Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ACTL8	81569	genome.wustl.edu	37	1	18149646	18149646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_030812.2	+1	validated	p.R48H	0.000	94	0%	88	50%	0	-	possibly_damaging(0.504)	deleterious(0)	deleterious(0.613)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ARID1A	8289	genome.wustl.edu	37	1	27101054	27101054	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_006015.4	+1	reviewed	p.R1446*	1.000	127	0%	107	45.8%	6	33.3%	-	-	-	NULL
SYT6	148281	genome.wustl.edu	37	1	114680443	114680443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_205848.2	-1	validated	p.R164C	1.000	121	0%	126	46.8%	0	-	benign(0.392)	deleterious(0.01)	deleterious(0.531)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PLD5	200150	genome.wustl.edu	37	1	242263975	242263975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_152666.1	-1	provisional	p.Y358C	0.998	106	0%	115	28.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PLDc,HMMSmart_PLDc,superfamily_SSF56024
NLRP3	114548	genome.wustl.edu	37	1	247587260	247587260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001079821.2	+1	reviewed	p.R172H	0.164	53	0%	53	58.5%	0	-	possibly_damaging(0.93)	tolerated(0.13)	deleterious(0.629)	NULL
MIR663B	100313824	genome.wustl.edu	37	2	133014651	133014652	+	RNA	INS	-	-	C	rs111708138		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	ENST00000408361	-1	known	NULL	0.027:0.014	-	-	-	-	-	-	-	-	-	-
SNORA41	619569	genome.wustl.edu	37	2	207027036	207027039	+	RNA	DEL	TCTT	TCTT	-	rs35841485		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NR_002590.1	+1	validated	NULL	0.763:0.977:0.998:1.000	-	-	-	-	-	-	-	-	-	-
THRB	7068	genome.wustl.edu	37	3	24206735	24206735	+	Silent	SNP	G	G	A	rs143423077	by1000genomes	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	ENST00000280696	-1	known	p.S37	1.000	177	0%	262	62.6%	0	-	-	-	-	NULL
COL6A6	131873	genome.wustl.edu	37	3	130279233	130279233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001102608.1	+1	provisional	p.V9M	0.001	162	0%	224	29%	0	-	benign(0)	-	-	NULL
D4S234E	27065	genome.wustl.edu	37	4	4419143	4419143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001040101.1	+1	validated	p.A180E	1.000	137	0%	87	23%	41	46.3%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Calcyon
PCDH7	5099	genome.wustl.edu	37	4	30723196	30723196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_032457.3	+1	reviewed	p.V51A	1.000	16	0%	10	70%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMSmart_CA,HMMPfam_Cadherin_2
PRDM9	56979	genome.wustl.edu	37	5	23527761	23527761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_020227.2	+1	provisional	p.T855K	1.000	377	0%	283	33.9%	0	-	benign(0.375)	deleterious(0)	deleterious(0.564)	superfamily_SSF57667
C9	735	genome.wustl.edu	37	5	39341264	39341264	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001737.3	-1	reviewed	p.R154*	0.733	304	0%	274	44.9%	0	-	-	-	-	NULL
SLC38A9	153129	genome.wustl.edu	37	5	54965097	54965097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_173514.2	-1	validated	p.L162R	1.000	360	0%	371	41.2%	1	0%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Aa_trans
WDR36	134430	genome.wustl.edu	37	5	110438070	110438070	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_139281.2	+1	reviewed	p.W246*	1.000	135	0%	75	42.7%	0	-	-	-	-	HMMSmart_WD40,superfamily_Amine_DH_B_like
PCDH12	51294	genome.wustl.edu	37	5	141324955	141324956	+	In_Frame_Ins	INS	-	-	CTGCTGCTG	rs5871792	byCluster;by1000genomes	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_016580.2	-1	reviewed	p.1182in_frame_insSSS	0.176:0.994	-	-	-	-	-	-	-	-	-	NULL
SLC6A7	6534	genome.wustl.edu	37	5	149578837	149578837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_014228.3	+1	validated	p.G211R	1.000	20	0%	48	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
GPLD1	2822	genome.wustl.edu	37	6	24450073	24450073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001503.2	-1	reviewed	p.V464M	0.001	69	0%	69	47.8%	0	-	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
GMNN	51053	genome.wustl.edu	37	6	24784350	24784350	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_015895.3	+1	validated	p.E104Q	1.000	135	0%	76	48.7%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Geminin
DDX39B	7919	genome.wustl.edu	37	6	31508242	31508242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_004640.5	-1	reviewed	p.G23E	1.000	194	0%	198	22.7%	104	32.6%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
FAM83B	222584	genome.wustl.edu	37	6	54806576	54806576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001010872.1	+1	validated	p.R936H	1.000	171	0%	183	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLEKHG1	57480	genome.wustl.edu	37	6	151121930	151121942	+	Frame_Shift_Del	DEL	GAAACACTCGCTG	GAAACACTCGCTG	-	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	GAAACACTCGCTG	GAAACACTCGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001029884.1	+1	provisional	p.K236fs	0.247:0.278:0.244:0.165:1.000:1.000:1.000:1.000:0.998:0.223:0.926:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TAX1BP1	8887	genome.wustl.edu	37	7	27831733	27831733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_006024.5	+1	validated	p.V383L	0.981	111	0%	109	26.6%	51	31.3%	possibly_damaging(0.577)	tolerated(0.05)	deleterious(0.543)	HMMPfam_CALCOCO1
COBL	23242	genome.wustl.edu	37	7	51132909	51132909	+	Missense_Mutation	SNP	G	G	A	rs143548565	by1000genomes	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	ENST00000395540	-1	known	p.A445V	0.000	3	0.000	6	0.833	0	-	unknown(0)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82764904	82764904	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_033026.5	-1	validated	p.P654	0.127	81	0%	118	23.7%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100679598	100679598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001040105.1	+1	provisional	p.T1634I	0.149	500	0%	457	23.6%	0	-	unknown(0)	-	-	NULL
SOX17	64321	genome.wustl.edu	37	8	55372518	55372518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_022454.3	+1	reviewed	p.S403I	1.000	38	0%	38	28.9%	1261	32.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RP1	6101	genome.wustl.edu	37	8	55540383	55540383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_006269.1	+1	reviewed	p.A1314V	0.005	267	0%	293	27.3%	0	-	possibly_damaging(0.471)	deleterious(0)	deleterious(0.600)	NULL
WDYHV1	55093	genome.wustl.edu	37	8	124448775	124448775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_018024.1	+1	provisional	p.C106F	1.000	95	0%	99	35.4%	8	12.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_WDYHV
ZCCHC6	79670	genome.wustl.edu	37	9	88938049	88938049	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_024617.3	-1	validated	p.G872	0.000	237	0%	205	39%	4	25%	-	-	-	NULL
GABBR2	9568	genome.wustl.edu	37	9	101168378	101168378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_005458.7	-1	reviewed	p.F428V	1.000	121	0%	141	39.7%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_ANF_receptor,superfamily_SSF53822
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T	rs121909224	byCluster	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	ENST00000371953	+1	known	p.R130*	1.000	385	0%	312	83.7%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
RRAS2	22800	genome.wustl.edu	37	11	14316389	14316389	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_012250.5	-1	reviewed	p.Q72H	1.000	374	0.3%	568	62.3%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
APIP	51074	genome.wustl.edu	37	11	34904905	34904905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_015957.2	-1	validated	p.T203K	1.000	413	0%	550	59.5%	36	75%	possibly_damaging(0.515)	deleterious(0.01)	deleterious(0.579)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
LOC653111	653111	genome.wustl.edu	37	11	89773101	89773101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	XM_926073.2	+1	model	p.G277V	0.018	237	0%	333	15%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29642587	29642587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_183378.2	-1	validated	p.A223D	0.067	24	0%	18	50%	0	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
OTOGL	283310	genome.wustl.edu	37	12	80771721	80771721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	XM_002343203.1	+1	model	p.E2216K	1.000	45	0%	45	55.6%	0	-	benign(0.258)	tolerated(0.17)	neutral(0.086)	HMMSmart_SM00041
GNPTAB	79158	genome.wustl.edu	37	12	102164827	102164827	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_024312.4	-1	reviewed	p.E294*	1.000	359	0%	331	47.1%	1	0%	-	-	-	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126138655	126138655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_052907.2	+1	provisional	p.P879L	0.995	141	0%	143	35%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
FGF14	2259	genome.wustl.edu	37	13	102375314	102375314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_175929.2	-1	reviewed	p.A209D	1.000	192	0%	146	45.2%	0	-	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	superfamily_Cytok_IL1_like
THTPA	79178	genome.wustl.edu	37	14	24028255	24028255	+	RNA	SNP	G	G	A	rs139409555	by1000genomes	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NR_023314.1	+1	validated	NULL	1.000	5	0.000	9	0.667	32	40.6%	-	-	-	-
RNF31	55072	genome.wustl.edu	37	14	24621133	24621133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_017999.4	+1	validated	p.R688W	1.000	42	0%	55	27.3%	26	30.7%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
MAPK1IP1L	93487	genome.wustl.edu	37	14	55529627	55529648	+	Frame_Shift_Del	DEL	GCCCCAACTGTGCCGGGCCCTG	GCCCCAACTGTGCCGGGCCCTG	-	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	GCCCCAACTGTGCCGGGCCCTG	GCCCCAACTGTGCCGGGCCCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_144578.3	+1	validated	p.T106fs	1.000:1.000:1.000:1.000:1.000:0.479:0.101:0.544:0.528:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
TTC7B	145567	genome.wustl.edu	37	14	91007791	91007791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001010854.1	-1	provisional	p.T818M	1.000	22	0%	36	38.9%	22	36.3%	probably_damaging(0.985)	tolerated(0.05)	deleterious(0.777)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SLC28A2	9153	genome.wustl.edu	37	15	45561684	45561684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_004212.3	+1	validated	p.R506H	1.000	119	0%	135	46.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Nucleos_tra2_C
MYO5C	55930	genome.wustl.edu	37	15	52536565	52536565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_018728.2	-1	validated	p.Q793L	1.000	148	0%	105	38.1%	1	0%	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00015
ADAMTS7	11173	genome.wustl.edu	37	15	79058945	79058947	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_014272.3	-1	reviewed	p.A1104in_frame_del	0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88643606	88643606	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_144604.3	+1	validated	p.D25	0.028	28	0%	29	34.5%	3	33.3%	-	-	-	NULL
OR1A1	8383	genome.wustl.edu	37	17	3119592	3119592	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_014565.2	+1	validated	p.Q226	0.051	565	0%	488	43.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ITGA2B	3674	genome.wustl.edu	37	17	42455866	42455866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_000419.3	-1	reviewed	p.P653L	0.876	23	0%	29	44.8%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
GRIN3B	116444	genome.wustl.edu	37	19	1009186	1009188	+	In_Frame_Del	DEL	AGC	AGC	-	rs142853420	byCluster;by1000genomes	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_138690.1	+1	provisional	p.Q910in_frame_del	0.000:0.001:0.016	-	-	-	-	-	-	-	-	-	NULL
ZNF486	90649	genome.wustl.edu	37	19	20308180	20308180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_052852.2	+1	provisional	p.R221W	0.000	273	0%	258	37.2%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM187B	148109	genome.wustl.edu	37	19	35719284	35719284	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_152481.1	-1	provisional	p.G100	0.000	125	0%	129	43.4%	0	-	-	-	-	NULL
HNRNPUL1	11100	genome.wustl.edu	37	19	41800486	41800486	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_007040.3	+1	reviewed	p.R471	0.981	75	0%	83	38.6%	69	31.8%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
IZUMO2	126123	genome.wustl.edu	37	19	50657969	50657969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_152358.2	-1	validated	p.R171C	0.994	95	0%	105	37.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000197025	0	genome.wustl.edu	37	19	56889273	56889274	+	Frame_Shift_Ins	INS	-	-	AGTCCTTT	rs11280846	byCluster;by1000genomes	TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	ENST00000356456	+1	known	p.S224fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KRTAP10-8	386681	genome.wustl.edu	37	21	46032744	46032744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_198695.2	+1	validated	p.A243S	0.096	121	0%	147	42.9%	0	-	unknown(0)	tolerated(0.59)	-	HMMPfam_Keratin_B2
RTDR1	27156	genome.wustl.edu	37	22	23406170	23406170	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_014433.2	-1	reviewed	p.G188fs	0.000	-	-	-	-	-	-	-	-	-	superfamily_ARM-type_fold
SEC14L4	284904	genome.wustl.edu	37	22	30899666	30899666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_174977.3	-1	reviewed	p.R43Q	1.000	56	0%	23	39.1%	1	100%	possibly_damaging(0.899)	tolerated(0.15)	deleterious(0.597)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
RAI2	10742	genome.wustl.edu	37	X	17819515	17819515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_021785.4	-1	reviewed	p.P206S	1.000	75	0%	128	27.3%	2	50%	unknown(0)	deleterious(0)	-	NULL
LONRF3	79836	genome.wustl.edu	37	X	118143158	118143158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_001031855.1	+1	reviewed	p.E534*	1.000	154	0%	131	36.6%	0	-	-	-	-	superfamily_RING/U-box
LOC643421	643421	genome.wustl.edu	37	X	120997591	120997591	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	XM_002343843.1	-1	model	p.I116N	0.743	32	0%	39	41%	0	-	-	-	-	HMMPfam_TCTP,superfamily_Mss4-like
FLNA	2316	genome.wustl.edu	37	X	153593083	153593083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	ENST00000420627	-1	known	p.L584F	1.000	38	0%	25	28%	14	0%	unknown(0)	-	-	NULL
IL9R	3581	genome.wustl.edu	37	X	155239799	155239801	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-B5-A0K4-01A-11W-A062-09	TCGA-B5-A0K4-10A-01W-A062-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b97dc818-535e-40c1-afe9-bdeb8ab117cc	62c54fc9-0fac-42cd-bdb0-443716f82a74	NM_002186.2	+1	reviewed	p.S434in_frame_del	0.000:0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
