	-	-	benign(0)	tolerated(0.81)	neutral(0.001)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ZNF862	643641	genome.wustl.edu	37	7	149545505	149545505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099220.1	+1	provisional	p.V308A	0.049	23	0%	17	70.6%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
ERICH1	157697	genome.wustl.edu	37	8	623979	623979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_207332.1	-1	provisional	p.N125D	0.003	36	0%	36	38.9%	-	-	probably_damaging(0.99)	tolerated(0.26)	deleterious(0.476)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1497554	1497554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004745.3	+1	reviewed	p.P232L	0.995	77	0%	48	43.8%	-	-	possibly_damaging(0.81)	tolerated(0.08)	deleterious(0.605)	NULL
XKR6	286046	genome.wustl.edu	37	8	10755611	10755611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173683.3	-1	provisional	p.R593*	1.000	177	0%	169	15.4%	-	-	-	-	-	NULL
LONRF1	91694	genome.wustl.edu	37	8	12586561	12586561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152271.3	-1	provisional	p.Y620C	1.000	116	0%	170	37.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LON,HMMSmart_SM00464
LONRF1	91694	genome.wustl.edu	37	8	12592793	12592793	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152271.3	-1	provisional	e7+2	1.000	13	0%	19	26.3%	-	-	-	-	-	-
PCM1	5108	genome.wustl.edu	37	8	17883071	17883071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006197.3	+1	validated	p.M1985V	1.000	41	0%	40	40%	-	-	benign(0.012)	tolerated(0.2)	neutral(0.050)	NULL
NAT1	9	genome.wustl.edu	37	8	18080344	18080344	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000662.5	+1	reviewed	p.I263R	0.967	107	0%	174	24.7%	-	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
PSD3	23362	genome.wustl.edu	37	8	18393309	18393309	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015310.3	-1	validated	p.S1030T	1.000	127	0%	127	52.8%	-	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22140607	22140607	+	Silent	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001135721.1	+1	validated	p.G162	0.006	78	0%	55	36.4%	-	-	-	-	-	NULL
SLC39A14	23516	genome.wustl.edu	37	8	22273407	22273407	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001128431.2	+1	validated	p.S292	0.000	96	0%	87	29.9%	-	-	-	-	-	HMMPfam_Zip
RHOBTB2	23221	genome.wustl.edu	37	8	22865139	22865139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015178.2	+1	validated	p.R461C	1.000	85	0%	102	14.7%	-	-	benign(0.2)	tolerated(0.11)	neutral(0.291)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
DOCK5	80005	genome.wustl.edu	37	8	25161825	25161825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024940.6	+1	validated	p.H344R	1.000	22	0%	42	40.5%	-	-	probably_damaging(0.981)	tolerated(0.29)	neutral(0.455)	NULL
DOCK5	80005	genome.wustl.edu	37	8	25183061	25183061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024940.6	+1	validated	p.N634S	1.000	121	0%	149	47%	-	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
KIF13B	23303	genome.wustl.edu	37	8	29023177	29023177	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015254.3	-1	validated	e12+2	1.000	64	0%	63	30.2%	-	-	-	-	-	-
MAK16	84549	genome.wustl.edu	37	8	33354213	33354213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032509.3	+1	validated	p.D198G	0.982	29	0%	41	31.7%	-	-	benign(0.025)	tolerated(0.2)	neutral(0.050)	HMMPfam_Mak16
STAR	6770	genome.wustl.edu	37	8	38008285	38008285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000349.2	-1	reviewed	p.R18C	1.000	118	0.8%	148	10.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDHD2	23259	genome.wustl.edu	37	8	38090631	38090631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015214.2	+1	validated	p.V40A	0.997	61	0%	56	26.8%	-	-	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_WWE
DDHD2	23259	genome.wustl.edu	37	8	38091919	38091919	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015214.2	+1	validated	p.G76	0.712	124	0%	138	37.7%	-	-	-	-	-	HMMPfam_WWE
ADAM2	2515	genome.wustl.edu	37	8	39607213	39607213	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001464.3	-1	reviewed	p.C616	0.035	76	0%	79	54.4%	-	-	-	-	-	HMMPfam_EGF_2
ANK1	286	genome.wustl.edu	37	8	41530248	41530248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142446.1	-1	reviewed	p.T1615A	1.000	66	0%	64	29.7%	-	-	benign(0.323)	tolerated(0.21)	neutral(0.145)	NULL
FNTA	2339	genome.wustl.edu	37	8	42932469	42932469	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002027.2	+1	reviewed	p.T248	0.963	68	0%	79	46.8%	-	-	-	-	-	HMMPfam_PPTA,superfamily_Protein prenylyltransferase
SGK196	84197	genome.wustl.edu	37	8	42977654	42977654	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032237.3	+1	validated	p.D229	0.910	57	0%	54	14.8%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
PRKDC	5591	genome.wustl.edu	37	8	48716000	48716000	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001081640.1	-1	validated	p.I3263T	0.048	181	0%	228	41.2%	-	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48848923	48848923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000314191	-1	known	p.Y423C	1.000	119	0%	122	46.7%	-	-	possibly_damaging(0.939)	tolerated(0.12)	deleterious(0.645)	superfamily_ARM repeat
FAM110B	90362	genome.wustl.edu	37	8	59059421	59059421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_147189.2	+1	validated	p.P211H	1.000	76	0%	78	48.7%	-	-	possibly_damaging(0.927)	tolerated(0.13)	deleterious(0.627)	NULL
TRIM55	84675	genome.wustl.edu	37	8	67066340	67066340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_184085.1	+1	reviewed	p.A432V	0.668	153	0%	206	24.8%	-	-	benign(0.071)	deleterious(0)	neutral(0.450)	NULL
ADHFE1	137872	genome.wustl.edu	37	8	67355031	67355031	+	Splice_Site	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144650.2	+1	validated	e3-2	1.000	129	0%	171	30.4%	-	-	-	-	-	-
CSPP1	79848	genome.wustl.edu	37	8	68084681	68084681	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001077204.1	+1	validated	p.F983	1.000	29	0%	53	45.3%	-	-	-	-	-	NULL
PREX2	80243	genome.wustl.edu	37	8	69136797	69136797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024870.2	+1	validated	p.A1571S	1.000	80	0%	99	50.5%	-	-	possibly_damaging(0.61)	tolerated(0.05)	deleterious(0.557)	NULL
SLCO5A1	81796	genome.wustl.edu	37	8	70617428	70617428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030958.2	-1	reviewed	p.V487A	1.000	209	0%	215	32.6%	-	-	possibly_damaging(0.917)	deleterious(0.02)	deleterious(0.751)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
NCOA2	10499	genome.wustl.edu	37	8	71069130	71069130	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006540.2	-1	validated	p.H490	1.000	66	0%	99	27.3%	-	-	-	-	-	NULL
DECR1	1666	genome.wustl.edu	37	8	91049094	91049094	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001359.1	+1	reviewed	p.T197	0.229	198	0%	321	34.3%	-	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
TMEM67	91147	genome.wustl.edu	37	8	94816991	94816991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153704.5	+1	reviewed	p.I775T	1.000	45	0%	70	25.7%	-	-	benign(0.386)	deleterious(0.01)	deleterious(0.529)	HMMPfam_Meckelin
LAPTM4B	55353	genome.wustl.edu	37	8	98837316	98837316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018407.4	+1	validated	p.Y271H	1.000	124	0%	133	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mtp
VPS13B	157680	genome.wustl.edu	37	8	100133663	100133663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017890.3	+1	reviewed	p.V399E	1.000	147	0%	209	31.1%	-	-	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	NULL
KLF10	7071	genome.wustl.edu	37	8	103664539	103664539	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005655.2	-1	validated	p.A41	0.962	99	0%	188	43.1%	-	-	-	-	-	NULL
LRP12	29967	genome.wustl.edu	37	8	105509287	105509287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013437.4	-1	reviewed	p.V498A	1.000	83	0%	83	53%	-	-	benign(0.215)	tolerated(0.07)	neutral(0.340)	superfamily_LDL receptor-like module
TTC35	9694	genome.wustl.edu	37	8	109462075	109462075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014673.3	+1	provisional	p.W22R	1.000	120	0%	143	47.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prenyl_trans
CYP11B2	1585	genome.wustl.edu	37	8	143994248	143994248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000498.3	-1	reviewed	p.L392P	1.000	46	0%	30	46.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
ZNF623	9831	genome.wustl.edu	37	8	144732948	144732948	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014789.3	+1	validated	p.H302	0.000	502	0%	435	35.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DOCK8	81704	genome.wustl.edu	37	9	463594	463594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_203447.3	+1	reviewed	p.N1981S	1.000	76	0%	93	29%	-	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_Ded_cyto
KANK1	23189	genome.wustl.edu	37	9	738488	738488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015158.2	+1	reviewed	p.K1179N	1.000	121	0%	102	46.1%	-	-	benign(0.395)	deleterious(0.02)	deleterious(0.510)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CDC37L1	55664	genome.wustl.edu	37	9	4684914	4684917	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AGAA	AGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017913.2	+1	validated	p.K58fs	1.000:0.996:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RCL1	10171	genome.wustl.edu	37	9	4827086	4827086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000381732	+1	known	p.N146S	0.000	77	0%	89	53.9%	-	-	unknown(0)	tolerated(0.43)	-	NULL
GLDC	2731	genome.wustl.edu	37	9	6588416	6588416	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000170.2	-1	reviewed	p.S564	1.000	135	0%	130	30%	-	-	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
GLDC	2731	genome.wustl.edu	37	9	6589220	6589220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000170.2	-1	reviewed	p.F519L	1.000	80	0%	93	28%	-	-	possibly_damaging(0.574)	deleterious(0.02)	deleterious(0.580)	NULL
NFIB	4781	genome.wustl.edu	37	9	14307296	14307296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005596.2	-1	validated	p.R85H	1.000	81	0%	112	46.4%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_MH1,HMMSmart_SM00523
MLLT3	4300	genome.wustl.edu	37	9	20413907	20413907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004529.2	-1	validated	p.A313T	0.937	102	0%	132	46.2%	-	-	possibly_damaging(0.901)	tolerated(0.12)	deleterious(0.617)	NULL
C9orf72	203228	genome.wustl.edu	37	9	27562388	27562388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018325.2	-1	validated	p.E197D	1.000	28	0%	61	39.3%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
KIF24	347240	genome.wustl.edu	37	9	34257619	34257619	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_194313.2	-1	validated	p.P662	0.027	130	0%	120	36.7%	-	-	-	-	-	NULL
KIAA1161	57462	genome.wustl.edu	37	9	34371522	34371522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000297625	-1	known	p.F440L	1.000	9	0.000	12	0.333	-	-	benign(0.017)	tolerated(0.62)	neutral(0.005)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
DNAI1	27019	genome.wustl.edu	37	9	34506854	34506854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012144.2	+1	reviewed	p.H431	1.000	27	0%	25	28%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
RPP25L	138716	genome.wustl.edu	37	9	34610991	34610991	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_148178.1	-1	validated	p.P101	0.499	37	0%	34	35.3%	-	-	-	-	-	superfamily_SSF82704
CCDC107	203260	genome.wustl.edu	37	9	35661109	35661109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_174923.1	+1	provisional	p.K259N	0.002	59	0%	46	41.3%	-	-	benign(0.003)	tolerated(0.05)	neutral(0.345)	NULL
TLN1	7094	genome.wustl.edu	37	9	35697899	35697899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006289.3	-1	reviewed	p.Q2505H	1.000	38	0%	35	17.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_I_LWEQ,HMMSmart_ILWEQ
HINT2	84681	genome.wustl.edu	37	9	35813291	35813291	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032593.2	-1	validated	p.A124	0.999	164	0%	163	44.8%	-	-	-	-	-	HMMPfam_HIT,superfamily_HIT-like
TMEM8B	51754	genome.wustl.edu	37	9	35852855	35852855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001042589.1	+1	provisional	p.V284A	1.000	123	0%	108	41.7%	-	-	probably_damaging(0.987)	tolerated(0.75)	neutral(0.438)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37740591	37740591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014907.2	+1	validated	p.L689P	0.121	64	0%	75	32%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
DCAF10	79269	genome.wustl.edu	37	9	37861389	37861389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024345.3	+1	validated	p.R522C	1.000	123	0%	153	11.1%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TRPM3	80036	genome.wustl.edu	37	9	73218282	73218282	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000396280	-1	known	p.P761S	0.014	100	0%	108	49.1%	-	-	-	-	-	HMMPfam_Ion_trans
TMEM2	23670	genome.wustl.edu	37	9	74345683	74345683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013390.2	-1	validated	p.G571S	0.988	149	0%	168	31.5%	-	-	possibly_damaging(0.559)	tolerated(0.45)	neutral(0.203)	superfamily_Pectin lyase-like
HNRNPK	3190	genome.wustl.edu	37	9	86586623	86586623	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002140.3	-1	reviewed	p.D324	0.998	226	0%	252	50.4%	-	-	-	-	-	NULL
ROR2	4920	genome.wustl.edu	37	9	94519667	94519667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004560.2	-1	reviewed	p.G117D	1.000	161	0%	158	14.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
BICD2	23299	genome.wustl.edu	37	9	95482775	95482775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001003800.1	-1	reviewed	p.A290V	0.284	23	0%	33	30.3%	-	-	benign(0.024)	deleterious(0.05)	neutral(0.346)	HMMPfam_BicD
BICD2	23299	genome.wustl.edu	37	9	95491422	95491422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001003800.1	-1	reviewed	p.Y113H	1.000	32	0%	29	34.5%	-	-	possibly_damaging(0.915)	tolerated(0.4)	neutral(0.383)	HMMPfam_BicD
ENSG00000249385	0	genome.wustl.edu	37	9	99883861	99883861	+	RNA	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000504063	-1	known	NULL	0.972	13	0%	13	53.8%	-	-	-	-	-	-
COL15A1	1306	genome.wustl.edu	37	9	101818586	101818586	+	Silent	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001855.3	+1	reviewed	p.G1079	0.013	40	0%	38	42.1%	-	-	-	-	-	NULL
INVS	27130	genome.wustl.edu	37	9	103054846	103054846	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014425.2	+1	reviewed	p.P769	0.000	63	0%	74	35.1%	-	-	-	-	-	NULL
TEX10	54881	genome.wustl.edu	37	9	103102648	103102648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017746.3	-1	validated	p.S381P	0.746	153	0.7%	191	37.7%	-	-	benign(0.069)	tolerated(0.08)	neutral(0.304)	NULL
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112778274	112778274	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007203.4	+1	validated	p.S179	0.000	39	0%	57	40.4%	-	-	-	-	-	NULL
SVEP1	79987	genome.wustl.edu	37	9	113276339	113276339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153366.3	-1	validated	p.S338G	1.000	19	0%	34	38.2%	-	-	probably_damaging(0.971)	tolerated(0.24)	neutral(0.450)	superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3
KIAA0368	23392	genome.wustl.edu	37	9	114152381	114152381	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080398.1	-1	provisional	p.G1232	0.999	28	0%	52	13.5%	-	-	-	-	-	superfamily_ARM repeat
DNAJC25	548645	genome.wustl.edu	37	9	114411802	114411803	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001015882.2	+1	provisional	p.A188fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RGS3	5998	genome.wustl.edu	37	9	116359227	116359227	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144488.4	+1	reviewed	p.P1197	0.998	7	0.000	20	0.500	-	-	-	-	-	NULL
TRIM32	22954	genome.wustl.edu	37	9	119460539	119460539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099679.1	+1	reviewed	p.V173A	0.997	68	0%	64	40.6%	-	-	benign(0.14)	tolerated(0.39)	neutral(0.028)	NULL
MEGF9	1955	genome.wustl.edu	37	9	123367661	123367661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080497.1	-1	provisional	p.R576P	1.000	125	0%	133	40.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBM18	92400	genome.wustl.edu	37	9	125004184	125004184	+	Silent	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033117.3	-1	validated	p.T184	1.000	87	0%	114	34.2%	-	-	-	-	-	NULL
OLFML2A	169611	genome.wustl.edu	37	9	127572306	127572306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182487.2	+1	validated	p.V525A	1.000	42	0%	34	50%	-	-	possibly_damaging(0.67)	tolerated(0.12)	deleterious(0.498)	HMMPfam_OLF,HMMSmart_SM00284
FAM129B	64855	genome.wustl.edu	37	9	130270705	130270705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022833.2	-1	validated	p.L477P	1.000	32	0%	23	21.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FPGS	2356	genome.wustl.edu	37	9	130566616	130566616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004957.4	+1	reviewed	p.Q64R	1.000	27	0%	25	20%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_MurD-like peptide ligases catalytic domain
SLC25A25	114789	genome.wustl.edu	37	9	130854248	130854248	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001006642.1	+1	validated	p.P33	0.380	38	0%	39	59%	-	-	-	-	-	NULL
LCN2	3934	genome.wustl.edu	37	9	130914298	130914298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005564.3	+1	validated	p.L157I	0.890	105	0%	88	34.1%	-	-	benign(0.332)	deleterious(0)	deleterious(0.548)	HMMPfam_Lipocalin,superfamily_Lipocalins
CIZ1	25792	genome.wustl.edu	37	9	130941458	130941458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001131016.1	-1	validated	p.K343R	0.996	57	0%	44	45.5%	-	-	benign(0.157)	tolerated(0.84)	neutral(0.015)	NULL
C9orf114	51490	genome.wustl.edu	37	9	131588858	131588858	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016390.2	-1	validated	p.V140E	0.992	42	0%	37	48.6%	-	-	possibly_damaging(0.914)	tolerated(0.52)	neutral(0.374)	HMMPfam_DUF171,superfamily_SSF75217
NUP188	23511	genome.wustl.edu	37	9	131721314	131721314	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015354.1	+1	validated	p.V162	0.996	187	0%	181	34.8%	-	-	-	-	-	HMMPfam_Nup188
LAMC3	10319	genome.wustl.edu	37	9	133927971	133927971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006059.3	+1	reviewed	p.L575P	1.000	35	0%	32	25%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_B
NUP214	8021	genome.wustl.edu	37	9	134008542	134008542	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005085.2	+1	reviewed	p.A259	0.041	170	0%	201	34.8%	-	-	-	-	-	superfamily_WD40 repeat-like
PRRC2B	84726	genome.wustl.edu	37	9	134349932	134349932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013318.3	+1	validated	p.S806G	1.000	50	0%	43	25.6%	-	-	benign(0.247)	deleterious(0)	deleterious(0.470)	NULL
SURF6	6838	genome.wustl.edu	37	9	136199054	136199054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006753.4	-1	reviewed	p.R246Q	0.983	29	0%	37	32.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SURF6
SURF4	6836	genome.wustl.edu	37	9	136233513	136233513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033161.2	-1	reviewed	p.Y92H	1.000	14	0%	23	34.8%	-	-	possibly_damaging(0.796)	tolerated(0.34)	neutral(0.322)	HMMPfam_SURF4
COL5A1	1289	genome.wustl.edu	37	9	137716639	137716639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000093.3	+1	reviewed	p.T1631M	0.996	28	0%	28	57.1%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_COLFI,HMMSmart_COLFI
CAMSAP1	157922	genome.wustl.edu	37	9	138710455	138710456	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015447.3	-1	validated	p.A1322fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
QSOX2	169714	genome.wustl.edu	37	9	139100671	139100671	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181701.3	-1	validated	p.L667R	0.987	30	0%	30	63.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DPP7	29952	genome.wustl.edu	37	9	140007889	140007889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013379.2	-1	reviewed	p.A182V	0.997	5	0.000	10	0.700	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Peptidase_S28,superfamily_SSF53474
ANAPC2	29882	genome.wustl.edu	37	9	140082343	140082343	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013366.3	-1	reviewed	p.L110	1.000	18	0%	30	33.3%	-	-	-	-	-	NULL
COBRA1	25920	genome.wustl.edu	37	9	140157534	140157534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015456.3	+1	validated	p.Y215H	1.000	18	0%	16	31.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_COBRA1
DIP2C	22982	genome.wustl.edu	37	10	409225	409225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014974.2	-1	reviewed	p.L835P	1.000	25	0%	29	27.6%	-	-	probably_damaging(0.981)	tolerated(0.26)	neutral(0.460)	superfamily_SSF56801
PFKP	5214	genome.wustl.edu	37	10	3175485	3175485	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000433193	+1	known	p.T20M	0.996	84	0%	82	53.7%	-	-	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE
PITRM1	10531	genome.wustl.edu	37	10	3193389	3193389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000458418	-1	known	p.N391K	0.000	15	0%	12	41.7%	-	-	benign(0.001)	-	-	NULL
AKR1C4	1109	genome.wustl.edu	37	10	5247791	5247791	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001818.2	+1	reviewed	p.T147	0.153	79	0%	107	40.2%	-	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
FAM208B	54906	genome.wustl.edu	37	10	5782232	5782232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017782.4	+1	validated	p.H700R	0.961	105	1%	137	34.3%	-	-	benign(0.05)	deleterious(0.02)	neutral(0.386)	NULL
SEPHS1	22929	genome.wustl.edu	37	10	13380706	13380706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012247.3	-1	reviewed	p.M99T	1.000	106	0%	130	40%	-	-	possibly_damaging(0.594)	deleterious(0.01)	deleterious(0.611)	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
SUV39H2	79723	genome.wustl.edu	37	10	14939270	14939270	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024670.3	+1	provisional	p.C141	1.000	164	0%	179	33%	-	-	-	-	-	HMMPfam_Pre-SET,superfamily_SSF82199
DCLRE1C	64421	genome.wustl.edu	37	10	14950785	14950785	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001033855.1	-1	reviewed	p.S567	0.000	206	0.5%	268	32.8%	-	-	-	-	-	NULL
CUBN	8029	genome.wustl.edu	37	10	16982148	16982148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001081.3	-1	reviewed	p.Y1811H	0.996	241	0%	374	42.5%	-	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KIAA1217	56243	genome.wustl.edu	37	10	24822124	24822124	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_019590.3	+1	validated	p.E1124	0.998	149	0%	139	13.7%	-	-	-	-	-	NULL
MYO3A	53904	genome.wustl.edu	37	10	26482209	26482209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017433.4	+1	reviewed	p.P1505H	1.000	187	0.5%	245	42.9%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
PDSS1	23590	genome.wustl.edu	37	10	27012843	27012843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014317.3	+1	reviewed	p.R240C	1.000	121	0%	104	13.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_polyprenyl_synt,superfamily_Terpenoid synthases
ZEB1	6935	genome.wustl.edu	37	10	31809531	31809531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030751.5	+1	reviewed	p.N423S	0.997	165	0%	216	37.5%	-	-	benign(0.227)	tolerated(0.25)	neutral(0.059)	NULL
ZNF485	220992	genome.wustl.edu	37	10	44112215	44112215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145312.3	+1	validated	p.Y242H	0.950	86	0%	105	35.2%	-	-	possibly_damaging(0.731)	deleterious(0.03)	deleterious(0.631)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM21C	253725	genome.wustl.edu	37	10	46224343	46224343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015262.2	+1	validated	p.T54A	1.000	171	0%	217	36.9%	-	-	possibly_damaging(0.723)	tolerated(0.08)	deleterious(0.562)	NULL
ASAH2C	653365	genome.wustl.edu	37	10	48020456	48020456	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000426610	-1	known	p.T350	0.992	127	0%	282	39.7%	-	-	-	-	-	HMMPfam_Ceramidase_alk
ARHGAP22	58504	genome.wustl.edu	37	10	49662140	49662140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021226.2	-1	validated	p.Y286C	1.000	14	0%	11	54.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
DRGX	644168	genome.wustl.edu	37	10	50574403	50574403	+	Missense_Mutation	SNP	C	C	T	rs143541395	by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080520.1	-1	provisional	p.V189I	1.000	42	0%	53	37.7%	-	-	possibly_damaging(0.882)	tolerated(0.32)	neutral(0.368)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63816977	63816977	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032199.2	+1	validated	p.E316D	1.000	95	0%	126	45.2%	-	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_ARID,superfamily_ARID-like
ARID5B	84159	genome.wustl.edu	37	10	63852568	63852568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032199.2	+1	validated	p.M1116V	1.000	129	0%	145	43.4%	-	-	benign(0.02)	deleterious(0)	neutral(0.446)	NULL
DNA2	1763	genome.wustl.edu	37	10	70191980	70191980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080449.1	-1	provisional	p.V705A	1.000	261	0%	310	33.2%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TET1	80312	genome.wustl.edu	37	10	70426908	70426909	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030625.2	+1	validated	p.D1523fs	1.000:0.403	-	-	-	-	-	-	-	-	-	NULL
SUPV3L1	6832	genome.wustl.edu	37	10	70967668	70967668	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003171.3	+1	provisional	p.H632	0.952	89	0%	119	36.1%	-	-	-	-	-	NULL
COL13A1	1305	genome.wustl.edu	37	10	71631946	71631946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001130103.1	+1	reviewed	p.T127A	0.116	66	1.5%	54	38.9%	-	-	benign(0.005)	-	-	HMMPfam_Collagen
COL13A1	1305	genome.wustl.edu	37	10	71690164	71690164	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000398975	+1	known	p.A47V	0.998	8	0.000	15	0.400	-	-	-	-	-	HMMPfam_Collagen
SPOCK2	9806	genome.wustl.edu	37	10	73822881	73822881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014767.2	-1	validated	p.R344Q	1.000	9	0.000	10	0.700	-	-	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1
NUDT13	25961	genome.wustl.edu	37	10	74883974	74883974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015901.4	+1	validated	p.S121P	1.000	94	0%	112	30.4%	-	-	probably_damaging(0.983)	tolerated(0.16)	deleterious(0.488)	HMMPfam_NUDIX-like
TTC18	118491	genome.wustl.edu	37	10	75016132	75016132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145170.3	-1	validated	p.I1094V	0.001	38	0%	45	42.2%	-	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
KIAA0913	23053	genome.wustl.edu	37	10	75559800	75559800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015037.2	+1	validated	p.Y1566C	1.000	57	0%	58	37.9%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
VCL	7414	genome.wustl.edu	37	10	75867085	75867085	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014000.2	+1	reviewed	p.P844	0.982	96	0%	74	43.2%	-	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
VDAC2	7417	genome.wustl.edu	37	10	76980523	76980525	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003375.3	+1	reviewed	p.S128in_frame_del	1.000:1.000:0.978	-	-	-	-	-	-	-	-	-	HMMPfam_Porin_3
PTEN	5728	genome.wustl.edu	37	10	89692924	89692924	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000371953	+1	known	p.C136*	1.000	172	0%	282	47.2%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000371953	+1	known	p.R233*	0.984	210	0%	257	41.6%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
STAMBPL1	57559	genome.wustl.edu	37	10	90670745	90670745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020799.2	+1	provisional	p.Y133N	1.000	69	0%	121	32.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
BTAF1	9044	genome.wustl.edu	37	10	93768698	93768698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003972.2	+1	validated	p.H1309R	1.000	80	0%	115	33.9%	-	-	probably_damaging(0.961)	tolerated(0.1)	deleterious(0.691)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPEB3	22849	genome.wustl.edu	37	10	93904752	93904752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014912.4	-1	validated	p.R438H	1.000	193	0%	252	40.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
CEP55	55165	genome.wustl.edu	37	10	95275264	95275264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001127182.1	+1	validated	p.T211A	0.954	135	0%	184	26.1%	-	-	benign(0.004)	tolerated(0.75)	neutral(0.002)	NULL
FRA10AC1	118924	genome.wustl.edu	37	10	95445053	95445053	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145246.4	-1	reviewed	p.N192I	1.000	189	0%	313	49.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fra10Ac1
SLC35G1	159371	genome.wustl.edu	37	10	95660822	95660822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001134658.1	+1	validated	p.T225A	0.066	96	1%	110	30%	-	-	benign(0.026)	tolerated(0.46)	neutral(0.013)	NULL
CC2D2B	387707	genome.wustl.edu	37	10	97769594	97769594	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001001732.3	+1	validated	p.K12*	1.000	120	0%	190	37.9%	-	-	-	-	-	NULL
RRP12	23223	genome.wustl.edu	37	10	99126586	99126586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015179.3	-1	validated	p.K1043R	1.000	104	0%	132	33.3%	-	-	benign(0.046)	tolerated(0.36)	neutral(0.022)	NULL
SLC25A28	81894	genome.wustl.edu	37	10	101371088	101371088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_031212.3	-1	validated	p.Y205H	0.999	95	0%	96	39.6%	-	-	possibly_damaging(0.884)	tolerated(0.21)	neutral(0.389)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
KCNIP2	30819	genome.wustl.edu	37	10	103588951	103588951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014591.4	-1	reviewed	p.V92M	0.997	43	0%	51	47.1%	-	-	possibly_damaging(0.461)	deleterious(0.02)	deleterious(0.534)	NULL
GBF1	8729	genome.wustl.edu	37	10	104130185	104130185	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004193.1	+1	provisional	p.E1151D	0.998	193	0%	151	37.1%	-	-	benign(0.004)	tolerated(1)	-	NULL
CNNM2	54805	genome.wustl.edu	37	10	104809546	104809546	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017649.3	+1	validated	p.T568	0.054	81	0%	153	48.4%	-	-	-	-	-	HMMPfam_CBS
TAF5	6877	genome.wustl.edu	37	10	105138180	105138180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006951.3	+1	reviewed	p.I329T	1.000	133	0%	103	45.6%	-	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	HMMPfam_TFIID_90kDa
PDCD11	22984	genome.wustl.edu	37	10	105178304	105178304	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014976.1	+1	validated	p.V673	0.001	82	0%	65	33.8%	-	-	-	-	-	superfamily_Nucleic_acid_OB,HMMSmart_S1
SORCS3	22986	genome.wustl.edu	37	10	106918700	106918700	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014978.1	+1	reviewed	p.S560	0.353	145	0%	198	35.9%	-	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
ADRA2A	150	genome.wustl.edu	37	10	112838203	112838203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000681.3	+1	reviewed	p.I150T	1.000	8	0.000	17	0.294	-	-	possibly_damaging(0.863)	deleterious(0)	deleterious(0.778)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
HABP2	3026	genome.wustl.edu	37	10	115343075	115343075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004132.3	+1	reviewed	p.S399G	0.639	93	0%	93	36.6%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MCMBP	79892	genome.wustl.edu	37	10	121612564	121612564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024834.2	-1	validated	p.A191V	0.873	252	0%	403	43.2%	-	-	benign(0.042)	tolerated(0.1)	neutral(0.289)	HMMPfam_DUF2044
SEC23IP	11196	genome.wustl.edu	37	10	121689254	121689254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007190.2	+1	reviewed	p.F817L	0.998	151	0%	192	34.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DDHD
PLEKHA1	59338	genome.wustl.edu	37	10	124183737	124183737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001001974.1	+1	validated	p.I235K	1.000	35	0%	32	59.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
HTRA1	5654	genome.wustl.edu	37	10	124266907	124266907	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002775.4	+1	reviewed	p.L332	0.016	45	0%	36	22.2%	-	-	-	-	-	HMMPfam_Trypsin,superfamily_Pept_Ser_Cys
CPXM2	119587	genome.wustl.edu	37	10	125528198	125528198	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198148.2	-1	validated	p.N381	1.000	74	0%	66	43.9%	-	-	-	-	-	HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
OAT	4942	genome.wustl.edu	37	10	126089550	126089550	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000274.3	-1	reviewed	p.L340V	0.929	39	0%	35	28.6%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
MKI67	4288	genome.wustl.edu	37	10	129910495	129910495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002417.4	-1	reviewed	p.L624P	0.001	110	0%	104	44.2%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
TCERG1L	256536	genome.wustl.edu	37	10	132944845	132944845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_174937.3	-1	validated	p.M371I	0.901	84	0%	69	36.2%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMSmart_WW,superfamily_WW_Rsp5_WWP
MRPL23	6150	genome.wustl.edu	37	11	1973408	1973408	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000429295	+1	known	p.R59C	0.253	11	0%	24	58.3%	-	-	-	-	-	superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23
CARS	833	genome.wustl.edu	37	11	3039851	3039851	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001014437.1	-1	reviewed	p.S508	1.000	87	0%	77	49.4%	-	-	-	-	-	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
ZNF195	7748	genome.wustl.edu	37	11	3381419	3381419	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001130520.1	-1	validated	p.K273	0.025	331	0%	455	33.6%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NUP98	4928	genome.wustl.edu	37	11	3722065	3722065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016320.4	-1	reviewed	p.T1173A	0.997	97	0%	134	29.9%	-	-	benign(0.179)	tolerated(0.18)	neutral(0.073)	NULL
OR51E1	143503	genome.wustl.edu	37	11	4673933	4673933	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152430.3	+1	validated	p.H59	0.992	448	0%	526	34.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51G2	81282	genome.wustl.edu	37	11	4935968	4935968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005238.1	-1	provisional	p.T309M	0.002	48	0%	55	12.7%	-	-	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	superfamily_SSF81321
UBQLN3	50613	genome.wustl.edu	37	11	5530048	5530048	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017481.2	-1	reviewed	p.I247	1.000	67	0%	81	43.2%	-	-	-	-	-	NULL
TRIM5	85363	genome.wustl.edu	37	11	5701023	5701023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033034.2	-1	reviewed	p.F129L	0.000	131	0%	136	45.6%	-	-	benign(0.029)	tolerated(0.14)	neutral(0.251)	HMMPfam_zf-B_box,HMMSmart_SM00336
SMPD1	6609	genome.wustl.edu	37	11	6413367	6413367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000543.3	+1	reviewed	p.E358K	0.029	84	0%	62	41.9%	-	-	benign(0.004)	tolerated(0.22)	neutral(0.042)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
DNHD1	144132	genome.wustl.edu	37	11	6592966	6592966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144666.2	+1	provisional	p.Q4671R	1.000	73	1.4%	64	56.2%	-	-	possibly_damaging(0.662)	tolerated(0.51)	neutral(0.243)	HMMPfam_Dynein_heavy
CTR9	9646	genome.wustl.edu	37	11	10789383	10789383	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014633.3	+1	provisional	p.N573H	1.000	217	0%	391	46.3%	-	-	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	superfamily_SSF48452
COPB1	1315	genome.wustl.edu	37	11	14512117	14512117	+	Silent	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001144061.1	-1	reviewed	p.A200	0.998	49	0%	53	47.2%	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
USH1C	10083	genome.wustl.edu	37	11	17519711	17519711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153676.3	-1	reviewed	p.G830R	1.000	69	0%	78	44.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SPTY2D1	144108	genome.wustl.edu	37	11	18637275	18637275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_194285.2	-1	validated	p.E182D	0.981	204	0%	216	39.8%	-	-	benign(0.39)	deleterious(0)	deleterious(0.570)	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33050322	33050322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001077242.1	+1	validated	p.A256T	1.000	84	0%	81	32.1%	-	-	possibly_damaging(0.765)	deleterious(0.03)	deleterious(0.648)	NULL
HIPK3	10114	genome.wustl.edu	37	11	33375017	33375017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005734.3	+1	validated	p.K1184R	1.000	212	0%	287	53.3%	-	-	probably_damaging(0.989)	tolerated(0.52)	neutral(0.448)	NULL
TTC17	55761	genome.wustl.edu	37	11	43471655	43471655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018259.5	+1	validated	p.A937V	1.000	138	0.7%	193	40.4%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF48452
PHF21A	51317	genome.wustl.edu	37	11	45959706	45959706	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001101802.1	-1	validated	e13+2	1.000	49	0%	60	28.3%	-	-	-	-	-	-
DGKZ	8525	genome.wustl.edu	37	11	46388933	46388933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001105540.1	+1	reviewed	p.S274N	1.000	3	0.000	7	0.857	-	-	benign(0.025)	tolerated(0.24)	neutral(0.038)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46569395	46569395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017749.2	-1	validated	p.T56A	1.000	66	0%	62	45.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_WD40
MYBPC3	4607	genome.wustl.edu	37	11	47353701	47353701	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000256.3	-1	reviewed	p.F1246V	1.000	42	0%	35	37.1%	-	-	possibly_damaging(0.62)	deleterious(0.04)	deleterious(0.565)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TRIM48	79097	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024114.3	+1	validated	p.Y192H	0.183	51	0%	103	25.2%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
TNKS1BP1	85456	genome.wustl.edu	37	11	57069378	57069378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033396.2	-1	validated	p.V1625A	0.885	198	0%	196	39.3%	-	-	benign(0.13)	tolerated(0.05)	neutral(0.356)	NULL
OR6Q1	219952	genome.wustl.edu	37	11	57799376	57799376	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005186.2	+1	validated	p.*318R	0.002	141	0%	138	42.8%	-	-	-	-	-	NULL
MS4A15	219995	genome.wustl.edu	37	11	60538770	60538770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098835.1	+1	validated	p.I119V	1.000	29	0%	24	37.5%	-	-	benign(0.205)	tolerated(0.11)	neutral(0.292)	HMMPfam_CD20
TUT1	64852	genome.wustl.edu	37	11	62343616	62343616	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000463241	-1	known	p.P565S	1.000	17	0%	12	66.7%	-	-	-	-	-	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain
SLC22A11	55867	genome.wustl.edu	37	11	64329573	64329573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018484.2	+1	reviewed	p.L199M	0.992	19	0%	15	46.7%	-	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PYGM	5837	genome.wustl.edu	37	11	64518837	64518837	+	Silent	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005609.2	-1	reviewed	p.V643	0.981	26	0%	32	34.4%	-	-	-	-	-	HMMPfam_Phosphorylase,superfamily_SSF53756
FIBP	9158	genome.wustl.edu	37	11	65653893	65653893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198897.1	-1	reviewed	p.F138L	1.000	37	0%	53	32.1%	-	-	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMPfam_FIBP
CCDC87	55231	genome.wustl.edu	37	11	66359219	66359219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018219.2	-1	validated	p.P423Q	0.007	32	0%	51	35.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RBM4	5936	genome.wustl.edu	37	11	66411237	66411237	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002896.2	+1	validated	p.N243	1.000	83	0%	59	40.7%	-	-	-	-	-	NULL
SYT12	91683	genome.wustl.edu	37	11	66811216	66811216	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_177963.3	+1	reviewed	p.D243	0.023	54	0%	50	34%	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KDM2A	22992	genome.wustl.edu	37	11	66888815	66888815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012308.2	+1	reviewed	p.Y10H	1.000	43	0%	86	43%	-	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	NULL
MTL5	9633	genome.wustl.edu	37	11	68512544	68512544	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004923.3	-1	reviewed	p.L222	0.999	35	0%	47	44.7%	-	-	-	-	-	NULL
CCND1	595	genome.wustl.edu	37	11	69465889	69465889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_053056.2	+1	reviewed	p.C243R	1.000	4	0.000	4	1.000	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
SHANK2	22941	genome.wustl.edu	37	11	70348915	70348915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012309.3	-1	reviewed	p.T140N	0.998	17	0%	11	63.6%	-	-	probably_damaging(0.974)	tolerated(0.14)	deleterious(0.665)	NULL
RNF121	55298	genome.wustl.edu	37	11	71707391	71707391	+	RNA	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NR_024147.1	+1	reviewed	NULL	0.210	29	0%	21	47.6%	-	-	-	-	-	-
PPME1	51400	genome.wustl.edu	37	11	73936303	73936303	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016147.1	+1	provisional	e5+2	1.000	9	0.000	20	0.350	-	-	-	-	-	-
INTS4	92105	genome.wustl.edu	37	11	77605371	77605371	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033547.3	-1	validated	p.C751	1.000	25	0%	31	32.3%	-	-	-	-	-	NULL
GAB2	9846	genome.wustl.edu	37	11	77961371	77961371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_080491.2	-1	reviewed	p.H151R	1.000	206	0%	228	32%	-	-	benign(0.001)	tolerated(0.83)	neutral(0.001)	NULL
C11orf82	220042	genome.wustl.edu	37	11	82644892	82644892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145018.3	+1	validated	p.I838V	0.000	123	0%	153	31.4%	-	-	benign(0)	tolerated(1)	-	NULL
FAT3	120114	genome.wustl.edu	37	11	92088323	92088323	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008781.2	+1	validated	p.K1015N	1.000	82	0%	85	43.5%	-	-	benign(0.104)	tolerated(0.16)	neutral(0.068)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92525978	92525978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008781.2	+1	validated	p.I1553V	1.000	115	0%	153	39.2%	-	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92570870	92570870	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008781.2	+1	validated	p.G3422	0.298	68	0%	70	50%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
HEPHL1	341208	genome.wustl.edu	37	11	93844211	93844211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098672.1	+1	validated	p.Y1063C	1.000	21	0%	26	61.5%	-	-	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2
AMOTL1	154810	genome.wustl.edu	37	11	94533021	94533021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_130847.2	+1	reviewed	p.G222V	0.989	118	0%	97	53.6%	-	-	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108383032	108383032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015065.2	-1	validated	p.N1068D	0.000	141	0%	160	37.5%	-	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
ALG9	79796	genome.wustl.edu	37	11	111739350	111739350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024740.2	-1	reviewed	p.H127R	1.000	114	0%	86	30.2%	-	-	possibly_damaging(0.919)	tolerated(0.35)	neutral(0.390)	HMMPfam_Glyco_transf_22
BCL9L	283149	genome.wustl.edu	37	11	118772137	118772137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182557.2	-1	validated	p.M772T	1.000	60	0%	47	46.8%	-	-	possibly_damaging(0.794)	deleterious(0.02)	deleterious(0.681)	NULL
USP2	9099	genome.wustl.edu	37	11	119228903	119228903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004205.4	-1	validated	p.T433A	1.000	52	0%	41	39%	-	-	possibly_damaging(0.598)	deleterious(0.04)	deleterious(0.556)	HMMPfam_UCH,superfamily_Cysteine proteinases
TECTA	7007	genome.wustl.edu	37	11	120998618	120998618	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005422.2	+1	reviewed	p.C644	1.000	50	0%	44	40.9%	-	-	-	-	-	superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_TIL
ZNF202	7753	genome.wustl.edu	37	11	123597046	123597046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003455.2	-1	validated	p.P536S	1.000	150	0%	164	11.6%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_C2H2 and C2HC zinc fingers
OR8D1	283159	genome.wustl.edu	37	11	124180164	124180164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001002917.1	-1	provisional	p.S167P	0.000	115	0%	130	36.9%	-	-	possibly_damaging(0.839)	tolerated(0.14)	deleterious(0.570)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ETS1	2113	genome.wustl.edu	37	11	128355972	128355972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001143820.1	-1	validated	p.Y202C	1.000	191	0%	243	32.1%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	NULL
NFRKB	4798	genome.wustl.edu	37	11	129744220	129744220	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006165.3	-1	validated	p.S714	0.446	149	0%	151	39.7%	-	-	-	-	-	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133801986	133801986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014987.1	-1	validated	p.R364C	0.861	18	0%	16	68.8%	-	-	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	HMMSmart_IG,superfamily_SSF48726
KDM5A	5927	genome.wustl.edu	37	12	443422	443422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001042603.1	-1	reviewed	p.I492S	1.000	252	0%	338	33.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00558,HMMPfam_JmjC
WNK1	65125	genome.wustl.edu	37	12	988777	988777	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018979.3	+1	reviewed	p.E804	1.000	106	0%	101	27.7%	-	-	-	-	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1289737	1289737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178040.2	+1	reviewed	p.K590R	1.000	97	0%	134	38.8%	-	-	possibly_damaging(0.842)	tolerated(0.29)	neutral(0.351)	superfamily_Prefoldin,HMMPfam_Cast
KCNA5	3741	genome.wustl.edu	37	12	5154614	5154614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002234.2	+1	reviewed	p.L434P	1.000	70	1.4%	39	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
VWF	7450	genome.wustl.edu	37	12	6134844	6134844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000552.3	-1	reviewed	p.S1042P	0.032	41	0%	49	36.7%	-	-	benign(0.01)	deleterious(0.03)	neutral(0.365)	NULL
SCNN1A	6337	genome.wustl.edu	37	12	6483859	6483859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001038.5	-1	reviewed	p.L31M	0.112	28	0%	25	56%	-	-	possibly_damaging(0.924)	tolerated(0.21)	neutral(0.417)	NULL
NCAPD2	9918	genome.wustl.edu	37	12	6626837	6626837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014865.3	+1	validated	p.T466A	0.000	165	0%	163	33.1%	-	-	benign(0)	tolerated(0.72)	neutral(0.002)	superfamily_ARM repeat
NCAPD2	9918	genome.wustl.edu	37	12	6631046	6631046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014865.3	+1	validated	p.K599N	0.000	126	0%	121	41.3%	-	-	benign(0.002)	tolerated(0.48)	neutral(0.011)	superfamily_ARM repeat
CLEC4C	170482	genome.wustl.edu	37	12	7882333	7882333	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_130441.2	-1	reviewed	p.F167	0.968	157	0%	146	49.3%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
A2ML1	144568	genome.wustl.edu	37	12	9020884	9020884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144670.3	+1	validated	p.V1331E	1.000	205	0%	225	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Alpha-macroglobulin receptor domain
TAS2R13	50838	genome.wustl.edu	37	12	11061547	11061547	+	Silent	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_023920.2	-1	reviewed	p.P117	0.000	99	0%	158	34.2%	-	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R50	259296	genome.wustl.edu	37	12	11138711	11138711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_176890.2	-1	validated	p.W250L	0.134	185	0%	266	42.5%	-	-	benign(0.055)	deleterious(0)	neutral(0.448)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
CREBL2	1389	genome.wustl.edu	37	12	12790643	12790643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001310.2	+1	reviewed	p.N118S	0.913	105	0%	122	29.5%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
GPRC5A	9052	genome.wustl.edu	37	12	13065468	13065468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003979.3	+1	reviewed	p.S357G	0.022	330	0%	373	36.5%	-	-	possibly_damaging(0.567)	deleterious(0)	deleterious(0.639)	NULL
WBP11	51729	genome.wustl.edu	37	12	14952594	14952594	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016312.2	-1	reviewed	p.R55	1.000	38	0%	41	36.6%	-	-	-	-	-	HMMPfam_Wbp11
PTPRO	5800	genome.wustl.edu	37	12	15718556	15718556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030667.1	+1	reviewed	p.L914R	1.000	118	0%	206	30.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_(Phosphotyrosine protein) phosphatases II
PYROXD1	79912	genome.wustl.edu	37	12	21614991	21614991	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024854.3	+1	validated	p.C310	0.989	93	0%	123	45.5%	-	-	-	-	-	HMMPfam_Pyr_redox_2,superfamily_SSF51905
ALG10	84920	genome.wustl.edu	37	12	34179762	34179762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032834.3	+1	reviewed	p.A445V	0.857	185	0%	261	46.4%	-	-	benign(0)	tolerated(1)	-	NULL
CPNE8	144402	genome.wustl.edu	37	12	39170084	39170084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153634.2	-1	reviewed	p.C143R	1.000	76	0%	140	33.6%	-	-	benign(0.212)	tolerated(0.31)	neutral(0.048)	superfamily_C2_CaLB
MLL2	8085	genome.wustl.edu	37	12	49448123	49448123	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003482.3	-1	validated	p.G159	1.000	42	0%	50	24%	-	-	-	-	-	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50386094	50386094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001126103.1	-1	validated	p.I504M	0.993	149	0%	190	37.4%	-	-	possibly_damaging(0.796)	deleterious(0.03)	deleterious(0.663)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
DIP2B	57609	genome.wustl.edu	37	12	51112790	51112790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173602.2	+1	validated	p.H1005R	0.999	59	0%	55	23.6%	-	-	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	superfamily_Acetyl-CoA synthetase-like
SLC11A2	4891	genome.wustl.edu	37	12	51402294	51402294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000617.2	-1	reviewed	p.Y50N	1.000	186	0%	245	43.3%	-	-	benign(0.406)	deleterious(0.01)	deleterious(0.536)	NULL
ACVR1B	91	genome.wustl.edu	37	12	52369209	52369209	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004302.3	+1	reviewed	p.C84	1.000	73	0%	73	42.5%	-	-	-	-	-	HMMPfam_Activin_recp,superfamily_Snake toxin-like
NR4A1	3164	genome.wustl.edu	37	12	52451230	52451230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002135.3	+1	reviewed	p.I486V	1.000	40	0%	30	36.7%	-	-	benign(0.012)	deleterious(0.03)	neutral(0.365)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TENC1	23371	genome.wustl.edu	37	12	53453883	53453883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015319.2	+1	reviewed	p.S830R	1.000	16	0%	12	58.3%	-	-	benign(0.096)	deleterious(0)	neutral(0.452)	NULL
MAP3K12	7786	genome.wustl.edu	37	12	53880838	53880838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006301.2	-1	reviewed	p.Q80R	1.000	107	0%	60	35%	-	-	possibly_damaging(0.872)	tolerated(0.18)	neutral(0.395)	NULL
HOXC5	3222	genome.wustl.edu	37	12	54428226	54428226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018953.2	+1	reviewed	p.R207G	1.000	47	0%	47	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
OR6C65	403282	genome.wustl.edu	37	12	55794442	55794442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005518.1	+1	provisional	p.I44V	0.898	54	0%	69	30.4%	-	-	possibly_damaging(0.913)	tolerated(0.14)	deleterious(0.614)	HMMPfam_7tm_1,superfamily_SSF81321
DGKA	1606	genome.wustl.edu	37	12	56346620	56346620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001345.4	+1	reviewed	p.R616G	1.000	421	0%	349	36.7%	-	-	benign(0.106)	tolerated(0.35)	neutral(0.029)	HMMPfam_DAGK_acc,HMMSmart_SM00045
DGKA	1606	genome.wustl.edu	37	12	56346661	56346661	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001345.4	+1	reviewed	p.L629	0.002	427	0%	370	33%	-	-	-	-	-	HMMPfam_DAGK_acc,HMMSmart_SM00045
MYL6B	140465	genome.wustl.edu	37	12	56547758	56547758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002475.3	+1	reviewed	p.K19I	0.897	20	0%	18	33.3%	-	-	unknown(0)	deleterious(0.01)	-	NULL
SMARCC2	6601	genome.wustl.edu	37	12	56581036	56581036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003075.3	-1	reviewed	p.L56V	1.000	102	0%	165	44.8%	-	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
BAZ2A	11176	genome.wustl.edu	37	12	56996500	56996500	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013449.3	-1	validated	p.L1143	0.005	63	0%	54	40.7%	-	-	-	-	-	NULL
HSD17B6	8630	genome.wustl.edu	37	12	57167808	57167808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003725.2	+1	reviewed	p.A58T	1.000	124	0%	134	10.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-bd
ZBTB39	9880	genome.wustl.edu	37	12	57398602	57398602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014830.1	-1	provisional	p.I34V	1.000	95	0%	170	36.5%	-	-	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
LRP1	4035	genome.wustl.edu	37	12	57594545	57594545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002332.2	+1	reviewed	p.F3391S	1.000	20	0%	21	57.1%	-	-	benign(0.212)	tolerated(0.25)	neutral(0.057)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module
MBD6	114785	genome.wustl.edu	37	12	57920493	57920493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052897.3	+1	validated	p.S522N	0.997	15	0%	44	40.9%	-	-	unknown(0)	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57960915	57960915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004984.2	+1	reviewed	p.T170A	1.000	117	0%	118	26.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
XPOT	11260	genome.wustl.edu	37	12	64825368	64825368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007235.3	+1	reviewed	p.C676Y	1.000	137	0%	211	36.5%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_ARM-type_fold
HELB	92797	genome.wustl.edu	37	12	66717976	66717976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033647.2	+1	reviewed	p.I837M	1.000	132	0%	137	38%	-	-	benign(0.044)	tolerated(0.09)	neutral(0.299)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GRIP1	23426	genome.wustl.edu	37	12	66786573	66786573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021150.3	-1	reviewed	p.D666G	1.000	198	0%	238	33.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ZFC3H1	196441	genome.wustl.edu	37	12	72057183	72057183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144982.4	-1	validated	p.G70S	1.000	49	0%	44	40.9%	-	-	unknown(0)	deleterious(0)	-	NULL
KCNC2	3747	genome.wustl.edu	37	12	75444965	75444965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_139137.2	-1	reviewed	p.Y274H	1.000	143	0%	239	35.1%	-	-	benign(0.003)	tolerated(0.5)	neutral(0.010)	superfamily_Voltage-gated potassium channels
GLIPR1L1	256710	genome.wustl.edu	37	12	75728562	75728562	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152779.2	+1	provisional	p.V18	0.000	55	0%	95	12.6%	-	-	-	-	-	PatternScan_OPSIN,superfamily_SCP-like_extracellular
LOC100127919	100127919	genome.wustl.edu	37	12	93429389	93429389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_001719900.1	+1	model	p.N117H	0.007	111	0%	138	46.4%	-	-	-	-	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97114258	97114258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198520.2	+1	validated	p.C719R	0.086	30	0%	44	38.6%	-	-	unknown(0)	deleterious(0.04)	-	NULL
APAF1	317	genome.wustl.edu	37	12	99080653	99080653	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181861.1	+1	reviewed	e15+2	1.000	162	0%	200	34.5%	-	-	-	-	-	-
PARPBP	55010	genome.wustl.edu	37	12	102589916	102589916	+	Silent	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017915.2	+1	predicted	p.P448	0.009	128	0%	215	37.7%	-	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104149440	104149440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017564.9	+1	reviewed	p.S2311G	0.977	85	1.2%	102	32.4%	-	-	benign(0.054)	deleterious(0.03)	neutral(0.368)	superfamily_BIgH3_FAS1
HCFC2	29915	genome.wustl.edu	37	12	104460053	104460053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013320.2	+1	reviewed	p.V91A	1.000	149	0%	162	43.2%	-	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
ALDH1L2	160428	genome.wustl.edu	37	12	105462659	105462659	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001034173.3	-1	reviewed	p.T144	0.995	116	0%	150	39.3%	-	-	-	-	-	HMMPfam_Formyl_trans_N,superfamily_Formyltransferase
CRY1	1407	genome.wustl.edu	37	12	107398920	107398920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004075.3	-1	validated	p.I125T	1.000	84	0%	129	36.4%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_DNA_photolyase,superfamily_Cryptochrome/photolyase N-terminal domain
ACACB	32	genome.wustl.edu	37	12	109623531	109623531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001093.3	+1	reviewed	p.E656K	1.000	69	0%	87	37.9%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Biotin_carb_C,superfamily_Rudiment single hybrid motif
ACACB	32	genome.wustl.edu	37	12	109684008	109684008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001093.3	+1	reviewed	p.R1776G	0.024	100	0%	116	45.7%	-	-	benign(0.012)	tolerated(0.09)	neutral(0.297)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
C12orf51	283450	genome.wustl.edu	37	12	112610511	112610511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001109662.2	-1	validated	p.A3495T	0.321	25	0%	19	42.1%	-	-	benign(0.033)	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112668575	112668575	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001109662.2	-1	validated	p.A1662	0.568	28	0%	25	24%	-	-	-	-	-	NULL
VSIG10	54621	genome.wustl.edu	37	12	118506327	118506328	+	In_Frame_Ins	INS	-	-	TCC	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_019086.5	-1	validated	p.475in_frame_insE	0.003:0.008	-	-	-	-	-	-	-	-	-	NULL
HSPB8	26353	genome.wustl.edu	37	12	119631534	119631534	+	Silent	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014365.2	+1	reviewed	p.V154	0.006	151	0%	118	31.4%	-	-	-	-	-	HMMPfam_HSP20,superfamily_HSP20-like chaperones
ORAI1	84876	genome.wustl.edu	37	12	122064774	122064779	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	rs141919534	byCluster;by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	CCGCCA	CCGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032790.3	+1	reviewed	p.PP46in_frame_del	0.716:0.710:0.709:0.897:0.997:0.999	-	-	-	-	-	-	-	-	-	NULL
MLXIP	22877	genome.wustl.edu	37	12	122625595	122625595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000319080	+1	known	p.L868P	1.000	19	0%	20	25%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123062326	123062326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014708.4	+1	reviewed	p.D943E	0.023	92	0%	129	51.2%	-	-	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123647628	123647628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022782.2	-1	validated	p.S836P	1.000	73	0%	81	33.3%	-	-	possibly_damaging(0.913)	tolerated(0.05)	deleterious(0.710)	NULL
C12orf65	91574	genome.wustl.edu	37	12	123741574	123741574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001143905.1	+1	validated	p.H166R	0.000	105	1%	116	31%	-	-	unknown(0)	deleterious(0)	-	NULL
CDK2AP1	8099	genome.wustl.edu	37	12	123751745	123751745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004642.2	-1	reviewed	p.L47P	0.983	20	0%	25	24%	-	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_CDK2AP
SBNO1	55206	genome.wustl.edu	37	12	123804544	123804544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018183.3	-1	validated	p.D900G	1.000	98	0%	111	46.8%	-	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124382336	124382336	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_207437.3	+1	validated	p.P2982	0.000	151	0%	165	10.9%	-	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124401041	124401041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_207437.3	+1	validated	p.L3469P	1.000	47	0%	62	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBC	7316	genome.wustl.edu	37	12	125397699	125397699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021009.4	-1	validated	p.T207A	1.000	315	0%	299	41.5%	-	-	benign(0.366)	deleterious(0)	deleterious(0.561)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
UBC	7316	genome.wustl.edu	37	12	125397899	125397902	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021009.4	-1	validated	p.K139fs	1.000:1.000:0.583:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
RIMBP2	23504	genome.wustl.edu	37	12	130935764	130935764	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015347.4	-1	validated	p.S143	1.000	46	0%	44	43.2%	-	-	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132472311	132472311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015409.3	+1	validated	p.R761H	0.999	15	0%	22	63.6%	-	-	unknown(0)	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133214612	133214612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006231.2	-1	validated	p.Y1889C	1.000	53	0%	45	40%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1744
PSPC1	55269	genome.wustl.edu	37	13	20346594	20346594	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001042414.1	-1	validated	p.H154	1.000	78	1.3%	126	42.9%	-	-	-	-	-	superfamily_RNA-binding domain RBD
FLT3	2322	genome.wustl.edu	37	13	28609677	28609677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004119.2	-1	reviewed	p.N518D	0.228	189	0%	202	50.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FRY	10129	genome.wustl.edu	37	13	32745401	32745401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_023037.2	+1	validated	p.N715K	0.000	50	0%	90	37.8%	-	-	benign(0.005)	tolerated(0.58)	neutral(0.005)	NULL
SPG20	23111	genome.wustl.edu	37	13	36903584	36903584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142294.1	-1	reviewed	p.Q360R	0.374	277	0%	469	36.9%	-	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	NULL
PROSER1	80209	genome.wustl.edu	37	13	39587642	39587642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_025138.3	-1	validated	p.R583C	0.003	212	0%	260	36.5%	-	-	benign(0.054)	tolerated(0.19)	neutral(0.053)	NULL
COG6	57511	genome.wustl.edu	37	13	40293483	40293483	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000422759	+1	known	p.L487P	0.986	103	0%	149	35.6%	-	-	-	-	-	HMMPfam_COG6
TSC22D1	8848	genome.wustl.edu	37	13	45148708	45148708	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_183422.2	-1	validated	p.Q501	0.000	59	0%	63	15.9%	-	-	-	-	-	NULL
KCTD4	386618	genome.wustl.edu	37	13	45767958	45767958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198404.2	-1	validated	p.I249L	1.000	99	0%	123	36.6%	-	-	benign(0.03)	deleterious(0.01)	neutral(0.407)	NULL
LRCH1	23143	genome.wustl.edu	37	13	47224449	47224449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015116.2	+1	reviewed	p.N141D	1.000	41	0%	56	57.1%	-	-	possibly_damaging(0.845)	deleterious(0.03)	deleterious(0.689)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
RB1	5925	genome.wustl.edu	37	13	48916840	48916841	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000321.2	+1	reviewed	p.I124fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	49039185	49039185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000321.2	+1	reviewed	p.F755I	1.000	88	0%	134	46.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like
CDADC1	81602	genome.wustl.edu	37	13	49829998	49829998	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000429346	+1	known	p.D64G	0.747	55	0%	92	28.3%	-	-	-	-	-	NULL
THSD1	55901	genome.wustl.edu	37	13	52952406	52952406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018676.3	-1	reviewed	p.A567T	0.119	161	0%	182	46.7%	-	-	benign(0.001)	tolerated(0.84)	neutral(0.001)	NULL
OLFM4	10562	genome.wustl.edu	37	13	53624654	53624654	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006418.3	+1	reviewed	p.K427	0.557	190	0%	228	10.5%	-	-	-	-	-	HMMPfam_OLF,HMMSmart_OLF
TDRD3	81550	genome.wustl.edu	37	13	61102733	61102733	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030794.2	+1	validated	p.S365	0.995	95	0%	156	35.9%	-	-	-	-	-	NULL
BORA	79866	genome.wustl.edu	37	13	73319140	73319140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024808.2	+1	validated	p.E178G	1.000	151	0%	237	33.8%	-	-	probably_damaging(0.956)	tolerated(0.06)	deleterious(0.722)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77764431	77764431	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015057.4	-1	validated	p.N1332	0.997	47	0%	58	10.3%	-	-	-	-	-	HMMPfam_PHR
DCT	1638	genome.wustl.edu	37	13	95114271	95114271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001129889.1	-1	validated	p.S346G	1.000	67	0%	63	11.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tyrosinase,superfamily_Di-copper_centre
SLC15A1	6564	genome.wustl.edu	37	13	99338468	99338468	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005073.3	-1	reviewed	p.A637	0.111	28	0%	39	30.8%	-	-	-	-	-	superfamily_MFS general substrate transporter
RASA3	22821	genome.wustl.edu	37	13	114792890	114792890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007368.2	-1	reviewed	p.Q193R	1.000	23	0%	13	46.2%	-	-	benign(0.052)	tolerated(0.4)	neutral(0.019)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UPF3A	65110	genome.wustl.edu	37	13	115067486	115067486	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_023011.2	+1	reviewed	p.R430*	0.460	25	0%	23	47.8%	-	-	-	-	-	NULL
RNASE10	338879	genome.wustl.edu	37	14	20978883	20978883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001012975.1	+1	provisional	p.I85V	0.000	102	0%	91	39.6%	-	-	benign(0.003)	tolerated(0.53)	neutral(0.007)	NULL
LOC100288791	100288791	genome.wustl.edu	37	14	23311228	23311228	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_002343265.1	-1	model	p.L239*	0.975	89	0%	83	32.5%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
PSMB11	122706	genome.wustl.edu	37	14	23512120	23512120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099780.1	+1	validated	p.R229Q	0.994	23	0%	24	37.5%	-	-	probably_damaging(0.962)	tolerated(0.25)	neutral(0.442)	superfamily_SSF56235
TINF2	26277	genome.wustl.edu	37	14	24710454	24710454	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099274.1	-1	reviewed	p.L155	0.443	325	0%	344	39.8%	-	-	-	-	-	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35243689	35243689	+	Silent	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013448.2	-1	validated	p.P947	1.000	80	0%	120	40.8%	-	-	-	-	-	NULL
PNN	5411	genome.wustl.edu	37	14	39646669	39646669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002687.3	+1	validated	p.E103G	1.000	72	0%	83	25.3%	-	-	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	HMMPfam_Pinin_SDK_N
C14orf28	122525	genome.wustl.edu	37	14	45369876	45369877	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001017923.1	+1	validated	p.L82fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DNAAF2	55172	genome.wustl.edu	37	14	50092545	50092545	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018139.2	-1	reviewed	p.S743	0.701	61	0%	78	42.3%	-	-	-	-	-	NULL
NIN	51199	genome.wustl.edu	37	14	51226993	51226993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020921.3	-1	reviewed	p.E661Q	0.113	80	0%	76	40.8%	-	-	benign(0.049)	tolerated(0.05)	neutral(0.348)	NULL
NID2	22795	genome.wustl.edu	37	14	52481961	52481961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007361.3	-1	validated	p.R1021C	1.000	56	0%	56	12.5%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
SOCS4	122809	genome.wustl.edu	37	14	55510863	55510863	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_080867.2	+1	reviewed	p.S368	0.992	115	0%	117	48.7%	-	-	-	-	-	HMMSmart_SM00252,superfamily_SH2 domain
SLC35F4	341880	genome.wustl.edu	37	14	58030940	58030943	+	Frame_Shift_Del	DEL	CTCA	CTCA	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	CTCA	CTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080455.1	-1	provisional	p.S492fs	1.000:1.000:1.000:0.991	-	-	-	-	-	-	-	-	-	NULL
RHOJ	57381	genome.wustl.edu	37	14	63757668	63757668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020663.3	+1	provisional	p.I191L	0.999	87	0%	128	43%	-	-	possibly_damaging(0.675)	deleterious(0)	deleterious(0.684)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYNE2	23224	genome.wustl.edu	37	14	64589028	64589028	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182914.2	+1	reviewed	p.N4435	0.002	146	0%	193	44%	-	-	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64619362	64619362	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182914.2	+1	reviewed	p.A5240	0.000	91	0%	106	33%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
RGS6	9628	genome.wustl.edu	37	14	72985221	72985221	+	Silent	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004296.4	+1	validated	p.G418	1.000	74	0%	68	39.7%	-	-	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
C14orf45	80127	genome.wustl.edu	37	14	74531394	74531394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_025057.2	+1	validated	p.T528A	0.097	110	0%	147	29.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
MLH3	27030	genome.wustl.edu	37	14	75506617	75506618	+	Frame_Shift_Ins	INS	-	-	ATTGAATG	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001040108.1	-1	reviewed	p.M1189fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75506669	75506669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001040108.1	-1	reviewed	p.I1172N	1.000	40	0%	38	36.8%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
SEL1L	6400	genome.wustl.edu	37	14	81953766	81953766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005065.4	-1	validated	p.G534S	0.999	52	0%	76	42.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
GPR65	8477	genome.wustl.edu	37	14	88478157	88478157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003608.3	+1	validated	p.I322M	0.011	78	0%	104	32.7%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
KCNK10	54207	genome.wustl.edu	37	14	88652421	88652421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138317.2	-1	reviewed	p.S364G	1.000	42	0%	23	52.2%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	superfamily_Voltage-gated potassium channels
EML5	161436	genome.wustl.edu	37	14	89083107	89083107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_183387.2	-1	validated	p.M1920T	1.000	87	0%	94	30.9%	-	-	benign(0.121)	deleterious(0.02)	neutral(0.393)	HMMSmart_SM00320,superfamily_WD40 repeat-like
RAB42P1	646996	genome.wustl.edu	37	14	90358634	90358634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000389290	+1	known	p.L159P	0.981	11	0%	26	30.8%	-	-	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIP11	9321	genome.wustl.edu	37	14	92470420	92470420	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004239.3	-1	reviewed	p.N1300	0.022	84	0%	99	28.3%	-	-	-	-	-	NULL
ITPK1	3705	genome.wustl.edu	37	14	93542959	93542959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142593.1	-1	validated	p.R34Q	1.000	48	0%	53	54.7%	-	-	benign(0.137)	tolerated(0.59)	neutral(0.016)	HMMPfam_Ins134_P3_kin
UNC79	57578	genome.wustl.edu	37	14	94046553	94046553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020818.3	+1	validated	p.I654T	1.000	109	0%	147	34.7%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
IFI27L2	83982	genome.wustl.edu	37	14	94594300	94594300	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032036.2	-1	validated	p.I77F	0.045	70	0%	61	44.3%	-	-	benign(0.042)	tolerated(0.15)	neutral(0.243)	HMMPfam_Ifi-6-16
SERPINA4	5267	genome.wustl.edu	37	14	95034557	95034557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006215.2	+1	provisional	p.T339A	0.000	90	0%	99	36.4%	-	-	benign(0.037)	deleterious(0.01)	neutral(0.408)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
DICER1	23405	genome.wustl.edu	37	14	95579533	95579533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030621.3	-1	reviewed	p.F646L	0.999	90	0%	117	29.9%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_dsRNA_bind
CCNK	8812	genome.wustl.edu	37	14	99973448	99973448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099402.1	+1	reviewed	p.T361A	0.897	139	0%	181	33.7%	-	-	unknown(0)	tolerated(0.25)	-	NULL
EML1	2009	genome.wustl.edu	37	14	100405650	100405650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008707.1	+1	reviewed	p.C789S	1.000	32	0%	27	44.4%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	superfamily_WD40_like
DEGS2	123099	genome.wustl.edu	37	14	100615443	100615443	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_206918.2	-1	reviewed	p.F229	0.994	23	0%	14	64.3%	-	-	-	-	-	HMMPfam_FA_desaturase
DYNC1H1	1778	genome.wustl.edu	37	14	102452685	102452685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001376.4	+1	reviewed	p.Q708R	1.000	112	0%	119	39.5%	-	-	benign(0.019)	tolerated(1)	neutral(0.001)	HMMPfam_DHC_N1
HSP90AA1	3320	genome.wustl.edu	37	14	102551160	102551161	+	In_Frame_Ins	INS	-	-	TCT	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001017963.2	-1	validated	p.402in_frame_insK	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_HSP90
MOK	5891	genome.wustl.edu	37	14	102718287	102718287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014226.1	-1	provisional	p.Y110C	1.000	80	0%	83	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF839	55778	genome.wustl.edu	37	14	102807772	102807772	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018335.3	+1	validated	p.A680	0.000	45	0%	51	23.5%	-	-	-	-	-	NULL
TNFAIP2	7127	genome.wustl.edu	37	14	103601627	103601627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006291.2	+1	reviewed	p.S632N	1.000	34	0%	47	48.9%	-	-	benign(0.005)	tolerated(1)	-	HMMPfam_Sec6
TDRD9	122402	genome.wustl.edu	37	14	104481084	104481084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153046.2	+1	validated	p.L710S	0.997	72	0%	80	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TDRD9	122402	genome.wustl.edu	37	14	104493207	104493207	+	Silent	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153046.2	+1	validated	p.A1071	0.000	117	0%	134	38.8%	-	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105410843	105410843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138420.2	-1	validated	p.R3649G	0.000	56	1.8%	99	22.2%	-	-	benign(0.077)	tolerated(0.43)	neutral(0.019)	NULL
BTBD6	90135	genome.wustl.edu	37	14	105716288	105716288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033271.2	+1	validated	p.A171V	0.336	11	0%	14	85.7%	-	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
HERC2P2	400322	genome.wustl.edu	37	15	23310009	23310009	+	RNA	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NR_002824.3	-1	validated	NULL	1.000	161	0%	190	8.4%	-	-	-	-	-	-
OCA2	4948	genome.wustl.edu	37	15	28273188	28273188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000275.2	-1	reviewed	p.V115A	0.000	76	0%	62	32.3%	-	-	benign(0.141)	deleterious(0)	neutral(0.457)	NULL
RYR3	6263	genome.wustl.edu	37	15	34153353	34153353	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001036.3	+1	validated	p.L4813	0.985	16	0%	20	45%	-	-	-	-	-	NULL
MEIS2	4212	genome.wustl.edu	37	15	37385801	37385801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_170675.2	-1	reviewed	p.S207F	1.000	80	0%	92	46.7%	-	-	possibly_damaging(0.455)	deleterious(0.04)	deleterious(0.498)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38243323	38243323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152453.2	+1	provisional	p.D252G	0.995	198	0%	296	40.5%	-	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	NULL
BAHD1	22893	genome.wustl.edu	37	15	40751549	40751549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014952.3	+1	validated	p.S296P	0.171	29	0%	30	33.3%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
CHST14	113189	genome.wustl.edu	37	15	40764199	40764199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_130468.3	+1	reviewed	p.F263L	1.000	39	0%	59	44.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_2
CASC5	57082	genome.wustl.edu	37	15	40911208	40911208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_170589.3	+1	validated	p.E151G	1.000	76	0%	105	39%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43748819	43748821	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001141980.1	-1	validated	p.E662in_frame_del	0.998:0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307372	54307372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080534.1	+1	provisional	p.M758V	0.144	104	0%	85	51.8%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
RORA	6095	genome.wustl.edu	37	15	60806817	60806817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_134260.2	-1	reviewed	p.D174G	1.000	178	0%	270	44.4%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LACTB	114294	genome.wustl.edu	37	15	63433623	63433623	+	Silent	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032857.2	+1	reviewed	p.G421	1.000	196	0%	179	44.7%	-	-	-	-	-	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
CA12	771	genome.wustl.edu	37	15	63632938	63632938	+	Silent	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001218.3	-1	reviewed	p.L190	0.277	109	0%	86	31.4%	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
USP3	9960	genome.wustl.edu	37	15	63866345	63866345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006537.2	+1	validated	p.F337L	1.000	54	0%	96	31.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_UCH,superfamily_SSF54001
IGDCC3	9543	genome.wustl.edu	37	15	65621360	65621360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004884.3	-1	validated	p.G778S	0.019	22	0%	14	64.3%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66618192	66618192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133375.3	+1	validated	p.E481G	0.998	225	0%	230	40.4%	-	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_RNB
ARIH1	25820	genome.wustl.edu	37	15	72875619	72875619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005744.3	+1	validated	p.Y554H	1.000	107	0%	119	37%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PML	5371	genome.wustl.edu	37	15	74337160	74337162	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033238.2	+1	reviewed	p.K822in_frame_del	0.849:0.910:0.929	-	-	-	-	-	-	-	-	-	NULL
FBXO22	26263	genome.wustl.edu	37	15	76222412	76222412	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012170.2	+1	reviewed	p.D272E	0.001	193	0%	240	40.8%	-	-	unknown(0)	-	-	NULL
CTSH	1512	genome.wustl.edu	37	15	79221825	79221825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004390.3	-1	reviewed	p.S187G	1.000	32	0%	36	38.9%	-	-	possibly_damaging(0.501)	deleterious(0.02)	deleterious(0.550)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
FAM154B	283726	genome.wustl.edu	37	15	82574757	82574757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008226.1	+1	predicted	p.H184R	1.000	153	0%	191	42.4%	-	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
SLC28A1	9154	genome.wustl.edu	37	15	85438239	85438239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004213.3	+1	validated	p.T116A	0.499	72	0%	80	37.5%	-	-	possibly_damaging(0.908)	tolerated(0.05)	deleterious(0.707)	NULL
SLC28A1	9154	genome.wustl.edu	37	15	85448848	85448848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004213.3	+1	validated	p.F228I	0.983	65	0%	66	45.5%	-	-	benign(0.118)	tolerated(0.35)	neutral(0.030)	HMMPfam_Nucleos_tra2_N
SLC28A1	9154	genome.wustl.edu	37	15	85488017	85488017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004213.3	+1	validated	p.V598A	0.000	173	0%	175	33.1%	-	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
FANCI	55215	genome.wustl.edu	37	15	89844621	89844621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001113378.1	+1	reviewed	p.L985R	0.687	95	0%	169	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RHCG	51458	genome.wustl.edu	37	15	90021123	90021123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016321.1	-1	provisional	p.L307P	1.000	24	0%	25	72%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
ZNF710	374655	genome.wustl.edu	37	15	90611786	90611786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198526.2	+1	validated	p.S473G	1.000	82	0%	87	40.2%	-	-	possibly_damaging(0.685)	tolerated(0.06)	deleterious(0.567)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FURIN	5045	genome.wustl.edu	37	15	91420241	91420241	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002569.2	+1	reviewed	p.L163*	1.000	28	0%	34	26.5%	-	-	-	-	-	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
LYSMD4	145748	genome.wustl.edu	37	15	100269520	100269520	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152449.2	-1	validated	p.P234	0.480	160	0.6%	155	32.3%	-	-	-	-	-	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100533337	100533337	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_139057.2	-1	reviewed	p.C955	0.960	42	0%	33	33.3%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SRRM2	23524	genome.wustl.edu	37	16	2819161	2819163	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016333.3	+1	validated	p.S2636in_frame_del	0.905:0.891:0.109	-	-	-	-	-	-	-	-	-	NULL
ZG16B	124220	genome.wustl.edu	37	16	2882073	2882073	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145252.2	+1	validated	p.G180	0.000	51	0%	65	40%	-	-	-	-	-	superfamily_Mannose-bd_lectin
CREBBP	1387	genome.wustl.edu	37	16	3786728	3786728	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004380.2	-1	reviewed	p.K1495*	0.999	89	1.1%	103	34%	-	-	-	-	-	HMMPfam_DUF906
CREBBP	1387	genome.wustl.edu	37	16	3786792	3786792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004380.2	-1	reviewed	p.C1474fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF906
NMRAL1	57407	genome.wustl.edu	37	16	4511945	4511945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020677.3	-1	provisional	p.Y246H	0.989	37	0%	48	27.1%	-	-	possibly_damaging(0.513)	deleterious(0)	deleterious(0.617)	superfamily_NAD(P)-bd
HMOX2	3163	genome.wustl.edu	37	16	4555578	4555578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001127204.1	+1	reviewed	p.N18S	0.361	14	0%	16	25%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
ENSG00000221809	0	genome.wustl.edu	37	16	5313276	5313276	+	RNA	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000408882	-1	novel	NULL	0.017	100	0%	122	35.2%	-	-	-	-	-	-
RBFOX1	54715	genome.wustl.edu	37	16	7102090	7102090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142334.1	+1	reviewed	p.E6	1.000	47	0%	40	45%	-	-	-	-	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7647385	7647385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145891.2	+1	reviewed	p.T212A	1.000	36	0%	45	37.8%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_SSF54928
SNN	8303	genome.wustl.edu	37	16	11770106	11770106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003498.5	+1	validated	p.Q64R	1.000	13	0%	20	35%	-	-	possibly_damaging(0.478)	deleterious(0.05)	deleterious(0.503)	HMMPfam_SNN_cytoplasm
TXNDC11	51061	genome.wustl.edu	37	16	11781721	11781721	+	Silent	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015914.5	-1	provisional	p.T715	0.984	22	0%	25	48%	-	-	-	-	-	superfamily_Thiordxn-like_fd
KIAA0430	9665	genome.wustl.edu	37	16	15711200	15711200	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014647.3	-1	validated	p.Y971*	1.000	272	0%	293	12.3%	-	-	-	-	-	NULL
TMC5	79838	genome.wustl.edu	37	16	19475197	19475197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001105248.1	+1	validated	p.V446I	1.000	271	0%	300	45.7%	-	-	possibly_damaging(0.799)	tolerated(0.18)	neutral(0.357)	NULL
TMC5	79838	genome.wustl.edu	37	16	19488819	19488819	+	Silent	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001105248.1	+1	validated	p.T716	0.000	262	0%	217	34.6%	-	-	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24573169	24573169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006910.4	+1	reviewed	p.T326A	1.000	170	0%	193	40.4%	-	-	benign(0.181)	deleterious(0.04)	neutral(0.365)	HMMPfam_U-box,superfamily_RING/U-box
SBK1	388228	genome.wustl.edu	37	16	28330370	28330370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001024401.2	+1	provisional	p.F94Y	1.000	154	0%	258	34.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TAOK2	9344	genome.wustl.edu	37	16	29997696	29997696	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016151.2	+1	validated	p.T701	0.968	49	0%	50	60%	-	-	-	-	-	NULL
TAOK2	9344	genome.wustl.edu	37	16	29997828	29997828	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016151.2	+1	validated	p.V745	1.000	129	0%	79	34.2%	-	-	-	-	-	NULL
DOC2A	8448	genome.wustl.edu	37	16	30018158	30018158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003586.2	-1	reviewed	p.A276T	1.000	42	0%	21	47.6%	-	-	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PPP4C	5531	genome.wustl.edu	37	16	30094805	30094805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002720.1	+1	provisional	p.R132C	1.000	75	0%	78	42.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
FBRS	64319	genome.wustl.edu	37	16	30680891	30680891	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001105079.1	+1	validated	p.A436	1.000	10	0%	42	59.5%	-	-	-	-	-	NULL
HSD3B7	80270	genome.wustl.edu	37	16	30999488	30999488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_025193.3	+1	reviewed	p.T365M	0.000	9	0.000	13	0.385	-	-	possibly_damaging(0.95)	tolerated(0.08)	deleterious(0.694)	NULL
STX1B	112755	genome.wustl.edu	37	16	31004724	31004724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052874.3	-1	validated	p.S207G	1.000	76	0%	86	34.9%	-	-	benign(0.345)	deleterious(0.01)	deleterious(0.515)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
FUS	2521	genome.wustl.edu	37	16	31195222	31195222	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004960.3	+1	reviewed	p.T78	0.007	71	0%	76	43.4%	-	-	-	-	-	NULL
MYLK3	91807	genome.wustl.edu	37	16	46761284	46761284	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182493.2	-1	validated	p.D593V	0.999	62	0%	54	37%	-	-	possibly_damaging(0.668)	deleterious(0.04)	deleterious(0.585)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ENSG00000247487	0	genome.wustl.edu	37	16	48382261	48382261	+	RNA	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000501305	-1	known	NULL	0.000	52	0%	73	32.9%	-	-	-	-	-	-
RBL2	5934	genome.wustl.edu	37	16	53488714	53488714	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005611.3	+1	validated	p.V381fs	1.000	-	-	-	-	-	-	-	-	-	NULL
NLRC5	84166	genome.wustl.edu	37	16	57092907	57092907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032206.3	+1	validated	p.Q1285R	0.978	548	0.2%	600	11.7%	-	-	possibly_damaging(0.822)	tolerated(0.3)	neutral(0.340)	HMMSmart_SM00368,superfamily_RNI-like
ARL2BP	23568	genome.wustl.edu	37	16	57286138	57286138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012106.3	+1	reviewed	p.S151P	0.865	70	0%	70	34.3%	-	-	possibly_damaging(0.916)	deleterious(0.02)	deleterious(0.750)	NULL
CMTM4	146223	genome.wustl.edu	37	16	66657328	66657328	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178818.2	-1	reviewed	p.A147	0.250	22	0%	24	16.7%	-	-	-	-	-	HMMPfam_MARVEL
EXOC3L1	283849	genome.wustl.edu	37	16	67220774	67220774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178516.3	-1	validated	p.Q391R	0.997	50	0%	35	45.7%	-	-	possibly_damaging(0.513)	tolerated(0.27)	neutral(0.206)	HMMPfam_Sec6
EDC4	23644	genome.wustl.edu	37	16	67914624	67914624	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014329.3	+1	validated	p.R754	0.991	152	0%	143	34.3%	-	-	-	-	-	NULL
SLC12A4	6560	genome.wustl.edu	37	16	67982045	67982045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005072.4	-1	validated	p.Y589C	1.000	14	0%	13	76.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
TMCO7	79613	genome.wustl.edu	37	16	68901069	68901069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024562.1	+1	validated	p.M314L	0.992	164	0%	212	42%	-	-	possibly_damaging(0.651)	tolerated(0.34)	neutral(0.252)	NULL
HAS3	3038	genome.wustl.edu	37	16	69143689	69143689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005329.2	+1	reviewed	p.Y131H	1.000	12	0%	14	28.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53448
NFAT5	10725	genome.wustl.edu	37	16	69681398	69681399	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138713.2	+1	reviewed	p.F243fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SF3B3	23450	genome.wustl.edu	37	16	70602200	70602200	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012426.4	+1	reviewed	p.Y989	0.979	106	0%	102	37.3%	-	-	-	-	-	HMMPfam_CPSF_A
ZFHX3	463	genome.wustl.edu	37	16	72993669	72993669	+	Missense_Mutation	SNP	C	C	A	rs34511490		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006885.3	-1	reviewed	p.V126L	1.000	24	0%	22	45.5%	-	-	unknown(0)	-	-	NULL
MON1B	22879	genome.wustl.edu	37	16	77228363	77228363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014940.2	+1	validated	p.R203C	0.996	181	0%	210	12.9%	-	-	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	HMMPfam_Mon1
WWOX	51741	genome.wustl.edu	37	16	79245713	79245713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000402655	+1	known	p.W206C	0.001	40	0%	51	49%	-	-	unknown(0)	deleterious(0)	-	NULL
CMIP	80790	genome.wustl.edu	37	16	81735398	81735398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198390.2	+1	validated	p.K630R	1.000	32	0%	25	40%	-	-	benign(0.02)	tolerated(0.25)	neutral(0.038)	NULL
MBTPS1	8720	genome.wustl.edu	37	16	84087942	84087942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000347334	-1	known	p.R665M	0.000	13	0.000	6	0.667	-	-	-	-	-	NULL
MBTPS1	8720	genome.wustl.edu	37	16	84108231	84108231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003791.2	-1	reviewed	p.M522L	1.000	77	0%	63	39.7%	-	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
MTHFSD	64779	genome.wustl.edu	37	16	86575317	86575317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022764.2	-1	validated	p.I222V	0.995	19	0%	26	26.9%	-	-	possibly_damaging(0.613)	tolerated(0.18)	neutral(0.269)	superfamily_SSF100950
ZCCHC14	23174	genome.wustl.edu	37	16	87446721	87446721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015144.2	-1	validated	p.S425G	1.000	26	0%	29	20.7%	-	-	unknown(0)	tolerated(0.3)	-	NULL
KLHDC4	54758	genome.wustl.edu	37	16	87742009	87742009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017566.3	-1	validated	p.E504A	0.188	28	0%	29	44.8%	-	-	unknown(0)	tolerated(0.19)	-	NULL
C16orf55	124045	genome.wustl.edu	37	16	89735763	89735763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153025.1	+1	predicted	p.A93V	0.425	78	0%	69	37.7%	-	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
RPA1	6117	genome.wustl.edu	37	17	1782921	1782921	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002945.3	+1	validated	p.E340	1.000	216	0%	224	51.3%	-	-	-	-	-	superfamily_Nucleic acid-binding proteins
METTL16	79066	genome.wustl.edu	37	17	2344825	2344825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024086.3	-1	validated	p.C253R	1.000	21	0%	42	50%	-	-	benign(0.156)	tolerated(0.28)	neutral(0.045)	HMMPfam_Methyltransf_10
ANKFY1	51479	genome.wustl.edu	37	17	4098277	4098277	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016376.3	-1	validated	p.A456	0.010	63	0%	47	46.8%	-	-	-	-	-	superfamily_ANK
ZMYND15	84225	genome.wustl.edu	37	17	4648584	4648584	+	Silent	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001136046.1	+1	provisional	p.V657	1.000	66	0%	61	9.8%	-	-	-	-	-	NULL
USP6	9098	genome.wustl.edu	37	17	5072305	5072305	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004505.2	+1	validated	p.K1158*	1.000	108	0%	125	41.6%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
TP53	7157	genome.wustl.edu	37	17	7578458	7578458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000546.4	-1	reviewed	p.R158C	0.981	88	0%	82	45.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_p53-like transcription factors,HMMPfam_P53
CHD3	1107	genome.wustl.edu	37	17	7814976	7814976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000439235	+1	known	p.A369V	1.000	35	0%	42	54.8%	-	-	unknown(0)	-	-	NULL
CNTROB	116840	genome.wustl.edu	37	17	7852725	7852725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000380262	+1	known	p.R892H	1.000	134	1.5%	112	40.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C17orf59	54785	genome.wustl.edu	37	17	8092635	8092635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017622.2	-1	validated	p.V275A	1.000	20	0%	17	29.4%	-	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	HMMPfam_DUF2365
PFAS	5198	genome.wustl.edu	37	17	8158377	8158377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012393.2	+1	reviewed	p.I104T	0.998	39	0%	28	32.1%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_PurS-like
NDEL1	81565	genome.wustl.edu	37	17	8349146	8349146	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030808.3	+1	reviewed	p.D68	1.000	188	0%	219	36.1%	-	-	-	-	-	NULL
MYH10	4628	genome.wustl.edu	37	17	8395626	8395626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005964.1	-1	validated	p.V1523M	1.000	76	0%	70	41.4%	-	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH4	4622	genome.wustl.edu	37	17	10348569	10348569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017533.2	-1	validated	p.K1760N	1.000	199	0%	258	50.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10352035	10352035	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017533.2	-1	validated	p.E1477	1.000	119	0%	167	45.5%	-	-	-	-	-	HMMPfam_Myosin_tail_1
TRPV2	51393	genome.wustl.edu	37	17	16335418	16335418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016113.3	+1	reviewed	p.L598S	1.000	67	0%	50	34%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans
COPS3	8533	genome.wustl.edu	37	17	17165363	17165363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003653.2	-1	reviewed	p.Y227H	1.000	81	0%	83	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C17orf39	79018	genome.wustl.edu	37	17	17962207	17962207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024052.4	+1	validated	p.Y211C	1.000	40	0%	32	31.2%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Vac_ImportDeg
LLGL1	3996	genome.wustl.edu	37	17	18140155	18140155	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004140.3	+1	reviewed	p.C505S	1.000	6	0.000	14	0.357	-	-	benign(0.002)	tolerated(0.88)	-	superfamily_WD40 repeat-like
TOP3A	7156	genome.wustl.edu	37	17	18206019	18206019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004618.3	-1	reviewed	p.V173A	1.000	53	0%	55	32.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Toprim
ULK2	9706	genome.wustl.edu	37	17	19689302	19689302	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142610.1	-1	reviewed	p.S733	0.997	42	0%	50	34%	-	-	-	-	-	NULL
ULK2	9706	genome.wustl.edu	37	17	19700871	19700871	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142610.1	-1	reviewed	p.P549	0.395	66	0%	74	44.6%	-	-	-	-	-	NULL
TMEM199	147007	genome.wustl.edu	37	17	26686380	26686380	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152464.1	+1	provisional	p.L110	1.000	26	0%	21	28.6%	-	-	-	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26961966	26961966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014680.2	-1	validated	p.V880A	1.000	184	0%	224	34.4%	-	-	benign(0.046)	tolerated(0.39)	neutral(0.018)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26962602	26962602	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014680.2	-1	validated	p.L668*	0.982	58	0%	51	33.3%	-	-	-	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26964176	26964176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014680.2	-1	validated	p.V595A	0.997	40	0%	47	36.2%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
RPL23A	6147	genome.wustl.edu	37	17	27047808	27047810	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000984.5	+1	reviewed	p.K39in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L23eN
C17orf63	55731	genome.wustl.edu	37	17	27086641	27086641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001077498.1	-1	validated	p.I112M	0.999	20	0%	29	44.8%	-	-	possibly_damaging(0.931)	deleterious(0.04)	deleterious(0.726)	NULL
FLOT2	2319	genome.wustl.edu	37	17	27207792	27207792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004475.2	-1	reviewed	p.N396T	1.000	69	0%	67	26.9%	-	-	benign(0)	tolerated(1)	-	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28380790	28380790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198529.3	+1	validated	p.Q606H	0.000	444	0%	495	30.5%	-	-	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	superfamily_EF-hand
CRLF3	51379	genome.wustl.edu	37	17	29119552	29119552	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015986.3	-1	validated	p.R289G	1.000	250	0%	272	33.5%	-	-	probably_damaging(1)	tolerated(0.67)	deleterious(0.502)	NULL
SLFN5	162394	genome.wustl.edu	37	17	33588006	33588006	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_144975.3	+1	validated	p.P343	0.115	93	1.1%	122	36.1%	-	-	-	-	-	NULL
ACACA	31	genome.wustl.edu	37	17	35616397	35616397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198834.1	-1	reviewed	p.Y462C	1.000	123	0%	157	40.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
TADA2A	6871	genome.wustl.edu	37	17	35825651	35825651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133439.2	+1	reviewed	p.W277R	0.990	84	0%	90	28.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
CDC6	990	genome.wustl.edu	37	17	38457742	38457742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001254.3	+1	reviewed	p.V492A	1.000	157	0%	167	38.3%	-	-	possibly_damaging(0.635)	deleterious(0)	deleterious(0.666)	HMMPfam_Cdc6_C,superfamily_SSF46785
CCR7	1236	genome.wustl.edu	37	17	38711262	38711262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001838.2	-1	reviewed	p.N290S	0.941	106	0%	113	35.4%	-	-	benign(0.004)	tolerated(0.43)	neutral(0.013)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KRTAP9-2	83899	genome.wustl.edu	37	17	39382914	39382914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_031961.2	+1	reviewed	p.H3R	0.629	165	0%	201	36.8%	-	-	unknown(0)	tolerated(0.24)	-	HMMPfam_Keratin_B2
KRT9	3857	genome.wustl.edu	37	17	39726462	39726462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000226.3	-1	reviewed	p.L218P	0.000	184	0%	169	36.7%	-	-	possibly_damaging(0.919)	tolerated(0.11)	deleterious(0.641)	HMMPfam_Filament
KRT17	3872	genome.wustl.edu	37	17	39777034	39777034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000422.2	-1	reviewed	p.L353P	1.000	63	0%	40	42.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
TTC25	83538	genome.wustl.edu	37	17	40117322	40117322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000377543	+1	known	p.R614G	0.322	89	0%	79	38%	-	-	-	-	-	NULL
KAT2A	2648	genome.wustl.edu	37	17	40266936	40266936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021078.2	-1	validated	p.S665P	1.000	98	0%	70	35.7%	-	-	possibly_damaging(0.484)	tolerated(0.15)	neutral(0.401)	NULL
STAT3	6774	genome.wustl.edu	37	17	40500471	40500471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_139276.2	-1	reviewed	p.Y22H	1.000	92	0%	114	37.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
TUBG1	7283	genome.wustl.edu	37	17	40766526	40766526	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001070.4	+1	reviewed	p.L337	1.000	75	1.3%	50	48%	-	-	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
BECN1	8678	genome.wustl.edu	37	17	40970645	40970645	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003766.3	-1	validated	p.P135	0.010	99	0%	69	36.2%	-	-	-	-	-	HMMPfam_APG6
AARSD1	80755	genome.wustl.edu	37	17	41106908	41106908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001136042.2	-1	validated	p.V487A	1.000	109	0%	119	32.8%	-	-	benign(0.245)	tolerated(0.22)	neutral(0.067)	NULL
DHX8	1659	genome.wustl.edu	37	17	41585277	41585277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004941.1	+1	reviewed	p.I737T	1.000	261	0%	351	45.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_DEXDc,superfamily_SSF52540
MPP2	4355	genome.wustl.edu	37	17	41957188	41957188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005374.3	-1	reviewed	p.A439T	0.003	63	0%	53	43.4%	-	-	benign(0.018)	tolerated(0.56)	neutral(0.007)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
EFTUD2	9343	genome.wustl.edu	37	17	42953317	42953317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004247.3	-1	validated	p.V285A	1.000	210	0%	218	31.7%	-	-	possibly_damaging(0.704)	deleterious(0.03)	deleterious(0.618)	HMMPfam_GTP_EFTU,superfamily_SSF52540
MAP3K14	9020	genome.wustl.edu	37	17	43362193	43362193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000344686	-1	known	p.C425R	1.000	7	0.000	6	0.667	-	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SP6	80320	genome.wustl.edu	37	17	45924969	45924969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_199262.2	-1	validated	p.R276H	1.000	23	0%	21	23.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VEZF1	7716	genome.wustl.edu	37	17	56056604	56056604	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007146.2	-1	validated	p.Q349	0.934	91	7.7%	143	21%	-	-	-	-	-	NULL
HSF5	124535	genome.wustl.edu	37	17	56557627	56557627	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080439.1	-1	provisional	p.G184	1.000	80	0%	107	35.5%	-	-	-	-	-	HMMPfam_HSF_DNA-bind
HEATR6	63897	genome.wustl.edu	37	17	58147117	58147117	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022070.4	-1	validated	p.P298	0.986	63	0%	81	33.3%	-	-	-	-	-	NULL
FTSJ3	117246	genome.wustl.edu	37	17	61902073	61902073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017647.3	-1	reviewed	p.A281T	1.000	134	0%	91	49.5%	-	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
SCN4A	6329	genome.wustl.edu	37	17	62036661	62036661	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000334.4	-1	reviewed	p.N661	0.359	40	0%	40	17.5%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FADS6	283985	genome.wustl.edu	37	17	72878808	72878808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000413142	-1	known	p.R47H	0.000	14	0%	10	50%	-	-	unknown(0)	-	-	NULL
GGA3	23163	genome.wustl.edu	37	17	73234436	73234436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138619.2	-1	reviewed	p.A699V	0.997	41	0%	37	54.1%	-	-	benign(0.313)	tolerated(0.66)	neutral(0.100)	HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain
GALK1	2584	genome.wustl.edu	37	17	73758856	73758856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000154.1	-1	reviewed	p.R241H	0.999	10	0%	15	60%	-	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	superfamily_SSF55060
UNC13D	201294	genome.wustl.edu	37	17	73836863	73836863	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_199242.2	-1	reviewed	p.T221	0.995	59	0%	46	56.5%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
EVPL	2125	genome.wustl.edu	37	17	74003314	74003314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001988.2	-1	validated	p.L1991Q	1.000	77	0%	63	30.2%	-	-	possibly_damaging(0.476)	deleterious(0)	deleterious(0.602)	HMMSmart_SM00250,superfamily_Plakin repeat
EXOC7	23265	genome.wustl.edu	37	17	74093947	74093947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001145297.2	-1	validated	p.H190Q	1.000	70	0%	53	52.8%	-	-	benign(0.002)	tolerated(1)	-	NULL
UBE2O	63893	genome.wustl.edu	37	17	74395862	74395862	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_022066.3	-1	validated	p.P432	0.003	50	0%	36	41.7%	-	-	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76563079	76563079	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000389840	-1	known	e9+2	0.889	12	0%	24	29.2%	-	-	-	-	-	-
ACTG1	71	genome.wustl.edu	37	17	79478637	79478637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001614.2	-1	reviewed	p.F127V	1.000	21	0%	25	36%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
HGS	9146	genome.wustl.edu	37	17	79663641	79663641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004712.3	+1	provisional	p.Y524C	1.000	11	0%	10	80%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP192	55125	genome.wustl.edu	37	18	13067922	13067922	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032142.3	+1	validated	p.H931	0.996	130	0%	152	32.9%	-	-	-	-	-	NULL
C18orf8	29919	genome.wustl.edu	37	18	21109678	21109678	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013326.3	+1	validated	e16+2	1.000	136	0%	132	33.3%	-	-	-	-	-	-
LAMA3	3909	genome.wustl.edu	37	18	21451571	21451571	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198129.1	+1	reviewed	p.A1648	0.000	40	0%	53	34%	-	-	-	-	-	HMMPfam_Laminin_B,superfamily_EGF/Laminin
CABYR	26256	genome.wustl.edu	37	18	21739590	21739590	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000399496	+1	known	p.D232	0.993	160	0%	161	33.5%	-	-	-	-	-	NULL
OSBPL1A	114876	genome.wustl.edu	37	18	21758054	21758054	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_080597.2	-1	reviewed	p.S672	0.959	118	0%	115	47.8%	-	-	-	-	-	HMMPfam_Oxysterol_BP
IMPACT	55364	genome.wustl.edu	37	18	22029873	22029873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018439.3	+1	validated	p.C284S	1.000	100	0%	139	51.1%	-	-	benign(0.01)	tolerated(0.34)	neutral(0.024)	HMMPfam_UPF0029,superfamily_Ribosomal protein S5 domain 2-like
ZNF521	25925	genome.wustl.edu	37	18	22807259	22807259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015461.2	-1	validated	p.R208H	1.000	146	0%	151	48.3%	-	-	probably_damaging(0.983)	tolerated(0.05)	deleterious(0.774)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KCTD1	284252	genome.wustl.edu	37	18	24039824	24039824	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142730.1	-1	validated	p.E733	1.000	106	0%	101	40.6%	-	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
PIK3C3	5289	genome.wustl.edu	37	18	39617663	39617663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002647.2	+1	validated	p.L616R	1.000	184	0%	318	31.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like
RPL17	6139	genome.wustl.edu	37	18	47014920	47014920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000985.3	-1	reviewed	p.L175P	1.000	103	0%	83	38.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
C19orf21	126353	genome.wustl.edu	37	19	758688	758688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173481.2	+1	predicted	p.N581S	0.000	37	0%	52	32.7%	-	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
LOC100132469	100132469	genome.wustl.edu	37	19	2476418	2476418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_001726134.1	-1	model	p.G95A	0.000	15	0%	16	50%	-	-	-	-	-	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4207577	4207577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133475.1	+1	provisional	p.A206V	0.465	184	0%	232	47%	-	-	possibly_damaging(0.83)	tolerated(0.06)	deleterious(0.638)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PLIN4	729359	genome.wustl.edu	37	19	4512285	4512285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080400.1	-1	provisional	p.G549S	0.436	74	0%	72	41.7%	-	-	probably_damaging(1)	tolerated(0.67)	deleterious(0.502)	NULL
PLIN4	729359	genome.wustl.edu	37	19	4512550	4512550	+	Silent	SNP	G	G	A	rs180803971	by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001080400.1	-1	provisional	p.T460	0.000	57	0%	67	47.8%	-	-	-	-	-	NULL
DPP9	91039	genome.wustl.edu	37	19	4714108	4714108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_139159.4	-1	reviewed	p.R100C	1.000	9	0.000	9	0.444	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPRS	5802	genome.wustl.edu	37	19	5265111	5265111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002850.3	-1	reviewed	p.S159N	1.000	85	0%	58	51.7%	-	-	possibly_damaging(0.629)	tolerated(0.1)	deleterious(0.506)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SAFB2	9667	genome.wustl.edu	37	19	5612549	5612549	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014649.2	-1	validated	e6+2	1.000	66	0%	66	39.4%	-	-	-	-	-	-
VAV1	7409	genome.wustl.edu	37	19	6850766	6850766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005428.2	+1	reviewed	p.T739A	0.000	83	0%	55	36.4%	-	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
CD209	30835	genome.wustl.edu	37	19	7811382	7811382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021155.3	-1	reviewed	p.L48I	0.000	78	0%	80	11.3%	-	-	unknown(0)	tolerated(0.11)	-	NULL
FBN3	84467	genome.wustl.edu	37	19	8206926	8206926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032447.3	-1	reviewed	p.T213A	1.000	18	0%	25	20%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_TB,superfamily_TB module/8-cys domain
PRAM1	84106	genome.wustl.edu	37	19	8564295	8564295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032152.3	-1	reviewed	p.Q133*	0.001	49	0%	39	51.3%	-	-	-	-	-	NULL
ADAMTS10	81794	genome.wustl.edu	37	19	8660650	8660650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030957.2	-1	reviewed	p.Y492C	1.000	145	0%	147	31.3%	-	-	possibly_damaging(0.823)	tolerated(0.06)	deleterious(0.634)	NULL
ZNF317	57693	genome.wustl.edu	37	19	9271126	9271126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020933.3	+1	provisional	p.A269T	0.000	150	0%	180	48.3%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR7D4	125958	genome.wustl.edu	37	19	9325321	9325321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005191.1	-1	provisional	p.N65D	1.000	282	0%	275	38.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC130	81576	genome.wustl.edu	37	19	13873445	13873445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030818.2	+1	provisional	p.S252G	0.994	16	0%	10	50%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_DUF572
AKAP8	10270	genome.wustl.edu	37	19	15472541	15472541	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005858.2	-1	reviewed	p.K465	1.000	35	0%	42	23.8%	-	-	-	-	-	HMMPfam_AKAP95
PGLYRP2	114770	genome.wustl.edu	37	19	15579486	15579486	+	Silent	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_052890.3	-1	validated	p.T573	0.000	83	0%	73	54.8%	-	-	-	-	-	NULL
CYP4F2	8529	genome.wustl.edu	37	19	16003355	16003355	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001082.3	-1	reviewed	p.F127	0.796	208	0%	156	44.2%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CHERP	10523	genome.wustl.edu	37	19	16641397	16641397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006387.5	-1	validated	p.Q292R	1.000	19	0%	22	22.7%	-	-	benign(0.068)	deleterious(0.04)	neutral(0.353)	superfamily_ENTH/VHS domain
SIN3B	23309	genome.wustl.edu	37	19	16973372	16973372	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015260.1	+1	provisional	e9+2	1.000	37	0%	30	33.3%	-	-	-	-	-	-
CPAMD8	27151	genome.wustl.edu	37	19	17122289	17122289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000443236	-1	known	p.G215D	1.000	113	0%	146	10.3%	-	-	-	-	-	HMMPfam_A2M_N
ANO8	57719	genome.wustl.edu	37	19	17436036	17436036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020959.2	-1	validated	p.T941A	0.892	18	0%	17	35.3%	-	-	unknown(0)	tolerated(0.32)	-	NULL
GTPBP3	84705	genome.wustl.edu	37	19	17449797	17449797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_133644.2	+1	validated	p.G209D	0.999	23	0%	27	18.5%	-	-	benign(0.418)	deleterious(0.01)	deleterious(0.541)	superfamily_SSF52540
FCHO1	23149	genome.wustl.edu	37	19	17886852	17886852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015122.2	+1	validated	p.R355H	0.586	33	0%	24	41.7%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
ELL	8178	genome.wustl.edu	37	19	18572531	18572531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006532.3	-1	validated	p.G201R	0.453	27	0%	24	33.3%	-	-	possibly_damaging(0.783)	tolerated(0.42)	neutral(0.307)	HMMPfam_ELL
DDX49	54555	genome.wustl.edu	37	19	19033201	19033201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_019070.4	+1	validated	p.I172F	0.998	9	0.000	12	0.583	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
SUGP2	10147	genome.wustl.edu	37	19	19105235	19105235	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001017392.3	-1	reviewed	p.T1063	0.399	166	0%	154	38.3%	-	-	-	-	-	NULL
ZNF14	7561	genome.wustl.edu	37	19	19823179	19823179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021030.2	-1	reviewed	p.E304G	1.000	176	0%	194	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
ZNF14	7561	genome.wustl.edu	37	19	19823414	19823414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021030.2	-1	reviewed	p.K226E	0.721	178	0%	215	35.3%	-	-	possibly_damaging(0.922)	tolerated(0.27)	neutral(0.405)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF14	7561	genome.wustl.edu	37	19	19823576	19823576	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_021030.2	-1	reviewed	p.K172Q	0.091	214	0%	241	34%	-	-	possibly_damaging(0.869)	deleterious(0.02)	deleterious(0.720)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF493	284443	genome.wustl.edu	37	19	21607382	21607382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001076678.2	+1	validated	p.S641P	0.000	152	0%	204	30.9%	-	-	benign(0.048)	tolerated(0.29)	neutral(0.032)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF507	22847	genome.wustl.edu	37	19	32845078	32845078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001136156.1	+1	validated	p.T448A	0.979	212	0%	201	29.4%	-	-	benign(0.003)	tolerated(0.34)	neutral(0.023)	NULL
WDR88	126248	genome.wustl.edu	37	19	33639782	33639782	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173479.3	+1	validated	p.D215	0.612	155	0%	138	42%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
UBA2	10054	genome.wustl.edu	37	19	34935951	34935951	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005499.2	+1	validated	p.D232	1.000	159	0%	170	35.3%	-	-	-	-	-	superfamily_MoeB
ZNF599	148103	genome.wustl.edu	37	19	35260390	35260390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001007248.2	-1	validated	p.Q30R	0.994	86	0%	68	26.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF792	126375	genome.wustl.edu	37	19	35449405	35449405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_175872.4	-1	validated	p.C452R	0.367	208	0%	188	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HAUS5	23354	genome.wustl.edu	37	19	36110931	36110931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015302.1	+1	validated	p.T475M	0.000	112	0%	132	43.9%	-	-	benign(0.007)	tolerated(0.16)	neutral(0.059)	NULL
LOC644189	644189	genome.wustl.edu	37	19	36913675	36913675	+	RNA	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XR_016949.3	+1	model	NULL	0.383	34	0%	39	12.8%	-	-	-	-	-	-
HKR1	284459	genome.wustl.edu	37	19	37854290	37854290	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181786.2	+1	provisional	p.G531	0.991	118	0%	98	39.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SIPA1L3	23094	genome.wustl.edu	37	19	38573598	38573598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015073.1	+1	validated	p.S465G	0.884	24	0%	20	45%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
SIRT2	22933	genome.wustl.edu	37	19	39374290	39374290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012237.2	-1	reviewed	p.E203G	1.000	61	0%	54	29.6%	-	-	possibly_damaging(0.759)	tolerated(0.13)	deleterious(0.534)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
SPTBN4	57731	genome.wustl.edu	37	19	41038638	41038638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020971.2	+1	reviewed	p.E1352G	1.000	44	0%	65	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ZNF227	7770	genome.wustl.edu	37	19	44740328	44740328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182490.1	+1	provisional	p.G582E	1.000	192	0%	188	39.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRKD2	25865	genome.wustl.edu	37	19	47181872	47181872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001079880.1	-1	reviewed	p.F707L	0.997	37	0%	47	40.4%	-	-	possibly_damaging(0.663)	tolerated(0.1)	deleterious(0.521)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ARHGAP35	2909	genome.wustl.edu	37	19	47424900	47424900	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004491.4	+1	reviewed	p.E990fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47969299	47969299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015063.2	-1	validated	p.V121A	1.000	43	0%	42	26.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_Ca_ex
LIG1	3978	genome.wustl.edu	37	19	48657201	48657201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000234.1	-1	reviewed	p.T132A	0.229	49	0%	48	52.1%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
CGB1	114335	genome.wustl.edu	37	19	49539414	49539414	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033377.1	-1	reviewed	p.C52	1.000	30	0%	29	24.1%	-	-	-	-	-	HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,superfamily_SSF57501
AP2A1	160	genome.wustl.edu	37	19	50285029	50285029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014203.2	+1	reviewed	p.A28V	1.000	53	0%	49	34.7%	-	-	probably_damaging(0.956)	tolerated(0.15)	deleterious(0.641)	superfamily_ARM repeat
VRK3	51231	genome.wustl.edu	37	19	50498069	50498069	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016440.3	-1	reviewed	e7+2	0.997	25	0%	20	45%	-	-	-	-	-	-
SIGLEC7	27036	genome.wustl.edu	37	19	51646000	51646000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014385.2	+1	validated	p.M125T	0.045	179	0%	167	44.3%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51955788	51955788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014442.2	-1	validated	p.T449A	0.000	79	0%	75	58.7%	-	-	benign(0.133)	tolerated(0.19)	neutral(0.060)	NULL
FPR2	2358	genome.wustl.edu	37	19	52272432	52272432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005738.1	+1	validated	p.T174I	0.000	253	0%	241	32.8%	-	-	benign(0.004)	tolerated(0.61)	neutral(0.004)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF611	81856	genome.wustl.edu	37	19	53208435	53208435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_030972.3	-1	validated	p.N625D	0.055	739	0%	691	31.4%	-	-	benign(0.009)	tolerated(0.2)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF28	7576	genome.wustl.edu	37	19	53302947	53302947	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006969.2	-1	validated	p.K664	1.000	296	0%	409	35.5%	-	-	-	-	-	superfamily_SSF57667
ZNF813	126017	genome.wustl.edu	37	19	53993632	53993633	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001004301.3	+1	validated	p.S50fs	0.934:0.930	-	-	-	-	-	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
KIR3DL2	3812	genome.wustl.edu	37	19	55367217	55367217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006737.2	+1	reviewed	p.R267C	0.000	217	0%	240	19.6%	-	-	possibly_damaging(0.658)	deleterious(0)	deleterious(0.677)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
BRSK1	84446	genome.wustl.edu	37	19	55805407	55805407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032430.1	+1	validated	p.N161D	1.000	150	0%	169	46.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF547	284306	genome.wustl.edu	37	19	57889379	57889379	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_173631.2	+1	validated	p.V345	0.615	302	0%	313	44.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF772	400720	genome.wustl.edu	37	19	57986365	57986365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000415705	-1	known	p.M97V	0.000	136	0.7%	182	37.4%	-	-	-	-	-	NULL
ZNF587	84914	genome.wustl.edu	37	19	58352204	58352204	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_002343662.1	+1	model	e4-2	0.953	73	0%	83	21.7%	-	-	-	-	-	-
ZNF587	84914	genome.wustl.edu	37	19	58370032	58370032	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000339656	+1	known	p.A84	0.028	323	0%	302	29.8%	-	-	-	-	-	NULL
TRIM28	10155	genome.wustl.edu	37	19	59059218	59059218	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005762.2	+1	reviewed	p.L300Q	0.996	23	0%	16	50%	-	-	benign(0.149)	deleterious(0.03)	neutral(0.378)	HMMSmart_SM00502
NRSN2	80023	genome.wustl.edu	37	20	330288	330288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_024958.2	+1	validated	p.M1V	0.576	44	0%	31	35.5%	-	-	benign(0.008)	-	-	NULL
SLC52A3	113278	genome.wustl.edu	37	20	744386	744386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033409.3	-1	validated	p.G277C	0.000	38	0%	28	39.3%	-	-	possibly_damaging(0.943)	tolerated(0.05)	deleterious(0.733)	NULL
SIRPD	128646	genome.wustl.edu	37	20	1532528	1532528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_178460.2	-1	validated	p.N77S	0.058	83	0%	117	15.4%	-	-	benign(0.019)	deleterious(0)	neutral(0.446)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SIRPB1	10326	genome.wustl.edu	37	20	1552470	1552470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006065.3	-1	reviewed	p.L216P	0.006	149	0%	161	39.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
ENSG00000250798	0	genome.wustl.edu	37	20	3127013	3127015	+	RNA	DEL	AAA	AAA	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000502279	+1	novel	NULL	0.005:0.005:0.004	-	-	-	-	-	-	-	-	-	-
ATRN	8455	genome.wustl.edu	37	20	3540041	3540041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_139321.2	+1	reviewed	p.Y372H	1.000	116	0%	144	36.8%	-	-	benign(0.042)	deleterious(0)	neutral(0.447)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
FERMT1	55612	genome.wustl.edu	37	20	6077679	6077679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017671.4	-1	reviewed	p.Y320C	1.000	296	0%	372	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
CSRP2BP	57325	genome.wustl.edu	37	20	18142496	18142496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020536.4	+1	reviewed	p.T239A	1.000	145	0%	208	44.7%	-	-	benign(0.076)	tolerated(0.26)	neutral(0.040)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18370409	18370409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001099407.1	-1	validated	p.K652E	0.892	162	0%	213	42.3%	-	-	possibly_damaging(0.916)	tolerated(0.12)	deleterious(0.627)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
NINL	22981	genome.wustl.edu	37	20	25457050	25457055	+	In_Frame_Del	DEL	CTCCCA	CTCCCA	-	rs68078266	byCluster;by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	CTCCCA	CTCCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_025176.4	-1	validated	p.WE958in_frame_del	0.033:0.033:0.053:0.050:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
BPIFB4	149954	genome.wustl.edu	37	20	31671642	31671642	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_182519.2	+1	validated	p.G213	0.981	48	0%	32	37.5%	-	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328
MYH7B	57644	genome.wustl.edu	37	20	33568515	33568515	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020884.3	+1	reviewed	p.N201	0.985	101	0%	85	16.5%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
C20orf152	140894	genome.wustl.edu	37	20	34618341	34618341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_080834.1	+1	predicted	p.L497P	0.869	274	0%	297	29.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SAMHD1	25939	genome.wustl.edu	37	20	35579999	35579999	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015474.3	-1	reviewed	p.D16	0.979	93	0%	117	44.4%	-	-	-	-	-	NULL
TOP1	7150	genome.wustl.edu	37	20	39742794	39742794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003286.2	+1	reviewed	p.R546Q	1.000	106	0%	143	51%	-	-	benign(0.121)	tolerated(0.75)	neutral(0.011)	superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I
CHD6	84181	genome.wustl.edu	37	20	40045877	40045877	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032221.3	-1	reviewed	p.L2080	0.311	89	0%	115	47%	-	-	-	-	-	NULL
EYA2	2139	genome.wustl.edu	37	20	45771768	45771768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005244.4	+1	reviewed	p.L320P	1.000	43	0%	54	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase
NCOA3	8202	genome.wustl.edu	37	20	46279845	46279845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_181659.2	+1	reviewed	p.Q1257	0.790	48	2.1%	35	17.1%	-	-	-	-	-	NULL
PREX1	57580	genome.wustl.edu	37	20	47246062	47246062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020820.3	-1	reviewed	p.L1564P	1.000	52	1.9%	40	42.5%	-	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
SLC9A8	23315	genome.wustl.edu	37	20	48439605	48439605	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015266.1	+1	validated	p.C72	1.000	81	0%	84	32.1%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
PARD6B	84612	genome.wustl.edu	37	20	49366800	49366800	+	Silent	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032521.2	+1	reviewed	p.I298	0.702	193	0%	212	47.6%	-	-	-	-	-	NULL
BCAS1	8537	genome.wustl.edu	37	20	52675191	52675191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003657.2	-1	reviewed	p.Y23N	0.000	49	0%	96	45.8%	-	-	benign(0.071)	tolerated(0.4)	neutral(0.021)	NULL
APCDD1L	164284	genome.wustl.edu	37	20	57036548	57036548	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153360.1	-1	provisional	p.P268	0.045	12	0.000	9	0.556	-	-	-	-	-	NULL
GNAS	2778	genome.wustl.edu	37	20	57484249	57484250	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_080425.2	+1	reviewed	p.D832fs	0.750:0.654	-	-	-	-	-	-	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PSMA7	5688	genome.wustl.edu	37	20	60714168	60714168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002792.2	-1	reviewed	p.Y145C	1.000	50	0%	100	29%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
DIDO1	11083	genome.wustl.edu	37	20	61538656	61538656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033081.1	-1	reviewed	p.A406V	1.000	103	0%	92	52.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTS1	9510	genome.wustl.edu	37	21	28210371	28210371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006988.3	-1	reviewed	p.I811F	1.000	73	0%	81	51.9%	-	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_ADAM_spacer1
LTN1	26046	genome.wustl.edu	37	21	30325604	30325604	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015565.2	-1	validated	p.N1058	0.995	84	0%	127	36.2%	-	-	-	-	-	NULL
SCAF4	57466	genome.wustl.edu	37	21	33044257	33044259	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020706.2	-1	reviewed	p.Q966in_frame_del	0.841:0.842:0.872	-	-	-	-	-	-	-	-	-	NULL
IFNAR2	3455	genome.wustl.edu	37	21	34632954	34632954	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_207585.1	+1	reviewed	p.A254	0.000	118	0%	188	37.8%	-	-	-	-	-	NULL
DNAJC28	54943	genome.wustl.edu	37	21	34861098	34861098	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001040192.1	-1	validated	p.E201	0.997	163	0%	175	41.7%	-	-	-	-	-	HMMPfam_DUF1992
ITSN1	6453	genome.wustl.edu	37	21	35124151	35124151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003024.2	+1	reviewed	p.S188C	1.000	107	0%	123	45.5%	-	-	unknown(0)	tolerated(0.18)	-	superfamily_EF-hand
RUNX1	861	genome.wustl.edu	37	21	36252883	36252883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001754.4	-1	reviewed	p.D160G	1.000	28	0%	50	34%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_p53-like transcription factors,HMMPfam_Runt
TTC3	7267	genome.wustl.edu	37	21	38463679	38463679	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001001894.1	+1	validated	p.N189	0.808	60	0%	76	25%	-	-	-	-	-	NULL
BRWD1	54014	genome.wustl.edu	37	21	40590500	40590500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018963.3	-1	reviewed	p.W1157R	1.000	69	0%	97	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00297,superfamily_Bromodomain,superfamily_WD40 repeat-like
DSCAM	1826	genome.wustl.edu	37	21	41719705	41719705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001389.3	-1	validated	p.E368K	1.000	355	0%	424	41.3%	-	-	probably_damaging(0.972)	tolerated(0.2)	neutral(0.463)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MX1	4599	genome.wustl.edu	37	21	42813698	42813698	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001144925.1	+1	reviewed	p.D262	0.928	108	0%	101	41.6%	-	-	-	-	-	HMMPfam_Dynamin_M,HMMSmart_DYNc,superfamily_SSF52540
RIPK4	54101	genome.wustl.edu	37	21	43162104	43162104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020639.2	-1	reviewed	p.G417R	0.997	89	0%	63	41.3%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_ANK
ZNF295	49854	genome.wustl.edu	37	21	43412872	43412872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098402.1	-1	validated	p.R445C	1.000	58	0%	63	39.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF295	49854	genome.wustl.edu	37	21	43413650	43413650	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001098402.1	-1	validated	p.N185	0.000	164	0%	186	28%	-	-	-	-	-	NULL
RRP1	8568	genome.wustl.edu	37	21	45222302	45222302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000400387	+1	known	p.G386D	0.000	19	0%	20	50%	-	-	-	-	-	NULL
KRTAP10-2	386679	genome.wustl.edu	37	21	45970783	45970783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198693.2	-1	reviewed	p.C187S	0.017	148	0%	135	44.4%	-	-	unknown(0)	tolerated(0.14)	-	NULL
KRTAP10-12	386685	genome.wustl.edu	37	21	46117472	46117472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198699.1	+1	provisional	p.C119Y	0.855	331	0%	357	45.7%	-	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Keratin_B2
SUMO3	6612	genome.wustl.edu	37	21	46228960	46228960	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006936.2	-1	validated	e3+2	1.000	48	0%	34	47.1%	-	-	-	-	-	-
ITGB2	3689	genome.wustl.edu	37	21	46308618	46308618	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000211.3	-1	reviewed	p.D690	0.004	10	0.000	9	0.556	-	-	-	-	-	HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail
PCNT	5116	genome.wustl.edu	37	21	47767388	47767388	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006031.5	+1	reviewed	p.L332	0.028	79	0%	55	32.7%	-	-	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47836167	47836167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006031.5	+1	reviewed	p.D2112G	0.000	62	0%	50	50%	-	-	possibly_damaging(0.918)	tolerated(0.06)	deleterious(0.691)	NULL
CLTCL1	8218	genome.wustl.edu	37	22	19210259	19210259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007098.3	-1	reviewed	p.L789P	1.000	14	0%	19	42.1%	-	-	possibly_damaging(0.742)	tolerated(0.17)	neutral(0.331)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
GNB1L	54584	genome.wustl.edu	37	22	19799903	19799903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_053004.2	-1	validated	p.V108M	0.017	12	0%	13	61.5%	-	-	benign(0.291)	tolerated(0.18)	neutral(0.145)	superfamily_WD40 repeat-like
MED15	51586	genome.wustl.edu	37	22	20939481	20939481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001003891.1	+1	reviewed	p.D686	0.999	28	0%	21	38.1%	-	-	-	-	-	NULL
CABIN1	23523	genome.wustl.edu	37	22	24445681	24445681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012295.2	+1	reviewed	p.C219R	1.000	117	0%	159	39%	-	-	probably_damaging(0.986)	tolerated(0.31)	neutral(0.462)	NULL
SGSM1	129049	genome.wustl.edu	37	22	25315864	25315864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001039948.2	+1	validated	p.Y1088H	1.000	46	0%	59	40.7%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
CHEK2	11200	genome.wustl.edu	37	22	29085122	29085122	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001005735.1	-1	reviewed	e14+1	1.000	77	0%	108	41.7%	-	-	-	-	-	-
SFI1	9814	genome.wustl.edu	37	22	32009730	32009730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001007467.1	+1	validated	p.R962H	0.000	7	0.000	8	0.625	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
ISX	91464	genome.wustl.edu	37	22	35480478	35480478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001008494.1	+1	validated	p.N162D	0.000	42	0%	60	18.3%	-	-	probably_damaging(0.989)	tolerated(0.2)	deleterious(0.488)	NULL
CYTH4	27128	genome.wustl.edu	37	22	37707086	37707086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_013385.3	+1	reviewed	p.Y289C	1.000	68	0%	61	47.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CBY1	25776	genome.wustl.edu	37	22	39066985	39066985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001002880.1	+1	reviewed	p.W59R	1.000	103	0%	81	28.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40719131	40719131	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015088.2	+1	validated	p.P1686	0.797	52	0%	49	57.1%	-	-	-	-	-	NULL
TTLL1	25809	genome.wustl.edu	37	22	43442492	43442492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_012263.4	-1	validated	p.V356I	0.989	110	0%	113	46%	-	-	benign(0.003)	tolerated(0.55)	neutral(0.007)	HMMPfam_TTL
TTLL12	23170	genome.wustl.edu	37	22	43564129	43564129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015140.3	-1	validated	p.N607S	1.000	28	0%	17	29.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TTL
RIBC2	26150	genome.wustl.edu	37	22	45813793	45813793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_015653.3	+1	validated	p.W102R	0.001	120	0%	124	20.2%	-	-	benign(0.004)	tolerated(0.84)	neutral(0.001)	HMMPfam_RIB43A
SBF1	6305	genome.wustl.edu	37	22	50899625	50899625	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002972.2	-1	validated	p.L977Q	0.995	12	0.000	9	0.444	-	-	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	superfamily_PH domain-like
LOC100288980	100288980	genome.wustl.edu	37	22	51064862	51064863	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_002343794.1	+1	model	p.V17fs	0.002:0.000	-	-	-	-	-	-	-	-	-	NULL
ARSD	414	genome.wustl.edu	37	X	2825591	2825591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000358177	-1	known	p.A500V	0.861	19	0%	14	50%	-	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSD	414	genome.wustl.edu	37	X	2833628	2833628	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001669.2	-1	reviewed	p.G323	0.591	83	0%	92	38%	-	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
PNPLA4	8228	genome.wustl.edu	37	X	7889813	7889813	+	Missense_Mutation	SNP	C	C	T	rs186093844	by1000genomes	TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001142389.1	-1	reviewed	p.A118T	0.179	83	0%	69	20.3%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
CLCN4	1183	genome.wustl.edu	37	X	10176541	10176541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001830.3	+1	reviewed	p.A434T	1.000	294	0%	366	16.1%	-	-	possibly_damaging(0.894)	tolerated(0.25)	neutral(0.389)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
FRMPD4	9758	genome.wustl.edu	37	X	12720067	12720067	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_014728.3	+1	reviewed	p.L336	0.159	113	0%	142	33.1%	-	-	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
TLR7	51284	genome.wustl.edu	37	X	12904754	12904754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_016562.3	+1	reviewed	p.R376Q	0.112	262	0%	358	35.5%	-	-	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	superfamily_L domain-like
PIGA	5277	genome.wustl.edu	37	X	15339761	15339761	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002641.2	-1	reviewed	p.F441Y	1.000	201	0%	230	32.6%	-	-	possibly_damaging(0.623)	deleterious(0.01)	deleterious(0.623)	NULL
EIF1AX	1964	genome.wustl.edu	37	X	20156719	20156719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001412.3	-1	reviewed	p.R13H	1.000	100	0%	143	29.4%	-	-	unknown(0)	deleterious(0)	-	superfamily_Nucleic acid-binding proteins
KLHL34	257240	genome.wustl.edu	37	X	21674883	21674883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_153270.1	-1	provisional	p.Y342H	1.000	17	0%	11	36.4%	-	-	probably_damaging(0.992)	tolerated(0.15)	deleterious(0.689)	HMMSmart_Kelch,superfamily_Gal_oxid_central
SMS	6611	genome.wustl.edu	37	X	22003330	22003330	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004595.2	+1	reviewed	p.Y312N	1.000	120	0%	142	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CXorf58	254158	genome.wustl.edu	37	X	23953452	23953452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_152761.2	+1	validated	p.N232S	0.004	178	0%	206	30.6%	-	-	benign(0.009)	tolerated(0.75)	neutral(0.002)	NULL
GK	2710	genome.wustl.edu	37	X	30714254	30714254	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001128127.1	+1	reviewed	p.D216	1.000	28	0%	36	36.1%	-	-	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
DMD	1756	genome.wustl.edu	37	X	32382820	32382820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004006.2	-1	reviewed	p.Q1678P	1.000	123	0%	170	29.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Spectrin repeat
PRRG1	5638	genome.wustl.edu	37	X	37285112	37285112	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000950.2	+1	reviewed	p.K10	1.000	61	0%	84	40.5%	-	-	-	-	-	HMMSmart_SM00069
CXorf36	79742	genome.wustl.edu	37	X	45010961	45010961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_176819.3	-1	validated	p.L413P	1.000	111	0%	115	37.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC9A7	84679	genome.wustl.edu	37	X	46466436	46466436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032591.1	-1	reviewed	p.V710A	0.990	74	0%	50	34%	-	-	benign(0.085)	deleterious(0.04)	neutral(0.355)	NULL
RP2	6102	genome.wustl.edu	37	X	46713476	46713476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006915.2	+1	reviewed	p.I223T	0.946	112	0%	97	36.1%	-	-	benign(0.019)	deleterious(0.03)	neutral(0.365)	NULL
RBM10	8241	genome.wustl.edu	37	X	47041380	47041380	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005676.3	+1	reviewed	p.D575V	1.000	33	0%	22	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBC1D25	4943	genome.wustl.edu	37	X	48417411	48417411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002536.2	+1	validated	p.Q172R	1.000	85	0%	74	54.1%	-	-	benign(0.023)	tolerated(0.07)	neutral(0.320)	NULL
HDAC6	10013	genome.wustl.edu	37	X	48682667	48682667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_006044.2	+1	reviewed	p.A1181V	0.064	88	0%	103	45.6%	-	-	benign(0.003)	tolerated(1)	-	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
KCND1	3750	genome.wustl.edu	37	X	48826120	48826120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004979.4	-1	reviewed	p.V187I	1.000	15	0%	10	50%	-	-	possibly_damaging(0.868)	tolerated(0.14)	deleterious(0.587)	superfamily_Voltage-gated potassium channels
USP27X	389856	genome.wustl.edu	37	X	49645493	49645493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001145073.1	+1	provisional	p.C195R	1.000	9	0.000	15	0.333	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
GSPT2	23708	genome.wustl.edu	37	X	51487904	51487904	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_018094.4	+1	reviewed	p.T394	0.134	145	0.7%	117	12%	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_SSF52540
RIBC1	158787	genome.wustl.edu	37	X	53457516	53457516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001031745.1	+1	provisional	p.P279L	0.999	110	0%	71	36.6%	-	-	probably_damaging(0.99)	tolerated(0.25)	deleterious(0.478)	HMMPfam_RIB43A
WNK3	65267	genome.wustl.edu	37	X	54324763	54324763	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020922.4	-1	reviewed	p.L415	1.000	183	0%	250	47.2%	-	-	-	-	-	superfamily_Kinase_like
SNORA11	677799	genome.wustl.edu	37	X	54840883	54840883	+	RNA	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NR_002953.1	+1	validated	NULL	0.008	286	0%	261	44.1%	-	-	-	-	-	-
TRO	7216	genome.wustl.edu	37	X	54957201	54957201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000445561	+1	known	p.W672R	0.934	105	0%	99	45.5%	-	-	unknown(0)	deleterious(0)	-	NULL
ZXDA	7789	genome.wustl.edu	37	X	57935547	57935547	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007156.4	-1	reviewed	p.R436	0.995	80	0%	94	34%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PJA1	64219	genome.wustl.edu	37	X	68382065	68382065	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_145119.3	-1	reviewed	p.P339	0.000	59	0%	51	58.8%	-	-	-	-	-	NULL
DGAT2L6	347516	genome.wustl.edu	37	X	69424883	69424883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_198512.1	+1	provisional	p.A314V	1.000	127	0%	146	48.6%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_DAGAT
GDPD2	54857	genome.wustl.edu	37	X	69645915	69645915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_017711.3	+1	reviewed	p.L106P	0.852	41	0%	39	28.2%	-	-	possibly_damaging(0.677)	tolerated(0.18)	neutral(0.297)	NULL
SLC7A3	84889	genome.wustl.edu	37	X	70149843	70149843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001048164.2	-1	reviewed	p.P2L	0.789	69	0%	55	36.4%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
OGT	8473	genome.wustl.edu	37	X	70775052	70775052	+	Silent	SNP	T	T	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000455587	+1	known	p.L207R	1.000	66	0%	61	41%	-	-	-	-	-	HMMPfam_TPR_1,superfamily_TPR-like
CDX4	1046	genome.wustl.edu	37	X	72667229	72667229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005193.1	+1	provisional	p.A47V	0.008	40	0%	35	37.1%	-	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Caudal_act
MAGEE1	57692	genome.wustl.edu	37	X	75649700	75649700	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_020932.2	+1	reviewed	p.F459	0.079	41	0%	48	35.4%	-	-	-	-	-	NULL
MAGT1	84061	genome.wustl.edu	37	X	77096800	77096800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_032121.5	-1	reviewed	p.G314R	1.000	115	0%	138	49.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OST3_OST6
GLA	2717	genome.wustl.edu	37	X	100662699	100662699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_000169.2	-1	reviewed	p.S65G	1.000	175	0%	220	36.8%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_(Trans)glycosidases
H2BFWT	158983	genome.wustl.edu	37	X	103267757	103267757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001002916.3	-1	reviewed	p.T159M	1.000	39	0%	51	45.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_H2B,superfamily_Histone-fold
FRMPD3	84443	genome.wustl.edu	37	X	106846195	106846195	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	XM_042978.6	+1	model	p.C1675	1.000	67	0%	45	35.6%	-	-	-	-	-	NULL
IRS4	8471	genome.wustl.edu	37	X	107977087	107977087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003604.2	-1	reviewed	p.P830S	0.510	182	0%	300	38%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
IRS4	8471	genome.wustl.edu	37	X	107977759	107977759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003604.2	-1	reviewed	p.R606C	0.232	155	0%	231	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC6A14	11254	genome.wustl.edu	37	X	115582837	115582837	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_007231.3	+1	reviewed	e8+2	1.000	141	0%	239	50.6%	-	-	-	-	-	-
WDR44	54521	genome.wustl.edu	37	X	117526798	117526798	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000371848	+1	known	p.*30R	0.741	321	0%	404	34.2%	-	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122747905	122747905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001081550.1	-1	validated	p.R1483G	1.000	314	0%	472	32.6%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ACTRT1	139741	genome.wustl.edu	37	X	127185531	127185531	+	Silent	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_138289.3	-1	reviewed	p.L219	0.921	393	0.3%	544	45.8%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMARCA1	6594	genome.wustl.edu	37	X	128640105	128640105	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003069.3	-1	reviewed	p.L350	0.995	500	0%	680	30%	-	-	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC25A14	9016	genome.wustl.edu	37	X	129479167	129479167	+	Silent	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_003951.2	+1	reviewed	p.S29	0.977	193	0%	179	31.8%	-	-	-	-	-	NULL
FRMD7	90167	genome.wustl.edu	37	X	131211950	131211950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_194277.2	-1	reviewed	p.T699A	0.000	141	0%	184	29.9%	-	-	benign(0.001)	tolerated(0.77)	neutral(0.001)	NULL
FAM127B	26071	genome.wustl.edu	37	X	134186016	134186016	+	Silent	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001078172.1	-1	validated	p.P41	0.990	40	0%	64	34.4%	-	-	-	-	-	NULL
CT45A5	441521	genome.wustl.edu	37	X	134948047	134948047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001007551.3	-1	reviewed	p.P93H	0.016	758	0%	850	33.1%	-	-	possibly_damaging(0.834)	deleterious(0.01)	deleterious(0.724)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135790898	135790898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_004840.2	-1	reviewed	p.G287R	1.000	82	0%	116	38.8%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RBMX	27316	genome.wustl.edu	37	X	135956459	135956459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_002139.3	-1	reviewed	p.D340N	1.000	220	0%	256	42.2%	-	-	possibly_damaging(0.93)	deleterious(0.01)	deleterious(0.782)	NULL
MIR513C	100302114	genome.wustl.edu	37	X	146271228	146271228	+	RNA	SNP	A	A	G	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	ENST00000401352	-1	known	NULL	0.069	149	0%	136	48.5%	-	-	-	-	-	-
FATE1	89885	genome.wustl.edu	37	X	150891127	150891127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_033085.2	+1	reviewed	p.A150T	0.013	62	0%	65	35.4%	-	-	possibly_damaging(0.809)	tolerated(0.48)	neutral(0.315)	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159038	152159038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_001103150.1	-1	validated	p.V369M	0.000	86	0%	91	47.3%	-	-	possibly_damaging(0.795)	tolerated(0.11)	deleterious(0.570)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153219734	153219734	+	Silent	SNP	G	G	A	novel		TCGA-AP-A054-01A-11W-A062-09	TCGA-AP-A054-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d94e1a68-8691-49a1-a2ad-41b362583403	e5e5488a-f5e8-488b-a1b1-0a2d2cca126b	NM_005334.2	-1	reviewed	p.S1372	0.002	8	0.000	9	0.444	-	-	-	-	-	NULL
