Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CDK10	0	genome.wustl.edu	37	16	89758243	89758243	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	89758243	89758243	A	G	SNP	CDK10	NM_052988.4	human	genbank	58_37c	+1	reviewed	missense	c.365	p.Q122R	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CX3CL1	0	genome.wustl.edu	37	16	57413659	57413659	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	57413659	57413659	G	A	SNP	CX3CL1	NM_002996.3	human	genbank	58_37c	+1	provisional	missense	c.184	p.A62T	0.797	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	-	no_errors
DDR2	0	genome.wustl.edu	37	1	162731140	162731140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	1	162731140	162731140	G	A	SNP	DDR2	NM_001014796.1	human	genbank	58_37c	+1	reviewed	missense	c.995	p.R332Q	1.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,PatternScan_PROTEIN_KINASE_TYR,superfamily_Gal_bind_like,superfamily_Kinase_like	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380238	42380238	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	10	42380238	42380238	C	G	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	missense	c.24	p.W8C	0.000	NULL	NULL	-	no_stop_codon
ENSG00000251705	0	genome.wustl.edu	37	Y	10037856	10037856	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	Y	10037856	10037856	G	A	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233655500	233655500	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	2	233655500	233655500	C	T	SNP	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	nonsense	c.871	p.R291*	1.000	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152186837	152186837	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	1	152186837	152186837	C	T	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.7268	p.R2423Q	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
KRTAP10-7	0	genome.wustl.edu	37	21	46020656	46020670	+	In_Frame_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	21	46020656	46020670	CTGCTGCGCCCCCAG	-	DEL	KRTAP10-7	ENST00000380102	human	ensembl	58_37c	+1	known	in_frame_del	c.135_149	p.PSCCA49in_frame_del	0.132:0.261:0.989:1.000:1.000:0.990:0.713:0.752:0.994:0.999:1.000:1.000:1.000:0.996:0.995	NULL	HMMPfam_Keratin_B2	-	no_errors
LOC100132672	0	genome.wustl.edu	37	9	69502164	69502164	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	9	69502164	69502164	G	A	SNP	LOC100132672	XR_038504.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.996	-	-	-	pseudogene
LOC100286908	0	genome.wustl.edu	37	15	32885731	32885731	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	15	32885731	32885731	C	A	SNP	LOC100286908	XR_078502.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.005	-	-	-	pseudogene
MED15	0	genome.wustl.edu	37	22	20920813	20920814	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	22	20920813	20920814	-	CAG	INS	MED15	NM_001003891.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.750_751	p.254in_frame_insQ	0.993:0.998	NULL	HMMPfam_ARC105_Med_act	-	no_errors
MEOX2	0	genome.wustl.edu	37	7	15725798	15725800	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	7	15725798	15725800	TGG	-	DEL	MEOX2	NM_005924.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.230_228	p.H80in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
MYH2	0	genome.wustl.edu	37	17	10428881	10428881	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	17	10428881	10428881	G	A	SNP	MYH2	NM_001100112.1	human	genbank	58_37c	-1	reviewed	missense	c.4424	p.A1475V	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279815	46279823	+	In_Frame_Del	DEL	GCAGCAGCA	GCAGCAGCA	-	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	GCAGCAGCA	GCAGCAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	20	46279815	46279823	GCAGCAGCA	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3741_3749	p.QQQ1251in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279834	46279836	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	20	46279834	46279836	CAA	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3760_3762	p.Q1257in_frame_del	0.527:0.539:0.525	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NUDT11	0	genome.wustl.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	X	51239296	51239309	TCCTCGAGGCAGCC	-	DEL	NUDT11	ENST00000375992	human	ensembl	58_37c	-1	known	frame_shift_del	c.1	p.M1fs	0.928	NULL	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX	-	no_errors
PRB1	0	genome.wustl.edu	37	12	11506464	11506464	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	12	11506464	11506464	C	T	SNP	PRB1	NM_005039.3	human	genbank	58_37c	-1	reviewed	silent	c.573	p.Q191	0.000	NULL	NULL	-	pseudogene
RRN3P2	0	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	16	29110458	29110458	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	58_37c	+1	known	missense	c.1123	p.W375R	0.991	HMMPfam_RRN3	HMMPfam_RRN3	-	no_stop_codon
SDK1	0	genome.wustl.edu	37	7	4272965	4272965	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	7	4272965	4272965	G	A	SNP	SDK1	NM_152744.3	human	genbank	58_37c	+1	validated	missense	c.5906	p.R1969Q	0.825	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
TMF1	0	genome.wustl.edu	37	3	69072340	69072340	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	3	69072340	69072340	T	C	SNP	TMF1	NM_007114.2	human	genbank	58_37c	-1	validated	silent	c.3270	p.Q1090	0.616	NULL	NULL	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-AR-A252-01A-11D-A167-09	TCGA-AR-A252-10A-01D-A167-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e800d9b3-32a1-48eb-840b-9a3bec9d1f6e	6f509e3d-b8f5-45de-8915-56c7759e3951	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
