Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
APC	324	genome.wustl.edu	37	5	112177283	112177283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	5	112177283	112177283	G	A	SNP	APC	NM_000038.4	human	genbank	58_37c	+1	reviewed	missense	c.5992	p.E1998K	1.000	NULL	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat	-	no_errors
ARHGAP26	23092	genome.wustl.edu	37	5	142150475	142150475	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	5	142150475	142150475	T	C	SNP	ARHGAP26	NM_015071.4	human	genbank	58_37c	+1	reviewed	missense	c.149	p.L50P	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,PatternScan_IG_MHC,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
CARD16	114769	genome.wustl.edu	37	11	104915136	104915136	+	Missense_Mutation	SNP	G	G	A	rs148140246	by1000genomes	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	11	104915136	104915136	G	A	SNP	CARD16	NM_001017534.1	human	genbank	58_37c	-1	validated	missense	c.257	p.T86M	0.000	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain	-	no_errors
ENSG00000246026	0	genome.wustl.edu	37	18	43668334	43668334	+	RNA	SNP	A	A	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	18	43668334	43668334	A	T	SNP	ATP5A1	NM_001001937.1	human	genbank	58_37c	-1	reviewed	intronic	c.651-111	e6-111	0.569	-	-	-	no_errors
HIATL2	84278	genome.wustl.edu	37	9	99711835	99711835	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	9	99711835	99711835	A	T	SNP	HIATL2	ENST00000375223	human	ensembl	58_37c	-1	known	splice_site	c.395+2	e4+2	1.000	-	-	-	no_errors
KDM4A	9682	genome.wustl.edu	37	1	44137307	44137307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	1	44137307	44137307	C	T	SNP	KDM4A	NM_014663.2	human	genbank	58_37c	+1	reviewed	missense	c.1495	p.L499F	0.950	NULL	HMMSmart_SM00249,HMMSmart_SM00333,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC100289074	0	genome.wustl.edu	37	17	81083247	81083247	+	Missense_Mutation	SNP	G	G	A	rs183594130	by1000genomes	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	17	81083247	81083247	G	A	SNP	LOC100289074	XM_002343591.1	human	genbank	58_37c	+1	model	missense	c.1144	p.D382N	0.024	NULL	NULL	-	no_errors
MAGIX	79917	genome.wustl.edu	37	X	49021218	49021218	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	X	49021218	49021218	A	T	SNP	MAGIX	NM_024859.2	human	genbank	58_37c	+1	validated	silent	c.297	p.T99	0.000	superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
MIR486	0	genome.wustl.edu	37	8	41517976	41517976	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	8	41517976	41517976	G	T	SNP	MIR486	ENST00000408108	human	ensembl	58_37c	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
PDCD6IP	10015	genome.wustl.edu	37	3	33855109	33855109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	3	33855109	33855109	C	T	SNP	PDCD6IP	NM_013374.4	human	genbank	58_37c	+1	validated	missense	c.323	p.S108F	1.000	HMMPfam_BRO1	HMMPfam_BRO1	-	no_errors
PHACTR3	116154	genome.wustl.edu	37	20	58322833	58322833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	20	58322833	58322833	G	A	SNP	PHACTR3	NM_080672.3	human	genbank	58_37c	+1	reviewed	missense	c.301	p.G101S	0.037	HMMSmart_SM00707	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
PRKD2	25865	genome.wustl.edu	37	19	47204110	47204110	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	47204110	47204110	T	C	SNP	PRKD2	NM_001079880.1	human	genbank	58_37c	-1	reviewed	missense	c.1067	p.E356G	0.854	NULL	HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
RGPD3	653489	genome.wustl.edu	37	2	107041128	107041128	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	2	107041128	107041128	G	A	SNP	RGPD3	NM_001144013.1	human	genbank	58_37c	-1	validated	silent	c.3295	p.L1099	1.000	HMMPfam_Ran_BP1,superfamily_SSF50729	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,HMMPfam_TPR_1,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
SLC1A6	6511	genome.wustl.edu	37	19	15063812	15063812	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	15063812	15063812	A	G	SNP	SLC1A6	NM_005071.1	human	genbank	58_37c	-1	provisional	missense	c.1427	p.M476T	1.000	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64557671	64557671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	14	64557671	64557671	A	G	SNP	SYNE2	NM_182914.2	human	genbank	58_37c	+1	reviewed	missense	c.11881	p.M3961V	0.003	NULL	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin	-	no_errors
ZNF565	147929	genome.wustl.edu	37	19	36673496	36673496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	36673496	36673496	G	A	SNP	ZNF565	NM_001042474.1	human	genbank	58_37c	-1	validated	missense	c.1372	p.R458C	0.007	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
