Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
IGSF21	84966	genome.wustl.edu	37	1	18691718	18691718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_032880.3	+1	validated	p.V181G	1.000	15	0%	10	40%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF48726
RPTN	126638	genome.wustl.edu	37	1	152128310	152128310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001122965.1	-1	validated	p.G422D	0.000	660	0%	769	39.3%	-	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247040296	247040296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_015446.4	-1	validated	p.V965L	0.994	167	0%	203	28.1%	-	-	benign(0.104)	deleterious(0.04)	neutral(0.357)	NULL
NEB	4703	genome.wustl.edu	37	2	152511861	152511861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_004543.4	-1	reviewed	p.D2244Y	1.000	291	0%	258	33.7%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Nebulin
ANKMY1	51281	genome.wustl.edu	37	2	241468496	241468496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_016552.2	-1	validated	p.T215N	1.000	203	0%	160	41.2%	-	-	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4774832	4774832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001099952.2	+1	reviewed	p.R1713G	1.000	138	0%	91	24.2%	-	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
C3orf35	339883	genome.wustl.edu	37	3	37458905	37458905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_178339.2	+1	validated	p.R50W	0.001	171	0%	115	34.8%	-	-	benign(0.227)	-	-	NULL
KLHL18	23276	genome.wustl.edu	37	3	47385136	47385136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_025010.4	+1	validated	p.S477N	1.000	47	0%	26	38.5%	-	-	possibly_damaging(0.513)	tolerated(0.35)	neutral(0.193)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
WNT5A	7474	genome.wustl.edu	37	3	55504336	55504336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_003392.3	-1	reviewed	p.C309W	0.998	58	0%	46	15.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
MITF	4286	genome.wustl.edu	37	3	69928461	69928461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_198159.2	+1	reviewed	p.Q94P	1.000	70	0%	57	29.8%	-	-	probably_damaging(0.983)	tolerated(0.19)	deleterious(0.478)	NULL
LPHN3	23284	genome.wustl.edu	37	4	62812764	62812764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	ENST00000502815	+1	known	p.Y240*	1.000	216	0%	193	13.5%	-	-	benign(0.146)	deleterious(0.01)	neutral(0.418)	superfamily_Family A G protein-coupled receptor-like
FBXW7	55294	genome.wustl.edu	37	4	153253747	153253747	+	Splice_Site	DEL	C	C	-	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_033632.2	-1	reviewed	e5+1	1.000	-	-	-	-	-	-	-	-	-	-
ZFYVE16	9765	genome.wustl.edu	37	5	79747382	79747382	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001105251.1	+1	validated	p.F1154C	1.000	265	0%	214	40.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RASA1	5921	genome.wustl.edu	37	5	86629152	86629152	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_002890.1	+1	reviewed	p.S300fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain
PCDHGA3	56112	genome.wustl.edu	37	5	140724410	140724410	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_018916.3	+1	reviewed	p.D270	0.064	60	0%	40	42.5%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ENSG00000229119	0	genome.wustl.edu	37	5	165809378	165809378	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	ENST00000449646	+1	known	p.I23	1.000	55	0%	68	13.2%	-	-	-	-	-	HMMPfam_Ribosomal_60s
PKD1L1	168507	genome.wustl.edu	37	7	47835642	47835642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_138295.2	-1	reviewed	p.T2767I	0.000	263	0%	195	43.6%	-	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112407663	112407663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_022484.4	-1	validated	p.D561E	0.998	129	0%	130	45.4%	-	-	possibly_damaging(0.918)	tolerated(0.43)	neutral(0.382)	NULL
PTN	5764	genome.wustl.edu	37	7	136939627	136939627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_002825.5	-1	validated	p.A32S	1.000	183	0%	123	36.6%	-	-	benign(0.256)	tolerated(0.1)	neutral(0.313)	NULL
EPHX2	2053	genome.wustl.edu	37	8	27361218	27361218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001979.4	+1	reviewed	p.A95V	0.000	38	0%	38	50%	-	-	benign(0.051)	tolerated(0.4)	neutral(0.019)	HMMPfam_Hydrolase,superfamily_SSF56784
ENSG00000213003	0	genome.wustl.edu	37	8	71185743	71185746	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	ENST00000391685	+1	known	p.K46fs	0.998:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_NAC
CSMD3	114788	genome.wustl.edu	37	8	113364727	113364727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_198123.1	-1	validated	p.P2058H	1.000	181	0%	115	28.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
EPPK1	83481	genome.wustl.edu	37	8	144946612	144946612	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_031308.1	-1	validated	p.D270	0.001	10	0.000	9	0.778	-	-	-	-	-	superfamily_Plakin repeat
TLR4	7099	genome.wustl.edu	37	9	120475396	120475396	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_138554.3	+1	reviewed	p.F330	0.000	63	0%	70	34.3%	-	-	-	-	-	superfamily_L domain-like
GPR21	2844	genome.wustl.edu	37	9	125797430	125797430	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_005294.1	+1	provisional	p.I195	0.994	128	0%	92	13%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARID5B	84159	genome.wustl.edu	37	10	63851073	63851073	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_032199.2	+1	validated	p.P617	0.140	57	0%	51	52.9%	-	-	-	-	-	NULL
KIAA0913	23053	genome.wustl.edu	37	10	75558185	75558185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_015037.2	+1	validated	p.R1384W	1.000	73	0%	59	35.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DUPD1	338599	genome.wustl.edu	37	10	76797716	76797716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001003892.1	-1	provisional	p.R181C	1.000	52	0%	36	13.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
OPN4	94233	genome.wustl.edu	37	10	88417837	88417837	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001030015.2	+1	validated	p.A124	0.001	178	0%	203	65%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NELL1	4745	genome.wustl.edu	37	11	21555947	21555947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_006157.3	+1	reviewed	p.I558T	1.000	201	0%	202	51.5%	-	-	benign(0.023)	tolerated(0.45)	neutral(0.013)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
FOLH1	2346	genome.wustl.edu	37	11	49221914	49221914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_004476.1	-1	reviewed	p.E102Q	1.000	248	0%	271	32.1%	-	-	benign(0.249)	tolerated(0.16)	neutral(0.085)	NULL
ALG10	84920	genome.wustl.edu	37	12	34177007	34177007	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_032834.3	+1	reviewed	p.G94	0.974	480	0%	466	11.2%	-	-	-	-	-	HMMPfam_DIE2_ALG10
TMEM132D	121256	genome.wustl.edu	37	12	130184694	130184694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_133448.2	-1	validated	p.A210V	0.883	42	0%	21	38.1%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
LOC341689	341689	genome.wustl.edu	37	13	59103249	59103249	+	RNA	SNP	G	G	A	rs139861067	by1000genomes	TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	XR_017487.3	+1	model	NULL	0.476	137	0%	132	34.1%	-	-	-	-	-	-
NAA30	122830	genome.wustl.edu	37	14	57876144	57876144	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001011713.2	+1	validated	p.Y333*	1.000	154	0%	158	32.9%	-	-	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
RBM25	58517	genome.wustl.edu	37	14	73554760	73554760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_021239.2	+1	validated	p.R145T	1.000	168	0%	199	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CLMN	79789	genome.wustl.edu	37	14	95669923	95669923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_024734.3	-1	validated	p.E588G	0.007	202	0%	207	35.7%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
ZFAND6	54469	genome.wustl.edu	37	15	80429841	80429841	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_019006.2	+1	provisional	p.G166	1.000	202	0%	197	35.5%	-	-	-	-	-	HMMPfam_zf-AN1,HMMSmart_SM00154
MPG	4350	genome.wustl.edu	37	16	129496	129496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_002434.2	+1	validated	p.A38T	0.023	55	0%	45	11.1%	-	-	benign(0.164)	tolerated(0.14)	neutral(0.265)	NULL
TRIM72	493829	genome.wustl.edu	37	16	31235527	31235527	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001008274.3	+1	validated	p.P295	0.035	25	0%	17	70.6%	-	-	-	-	-	HMMSmart_SM00589
CDH13	1012	genome.wustl.edu	37	16	83065765	83065765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001257.3	+1	reviewed	p.A103V	0.936	110	0%	37	67.6%	-	-	benign(0.101)	tolerated(0.33)	neutral(0.032)	HMMPfam_Cadherin_pro,superfamily_Cadherin
TP53	7157	genome.wustl.edu	37	17	7577105	7577106	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_000546.4	-1	reviewed	p.P278fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
SHISA6	388336	genome.wustl.edu	37	17	11459147	11459147	+	Missense_Mutation	SNP	C	C	T	rs185956842	by1000genomes	TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_207386.3	+1	validated	p.P348L	1.000	162	0.6%	101	62.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CEACAM1	634	genome.wustl.edu	37	19	43031527	43031527	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001712.4	-1	reviewed	p.P30	0.000	240	0%	357	38.7%	-	-	-	-	-	HMMPfam_V-set
LAMP5	24141	genome.wustl.edu	37	20	9496993	9496993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_012261.2	+1	validated	p.K154E	1.000	73	0%	70	18.6%	-	-	possibly_damaging(0.623)	tolerated(0.98)	neutral(0.217)	HMMPfam_Lamp
SRMS	6725	genome.wustl.edu	37	20	62173616	62173616	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_080823.2	-1	provisional	p.H282	0.995	96	0%	94	30.9%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PARVG	64098	genome.wustl.edu	37	22	44583758	44583758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001137605.1	+1	validated	p.Q83*	1.000	155	0%	58	41.4%	-	-	-	-	-	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
RS1	6247	genome.wustl.edu	37	X	18690186	18690186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_000330.3	-1	reviewed	p.M1I	1.000	148	0%	108	32.4%	-	-	unknown(0)	deleterious(0)	-	NULL
EFHC2	80258	genome.wustl.edu	37	X	44171993	44171993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	ENST00000333807	-1	known	p.E18Q	1.000	140	0%	124	13.7%	-	-	possibly_damaging(0.916)	tolerated(0.27)	neutral(0.400)	NULL
GATA1	2623	genome.wustl.edu	37	X	48651670	48651670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_002049.3	+1	reviewed	p.C279F	1.000	99	0%	59	23.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
UPRT	139596	genome.wustl.edu	37	X	74516200	74516200	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_145052.3	+1	reviewed	p.G151	0.996	212	0.5%	211	34.1%	-	-	unknown(0)	-	-	superfamily_PRTase-like
AMOT	154796	genome.wustl.edu	37	X	112059079	112059079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_001113490.1	-1	reviewed	p.L300fs	0.092	-	-	-	-	-	-	-	-	-	NULL
LAMP2	3920	genome.wustl.edu	37	X	119573032	119573032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_013995.2	-1	reviewed	p.Y404H	1.000	203	0%	165	32.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Lamp
ENSG00000184785	0	genome.wustl.edu	37	X	134125220	134125220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	ENST00000330288	+1	known	p.P110Q	0.001	34	0%	22	18.2%	-	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
MIR891B	100126304	genome.wustl.edu	37	X	145082599	145082599	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	ENST00000401245	-1	known	NULL	0.000	265	0.4%	213	39%	-	-	-	-	-	-
PLXNB3	5365	genome.wustl.edu	37	X	153034623	153034623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_005393.2	+1	reviewed	p.R468W	0.071	62	0%	36	22.2%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Sema
NAA10	8260	genome.wustl.edu	37	X	153199858	153199858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0IU-01A-11D-A10B-09	TCGA-AX-A0IU-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3ea4951a-a8b6-4685-a53e-06a642856f0d	0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0	NM_003491.2	-1	provisional	p.Y31C	1.000	168	0%	110	41.8%	-	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	superfamily_Acyl_CoA_acyltransferase
