Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ACAP3	116983	genome.wustl.edu	37	1	1239517	1239517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000354980	-1	known	p.P34Q	0.025	97	0%	43	55.8%	0	-	unknown(0)	-	-	NULL
LRRC47	57470	genome.wustl.edu	37	1	3712530	3712530	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020710.2	-1	validated	p.E171*	0.146	19	0.000	9	0.556	7	28.5%	-	-	-	superfamily_SSF52047
NPHP4	261734	genome.wustl.edu	37	1	5940195	5940195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015102.2	-1	reviewed	p.L864F	0.928	50	0%	38	52.6%	2	0%	possibly_damaging(0.775)	tolerated(0.44)	neutral(0.301)	NULL
NPHP4	261734	genome.wustl.edu	37	1	6012820	6012820	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015102.2	-1	reviewed	p.P250	0.960	20	0%	14	50%	0	-	-	-	-	NULL
KLHL21	9903	genome.wustl.edu	37	1	6653508	6653508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014851.2	-1	provisional	p.R571C	0.068	17	0%	13	61.5%	0	-	unknown(0)	-	-	NULL
UBE4B	10277	genome.wustl.edu	37	1	10166441	10166441	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001105562.1	+1	reviewed	p.P332	1.000	48	0%	21	38.1%	0	-	-	-	-	NULL
MTOR	2475	genome.wustl.edu	37	1	11272880	11272880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004958.3	-1	reviewed	p.A1124V	1.000	87	0%	81	48.1%	0	-	possibly_damaging(0.49)	tolerated(0.39)	neutral(0.179)	superfamily_ARM-type_fold
PRDM2	7799	genome.wustl.edu	37	1	14108710	14108710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012231.4	+1	reviewed	p.A1474T	0.982	56	1.8%	37	43.2%	1	0%	possibly_damaging(0.948)	tolerated(0.11)	deleterious(0.663)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPEN	23013	genome.wustl.edu	37	1	16255366	16255366	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015001.2	+1	reviewed	p.C877	0.994	92	0%	76	40.8%	1	100%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16262604	16262604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015001.2	+1	reviewed	p.T3290I	1.000	34	0%	20	55%	0	-	unknown(0)	deleterious(0)	-	NULL
UBXN10	127733	genome.wustl.edu	37	1	20517541	20517541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152376.3	+1	provisional	p.S163T	0.011	65	0%	42	66.7%	1	0%	benign(0.318)	tolerated(0.15)	neutral(0.341)	NULL
KIF17	57576	genome.wustl.edu	37	1	21011458	21011458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020816.2	-1	validated	p.G692D	0.000	12	0%	18	44.4%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
HNRNPR	10236	genome.wustl.edu	37	1	23637174	23637174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001102398.1	-1	reviewed	p.R562C	1.000	118	0%	68	17.6%	18	11.1%	unknown(0)	deleterious(0)	-	NULL
UBXN11	91544	genome.wustl.edu	37	1	26629321	26629321	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_183008.2	-1	reviewed	p.S18	0.987	82	0%	50	52%	3	66.6%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27087910	27087911	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006015.4	+1	reviewed	p.D734fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
WDTC1	23038	genome.wustl.edu	37	1	27631607	27631607	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015023.3	+1	validated	p.Q586*	1.000	31	0%	27	59.3%	5	20%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SRSF4	6429	genome.wustl.edu	37	1	29486916	29486916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005626.4	-1	reviewed	p.R74Q	0.999	112	0%	52	48.1%	13	53.8%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	superfamily_SSF54928
PUM1	9698	genome.wustl.edu	37	1	31453000	31453000	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001020658.1	-1	reviewed	p.P421	1.000	35	0%	12	66.7%	1	100%	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39898235	39898235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_033044.2	+1	reviewed	p.A4229D	1.000	119	0%	96	46.9%	0	-	probably_damaging(0.988)	tolerated(0.63)	neutral(0.441)	HMMPfam_Spectrin,HMMSmart_SPEC
RLF	6018	genome.wustl.edu	37	1	40704614	40704614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012421.3	+1	validated	p.C1414R	1.000	129	0%	72	50%	3	33.3%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
RIMS3	9783	genome.wustl.edu	37	1	41101686	41101686	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014747.2	-1	validated	p.T87	0.511	26	0.038	8	0.500	0	-	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	41978661	41978661	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024503.3	-1	validated	p.A2077	0.738	10	0%	13	38.5%	5	20%	-	-	-	NULL
SZT2	23334	genome.wustl.edu	37	1	43897038	43897038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015284.2	+1	predicted	p.E774D	0.998	75	0%	56	60.7%	1	100%	possibly_damaging(0.787)	tolerated(0.54)	neutral(0.302)	NULL
B4GALT2	8704	genome.wustl.edu	37	1	44450678	44450678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001005417.1	+1	reviewed	p.G231C	1.000	13	0%	12	50%	45	51.1%	benign(0.257)	tolerated(0.18)	neutral(0.083)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
TMEM53	79639	genome.wustl.edu	37	1	45120360	45120360	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024587.2	-1	provisional	p.R235	1.000	41	0%	22	18.2%	18	0%	-	-	-	HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases
PLK3	1263	genome.wustl.edu	37	1	45266755	45266755	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004073.2	+1	validated	p.I122	0.994	47	0%	27	25.9%	4	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LDLRAD1	388633	genome.wustl.edu	37	1	54474768	54474768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001010978.2	-1	provisional	p.R169C	0.841	19	0%	15	33.3%	5	20%	possibly_damaging(0.511)	deleterious(0.01)	deleterious(0.577)	HMMSmart_SM00192,superfamily_LDL receptor-like module
ROR1	4919	genome.wustl.edu	37	1	64515521	64515521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005012.2	+1	validated	p.R108W	1.000	104	0%	68	45.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SSX2IP	117178	genome.wustl.edu	37	1	85130142	85130142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014021.3	-1	reviewed	p.R211C	1.000	430	0%	397	44.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ODF2L	57489	genome.wustl.edu	37	1	86818542	86818542	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020729.2	-1	validated	p.S602	0.684	434	0%	326	48.2%	22	50%	-	-	-	NULL
LMO4	8543	genome.wustl.edu	37	1	87797927	87797927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006769.3	+1	reviewed	p.Y77H	1.000	40	0%	35	42.9%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
DENND2D	79961	genome.wustl.edu	37	1	111739820	111739820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024901.3	-1	provisional	p.G161D	1.000	30	0%	26	53.8%	6	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DENN,HMMSmart_SM00799
MAGI3	260425	genome.wustl.edu	37	1	114225544	114225544	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001142782.1	+1	validated	p.S1118	0.998	75	0%	74	47.3%	0	-	-	-	-	superfamily_PDZ
TRIM33	51592	genome.wustl.edu	37	1	114970387	114970387	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015906.3	-1	reviewed	p.L429	1.000	203	0%	83	39.8%	0	-	-	-	-	HMMSmart_SM00502
ANKRD35	148741	genome.wustl.edu	37	1	145558841	145558841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_144698.3	+1	validated	p.R154C	0.995	24	0%	23	60.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CHD1L	9557	genome.wustl.edu	37	1	146724358	146724358	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004284.3	+1	validated	p.G70*	1.000	127	0%	181	29.3%	1	100%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPIAL4A	164022	genome.wustl.edu	37	1	147955222	147955222	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_178230.1	-1	provisional	p.T41	0.979	194	0%	123	35.8%	2	0%	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
ARNT	405	genome.wustl.edu	37	1	150786552	150786552	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001668.2	-1	reviewed	e20+1	1.000	82	0%	92	71.7%	2	100%	-	-	-	-
PGLYRP4	57115	genome.wustl.edu	37	1	153318659	153318659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020393.2	-1	validated	p.S20P	0.456	346	0%	347	64%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
SLC27A3	11000	genome.wustl.edu	37	1	153752369	153752369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024330.1	+1	provisional	p.P695L	0.999	51	0%	39	33.3%	92	28.2%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_Acetyl-CoA synthetase-like
SEMA4A	64218	genome.wustl.edu	37	1	156145423	156145423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_022367.2	+1	provisional	p.R557W	0.162	21	0%	31	29%	8	50%	benign(0.008)	deleterious(0.02)	neutral(0.383)	NULL
TTC24	164118	genome.wustl.edu	37	1	156555612	156555612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001105669.2	+1	provisional	p.I242V	0.000	71	0%	88	28.4%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
F5	2153	genome.wustl.edu	37	1	169510414	169510415	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000130.4	-1	reviewed	p.P1305fs	0.097:0.096	-	-	-	-	-	-	-	-	-	HMMPfam_LSPR
DNM3	26052	genome.wustl.edu	37	1	172002294	172002294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015569.3	+1	validated	p.K246N	1.000	121	0%	115	16.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Dynamin_M,superfamily_SSF52540
PAPPA2	60676	genome.wustl.edu	37	1	176525805	176525805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020318.2	+1	validated	p.A116V	0.011	35	0%	26	57.7%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
ABL2	27	genome.wustl.edu	37	1	179086602	179086602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007314.3	-1	reviewed	p.V425M	1.000	151	0%	162	62.3%	0	-	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NMNAT2	23057	genome.wustl.edu	37	1	183253868	183253868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015039.2	-1	reviewed	p.P169L	0.911	21	0%	24	75%	0	-	benign(0.026)	tolerated(0.16)	neutral(0.060)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
IVNS1ABP	10625	genome.wustl.edu	37	1	185267291	185267291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006469.4	-1	validated	p.A602V	0.660	227	0%	227	62.1%	233	60.5%	benign(0.004)	tolerated(0.48)	neutral(0.011)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
NAV1	89796	genome.wustl.edu	37	1	201755587	201755587	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000430015	+1	known	p.G517*	1.000	88	0%	99	59.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GPR37L1	9283	genome.wustl.edu	37	1	202096939	202096939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004767.3	+1	validated	p.S234N	1.000	69	0%	50	74%	0	-	probably_damaging(0.975)	tolerated(0.58)	neutral(0.422)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZC3H11A	9877	genome.wustl.edu	37	1	203798758	203798758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014827.4	+1	validated	p.A160T	1.000	175	0%	169	38.5%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC642587	642587	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001104548.1	+1	validated	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PTPN14	5784	genome.wustl.edu	37	1	214557278	214557278	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005401.4	-1	reviewed	p.R640	1.000	29	0%	21	47.6%	2	0%	-	-	-	NULL
ACTA1	58	genome.wustl.edu	37	1	229568514	229568514	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001100.3	-1	reviewed	p.W81*	1.000	53	0%	23	73.9%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
C1orf100	200159	genome.wustl.edu	37	1	244528040	244528040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001012970.1	+1	predicted	p.R13L	0.014	215	0%	205	38%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
OR13G1	441933	genome.wustl.edu	37	1	247836183	247836183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001005487.1	-1	provisional	p.T54M	0.006	54	0%	84	32.1%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M3	127062	genome.wustl.edu	37	1	248366550	248366550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001004689.1	+1	provisional	p.L61F	0.952	502	0%	411	31.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C2orf16	84226	genome.wustl.edu	37	2	27804449	27804449	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032266.3	+1	validated	p.H1670Q	0.000	97	1%	54	50%	0	-	unknown(0)	tolerated(0.06)	-	NULL
CLIP4	79745	genome.wustl.edu	37	2	29379228	29379228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024692.4	+1	validated	p.T392A	0.991	195	0%	195	39.5%	0	-	benign(0.004)	tolerated(0.36)	neutral(0.020)	NULL
EPAS1	2034	genome.wustl.edu	37	2	46607833	46607833	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001430.4	+1	reviewed	p.P674	0.423	21	0%	16	43.8%	4	25%	-	-	-	NULL
MSH6	2956	genome.wustl.edu	37	2	48033455	48033457	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000179.2	+1	reviewed	p.E1254in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000205011	0	genome.wustl.edu	37	2	48756717	48756717	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000378305	+1	known	p.S4	0.000	156	0.6%	87	40.2%	0	-	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61447508	61447508	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014709.3	-1	validated	p.Q2662*	1.000	106	0%	52	44.2%	1	0%	-	-	-	NULL
GFPT1	2673	genome.wustl.edu	37	2	69590701	69590701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002056.2	-1	reviewed	p.P109T	1.000	288	0%	153	51.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATase_2,superfamily_SSF56235
ADD2	119	genome.wustl.edu	37	2	70918040	70918040	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001617.3	-1	reviewed	p.L243fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
LRRTM1	347730	genome.wustl.edu	37	2	80530487	80530487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_178839.4	-1	validated	p.A153V	1.000	79	0%	43	60.5%	3	66.6%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
TCF7L1	83439	genome.wustl.edu	37	2	85536299	85536299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_031283.1	+1	provisional	p.A494V	1.000	30	0%	17	52.9%	7	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
ADRA2B	151	genome.wustl.edu	37	2	96780854	96780854	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000409345	-1	known	p.G345	0.000	27	0%	20	60%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EIF5B	9669	genome.wustl.edu	37	2	99977774	99977775	+	In_Frame_Ins	INS	-	-	TGA	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015904.3	+1	reviewed	p.141in_frame_insD	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
IL1R1	3554	genome.wustl.edu	37	2	102789185	102789185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000877.2	+1	reviewed	p.I293T	0.007	270	0%	229	48.5%	1	0%	possibly_damaging(0.92)	tolerated(1)	neutral(0.371)	HMMSmart_SM00409,superfamily_Immunoglobulin
IL1RL2	8808	genome.wustl.edu	37	2	102849439	102849439	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003854.2	+1	reviewed	p.D384	0.997	113	0%	69	39.1%	0	-	-	-	-	HMMSmart_TIR,superfamily_TIR
NCK2	8440	genome.wustl.edu	37	2	106509519	106509519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001004720.2	+1	reviewed	p.I344V	1.000	31	0%	27	59.3%	29	37.9%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
RGPD3	653489	genome.wustl.edu	37	2	107069227	107069227	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001144013.1	-1	validated	p.R187	1.000	381	0%	299	20.7%	0	-	-	-	-	superfamily_SSF48452
CNTNAP5	129684	genome.wustl.edu	37	2	125405392	125405392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_130773.2	+1	reviewed	p.G644D	0.040	42	0%	24	50%	0	-	possibly_damaging(0.761)	deleterious(0.01)	deleterious(0.688)	superfamily_ConA_like_lec_gl
FAM123C	205147	genome.wustl.edu	37	2	131521789	131521789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001105193.1	+1	validated	p.D715G	0.000	10	0.000	7	0.571	0	-	benign(0.195)	tolerated(0.23)	neutral(0.060)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145156851	145156851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014795.3	-1	reviewed	p.L635I	1.000	163	0%	109	48.6%	0	-	probably_damaging(0.958)	tolerated(0.49)	neutral(0.412)	NULL
RIF1	55183	genome.wustl.edu	37	2	152324641	152324643	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018151.4	+1	reviewed	p.P2244in_frame_del	0.984:0.977:0.994	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
GCA	25801	genome.wustl.edu	37	2	163212991	163212991	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000414723	+1	known	p.I15T	1.000	89	0%	63	31.7%	15	40%	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
METTL8	79828	genome.wustl.edu	37	2	172216953	172216953	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000375258	-1	known	p.R72*	0.714	381	0.3%	260	45%	1	100%	-	-	-	NULL
ITGA6	3655	genome.wustl.edu	37	2	173339761	173339761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001079818.1	+1	reviewed	p.V364A	0.992	193	0%	142	35.9%	2	50%	possibly_damaging(0.5)	tolerated(0.43)	neutral(0.181)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
CDCA7	83879	genome.wustl.edu	37	2	174231979	174231979	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_031942.4	+1	reviewed	p.Y429	1.000	329	0.3%	188	43.1%	22	45.4%	-	-	-	HMMPfam_zf-4CXXC_R1
HOXD13	3239	genome.wustl.edu	37	2	176958191	176958191	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000523.3	+1	reviewed	p.S191	1.000	18	0%	11	54.5%	0	-	-	-	-	NULL
UBE2E3	10477	genome.wustl.edu	37	2	181846877	181846877	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006357.2	+1	reviewed	p.E37fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ANKAR	150709	genome.wustl.edu	37	2	190584302	190584302	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_144708.3	+1	validated	p.T672	0.997	87	0%	57	50.9%	1	100%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ANKAR	150709	genome.wustl.edu	37	2	190584401	190584401	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_144708.3	+1	validated	p.V705	0.001	181	0%	119	44.5%	0	-	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
SGOL2	151246	genome.wustl.edu	37	2	201438257	201438259	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152524.5	+1	validated	p.E1064in_frame_del	0.000:0.035:0.317	-	-	-	-	-	-	-	-	-	NULL
FZD7	8324	genome.wustl.edu	37	2	202900162	202900162	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003507.1	+1	reviewed	p.C264	1.000	18	0.000	8	0.750	0	-	-	-	-	HMMPfam_Frizzled
IKZF2	22807	genome.wustl.edu	37	2	214012391	214012391	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000442445	-1	known	p.V66	0.064	173	0%	98	43.9%	0	-	-	-	-	NULL
DNAJB2	3300	genome.wustl.edu	37	2	220145301	220145301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006736.5	+1	validated	p.Y23H	1.000	87	0%	45	24.4%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
GMPPA	29926	genome.wustl.edu	37	2	220367132	220367132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_013335.2	+1	reviewed	p.G153D	1.000	37	0%	30	50%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NTP_transferase,superfamily_Nucleotide-diphospho-sugar transferases
COL6A3	1293	genome.wustl.edu	37	2	238296329	238296329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004369.3	-1	reviewed	p.P403L	1.000	49	0%	33	45.5%	0	-	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
SCLY	51540	genome.wustl.edu	37	2	238990350	238990350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016510.4	+1	validated	p.A162V	0.800	73	0%	58	46.6%	3	0%	benign(0.106)	tolerated(0.07)	neutral(0.327)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
HDLBP	3069	genome.wustl.edu	37	2	242186199	242186199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005336.3	-1	validated	p.R640W	0.091	142	0%	75	45.3%	23	52.1%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
GAL3ST2	64090	genome.wustl.edu	37	2	242738570	242738570	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_022134.2	+1	reviewed	e2+1	0.761	35	0%	19	57.9%	0	-	-	-	-	-
SETMAR	6419	genome.wustl.edu	37	3	4358103	4358103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006515.3	+1	validated	p.S410T	0.683	14	0%	10	40%	10	30%	unknown(0)	tolerated(0.61)	-	NULL
SETMAR	6419	genome.wustl.edu	37	3	4358392	4358392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006515.3	+1	validated	p.R506Q	0.811	11	0%	18	50%	14	35.7%	unknown(0)	tolerated(0.49)	-	HMMPfam_Transposase_1
CAND2	23066	genome.wustl.edu	37	3	12858245	12858245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012298.2	+1	validated	p.R512Q	0.975	9	0.000	6	0.667	1	100%	benign(0.002)	tolerated(0.3)	neutral(0.029)	superfamily_ARM-type_fold
NUP210	23225	genome.wustl.edu	37	3	13417095	13417095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024923.2	-1	reviewed	p.E447G	1.000	107	0%	55	34.5%	2	0%	possibly_damaging(0.822)	deleterious(0.04)	deleterious(0.660)	superfamily_Invasin/intimin cell-adhesion fragments
HDAC11	79885	genome.wustl.edu	37	3	13545725	13545725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024827.3	+1	reviewed	p.D261N	0.996	42	0%	33	51.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
FBXL2	25827	genome.wustl.edu	37	3	33406174	33406174	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012157.3	+1	reviewed	p.L85	0.996	162	0%	71	36.6%	2	100%	-	-	-	superfamily_SSF52047
EPM2AIP1	9852	genome.wustl.edu	37	3	37034346	37034346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014805.3	-1	reviewed	p.A75T	1.000	13	0%	20	55%	0	-	possibly_damaging(0.597)	tolerated(0.56)	neutral(0.213)	NULL
SCN10A	6336	genome.wustl.edu	37	3	38805047	38805047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006514.2	-1	validated	p.L214M	1.000	209	0%	115	47%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Ion_trans,superfamily_SSF81324
CTNNB1	1499	genome.wustl.edu	37	3	41266112	41266112	+	Missense_Mutation	SNP	T	T	C	rs121913228	byCluster	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001098209.1	+1	reviewed	p.S37P	1.000	83	0%	44	47.7%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47049339	47049339	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000443829	+1	known	p.W852*	1.000	73	0%	57	33.3%	192	39%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CDHR4	389118	genome.wustl.edu	37	3	49831150	49831150	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001007540.2	-1	provisional	p.V497L	0.007	104	0%	75	52%	0	-	benign(0.002)	tolerated(0.62)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CAMKV	79012	genome.wustl.edu	37	3	49896986	49896986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024046.3	-1	validated	p.R424K	1.000	92	0%	55	58.2%	0	-	benign(0.032)	tolerated(0.23)	neutral(0.043)	NULL
C3orf45	132228	genome.wustl.edu	37	3	50324118	50324118	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_153215.1	+1	predicted	p.R62	0.001	45	0%	26	42.3%	0	-	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52406259	52406259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015512.4	+1	validated	p.P2228L	0.998	58	0%	37	48.6%	9	44.4%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
STAB1	23166	genome.wustl.edu	37	3	52551980	52551980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015136.2	+1	reviewed	p.T1574	0.001	6	0.000	7	0.857	5	0%	-	-	-	superfamily_FAS1 domain,HMMSmart_SM00181
TKT	7086	genome.wustl.edu	37	3	53260877	53260877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001064.2	-1	validated	p.V531M	0.953	175	0%	102	58.8%	1193	45.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
LRTM1	57408	genome.wustl.edu	37	3	54958794	54958794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020678.2	-1	provisional	p.A152	0.026	111	0%	59	52.5%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
WNT5A	7474	genome.wustl.edu	37	3	55513504	55513505	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003392.3	-1	reviewed	p.Q77fs	1.000:0.997	-	-	-	-	-	-	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
FLNB	2317	genome.wustl.edu	37	3	58089742	58089742	+	Missense_Mutation	SNP	G	G	A	rs147001986	by1000genomes	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001457.3	+1	reviewed	p.E514K	1.000	71	0%	36	36.1%	0	-	possibly_damaging(0.785)	tolerated(0.19)	neutral(0.343)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58131651	58131651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001457.3	+1	reviewed	p.S1810N	1.000	106	0%	75	20%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
EPHA6	285220	genome.wustl.edu	37	3	97454795	97454795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001080448.2	+1	provisional	p.Y987	1.000	88	0%	54	50%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
OR5H2	79310	genome.wustl.edu	37	3	98002244	98002244	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001005482.1	+1	provisional	p.L171	0.236	200	0%	167	44.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MORC1	27136	genome.wustl.edu	37	3	108724112	108724112	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014429.3	-1	reviewed	p.H606	0.006	123	0%	98	48%	0	-	-	-	-	NULL
SIDT1	54847	genome.wustl.edu	37	3	113286489	113286489	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017699.2	+1	validated	p.V149	0.012	72	0%	27	40.7%	0	-	-	-	-	NULL
IQCB1	9657	genome.wustl.edu	37	3	121491423	121491423	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001023570.2	-1	reviewed	p.T516	1.000	126	0%	79	11.4%	14	42.8%	-	-	-	NULL
DTX3L	151636	genome.wustl.edu	37	3	122287740	122287740	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_138287.3	+1	validated	p.Q268	0.000	30	0%	36	47.2%	0	-	-	-	-	NULL
AMOTL2	51421	genome.wustl.edu	37	3	134077439	134077439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016201.2	-1	reviewed	p.P743S	0.002	26	0%	12	41.7%	3	0%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
PRR23B	389151	genome.wustl.edu	37	3	138739102	138739102	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001013650.2	-1	validated	p.D134	0.001	27	0%	18	50%	0	-	-	-	-	HMMPfam_DUF2476
MRPS22	56945	genome.wustl.edu	37	3	139069829	139069829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020191.2	+1	reviewed	p.S220N	0.005	248	0.4%	184	46.7%	32	40.6%	benign(0.174)	tolerated(0.19)	neutral(0.066)	HMMPfam_MRP-S22
NAALADL2	254827	genome.wustl.edu	37	3	175184883	175184884	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_207015.2	+1	validated	p.K482fs	0.838:0.871	-	-	-	-	-	-	-	-	-	superfamily_Zn-dependent exopeptidases
PIK3CA	5290	genome.wustl.edu	37	3	178921548	178921548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006218.2	+1	reviewed	p.V344M	1.000	87	0%	76	48.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
AP2M1	1173	genome.wustl.edu	37	3	183900721	183900721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000442686	+1	known	p.P103L	0.000	11	0%	16	50%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ADIPOQ	9370	genome.wustl.edu	37	3	186571010	186571010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004797.3	+1	reviewed	p.R55C	0.997	47	0%	25	44%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Collagen
MB21D2	151963	genome.wustl.edu	37	3	192517283	192517283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_178496.3	-1	validated	p.P123Q	1.000	44	0%	30	36.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM44	93109	genome.wustl.edu	37	3	194337843	194337844	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CG	CG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_138399.4	-1	validated	p.A256fs	0.000:0.043	-	-	-	-	-	-	-	-	-	NULL
PCYT1A	5130	genome.wustl.edu	37	3	195997385	195997385	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005017.2	-1	provisional	p.S6	0.999	259	0%	135	36.3%	1	100%	-	-	-	NULL
BDH1	622	genome.wustl.edu	37	3	197239164	197239164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004051.4	-1	reviewed	p.K212E	1.000	10	0%	12	41.7%	23	47.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd
ENSG00000252150	0	genome.wustl.edu	37	4	461370	461371	+	RNA	DEL	AC	AC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000516341	-1	novel	NULL	0.296:0.297	-	-	-	-	-	-	-	-	-	-
HTRA3	94031	genome.wustl.edu	37	4	8288312	8288312	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_053044.2	+1	provisional	p.V170	1.000	32	0%	23	26.1%	5	0%	-	-	-	HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases
N4BP2	55728	genome.wustl.edu	37	4	40146335	40146335	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000513269	+1	known	p.A1316T	1.000	180	0%	129	52.7%	1	100%	-	-	-	NULL
NSUN7	79730	genome.wustl.edu	37	4	40810680	40810680	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024677.4	+1	validated	p.P627	0.000	121	0%	97	20.6%	3	33.3%	-	-	-	NULL
DCAF4L1	285429	genome.wustl.edu	37	4	41984803	41984803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001029955.3	+1	validated	p.V332M	1.000	50	0%	36	47.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CORIN	10699	genome.wustl.edu	37	4	47605654	47605654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006587.2	-1	reviewed	p.L858F	0.807	102	0%	74	37.8%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
NFXL1	152518	genome.wustl.edu	37	4	47912920	47912920	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152995.4	-1	validated	p.S109	0.933	358	0.3%	296	48%	0	-	-	-	-	NULL
CEP135	9662	genome.wustl.edu	37	4	56877964	56877964	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_025009.3	+1	validated	e20-2	1.000	61	0%	60	55%	0	-	-	-	-	-
EPHA5	2044	genome.wustl.edu	37	4	66201747	66201747	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004439.5	-1	reviewed	p.R919*	1.000	194	0%	127	40.9%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
UGT2B4	7363	genome.wustl.edu	37	4	70346510	70346511	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021139.2	-1	validated	p.R476fs	0.423:0.453	-	-	-	-	-	-	-	-	-	HMMPfam_UDPGT
PPEF2	5470	genome.wustl.edu	37	4	76793279	76793279	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006239.2	-1	reviewed	p.G516	1.000	91	0%	75	40%	0	-	-	-	-	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
CNOT6L	246175	genome.wustl.edu	37	4	78740203	78740204	+	Frame_Shift_Ins	INS	-	-	ACACACAC	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000515506	-1	known	p.G6fs	0.001:0.003	-	-	-	-	-	-	-	-	-	NULL
HPSE	10855	genome.wustl.edu	37	4	84255778	84255778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001098540.1	-1	validated	p.S53N	1.000	15	0%	10	50%	0	-	benign(0.392)	tolerated(0.33)	neutral(0.149)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85699713	85699713	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014991.4	-1	reviewed	p.H1487	0.851	166	0%	115	59.1%	0	-	-	-	-	NULL
GPRIN3	285513	genome.wustl.edu	37	4	90170303	90170303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_198281.2	-1	validated	p.A320V	0.977	37	0%	27	55.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119944626	119944626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_133477.2	+1	validated	p.E49D	0.806	143	0%	83	24.1%	0	-	possibly_damaging(0.78)	deleterious(0.03)	deleterious(0.656)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SCLT1	132320	genome.wustl.edu	37	4	129857894	129857894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_144643.2	-1	validated	p.A582V	0.008	406	0%	420	45.2%	5	40%	benign(0)	tolerated(1)	-	NULL
ELMOD2	255520	genome.wustl.edu	37	4	141458656	141458656	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_153702.2	+1	validated	p.Y120	0.999	295	0%	223	45.3%	1	100%	-	-	-	HMMPfam_ELMO_CED12
POU4F2	5458	genome.wustl.edu	37	4	147561144	147561144	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004575.2	+1	validated	p.P138	1.000	162	0%	104	54.8%	0	-	-	-	-	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561858	147561858	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004575.2	+1	validated	p.A376	1.000	43	0%	27	55.6%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
FGA	2243	genome.wustl.edu	37	4	155507455	155507455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000508.3	-1	reviewed	p.E376K	0.296	90	0%	67	35.8%	0	-	possibly_damaging(0.875)	tolerated(0.6)	neutral(0.345)	HMMPfam_Fib_alpha
FAM198B	51313	genome.wustl.edu	37	4	159048589	159048589	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001031700.2	-1	validated	p.H518	0.979	358	0%	295	47.8%	1	100%	-	-	-	NULL
ODZ3	55714	genome.wustl.edu	37	4	183635263	183635263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001080477.1	+1	provisional	p.S749G	1.000	100	0%	102	44.1%	0	-	benign(0)	tolerated(1)	-	HMMSmart_EGF,superfamily_ConA_like_lec_gl,superfamily_SSF57196
IRF2	3660	genome.wustl.edu	37	4	185320225	185320225	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002199.3	-1	reviewed	p.Q180*	1.000	85	0%	55	16.4%	4	0%	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5462895	5462895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015325.1	+1	validated	p.G1150C	0.300	192	0%	148	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UGT3A1	133688	genome.wustl.edu	37	5	35954470	35954470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152404.3	-1	validated	p.T469M	0.000	43	0%	46	10.9%	0	-	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	HMMPfam_UDPGT
RAB3C	115827	genome.wustl.edu	37	5	57913548	57913548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_138453.2	+1	provisional	p.I35V	1.000	77	0%	53	15.1%	0	-	benign(0.406)	deleterious(0)	deleterious(0.575)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
TMEM161B	153396	genome.wustl.edu	37	5	87492168	87492168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_153354.3	-1	provisional	p.A442S	1.000	175	0%	147	41.5%	2	50%	possibly_damaging(0.942)	tolerated(0.39)	neutral(0.403)	HMMPfam_Tmemb_161AB
ANKRD32	84250	genome.wustl.edu	37	5	94022372	94022372	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032290.3	+1	validated	p.C690	0.998	265	0%	167	49.1%	2	100%	-	-	-	NULL
EPB41L4A-AS1	114915	genome.wustl.edu	37	5	111496622	111496622	+	RNA	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NR_015370.2	+1	validated	NULL	0.000	96	0%	53	49.1%	37	27%	-	-	-	-
PRRC1	133619	genome.wustl.edu	37	5	126883724	126883724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000442138	+1	known	p.F413L	0.000	134	0%	72	47.2%	0	-	benign(0.007)	-	-	NULL
PHF15	23338	genome.wustl.edu	37	5	133914449	133914451	+	In_Frame_Del	DEL	ACC	ACC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	ACC	ACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015288.4	+1	provisional	p.P609in_frame_del	0.991:0.985:0.973	-	-	-	-	-	-	-	-	-	NULL
PKD2L2	27039	genome.wustl.edu	37	5	137230127	137230127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014386.2	+1	validated	p.R118H	0.996	223	0%	130	40.8%	0	-	benign(0.016)	tolerated(0.47)	neutral(0.011)	HMMPfam_PKD_channel
KIF20A	10112	genome.wustl.edu	37	5	137518143	137518143	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005733.2	+1	validated	p.T169	0.197	84	0%	59	16.9%	2	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
PCDHA3	56145	genome.wustl.edu	37	5	140182637	140182637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018906.2	+1	reviewed	p.R619C	0.959	24	0%	17	82.4%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140262036	140262036	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018904.2	+1	reviewed	p.P61	0.907	44	0%	22	40.9%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263782	140263782	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018904.2	+1	reviewed	p.P643	0.000	12	0.000	7	0.571	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB2	56133	genome.wustl.edu	37	5	140474898	140474898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018936.2	+1	reviewed	p.S175N	0.902	12	0%	18	55.6%	0	-	benign(0.033)	tolerated(0.15)	neutral(0.242)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559299	140559299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_019120.2	+1	reviewed	p.V562M	0.977	30	0%	16	31.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140573566	140573566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018930.3	+1	reviewed	p.G481S	0.581	48	0%	38	44.7%	0	-	possibly_damaging(0.815)	deleterious(0.01)	deleterious(0.713)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140589922	140589922	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018932.3	+1	reviewed	p.G481	0.016	39	0%	24	41.7%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA2	56113	genome.wustl.edu	37	5	140720744	140720744	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018915.2	+1	reviewed	p.Q736*	0.022	84	1.2%	47	61.7%	0	-	-	-	-	NULL
PCDHGA3	56112	genome.wustl.edu	37	5	140725043	140725045	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018916.3	+1	reviewed	p.N484in_frame_del	0.822:0.573:0.161	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730580	140730580	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018922.2	+1	reviewed	p.N251	0.059	64	0%	44	54.5%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
CSF1R	1436	genome.wustl.edu	37	5	149441112	149441112	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005211.3	-1	reviewed	p.T600	0.242	176	0%	136	41.2%	1	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
SLC36A3	285641	genome.wustl.edu	37	5	150657074	150657074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001145017.1	-1	validated	p.K472N	1.000	72	0%	36	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150931044	150931044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001447.2	-1	reviewed	p.R1427H	0.002	106	0%	63	42.9%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GALNT10	55568	genome.wustl.edu	37	5	153709145	153709145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_198321.3	+1	reviewed	p.R139C	1.000	80	0%	53	60.4%	5	80%	benign(0.139)	tolerated(0.05)	neutral(0.357)	superfamily_Nucleotide-diphospho-sugar transferases
LARP1	23367	genome.wustl.edu	37	5	154173191	154173191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015315.3	+1	validated	p.M182T	1.000	57	0%	51	49%	1	100%	benign(0.158)	tolerated(0.41)	neutral(0.029)	NULL
GABRA1	2554	genome.wustl.edu	37	5	161322682	161322682	+	Silent	SNP	T	T	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000806.5	+1	reviewed	p.T289	1.000	179	0%	121	40.5%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
LCP2	3937	genome.wustl.edu	37	5	169714976	169714976	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005565.3	-1	reviewed	p.V62	0.983	182	0%	93	48.4%	0	-	-	-	-	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
DRD1	1812	genome.wustl.edu	37	5	174870093	174870093	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000794.3	-1	reviewed	p.L4	0.902	19	0%	17	58.8%	0	-	-	-	-	NULL
CDHR2	54825	genome.wustl.edu	37	5	176003008	176003008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017675.4	+1	reviewed	p.V339A	1.000	46	0%	25	44%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
HIVEP1	3096	genome.wustl.edu	37	6	12121942	12121942	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002114.2	+1	validated	p.H638	0.000	38	0%	34	55.9%	0	-	-	-	-	NULL
NUP153	9972	genome.wustl.edu	37	6	17629253	17629253	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005124.2	-1	reviewed	p.S1059	0.011	97	0%	84	36.9%	0	-	-	-	-	NULL
ZBTB22	9278	genome.wustl.edu	37	6	33283317	33283317	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001145338.1	-1	validated	p.T459	0.000	47	0%	60	45%	0	-	-	-	-	NULL
GTPBP2	54676	genome.wustl.edu	37	6	43594060	43594060	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000393882	-1	known	e1+1	0.997	34	0%	44	50%	2	50%	-	-	-	-
DST	667	genome.wustl.edu	37	6	56470604	56470604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000370769	-1	known	p.H2730R	0.002	211	0%	194	50.5%	0	-	possibly_damaging(0.681)	-	-	NULL
AIM1	202	genome.wustl.edu	37	6	106999814	106999814	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001624.2	+1	validated	p.G1392	0.996	83	0%	74	41.9%	0	-	-	-	-	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
GPRC6A	222545	genome.wustl.edu	37	6	117113446	117113446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_148963.2	-1	validated	p.M880I	0.000	127	0%	91	46.2%	0	-	benign(0)	tolerated(0.89)	-	NULL
PTPRK	5796	genome.wustl.edu	37	6	128404886	128404886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001135648.1	-1	validated	p.P517S	1.000	342	0%	261	47.5%	1	0%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
AHI1	54806	genome.wustl.edu	37	6	135749884	135749884	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001134830.1	-1	reviewed	p.K836*	1.000	169	0%	149	47.7%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
ADAT2	134637	genome.wustl.edu	37	6	143753673	143753673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_182503.2	-1	validated	p.A143V	1.000	261	0%	156	42.9%	3	0%	possibly_damaging(0.894)	tolerated(0.11)	deleterious(0.623)	superfamily_Cytidine deaminase-like
SASH1	23328	genome.wustl.edu	37	6	148865016	148865016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015278.3	+1	validated	p.V804M	0.002	54	0%	24	37.5%	0	-	benign(0.163)	tolerated(0.13)	neutral(0.267)	NULL
LOC100289162	100289162	genome.wustl.edu	37	6	160555197	160555197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002342677.1	-1	model	p.W299*	0.000	29	0%	23	47.8%	0	-	-	-	-	NULL
THBS2	7058	genome.wustl.edu	37	6	169632153	169632153	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003247.2	-1	reviewed	p.C691	0.998	64	0%	66	45.5%	0	-	-	-	-	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_2
TBP	6908	genome.wustl.edu	37	6	170871070	170871070	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003194.4	+1	reviewed	p.Q82	1.000	20	0%	12	41.7%	1	100%	-	-	-	NULL
LOC100132858	100132858	genome.wustl.edu	37	7	35442	35443	+	In_Frame_Ins	INS	-	-	TGCTGC	rs6979484	byCluster	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_001715131.2	-1	model	p.86in_frame_insQQ	0.128:0.044	-	-	-	-	-	-	-	-	-	NULL
IQCE	23288	genome.wustl.edu	37	7	2632713	2632713	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152558.3	+1	validated	p.C434	0.000	203	0.5%	131	44.3%	0	-	-	-	-	NULL
TSPAN13	27075	genome.wustl.edu	37	7	16793635	16793635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014399.3	+1	reviewed	p.A15T	1.000	43	0%	24	45.8%	2	0%	benign(0.417)	tolerated(0.18)	neutral(0.191)	HMMPfam_Tetraspannin
NOD1	10392	genome.wustl.edu	37	7	30472754	30472754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006092.2	-1	reviewed	p.L888S	0.954	295	0%	216	48.1%	7	42.8%	benign(0.086)	deleterious(0)	neutral(0.451)	superfamily_SSF52047
C7orf25	79020	genome.wustl.edu	37	7	42949725	42949725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001099858.1	-1	validated	p.V317I	0.998	125	0%	81	44.4%	9	11.1%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_DUF1308
ABCA13	154664	genome.wustl.edu	37	7	48467450	48467450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152701.3	+1	reviewed	p.G4183R	0.009	92	0%	52	30.8%	1	0%	benign(0.318)	-	-	NULL
LIMK1	3984	genome.wustl.edu	37	7	73523268	73523268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002314.2	+1	reviewed	p.V396M	1.000	40	0%	17	41.2%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GTF2IRD2B	389524	genome.wustl.edu	37	7	74528263	74528263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001003795.2	+1	reviewed	p.G58R	0.967	318	0%	213	25.4%	18	11.1%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
STYXL1	51657	genome.wustl.edu	37	7	75643143	75643143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016086.2	-1	validated	p.V124I	0.012	47	0%	37	24.3%	24	25%	possibly_damaging(0.771)	tolerated(0.13)	deleterious(0.539)	HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
ARPC1A	10552	genome.wustl.edu	37	7	98951579	98951579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006409.2	+1	reviewed	p.T183M	1.000	62	0%	41	46.3%	71	45%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
SLC26A4	5172	genome.wustl.edu	37	7	107303872	107303872	+	Missense_Mutation	SNP	C	C	T	rs141142414	by1000genomes	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000441.1	+1	reviewed	p.T99M	0.216	130	0.8%	113	48.7%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127999409	127999409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001114726.2	-1	validated	p.R213C	1.000	27	0%	17	52.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128434405	128434405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_022742.3	+1	validated	p.E7G	1.000	36	0%	63	47.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
FAM40B	57464	genome.wustl.edu	37	7	129102871	129102871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020704.2	+1	validated	p.P514L	1.000	37	0%	19	52.6%	1	0%	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131913111	131913111	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020911.1	-1	validated	p.N574	0.980	68	0%	31	48.4%	0	-	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135279304	135279304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015135.2	+1	validated	p.A614T	1.000	96	0%	62	53.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA1147	57189	genome.wustl.edu	37	7	141385359	141385359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001080392.1	-1	provisional	p.A149V	0.996	58	0%	43	53.5%	4	25%	possibly_damaging(0.568)	tolerated(0.37)	neutral(0.213)	HMMPfam_DUF2347
LRRC61	65999	genome.wustl.edu	37	7	150034401	150034401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001142928.1	+1	validated	p.R151W	0.003	42	0%	26	50%	22	45.4%	benign(0.008)	tolerated(0.15)	neutral(0.241)	superfamily_SSF52058
NCAPG2	54892	genome.wustl.edu	37	7	158448132	158448132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017760.5	-1	validated	p.L802I	0.001	23	0%	14	50%	2	50%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
PCM1	5108	genome.wustl.edu	37	8	17830103	17830103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006197.3	+1	validated	p.A1284T	1.000	45	0%	48	68.8%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C8orf58	541565	genome.wustl.edu	37	8	22460132	22460132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001013842.1	+1	validated	p.A321V	0.000	57	0%	43	55.8%	5	60%	benign(0.017)	tolerated(0.98)	neutral(0.001)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38148019	38148019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_023034.1	-1	reviewed	p.T1031I	1.000	155	0%	126	44.4%	0	-	benign(0.045)	tolerated(0.15)	neutral(0.243)	HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT
ANK1	286	genome.wustl.edu	37	8	41543753	41543753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001142446.1	-1	reviewed	p.R1477Q	1.000	104	0%	54	46.3%	0	-	possibly_damaging(0.878)	deleterious(0.03)	deleterious(0.707)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
PRKDC	5591	genome.wustl.edu	37	8	48811087	48811087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000314191	-1	known	p.R1136H	1.000	164	0%	110	22.7%	0	-	benign(0.299)	deleterious(0.05)	neutral(0.438)	superfamily_ARM repeat
MRPL15	29088	genome.wustl.edu	37	8	55055346	55055346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014175.3	+1	reviewed	p.D185N	1.000	300	0%	186	47.8%	45	48.8%	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_SSF52080
TGS1	96764	genome.wustl.edu	37	8	56723560	56723560	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024831.6	+1	validated	p.L755*	0.960	380	0.3%	202	17.8%	1	0%	-	-	-	HMMPfam_Methyltransf_15,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
UBXN2B	137886	genome.wustl.edu	37	8	59343131	59343131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001077619.1	+1	validated	p.T81I	1.000	143	0%	89	50.6%	2	50%	possibly_damaging(0.712)	tolerated(0.06)	deleterious(0.580)	NULL
CHD7	55636	genome.wustl.edu	37	8	61768610	61768610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017780.2	+1	reviewed	p.Q2338P	1.000	73	0%	41	46.3%	0	-	possibly_damaging(0.918)	tolerated(0.07)	deleterious(0.688)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68152431	68152431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006421.3	-1	reviewed	p.C982Y	1.000	142	0%	81	42%	0	-	probably_damaging(1)	tolerated(0.54)	deleterious(0.507)	superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68340287	68340287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020361.4	-1	validated	p.T374M	0.998	139	0%	97	44.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
NCOA2	10499	genome.wustl.edu	37	8	71039073	71039073	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006540.2	-1	validated	p.Q1297	1.000	203	0%	144	45.8%	0	-	-	-	-	HMMPfam_DUF1518
LRRCC1	85444	genome.wustl.edu	37	8	86050651	86050651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_033402.4	+1	validated	p.K927N	0.958	125	0%	99	49.5%	3	66.6%	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
CA3	761	genome.wustl.edu	37	8	86352101	86352101	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005181.3	+1	reviewed	p.T65	1.000	81	0%	70	48.6%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
ESRP1	54845	genome.wustl.edu	37	8	95654198	95654198	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017697.3	+1	validated	p.H49	0.997	21	0%	24	50%	2	50%	-	-	-	NULL
TM7SF4	81501	genome.wustl.edu	37	8	105361108	105361108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_030788.2	+1	reviewed	p.H110Y	1.000	87	0%	82	40.2%	0	-	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
EIF3E	3646	genome.wustl.edu	37	8	109229599	109229599	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001568.2	-1	validated	p.R271	0.998	274	0%	142	46.5%	148	54%	-	-	-	NULL
TRPS1	7227	genome.wustl.edu	37	8	116426722	116426722	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014112.2	-1	reviewed	p.P1138	1.000	222	0%	147	53.7%	6	33.3%	-	-	-	NULL
ZNF572	137209	genome.wustl.edu	37	8	125989088	125989088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152412.2	+1	validated	p.C193Y	1.000	60	0%	24	41.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TG	7038	genome.wustl.edu	37	8	133923631	133923631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003235.4	+1	reviewed	p.F1338L	0.000	280	0%	192	54.7%	0	-	benign(0.005)	tolerated(0.4)	neutral(0.016)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139163731	139163731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015912.3	-1	validated	p.Q996R	0.007	67	0%	42	47.6%	0	-	possibly_damaging(0.564)	deleterious(0)	deleterious(0.637)	NULL
LOC100288076	100288076	genome.wustl.edu	37	8	139890402	139890402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002342877.1	+1	model	p.A143T	0.856	7	0.000	7	0.714	0	-	-	-	-	NULL
EIF2C2	27161	genome.wustl.edu	37	8	141559263	141559263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000220592	-1	known	p.A513V	0.576	17	0%	13	61.5%	2	50%	benign(0)	tolerated(0.37)	neutral(0.019)	superfamily_Ribonuclease H-like
SMARCA2	6595	genome.wustl.edu	37	9	2161822	2161822	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003070.3	+1	reviewed	p.A1373G	1.000	90	0%	74	56.8%	0	-	benign(0.355)	tolerated(0.18)	neutral(0.169)	superfamily_Bromodomain
KIAA1432	57589	genome.wustl.edu	37	9	5742982	5742982	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020829.2	+1	validated	p.Q260*	1.000	489	0%	269	48.3%	0	-	-	-	-	superfamily_Amine_DH_B_like
FREM1	158326	genome.wustl.edu	37	9	14808127	14808127	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_144966.5	-1	reviewed	p.E967*	1.000	142	0%	99	48.5%	0	-	-	-	-	NULL
SNAPC3	6619	genome.wustl.edu	37	9	15457978	15457978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001039697.1	+1	validated	p.C334Y	1.000	289	0%	228	10.1%	4	0%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19328072	19328072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017925.4	+1	provisional	p.P486L	1.000	166	0%	102	55.9%	0	-	probably_damaging(0.979)	tolerated(0.16)	deleterious(0.481)	NULL
RPS6	6194	genome.wustl.edu	37	9	19376346	19376346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001010.2	-1	reviewed	p.R232H	1.000	80	0%	51	47.1%	6961	54.4%	unknown(0)	deleterious(0)	-	NULL
ACO1	48	genome.wustl.edu	37	9	32423377	32423377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002197.2	+1	reviewed	p.R344Q	1.000	163	0%	117	49.6%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
KIAA1161	57462	genome.wustl.edu	37	9	34371188	34371188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000297625	-1	known	p.P551L	1.000	6	0.000	7	0.714	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
RPP25L	138716	genome.wustl.edu	37	9	34611130	34611130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_148178.1	-1	validated	p.V55A	0.995	42	0%	24	70.8%	57	56.1%	possibly_damaging(0.717)	deleterious(0.01)	deleterious(0.665)	HMMPfam_Alba,superfamily_SSF82704
C9orf131	138724	genome.wustl.edu	37	9	35045624	35045624	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_203299.2	+1	validated	p.Q1000*	0.000	69	0%	54	46.3%	0	-	-	-	-	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37304271	37304271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032226.2	+1	validated	p.D247	0.997	128	0%	114	17.5%	6	50%	-	-	-	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
FRMPD1	22844	genome.wustl.edu	37	9	37740550	37740550	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014907.2	+1	validated	p.S675	0.001	40	0%	28	42.9%	0	-	-	-	-	NULL
APBA1	320	genome.wustl.edu	37	9	72064600	72064600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001163.3	-1	reviewed	p.A694V	1.000	75	0%	37	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
BICD2	23299	genome.wustl.edu	37	9	95481023	95481023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001003800.1	-1	reviewed	p.R635H	0.996	44	0%	26	34.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_BicD
FGD3	89846	genome.wustl.edu	37	9	95738787	95738787	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001083536.1	+1	validated	p.S83	1.000	18	0%	12	41.7%	0	-	-	-	-	NULL
PTCH1	5727	genome.wustl.edu	37	9	98209264	98209264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000264.3	-1	reviewed	p.S1425L	0.994	27	0%	24	58.3%	4	0%	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100077142	100077142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020893.1	+1	predicted	p.V420M	0.988	185	0%	131	45.8%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
C9orf156	51531	genome.wustl.edu	37	9	100672482	100672482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016481.3	-1	validated	p.P276T	0.045	145	0%	122	41%	11	45.4%	benign(0.011)	tolerated(0.1)	neutral(0.287)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101068516	101068516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005458.7	-1	reviewed	p.G706R	1.000	58	0%	37	45.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_3
ZNF462	58499	genome.wustl.edu	37	9	109690308	109690308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021224.4	+1	validated	p.R1372M	1.000	50	0%	25	64%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00355,superfamily_beta-sandwich domain of Sec23/24
ATP6V1G1	9550	genome.wustl.edu	37	9	117359933	117359933	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004888.3	+1	reviewed	p.R89	0.752	96	0%	76	42.1%	127	52.7%	-	-	-	HMMPfam_V-ATPase_G
GPR144	347088	genome.wustl.edu	37	9	127230873	127230873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000446588	+1	known	p.A24V	0.454	53	0%	30	40%	0	-	unknown(0)	-	-	NULL
PBX3	5090	genome.wustl.edu	37	9	128697853	128697853	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006195.5	+1	validated	p.E270	1.000	112	0%	87	47.1%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SNORA65	26783	genome.wustl.edu	37	9	130210845	130210845	+	RNA	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NR_002449.1	-1	provisional	NULL	0.999	26	0%	24	50%	9	55.5%	-	-	-	-
DBH	1621	genome.wustl.edu	37	9	136507513	136507513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000787.3	+1	reviewed	p.P224H	1.000	42	0%	32	56.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F
OLFM1	10439	genome.wustl.edu	37	9	137967647	137967647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006334.3	+1	reviewed	p.Q32R	1.000	39	0%	11	63.6%	0	-	unknown(0)	-	-	NULL
PFKP	5214	genome.wustl.edu	37	10	3174635	3174636	+	Splice_Site	INS	-	-	GA	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002627.3	+1	validated	e18+2	0.998:0.331	-	-	-	-	-	-	-	-	-	-
NET1	10276	genome.wustl.edu	37	10	5471142	5471142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001047160.1	+1	validated	p.R69C	1.000	115	0%	92	50%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7409703	7409703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001029880.1	-1	provisional	p.R115H	1.000	58	0%	25	64%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
C1QL3	389941	genome.wustl.edu	37	10	16562694	16562694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001010908.1	-1	validated	p.V124G	1.000	32	0%	16	50%	0	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMSmart_SM00110,superfamily_TNF-like
KIAA1217	56243	genome.wustl.edu	37	10	24832181	24832181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_019590.3	+1	validated	p.S1328T	0.000	89	0%	67	49.3%	7	57.1%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
SVIL	6840	genome.wustl.edu	37	10	29756739	29756739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021738.2	-1	reviewed	p.S1970F	0.849	102	0%	69	47.8%	11	36.3%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
ZNF33A	7581	genome.wustl.edu	37	10	38343765	38343766	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006954.1	+1	validated	p.N241fs	0.013:0.013	-	-	-	-	-	-	-	-	-	NULL
PRKG1	5592	genome.wustl.edu	37	10	53814320	53814320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006258.2	+1	validated	p.T280M	0.994	164	0%	121	45.5%	0	-	possibly_damaging(0.579)	deleterious(0.02)	deleterious(0.582)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
RHOBTB1	9886	genome.wustl.edu	37	10	62648704	62648704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014836.4	-1	reviewed	p.P241L	1.000	207	0%	142	48.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_BTB/POZ_fold
REEP3	221035	genome.wustl.edu	37	10	65379554	65379554	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001001330.2	+1	validated	p.R235	0.979	99	0%	63	49.2%	29	62%	-	-	-	NULL
TET1	80312	genome.wustl.edu	37	10	70405901	70405901	+	Missense_Mutation	SNP	T	T	A	rs10998363	byCluster;byFrequency;by1000genomes	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_030625.2	+1	validated	p.L1139I	0.000	163	0%	155	47.7%	0	-	benign(0.208)	tolerated(0.3)	neutral(0.049)	NULL
CCAR1	55749	genome.wustl.edu	37	10	70525793	70525793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018237.2	+1	validated	p.L752P	1.000	131	0%	107	42.1%	21	52.3%	unknown(0)	deleterious(0)	-	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75407557	75407557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001114133.1	-1	validated	p.A618V	1.000	37	0%	12	41.7%	0	-	benign(0.097)	deleterious(0.01)	neutral(0.413)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78868273	78868273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001014797.2	-1	reviewed	p.Y397H	1.000	161	0%	100	37%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
DLG5	9231	genome.wustl.edu	37	10	79576791	79576791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004747.3	-1	reviewed	p.P1283L	0.999	221	0%	167	42.5%	2	0%	benign(0.049)	deleterious(0.01)	neutral(0.409)	NULL
DLG5	9231	genome.wustl.edu	37	10	79590511	79590511	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004747.3	-1	reviewed	p.F623	1.000	83	0%	58	10.3%	1	0%	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
POLR3A	11128	genome.wustl.edu	37	10	79781726	79781726	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007055.3	-1	validated	p.Q314*	1.000	88	0%	64	51.6%	0	-	-	-	-	HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
PTEN	5728	genome.wustl.edu	37	10	89685281	89685294	+	Frame_Shift_Del	DEL	CAAAGCATAAAAAC	CAAAGCATAAAAAC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CAAAGCATAAAAAC	CAAAGCATAAAAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000371953	+1	known	p.K60fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000371953	+1	known	p.R233*	0.984	145	0%	104	48.1%	16	56.2%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
IFIT2	3433	genome.wustl.edu	37	10	91066930	91066930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001547.4	+1	validated	p.R406M	0.000	153	0%	87	10.3%	0	-	benign(0.149)	tolerated(0.23)	neutral(0.054)	superfamily_SSF48452
BTAF1	9044	genome.wustl.edu	37	10	93711261	93711261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003972.2	+1	validated	p.L168F	1.000	161	0%	131	47.3%	0	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	superfamily_ARM repeat
BTAF1	9044	genome.wustl.edu	37	10	93773674	93773674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003972.2	+1	validated	p.A1491V	1.000	228	0%	127	50.4%	5	0%	possibly_damaging(0.686)	deleterious(0.01)	deleterious(0.651)	HMMPfam_SNF2_N
FBXW4	6468	genome.wustl.edu	37	10	103372159	103372159	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_022039.3	-1	reviewed	p.P304	0.993	41	0%	22	45.5%	56	50%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
SFR1	119392	genome.wustl.edu	37	10	105883632	105883632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001002759.1	+1	validated	p.Q99R	0.177	83	0%	62	33.9%	2	50%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Mei5
KIAA1598	57698	genome.wustl.edu	37	10	118666215	118666215	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001127211.1	-1	validated	p.L468R	1.000	217	0%	146	44.5%	1	0%	benign(0.34)	tolerated(0.23)	neutral(0.149)	NULL
WDR11	55717	genome.wustl.edu	37	10	122646251	122646251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018117.11	+1	reviewed	p.A675V	1.000	101	0%	67	44.8%	4	0%	benign(0.001)	tolerated(1)	-	superfamily_WD40_like
UROS	7390	genome.wustl.edu	37	10	127503639	127503639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000375.2	-1	reviewed	p.A70S	0.000	154	0%	97	39.2%	13	38.4%	benign(0.027)	deleterious(0)	neutral(0.446)	HMMPfam_HEM4,superfamily_Uroporphyrinogen III synthase (U3S HemD)
ADAM12	8038	genome.wustl.edu	37	10	127738177	127738177	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003474.4	-1	reviewed	p.G560	0.991	102	0%	61	50.8%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
DOCK1	1793	genome.wustl.edu	37	10	128841417	128841417	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000398025	+1	known	p.T709	0.000	232	0%	201	41.8%	1	0%	-	-	-	NULL
JAKMIP3	282973	genome.wustl.edu	37	10	133950772	133950772	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001105521.2	+1	provisional	p.A421	0.782	52	0%	35	34.3%	0	-	-	-	-	NULL
DEAF1	10522	genome.wustl.edu	37	11	674719	674719	+	Silent	SNP	C	C	T	rs187523180	by1000genomes	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021008.2	-1	validated	p.A440	0.000	24	0%	21	23.8%	91	16.4%	-	-	-	NULL
MUC6	4588	genome.wustl.edu	37	11	1024973	1024973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005961.2	-1	validated	p.K1032N	1.000	41	0%	17	35.3%	0	-	unknown(0)	deleterious(0)	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1269116	1269116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002458.1	+1	validated	p.G3672D	0.001	127	0%	73	38.4%	8	37.5%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271469	1271469	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002458.1	+1	validated	p.P4456	0.000	150	0%	105	48.6%	14	0%	-	-	-	NULL
DCHS1	8642	genome.wustl.edu	37	11	6646867	6646867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003737.2	-1	reviewed	p.P2275T	1.000	25	0%	18	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
NLRP14	338323	genome.wustl.edu	37	11	7068046	7068046	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_176822.3	+1	reviewed	p.C702	1.000	151	0%	113	47.8%	0	-	-	-	-	superfamily_SSF52047
COPB1	1315	genome.wustl.edu	37	11	14504652	14504652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001144061.1	-1	reviewed	p.N295D	1.000	139	0%	106	34%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
IGSF22	283284	genome.wustl.edu	37	11	18735879	18735879	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_173588.3	-1	validated	p.G581	1.000	56	0%	35	48.6%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
SLC17A6	57084	genome.wustl.edu	37	11	22399005	22399005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020346.2	+1	validated	p.G490*	1.000	108	0%	63	42.9%	0	-	-	-	-	superfamily_MFS_gen_substrate_transporter
LGR4	55366	genome.wustl.edu	37	11	27389662	27389662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018490.2	-1	validated	p.V870L	0.055	62	0%	58	51.7%	0	-	benign(0.059)	tolerated(0.23)	neutral(0.045)	NULL
MPPED2	744	genome.wustl.edu	37	11	30439137	30439137	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001584.2	-1	reviewed	p.Q194*	1.000	69	0%	39	35.9%	0	-	-	-	-	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
C11orf41	25758	genome.wustl.edu	37	11	33566610	33566610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012194.1	+1	validated	p.A733V	0.898	55	0%	81	55.6%	0	-	possibly_damaging(0.442)	deleterious(0.02)	deleterious(0.527)	NULL
TTC17	55761	genome.wustl.edu	37	11	43419014	43419014	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018259.5	+1	validated	p.S297	1.000	155	0%	100	35%	0	-	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
DDB2	1643	genome.wustl.edu	37	11	47259499	47259499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000107.2	+1	reviewed	p.S379P	1.000	94	0%	53	11.3%	23	13%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_WD40 repeat-like
NR1H3	10062	genome.wustl.edu	37	11	47282217	47282217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005693.2	+1	validated	p.R164W	1.000	25	0%	11	36.4%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PTPRJ	5795	genome.wustl.edu	37	11	48181546	48181546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002843.3	+1	reviewed	p.M1168T	0.385	104	0%	78	53.8%	2	0%	possibly_damaging(0.441)	tolerated(0.23)	neutral(0.185)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
ZDHHC5	25921	genome.wustl.edu	37	11	57466827	57466827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015457.2	+1	validated	p.Q640P	1.000	30	0%	13	53.8%	48	43.7%	benign(0.02)	tolerated(0.43)	neutral(0.014)	NULL
BTBD18	643376	genome.wustl.edu	37	11	57511836	57511836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001145101.1	-1	validated	p.G637R	0.003	76	0%	59	39%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
DTX4	23220	genome.wustl.edu	37	11	58949673	58949673	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015177.1	+1	validated	p.G225*	0.453	7	0.000	16	0.562	2	0%	-	-	-	NULL
GPR137	56834	genome.wustl.edu	37	11	64054042	64054042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020155.3	+1	validated	p.P16S	1.000	41	0%	22	40.9%	17	52.9%	possibly_damaging(0.771)	deleterious(0)	deleterious(0.731)	NULL
GPR137	56834	genome.wustl.edu	37	11	64055311	64055311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020155.3	+1	validated	p.V176I	1.000	12	0%	33	36.4%	29	55.1%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
KLC2	64837	genome.wustl.edu	37	11	66029435	66029435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001134775.1	+1	validated	p.S151P	0.991	30	0%	27	51.9%	6	50%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_Rab5-bind
INPPL1	3636	genome.wustl.edu	37	11	71944516	71944516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001567.3	+1	reviewed	p.R691Q	1.000	80	0%	35	57.1%	33	60.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
INPPL1	3636	genome.wustl.edu	37	11	71949201	71949201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001567.3	+1	reviewed	p.D1223G	1.000	40	0%	19	68.4%	118	34.7%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
P2RY6	5031	genome.wustl.edu	37	11	73007750	73007750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004154.3	+1	reviewed	p.V63M	0.852	66	0%	59	47.5%	3	0%	possibly_damaging(0.913)	deleterious(0.01)	deleterious(0.770)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100287896	100287896	genome.wustl.edu	37	11	74208979	74208979	+	Silent	SNP	T	T	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002343118.1	+1	model	p.L343	0.437	49	0%	36	61.1%	3	33.3%	-	-	-	NULL
LRRC32	2615	genome.wustl.edu	37	11	76371133	76371133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001128922.1	-1	reviewed	p.G502R	1.000	7	0.000	9	0.444	1	0%	benign(0.405)	tolerated(0.05)	deleterious(0.476)	superfamily_SSF52058
NOX4	50507	genome.wustl.edu	37	11	89133422	89133422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016931.3	-1	reviewed	p.I324M	0.872	168	0%	98	49%	0	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
TRIM77P	390231	genome.wustl.edu	37	11	89515071	89515071	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000398290	+1	known	p.T294	0.002	61	0%	51	25.5%	0	-	-	-	-	NULL
CEP57	9702	genome.wustl.edu	37	11	95546160	95546160	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014679.3	+1	validated	p.Q89	0.998	161	0%	108	40.7%	1	0%	unknown(0)	-	-	NULL
PDZD3	79849	genome.wustl.edu	37	11	119058824	119058824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024791.3	+1	validated	p.R264Q	0.996	25	0%	10	60%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
CHEK1	1111	genome.wustl.edu	37	11	125505413	125505413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001114121.1	+1	validated	p.D235N	0.978	86	1.2%	42	40.5%	2	0%	benign(0.019)	tolerated(0.38)	neutral(0.019)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIRREL3	84623	genome.wustl.edu	37	11	126343309	126343309	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032531.3	-1	reviewed	p.A162	0.001	30	0%	22	36.4%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
ARHGAP32	9743	genome.wustl.edu	37	11	128843183	128843183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001142685.1	-1	validated	p.L1059S	0.632	138	0%	90	50%	0	-	possibly_damaging(0.647)	deleterious(0)	deleterious(0.671)	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1995181	1995181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_172364.4	-1	reviewed	p.E340K	1.000	64	0%	57	49.1%	0	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	HMMSmart_SM00327,superfamily_vWA-like
KCNA6	3742	genome.wustl.edu	37	12	4920503	4920503	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002235.3	+1	reviewed	p.T432	0.005	87	0%	61	49.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
USP5	8078	genome.wustl.edu	37	12	6966812	6966812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001098536.1	+1	validated	p.E263D	0.998	49	0%	34	58.8%	2	50%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_zf-UBP
RBP5	83758	genome.wustl.edu	37	12	7280847	7280847	+	Nonsense_Mutation	SNP	G	G	A	rs191452484	by1000genomes	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_031491.2	-1	provisional	p.R81*	1.000	98	0%	60	51.7%	1	100%	-	-	-	HMMPfam_Lipocalin,superfamily_Calycin
CD163L1	283316	genome.wustl.edu	37	12	7548789	7548789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_174941.4	-1	reviewed	p.S651F	0.050	99	1%	70	51.4%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
LOC100287458	100287458	genome.wustl.edu	37	12	8372278	8372278	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002343152.1	+1	model	p.L24	0.001	119	0%	39	33.3%	0	-	-	-	-	NULL
STRAP	11171	genome.wustl.edu	37	12	16052953	16052953	+	Silent	SNP	A	A	T	rs34382225		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007178.3	+1	validated	p.G297	1.000	205	0%	113	53.1%	23	0%	-	-	-	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18715764	18715764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004570.4	+1	reviewed	p.L1199M	0.002	196	0%	149	41.6%	0	-	benign(0.246)	tolerated(0.41)	neutral(0.040)	superfamily_PX domain
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	byCluster	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_033360.2	-1	reviewed	p.G12A	1.000	201	0%	113	47.8%	1	0%	possibly_damaging(0.434)	deleterious(0.03)	deleterious(0.506)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAR2	55711	genome.wustl.edu	37	12	29446331	29446331	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018099.3	+1	provisional	p.E96D	0.994	156	0%	203	40.9%	1	100%	possibly_damaging(0.795)	tolerated(0.28)	neutral(0.330)	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
CAPRIN2	65981	genome.wustl.edu	37	12	30869587	30869587	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001002259.1	-1	validated	p.L773	1.000	514	0%	473	44.4%	2	50%	-	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40714929	40714929	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_198578.3	+1	reviewed	p.G1703	0.995	303	0.3%	208	43.8%	0	-	-	-	-	NULL
FAM113B	91523	genome.wustl.edu	37	12	47629981	47629981	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_138371.1	+1	predicted	p.L379	0.034	137	0%	82	53.7%	42	52.3%	-	-	-	NULL
ADCY6	112	genome.wustl.edu	37	12	49170284	49170284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015270.3	-1	reviewed	p.R488W	1.000	18	0%	13	53.8%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
KRT71	112802	genome.wustl.edu	37	12	52938419	52938419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_033448.2	-1	reviewed	p.V490A	0.587	33	0%	31	29%	0	-	benign(0.01)	tolerated(0.96)	neutral(0.001)	NULL
KRT3	3850	genome.wustl.edu	37	12	53189576	53189576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_057088.2	-1	reviewed	p.R84Q	0.102	290	0%	144	54.2%	0	-	unknown(0)	deleterious(0.04)	-	NULL
LOC100288280	100288280	genome.wustl.edu	37	12	55808224	55808224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002343188.1	+1	model	p.W15C	0.585	85	0%	65	58.5%	3	0%	-	-	-	NULL
RDH5	5959	genome.wustl.edu	37	12	56117834	56117834	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002905.3	+1	reviewed	e3+1	1.000	16	0%	12	66.7%	6	50%	-	-	-	-
TIMELESS	8914	genome.wustl.edu	37	12	56817597	56817597	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003920.3	-1	validated	p.L650	0.063	172	0%	103	39.8%	1	100%	-	-	-	NULL
MYF6	4618	genome.wustl.edu	37	12	81101669	81101669	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002469.2	+1	reviewed	p.S57	0.982	43	0%	21	47.6%	0	-	-	-	-	HMMPfam_Basic,HMMSmart_SM00520
FGD6	55785	genome.wustl.edu	37	12	95485509	95485509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018351.3	-1	validated	p.H1275R	0.674	287	0%	224	44.6%	1	0%	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
UTP20	27340	genome.wustl.edu	37	12	101706034	101706034	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014503.2	+1	validated	p.P844	0.006	75	0%	48	58.3%	0	-	-	-	-	superfamily_ARM repeat
MYBPC1	4604	genome.wustl.edu	37	12	102045111	102045111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002465.2	+1	validated	p.W489L	1.000	200	0.5%	136	39.7%	0	-	benign(0.026)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
UBE3B	89910	genome.wustl.edu	37	12	109924379	109924379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_130466.2	+1	reviewed	p.K149R	1.000	107	0%	87	36.8%	1	100%	benign(0.183)	tolerated(0.28)	neutral(0.049)	NULL
TCTN1	79600	genome.wustl.edu	37	12	111085554	111085554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001082538.2	+1	reviewed	p.A546T	0.001	61	0%	49	38.8%	156	44.2%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
NOS1	4842	genome.wustl.edu	37	12	117685236	117685236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000620.2	-1	reviewed	p.E914K	1.000	103	0%	51	25.5%	0	-	possibly_damaging(0.891)	tolerated(0.34)	neutral(0.373)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
TCTN2	79867	genome.wustl.edu	37	12	124189157	124189157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024809.3	+1	validated	p.L564P	0.086	50	0%	18	44.4%	7	57.1%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124270411	124270411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_207437.3	+1	validated	p.P389L	1.000	61	0%	29	27.6%	0	-	benign(0.122)	tolerated(0.26)	neutral(0.044)	HMMPfam_DHC_N1
ZNF268	10795	genome.wustl.edu	37	12	133779658	133779658	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003415.2	+1	validated	p.H462	0.830	157	0%	93	38.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SHISA2	387914	genome.wustl.edu	37	13	26620840	26620840	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001007538.1	-1	provisional	p.T233	0.980	67	0%	52	46.2%	1	0%	-	-	-	NULL
CCDC169	728591	genome.wustl.edu	37	13	36869990	36869990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001144981.1	-1	validated	p.A30T	0.869	406	0%	311	11.9%	0	-	benign(0.039)	tolerated(0.12)	neutral(0.263)	NULL
KIAA0226L	80183	genome.wustl.edu	37	13	46919711	46919711	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_025113.2	-1	validated	p.V552	0.997	50	0%	21	42.9%	3	0%	-	-	-	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60565356	60565356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001042517.1	-1	validated	p.A433T	0.993	209	0%	156	48.1%	0	-	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	HMMPfam_Drf_FH3
LOC643677	643677	genome.wustl.edu	37	13	103388024	103388024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002344085.1	-1	model	p.T4856I	0.004	308	0%	255	51%	0	-	possibly_damaging(0.539)	deleterious(0.01)	deleterious(0.588)	NULL
ATP11A	23250	genome.wustl.edu	37	13	113510240	113510240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032189.3	+1	reviewed	p.M753I	0.991	75	0%	41	46.3%	0	-	benign(0.025)	tolerated(0.39)	neutral(0.017)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
TFDP1	7027	genome.wustl.edu	37	13	114288230	114288230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007111.4	+1	reviewed	p.R167Q	1.000	75	0%	53	13.2%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
ACIN1	22985	genome.wustl.edu	37	14	23549377	23549378	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014977.3	-1	validated	p.V448fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LTB4R	1241	genome.wustl.edu	37	14	24785035	24785035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001143919.2	+1	validated	p.L60M	0.997	86	0%	68	48.5%	25	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
LRFN5	145581	genome.wustl.edu	37	14	42356394	42356394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152447.3	+1	validated	p.G189E	1.000	99	0%	87	12.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
NID2	22795	genome.wustl.edu	37	14	52534598	52534598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007361.3	-1	validated	p.R171H	0.004	8	0.000	10	0.400	0	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMSmart_SM00539
KIAA0586	9786	genome.wustl.edu	37	14	58938915	58938915	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014749.3	+1	validated	e17-2	0.997	165	0%	110	52.7%	0	-	-	-	-	-
ACOT4	122970	genome.wustl.edu	37	14	74061969	74061969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152331.3	+1	validated	p.V293M	0.993	64	0%	30	40%	9	33.3%	benign(0.122)	tolerated(0.23)	neutral(0.052)	HMMPfam_BAAT_C,superfamily_SSF53474
RPS6KL1	83694	genome.wustl.edu	37	14	75388104	75388104	+	Silent	SNP	A	A	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_031464.3	-1	validated	p.R47	0.811	46	0%	25	36%	0	-	-	-	-	HMMSmart_MIT
GPR65	8477	genome.wustl.edu	37	14	88477252	88477252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003608.3	+1	validated	p.Y21H	0.995	118	0%	126	50.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
TRAF3	7187	genome.wustl.edu	37	14	103352603	103352603	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003300.2	+1	reviewed	p.S216	0.948	23	0%	17	47.1%	2	0%	-	-	-	HMMPfam_zf-TRAF
AHNAK2	113146	genome.wustl.edu	37	14	105412392	105412392	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_138420.2	-1	validated	p.A3132	0.000	101	0%	39	69.2%	0	-	-	-	-	NULL
PACS2	23241	genome.wustl.edu	37	14	105851300	105851300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001100913.1	+1	validated	p.A659V	1.000	31	0%	15	53.3%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pacs-1
LOC283685	283685	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002343322.1	-1	model	p.K528in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
JMJD7	100137047	genome.wustl.edu	37	15	42129090	42129090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001114632.1	+1	validated	p.P272S	1.000	32	0%	20	55%	75	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
TRPM7	54822	genome.wustl.edu	37	15	50862153	50862155	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017672.4	-1	reviewed	p.G1799in_frame_del	1.000:0.993:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like
NARG2	79664	genome.wustl.edu	37	15	60728342	60728342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024611.4	-1	validated	p.K837R	1.000	152	0%	110	50.9%	3	66.6%	possibly_damaging(0.837)	deleterious(0.04)	deleterious(0.668)	HMMPfam_NARG2_C
HERC1	8925	genome.wustl.edu	37	15	64011054	64011055	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003922.3	-1	reviewed	p.T1262fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PDCD7	10081	genome.wustl.edu	37	15	65421428	65421428	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005707.1	-1	reviewed	p.D317	0.993	350	0%	236	47.5%	3	66.6%	-	-	-	NULL
ITGA11	22801	genome.wustl.edu	37	15	68624739	68624739	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001004439.1	-1	reviewed	p.G501	0.829	20	0%	23	52.2%	2	0%	-	-	-	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
CYP1A2	1544	genome.wustl.edu	37	15	75047325	75047325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000761.3	+1	reviewed	p.V483M	0.004	32	0%	24	37.5%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_p450,superfamily_Cytochrome_P450
LMAN1L	79748	genome.wustl.edu	37	15	75111596	75111596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021819.2	+1	validated	p.A234V	1.000	170	0%	86	46.5%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Lectin_leg-like,superfamily_Concanavalin A-like lectins/glucanases
SYNM	23336	genome.wustl.edu	37	15	99670836	99670836	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_145728.2	+1	reviewed	p.A757V	0.000	63	0%	56	46.4%	1	0%	-	-	-	NULL
WFIKKN1	117166	genome.wustl.edu	37	16	682616	682616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_053284.2	+1	reviewed	p.V69E	1.000	9	0.000	13	0.385	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP
MAPK8IP3	23162	genome.wustl.edu	37	16	1812350	1812350	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015133.3	+1	reviewed	e14-2	1.000	31	0%	20	45%	7	100%	-	-	-	-
TRAP1	10131	genome.wustl.edu	37	16	3713495	3713497	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016292.2	-1	validated	p.K546in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
LITAF	9516	genome.wustl.edu	37	16	11647396	11647396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001136472.1	-1	reviewed	p.L124M	1.000	25	0%	41	48.8%	10	90%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00714,HMMPfam_zf-LITAF-like
C16orf45	89927	genome.wustl.edu	37	16	15680603	15680603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_033201.2	+1	validated	p.P178S	1.000	16	0%	15	66.7%	2	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
SMG1	23049	genome.wustl.edu	37	16	18856797	18856797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015092.4	-1	reviewed	p.P2058Q	0.999	133	0%	92	10.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EEF2K	29904	genome.wustl.edu	37	16	22277718	22277718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_013302.3	+1	reviewed	p.V483A	1.000	68	0%	38	52.6%	2	0%	possibly_damaging(0.815)	tolerated(0.79)	neutral(0.308)	NULL
IL21R	50615	genome.wustl.edu	37	16	27445739	27445739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021798.2	+1	reviewed	p.N41D	0.578	80	0%	38	65.8%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27788981	27788981	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015202.2	+1	validated	p.S1534	1.000	32	0%	26	57.7%	2	50%	-	-	-	NULL
TAOK2	9344	genome.wustl.edu	37	16	29996670	29996670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016151.2	+1	validated	p.H520R	1.000	8	0.000	10	0.400	13	15.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF785	146540	genome.wustl.edu	37	16	30593994	30593994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152458.5	-1	provisional	p.R369C	0.002	16	0%	13	38.5%	2	50%	benign(0.044)	deleterious(0.01)	neutral(0.408)	NULL
ITGAM	3684	genome.wustl.edu	37	16	31332563	31332563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000632.3	+1	reviewed	p.R570Q	0.770	201	0%	121	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Int_alpha,superfamily_SSF69318
NOD2	64127	genome.wustl.edu	37	16	50744940	50744940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_022162.1	+1	reviewed	p.R373H	0.004	50	0%	29	51.7%	1	0%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
SALL1	6299	genome.wustl.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCT	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002968.2	-1	reviewed	p.159in_frame_insS	0.005:0.007	-	-	-	-	-	-	-	-	-	NULL
CDH5	1003	genome.wustl.edu	37	16	66429989	66429989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001795.3	+1	reviewed	p.K415N	0.485	61	0%	43	53.5%	0	-	benign(0.01)	tolerated(0.5)	neutral(0.011)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
KCTD19	146212	genome.wustl.edu	37	16	67337088	67337088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001100915.1	-1	provisional	p.A202T	1.000	53	0%	19	47.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_BTB/POZ_fold
TMCO7	79613	genome.wustl.edu	37	16	68943267	68943267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024562.1	+1	validated	p.E652K	0.992	66	0%	54	40.7%	0	-	benign(0.003)	tolerated(0.48)	neutral(0.011)	superfamily_ARM repeat,HMMPfam_DUF2435
TMCO7	79613	genome.wustl.edu	37	16	68961563	68961563	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024562.1	+1	validated	p.L740	0.573	167	0%	201	48.8%	1	100%	-	-	-	superfamily_ARM repeat,HMMPfam_DUF2435
ST3GAL2	6483	genome.wustl.edu	37	16	70422438	70422438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006927.3	-1	reviewed	p.A182V	1.000	40	0%	23	52.2%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
WDR59	79726	genome.wustl.edu	37	16	74927608	74927608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_030581.3	-1	validated	p.P657S	1.000	202	0%	116	16.4%	9	22.2%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
C16orf46	123775	genome.wustl.edu	37	16	81095044	81095044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152337.2	-1	validated	p.L304M	0.958	71	0%	66	51.5%	0	-	possibly_damaging(0.483)	deleterious(0)	deleterious(0.605)	NULL
JPH3	57338	genome.wustl.edu	37	16	87723822	87723822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020655.2	+1	reviewed	p.L619P	0.977	9	0.000	8	0.625	0	-	benign(0.038)	deleterious(0.04)	neutral(0.351)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3968074	3968074	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015113.3	-1	validated	p.T1433	0.168	18	0%	15	60%	0	-	-	-	-	NULL
PHF23	79142	genome.wustl.edu	37	17	7139464	7139466	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024297.2	-1	validated	p.E261in_frame_del	0.962:0.995:0.987	-	-	-	-	-	-	-	-	-	NULL
MYH10	4628	genome.wustl.edu	37	17	8457295	8457295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005964.1	-1	validated	p.I256	0.897	145	0%	137	43.1%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH10	4628	genome.wustl.edu	37	17	8526255	8526255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005964.1	-1	validated	p.N104D	1.000	225	0%	198	47.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH2	4620	genome.wustl.edu	37	17	10451216	10451216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001100112.1	-1	reviewed	p.A8T	1.000	89	0%	68	42.6%	0	-	benign(0.008)	deleterious(0.04)	neutral(0.349)	NULL
ALDH3A1	218	genome.wustl.edu	37	17	19646481	19646481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000333946	-1	known	p.D70N	0.000	17	0%	11	54.5%	0	-	-	-	-	NULL
C17orf51	339263	genome.wustl.edu	37	17	21438641	21438641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001113434.3	-1	validated	p.R196W	0.007	104	0%	71	47.9%	0	-	unknown(0)	-	-	NULL
SEBOX	645832	genome.wustl.edu	37	17	26691547	26691547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001080837.2	-1	validated	p.P132S	0.004	86	0%	35	48.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CRLF3	51379	genome.wustl.edu	37	17	29131039	29131039	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015986.3	-1	validated	p.R73*	1.000	172	0%	99	50.5%	7	42.8%	-	-	-	NULL
TEFM	79736	genome.wustl.edu	37	17	29231161	29231161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024683.3	-1	validated	p.R140W	0.000	203	0.5%	168	41.7%	5	20%	possibly_damaging(0.819)	deleterious(0.02)	deleterious(0.693)	NULL
SLFN13	146857	genome.wustl.edu	37	17	33771672	33771673	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_144682.5	-1	validated	p.T343fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
RASL10B	91608	genome.wustl.edu	37	17	34062393	34062393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_033315.3	+1	validated	p.S64G	1.000	41	0%	21	38.1%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Miro,superfamily_SSF52540
C17orf66	256957	genome.wustl.edu	37	17	34185485	34185485	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152781.2	-1	validated	p.P328	0.011	67	0%	46	43.5%	0	-	-	-	-	superfamily_ARM repeat
C17orf66	256957	genome.wustl.edu	37	17	34191160	34191160	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000417195	-1	known	p.C219	0.000	44	0%	44	45.5%	4	0%	-	-	-	NULL
ERBB2	2064	genome.wustl.edu	37	17	37883626	37883626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004448.2	+1	reviewed	p.G1080W	0.987	22	0%	20	55%	70	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRTAP4-8	728224	genome.wustl.edu	37	17	39254160	39254160	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000333822	-1	known	p.C59	0.861	46	0%	24	16.7%	0	-	-	-	-	HMMPfam_Keratin_B2
TUBG2	27175	genome.wustl.edu	37	17	40815441	40815441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016437.2	+1	validated	p.D176N	1.000	118	0%	74	31.1%	23	39.1%	benign(0.077)	tolerated(0.49)	neutral(0.016)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
ITGA2B	3674	genome.wustl.edu	37	17	42458348	42458348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000419.3	-1	reviewed	p.R431M	0.102	18	0%	20	45%	2	100%	benign(0.346)	tolerated(0.17)	neutral(0.168)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
HOXB1	3211	genome.wustl.edu	37	17	46608207	46608207	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002144.3	-1	reviewed	p.S20	1.000	35	0%	12	41.7%	0	-	-	-	-	NULL
TMEM92	162461	genome.wustl.edu	37	17	48356636	48356636	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_153229.2	+1	validated	p.G149	0.000	63	0%	25	68%	1	0%	-	-	-	NULL
CHAD	1101	genome.wustl.edu	37	17	48542758	48542758	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000503739	-1	known	p.L36F	0.955	50	0%	17	52.9%	0	-	-	-	-	HMMPfam_LRRCT,HMMSmart_SM00082
MYCBPAP	84073	genome.wustl.edu	37	17	48600355	48600357	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032133.4	+1	validated	p.S483in_frame_del	0.966:0.008:0.174	-	-	-	-	-	-	-	-	-	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48655854	48655854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018896.3	+1	validated	p.Y744H	1.000	46	0%	30	43.3%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	superfamily_Voltage-gated potassium channels
RGS9	8787	genome.wustl.edu	37	17	63159209	63159209	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003835.3	+1	reviewed	e7+2	1.000	101	0%	98	45.9%	0	-	-	-	-	-
ABCA8	10351	genome.wustl.edu	37	17	66877282	66877282	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007168.2	-1	reviewed	p.D1299	1.000	396	0%	274	43.4%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
EVPL	2125	genome.wustl.edu	37	17	74018551	74018551	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001988.2	-1	validated	p.N183	1.000	35	0%	17	52.9%	1	0%	-	-	-	superfamily_Spectrin repeat
PGS1	9489	genome.wustl.edu	37	17	76388606	76388606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024419.3	+1	provisional	p.V65I	0.748	87	0%	59	52.5%	4	50%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
CYTH1	9267	genome.wustl.edu	37	17	76704315	76704315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004762.2	-1	reviewed	p.A45V	0.996	158	0%	154	42.2%	3	33.3%	benign(0.01)	tolerated(0.87)	neutral(0.001)	NULL
FASN	2194	genome.wustl.edu	37	17	80037348	80037348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004104.4	-1	reviewed	p.R2428H	0.986	22	0%	21	47.6%	180	52.2%	probably_damaging(0.96)	tolerated(0.13)	deleterious(0.655)	HMMPfam_Thioesterase,superfamily_alpha/beta-Hydrolases
FN3KRP	79672	genome.wustl.edu	37	17	80684784	80684784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024619.3	+1	validated	p.V223I	1.000	59	0%	15	46.7%	7	28.5%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	superfamily_Kinase_like,HMMPfam_Fructosamin_kin
METRNL	284207	genome.wustl.edu	37	17	81052135	81052135	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001004431.1	+1	provisional	p.Q251*	0.507	21	0%	22	63.6%	15	0%	-	-	-	NULL
CEP76	79959	genome.wustl.edu	37	18	12678360	12678360	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024899.2	-1	provisional	p.G457	0.983	173	0%	153	19%	2	0%	-	-	-	NULL
DTNA	1837	genome.wustl.edu	37	18	32457705	32457705	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001390.4	+1	reviewed	p.N615	1.000	148	0%	137	48.2%	0	-	-	-	-	NULL
MBD1	4152	genome.wustl.edu	37	18	47800579	47800579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015846.3	-1	reviewed	p.R375C	1.000	13	0%	15	60%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CXXC
ZNF532	55205	genome.wustl.edu	37	18	56586563	56586563	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018181.4	+1	validated	p.P348	0.003	64	0%	30	60%	2	0%	-	-	-	NULL
SERPINB2	5055	genome.wustl.edu	37	18	61570240	61570240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001143818.1	+1	validated	p.H317Y	0.004	104	0%	89	41.6%	0	-	benign(0.073)	deleterious(0.01)	neutral(0.411)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDH7	1005	genome.wustl.edu	37	18	63477235	63477235	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004361.2	+1	reviewed	e2+1	1.000	25	0%	18	27.8%	0	-	-	-	-	-
AZU1	566	genome.wustl.edu	37	19	827869	827869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001700.3	+1	reviewed	p.A8V	0.080	10	0%	11	45.5%	0	-	unknown(0)	tolerated(1)	-	NULL
C19orf26	255057	genome.wustl.edu	37	19	1235827	1235827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152769.2	-1	validated	p.V60I	0.003	24	0%	27	37%	3	66.6%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
BTBD2	55643	genome.wustl.edu	37	19	1987252	1987252	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017797.3	-1	reviewed	p.R394	1.000	90	0%	56	16.1%	58	5.1%	-	-	-	HMMPfam_PHR
TIMM13	26517	genome.wustl.edu	37	19	2427447	2427447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012458.2	-1	reviewed	p.Q29K	1.000	32	0%	20	70%	233	51.5%	benign(0.334)	deleterious(0.03)	deleterious(0.469)	HMMPfam_zf-Tim10_DDP
RANBP3	8498	genome.wustl.edu	37	19	5957961	5957961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007322.2	-1	reviewed	p.V16I	1.000	235	0%	148	50.7%	7	42.8%	benign(0.227)	deleterious(0)	neutral(0.467)	NULL
KHSRP	8570	genome.wustl.edu	37	19	6420483	6420483	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003685.2	-1	validated	e5-1	1.000	59	0%	35	51.4%	1	100%	-	-	-	-
INSR	3643	genome.wustl.edu	37	19	7143037	7143037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000208.2	-1	reviewed	p.A778T	0.072	23	0%	16	68.8%	1	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMSmart_SM00060,superfamily_Fibronectin type III
LRRC8E	80131	genome.wustl.edu	37	19	7963687	7963687	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_025061.3	+1	validated	p.L94	0.961	80	0%	45	15.6%	1	0%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9049897	9049897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_024690.2	-1	validated	p.E10578D	0.000	301	0%	188	16%	0	-	unknown(0)	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11347060	11347060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020812.2	-1	validated	p.R785H	0.000	17	0%	18	44.4%	2	50%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
ZNF627	199692	genome.wustl.edu	37	19	11728497	11728497	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_145295.3	+1	validated	p.C393	0.363	98	0%	62	58.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MIR24-2	407013	genome.wustl.edu	37	19	13947127	13947127	+	RNA	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000386972	-1	known	NULL	0.035	26	0%	12	66.7%	0	-	-	-	-	-
ENSG00000233422	0	genome.wustl.edu	37	19	14857188	14857190	+	RNA	DEL	TTT	TTT	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000430444	+1	known	NULL	0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	-
PGLYRP2	114770	genome.wustl.edu	37	19	15586781	15586781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_052890.3	-1	validated	p.G234C	0.000	25	0%	23	47.8%	0	-	possibly_damaging(0.93)	tolerated(0.08)	deleterious(0.676)	NULL
CIB3	117286	genome.wustl.edu	37	19	16272290	16272290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_054113.2	-1	reviewed	p.H184N	1.000	119	0%	65	53.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_EF-hand
GRAMD1A	57655	genome.wustl.edu	37	19	35506795	35506795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020895.3	+1	validated	p.G379	0.008	46	0%	35	42.9%	60	41.6%	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36211366	36211366	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014727.1	+1	reviewed	p.E373*	0.011	40	0%	22	45.5%	0	-	-	-	-	NULL
MAP4K1	11184	genome.wustl.edu	37	19	39092105	39092105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007181.4	-1	validated	p.A503T	0.460	54	0%	31	54.8%	1	0%	probably_damaging(0.99)	tolerated(0.61)	neutral(0.446)	HMMPfam_CNH,HMMSmart_CNH
ENSG00000229113	0	genome.wustl.edu	37	19	42027683	42027683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000439847	-1	known	p.R201C	0.900	109	0%	110	52.7%	0	-	-	-	-	NULL
CEACAM3	1084	genome.wustl.edu	37	19	42314041	42314041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001815.2	+1	reviewed	p.Q194R	0.004	66	0%	41	41.5%	0	-	unknown(0)	deleterious(0.02)	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42486224	42486224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_152296.3	-1	reviewed	p.R343Q	0.996	98	0%	44	50%	0	-	possibly_damaging(0.844)	tolerated(0.15)	deleterious(0.565)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
IRGQ	126298	genome.wustl.edu	37	19	44097207	44097207	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001007561.2	-1	validated	p.H281	0.000	30	0%	21	57.1%	1	100%	-	-	-	NULL
MARK4	57787	genome.wustl.edu	37	19	45790815	45790815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_031417.2	+1	provisional	p.G463W	0.989	19	0%	12	66.7%	13	23%	unknown(0)	deleterious(0)	-	NULL
CD3EAP	10849	genome.wustl.edu	37	19	45912718	45912718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_012099.1	+1	validated	p.R498W	0.002	31	0%	43	48.8%	15	6.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PLA2G4C	8605	genome.wustl.edu	37	19	48556390	48556390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003706.2	-1	reviewed	p.W482R	0.002	137	0%	84	47.6%	0	-	possibly_damaging(0.85)	tolerated(0.2)	neutral(0.376)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
FUT1	2523	genome.wustl.edu	37	19	49253822	49253822	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000148.3	-1	reviewed	p.S239	0.000	25	0%	20	65%	0	-	-	-	-	HMMPfam_Glyco_transf_11
NLRP7	199713	genome.wustl.edu	37	19	55450565	55450565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001127255.1	-1	reviewed	p.R541Q	0.000	65	0%	49	51%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
PTPRH	5794	genome.wustl.edu	37	19	55711614	55711614	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002842.3	-1	validated	p.S470	0.000	169	0%	102	53.9%	1	0%	-	-	-	superfamily_Fibronectin type III
ENSG00000197025	0	genome.wustl.edu	37	19	56888974	56888974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000356456	+1	known	p.R120M	0.980	32	0%	24	45.8%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57931985	57931985	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006959.2	+1	validated	p.I375	0.114	166	0%	110	39.1%	3	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288507	100288507	genome.wustl.edu	37	19	57956445	57956445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	XM_002343700.1	-1	model	p.T99A	0.000	143	0%	95	47.4%	1	0%	-	-	-	NULL
ZNF416	55659	genome.wustl.edu	37	19	58084047	58084047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017879.1	-1	provisional	p.P409T	0.202	150	0%	104	43.3%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF57667
ANGPT4	51378	genome.wustl.edu	37	20	853749	853749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015985.2	-1	reviewed	p.A456T	1.000	41	0%	26	61.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fibrinogen_C,HMMSmart_FBG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C
SIGLEC1	6614	genome.wustl.edu	37	20	3674174	3674174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_023068.3	-1	reviewed	p.D1143G	0.868	13	0.000	6	0.667	0	-	benign(0.313)	tolerated(0.07)	neutral(0.416)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
JAG1	182	genome.wustl.edu	37	20	10621506	10621506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000214.2	-1	reviewed	p.R1042C	1.000	172	0%	143	41.3%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
BPIFB4	149954	genome.wustl.edu	37	20	31671634	31671634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_182519.2	+1	validated	p.V211M	0.722	43	0%	26	38.5%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328
NCOA6	23054	genome.wustl.edu	37	20	33328275	33328275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014071.2	-1	reviewed	p.A1929T	0.001	71	0%	41	46.3%	21	28.5%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
ERGIC3	51614	genome.wustl.edu	37	20	34130084	34130084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_198398.1	+1	validated	p.S34N	1.000	56	0%	24	62.5%	47	46.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ERGIC3	51614	genome.wustl.edu	37	20	34130292	34130292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_198398.1	+1	validated	p.R64W	0.985	50	0%	42	40.5%	96	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPN2	6185	genome.wustl.edu	37	20	35857117	35857117	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000456400	+1	known	p.H13N	0.656	77	0%	63	55.6%	89	46%	-	-	-	HMMPfam_Ribophorin_II
L3MBTL1	26013	genome.wustl.edu	37	20	42159442	42159442	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015478.5	+1	reviewed	p.Y309	1.000	37	0%	28	46.4%	0	-	-	-	-	HMMPfam_MBT,superfamily_Tudor/PWWP/MBT
WFDC12	128488	genome.wustl.edu	37	20	43752868	43752868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_080869.1	-1	reviewed	p.R40C	0.000	73	0%	55	36.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP
ARFGEF2	10564	genome.wustl.edu	37	20	47621707	47621707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006420.2	+1	reviewed	p.R1178H	1.000	234	0%	149	43.6%	2	50%	possibly_damaging(0.454)	tolerated(0.13)	neutral(0.401)	HMMPfam_DUF1981,superfamily_ARM-type_fold
TPD52L2	7165	genome.wustl.edu	37	20	62518951	62518951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_199360.1	+1	validated	p.A180T	0.973	58	0%	36	66.7%	0	-	possibly_damaging(0.645)	tolerated(0.18)	neutral(0.282)	HMMPfam_TPD52
PCNT	5116	genome.wustl.edu	37	21	47786729	47786729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_006031.5	+1	reviewed	p.A947V	0.495	19	0%	20	60%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CECR2	27443	genome.wustl.edu	37	22	17978493	17978493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000400573	+1	known	p.G131W	1.000	143	0%	92	42.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HIRA	7290	genome.wustl.edu	37	22	19349398	19349398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003325.3	-1	reviewed	p.S611N	1.000	125	0%	81	40.7%	3	33.3%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26165109	26165109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032608.5	+1	reviewed	p.R409Q	0.000	64	0%	39	48.7%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26228934	26228934	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_032608.5	+1	reviewed	p.T1010	0.618	121	0%	72	55.6%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
EWSR1	2130	genome.wustl.edu	37	22	29668384	29668384	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005243.3	+1	reviewed	p.T22	0.997	393	0%	325	50.2%	31	35.4%	-	-	-	NULL
TCN2	6948	genome.wustl.edu	37	22	31010334	31010334	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000355.3	+1	reviewed	e4-2	0.962	42	0%	23	47.8%	0	-	-	-	-	-
ELFN2	114794	genome.wustl.edu	37	22	37771567	37771567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_052906.3	-1	validated	p.R3H	1.000	31	0%	17	29.4%	0	-	unknown(0)	deleterious(0)	-	NULL
CACNA1I	8911	genome.wustl.edu	37	22	40045817	40045817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_021096.3	+1	reviewed	p.R627W	0.090	17	0%	11	45.5%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_Voltage-gated potassium channels
TNRC6B	23112	genome.wustl.edu	37	22	40658007	40658007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015088.2	+1	validated	p.R96H	1.000	12	0%	13	46.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40697177	40697179	+	In_Frame_Del	DEL	GCA	GCA	-	rs71764365	byCluster;by1000genomes	TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015088.2	+1	validated	p.Q1214in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TOB2	10766	genome.wustl.edu	37	22	41832535	41832537	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016272.3	-1	validated	p.F272in_frame_del	0.994:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42610373	42610373	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005650.1	-1	reviewed	p.Q313	1.000	58	0%	65	55.4%	0	-	-	-	-	NULL
PACSIN2	11252	genome.wustl.edu	37	22	43278237	43278237	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007229.3	-1	reviewed	p.R287*	0.998	66	0%	42	42.9%	3	0%	-	-	-	NULL
SHOX	6473	genome.wustl.edu	37	X	591832	591832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_000451.3	+1	reviewed	p.P67Q	1.000	86	0%	51	47.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ZBED1	9189	genome.wustl.edu	37	X	2407462	2407462	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004729.3	-1	reviewed	p.T433	0.814	89	0%	56	55.4%	6	66.6%	-	-	-	NULL
VCX2	51480	genome.wustl.edu	37	X	8138093	8138093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_016378.2	-1	reviewed	p.V134I	0.000	118	0%	61	41%	0	-	unknown(0)	tolerated(0.07)	-	NULL
DCAF8L2	347442	genome.wustl.edu	37	X	27766900	27766900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001136533.1	+1	provisional	p.P630T	0.917	23	0%	15	33.3%	0	-	-	-	-	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27998727	27998727	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001017930.1	-1	reviewed	p.V242G	1.000	44	0%	38	15.8%	0	-	benign(0.081)	deleterious(0)	neutral(0.451)	HMMSmart_WD40,superfamily_WD40_like
ZNF674	641339	genome.wustl.edu	37	X	46359381	46359381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001039891.2	-1	validated	p.T548I	1.000	341	0%	278	45.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF57667
WDR45	11152	genome.wustl.edu	37	X	48933229	48933229	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_007075.3	-1	reviewed	p.G235R	1.000	57	0%	49	59.2%	116	93.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like
GPKOW	27238	genome.wustl.edu	37	X	48979897	48979897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_015698.4	-1	validated	p.S59I	1.000	42	0%	18	38.9%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
SYP	6855	genome.wustl.edu	37	X	49049896	49049896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003179.2	-1	reviewed	p.A150T	0.899	67	0%	53	45.3%	0	-	benign(0.017)	tolerated(0.73)	neutral(0.002)	HMMPfam_MARVEL
WNK3	65267	genome.wustl.edu	37	X	54337624	54337624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020922.4	-1	reviewed	p.W213L	1.000	352	0%	231	46.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
APEX2	27301	genome.wustl.edu	37	X	55028000	55028000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014481.2	+1	reviewed	p.L60P	0.968	86	0%	49	46.9%	3	100%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
PJA1	64219	genome.wustl.edu	37	X	68382140	68382140	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_145119.3	-1	reviewed	p.S314	0.003	60	0%	45	42.2%	3	66.6%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70608189	70608189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_004606.3	+1	reviewed	p.R864W	1.000	90	0%	51	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PABPC5	140886	genome.wustl.edu	37	X	90691667	90691667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_080832.2	+1	reviewed	p.R364H	0.992	30	0%	33	48.5%	1	0%	possibly_damaging(0.5)	deleterious(0.02)	deleterious(0.550)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
LRCH2	57631	genome.wustl.edu	37	X	114468376	114468376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020871.3	-1	validated	p.V77M	0.685	32	0%	25	40%	0	-	possibly_damaging(0.852)	tolerated(0.1)	deleterious(0.614)	superfamily_SSF52058
NKRF	55922	genome.wustl.edu	37	X	118723850	118723850	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_017544.3	-1	reviewed	p.K513T	1.000	159	0%	136	47.1%	1	100%	possibly_damaging(0.923)	tolerated(0.19)	neutral(0.422)	superfamily_dsRNA-binding domain-like
ODZ1	10178	genome.wustl.edu	37	X	124029856	124029856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_014253.3	-1	reviewed	p.H151R	1.000	239	0%	187	42.2%	0	-	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	HMMPfam_Ten_N
XPNPEP2	7512	genome.wustl.edu	37	X	128884476	128884476	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003399.5	+1	reviewed	p.R224*	0.989	67	0%	53	60.4%	0	-	-	-	-	NULL
MBNL3	55796	genome.wustl.edu	37	X	131540344	131540344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_018388.3	-1	reviewed	p.R85Q	0.786	172	0%	97	50.5%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
FAM122C	159091	genome.wustl.edu	37	X	133988177	133988177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	ENST00000370784	+1	known	p.R167C	0.018	271	0%	189	50.8%	2	0%	benign(0.119)	deleterious(0)	neutral(0.454)	NULL
BRS3	680	genome.wustl.edu	37	X	135574248	135574248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001727.1	+1	validated	p.S305F	0.998	326	0%	176	44.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
RBMX	27316	genome.wustl.edu	37	X	135961586	135961588	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_002139.3	-1	reviewed	p.MVEA1in_frame_delWLK	1.000	-	-	-	-	-	-	-	-	-	NULL
ZIC3	7547	genome.wustl.edu	37	X	136651134	136651134	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_003413.3	+1	reviewed	p.H378	1.000	79	0%	43	41.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ATP11C	286410	genome.wustl.edu	37	X	138871620	138871621	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_173694.4	-1	validated	p.G415fs	1.000:0.973	-	-	-	-	-	-	-	-	-	PatternScan_ATPASE_E1_E2,superfamily_HAD-like
PLXNB3	5365	genome.wustl.edu	37	X	153037425	153037425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_005393.2	+1	reviewed	p.S875N	0.875	24	0.000	9	0.667	0	-	benign(0.007)	tolerated(0.12)	neutral(0.261)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
OPN1LW	5956	genome.wustl.edu	37	X	153416295	153416295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_020061.4	+1	reviewed	p.N94D	1.000	106	0%	59	35.6%	0	-	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	HMMPfam_7tm_1,superfamily_SSF81321
ATP6AP1	537	genome.wustl.edu	37	X	153663795	153663797	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AP-A0LE-01A-11D-A127-09	TCGA-AP-A0LE-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	638e80c7-9a6e-4a32-a621-fc4168e72343	e37d65e5-ff01-4a16-a3ec-a2331fc26943	NM_001183.4	+1	reviewed	p.L384in_frame_del	0.975:0.998:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ATP-synt_S1
