Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
USP24	23358	genome.wustl.edu	37	1	55563666	55563668	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_015306.2	-1	validated	p.G1688in_frame_del	1.000:0.997:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP33	23032	genome.wustl.edu	37	1	78189120	78189120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_015017.3	-1	validated	p.A460T	0.987	344	0%	338	44.1%	2	0%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_UCH,superfamily_Cysteine proteinases
IGSF3	3321	genome.wustl.edu	37	1	117122291	117122292	+	In_Frame_Ins	INS	-	-	TCC	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001542.2	-1	validated	p.1040in_frame_insE	0.000:0.001	-	-	-	-	-	-	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
FAM78B	149297	genome.wustl.edu	37	1	166135325	166135325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001017961.3	-1	validated	p.R54H	1.000	38	0%	117	23.1%	0	-	possibly_damaging(0.943)	tolerated(0.06)	deleterious(0.710)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196309693	196309693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_198503.2	-1	validated	p.V521I	1.000	126	0%	170	75.3%	0	-	probably_damaging(0.975)	tolerated(0.34)	neutral(0.440)	HMMPfam_BK_channel_a,superfamily_NAD(P)-binding Rossmann-fold domains
MERTK	10461	genome.wustl.edu	37	2	112786220	112786220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_006343.2	+1	reviewed	p.G927R	0.671	85	0%	114	49.1%	7	71.4%	benign(0.167)	deleterious(0.03)	neutral(0.380)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141032087	141032087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_018557.2	-1	validated	p.R4350C	0.994	353	0.3%	328	48.8%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_EGF,PatternScan_EGF_1
TPRXL	348825	genome.wustl.edu	37	3	14106310	14106310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000326972	+1	known	p.S212P	0.999	10	0%	10	40%	0	-	unknown(0)	deleterious(0.03)	-	NULL
NICN1	84276	genome.wustl.edu	37	3	49463812	49463812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_032316.3	-1	reviewed	p.R61H	1.000	99	0%	154	51.9%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
RFT1	91869	genome.wustl.edu	37	3	53156457	53156457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_052859.3	-1	reviewed	p.A130V	0.991	91	0%	106	51.9%	0	-	benign(0.231)	tolerated(0.16)	neutral(0.082)	HMMPfam_Rft-1
VPS8	23355	genome.wustl.edu	37	3	184588534	184588534	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001009921.2	+1	validated	p.R559*	0.035	181	0%	197	44.7%	1	0%	-	-	-	NULL
KLHL8	57563	genome.wustl.edu	37	4	88091287	88091287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_020803.3	-1	validated	p.G494V	1.000	175	0%	168	40.5%	1	100%	possibly_damaging(0.83)	tolerated(0.63)	neutral(0.319)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PCDHAC2	56134	genome.wustl.edu	37	5	140347146	140347146	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_018899.5	+1	reviewed	p.Q265	0.033	49	0%	66	59.1%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
EYS	346007	genome.wustl.edu	37	6	65300639	65300639	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001142800.1	-1	reviewed	p.Y1707*	0.000	101	0%	57	54.4%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
FIS1	51024	genome.wustl.edu	37	7	100887352	100887352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000435848	-1	known	p.T28M	0.961	81	0%	111	47.7%	12	25%	unknown(0)	-	-	NULL
LAMC3	10319	genome.wustl.edu	37	9	133967113	133967113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_006059.3	+1	reviewed	p.D1556A	1.000	31	0%	58	53.4%	13	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
MAMDC4	158056	genome.wustl.edu	37	9	139750061	139750061	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000413647	+1	known	p.A469T	0.204	9	0.000	11	0.545	2	0%	-	-	-	HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
ADARB2	105	genome.wustl.edu	37	10	1284304	1284304	+	Silent	SNP	G	G	A	rs183812854	by1000genomes	TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_018702.2	-1	reviewed	p.S417	1.000	12	8.3%	29	55.2%	0	-	-	-	-	HMMPfam_A_deamin,HMMSmart_ADEAMc
AKR1CL1	340811	genome.wustl.edu	37	10	5203920	5203920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000380510	-1	known	p.F93V	0.270	251	0%	176	41.5%	0	-	benign(0.03)	deleterious(0.02)	neutral(0.385)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
PTEN	5728	genome.wustl.edu	37	10	89624294	89624297	+	Frame_Shift_Del	DEL	TAGA	TAGA	-	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	TAGA	TAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000371953	+1	known	p.L23fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MGEA5	10724	genome.wustl.edu	37	10	103577776	103577776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_012215.3	-1	validated	p.V2L	1.000	15	0%	13	69.2%	5	40%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
AGBL2	79841	genome.wustl.edu	37	11	47713756	47713756	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_024783.2	-1	validated	p.G249	0.001	268	0%	314	42.7%	1	0%	-	-	-	NULL
OR8J3	81168	genome.wustl.edu	37	11	55905188	55905188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001004064.1	-1	provisional	p.P3S	0.000	197	0%	92	92.4%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_SSF81321
PRPF19	27339	genome.wustl.edu	37	11	60668157	60668157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_014502.4	-1	validated	p.A242V	1.000	182	0%	76	86.8%	4	100%	benign(0.01)	tolerated(1)	neutral(0.001)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
INPPL1	3636	genome.wustl.edu	37	11	71944765	71944765	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001567.3	+1	reviewed	p.S731fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_IPPc,superfamily_Exo_endo_phos
ALX1	8092	genome.wustl.edu	37	12	85695167	85695167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_006982.2	+1	reviewed	p.P299T	1.000	193	0%	191	44%	3	100%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
SCYL2	55681	genome.wustl.edu	37	12	100723090	100723090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_017988.4	+1	provisional	p.L585R	1.000	264	0%	224	33.9%	3	0%	benign(0.016)	deleterious(0)	neutral(0.445)	superfamily_ARM repeat
DNAH10	196385	genome.wustl.edu	37	12	124364329	124364329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_207437.3	+1	validated	p.A2754V	0.996	126	0%	121	47.9%	0	-	benign(0.009)	tolerated(0.31)	neutral(0.028)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RBM23	55147	genome.wustl.edu	37	14	23371572	23371572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001077351.1	-1	reviewed	p.A317V	0.999	110	0%	93	44.1%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM23	55147	genome.wustl.edu	37	14	23371573	23371573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001077351.1	-1	reviewed	p.A317S	1.000	108	0%	94	42.6%	6	83.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FANCM	57697	genome.wustl.edu	37	14	45605614	45605614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_020937.2	+1	reviewed	p.N127S	1.000	156	0%	186	50%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARID4A	5926	genome.wustl.edu	37	14	58796245	58796245	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_002892.3	+1	reviewed	e9-1	1.000	188	0%	124	41.1%	0	-	-	-	-	-
SPTB	6710	genome.wustl.edu	37	14	65262140	65262140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001024858.2	-1	reviewed	p.R520Q	1.000	55	0%	76	42.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MKRN3	7681	genome.wustl.edu	37	15	23812359	23812359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_005664.3	+1	reviewed	p.R477Q	0.025	271	0%	261	45.6%	0	-	benign(0.424)	tolerated(0.33)	neutral(0.162)	NULL
ANPEP	290	genome.wustl.edu	37	15	90349632	90349632	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001150.2	-1	reviewed	p.S61	0.000	145	0%	203	50.2%	1	0%	-	-	-	NULL
PPL	5493	genome.wustl.edu	37	16	4935381	4935381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_002705.4	-1	reviewed	p.S1092N	0.800	70	0%	96	51%	2	50%	benign(0.174)	tolerated(0.31)	neutral(0.043)	NULL
ZNF668	79759	genome.wustl.edu	37	16	31073402	31073402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_024706.4	-1	validated	p.P283T	1.000	32	0%	33	15.2%	7	0%	probably_damaging(1)	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PDPR	55066	genome.wustl.edu	37	16	70187349	70187349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_017990.3	+1	validated	p.R703Q	1.000	394	0.3%	364	28.8%	1	0%	possibly_damaging(0.827)	tolerated(0.38)	neutral(0.332)	HMMPfam_GCV_T,superfamily_SSF103025
WSCD1	23302	genome.wustl.edu	37	17	6014175	6014175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_015253.1	+1	validated	p.T365I	0.999	103	0%	110	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
ENSG00000246237	0	genome.wustl.edu	37	17	38175428	38175429	+	RNA	INS	-	-	ACACAC	rs5820318		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000501516	+1	novel	NULL	0.007:0.006	-	-	-	-	-	-	-	-	-	-
ABCA6	23460	genome.wustl.edu	37	17	67133468	67133468	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_080284.2	-1	reviewed	p.M90I	1.000	375	0.3%	320	45%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	NULL
LOC100289576	100289576	genome.wustl.edu	37	17	72428120	72428120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	XM_002343581.1	-1	model	p.N682S	0.002	15	0%	14	64.3%	0	-	-	-	-	NULL
RAB12	201475	genome.wustl.edu	37	18	8624996	8624996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001025300.2	+1	validated	p.W96L	1.000	416	0%	306	46.1%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
MAPK4	5596	genome.wustl.edu	37	18	48190376	48190376	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_002747.3	+1	reviewed	p.L16	0.444	61	0%	104	57.7%	1	100%	-	-	-	superfamily_Protein kinase-like (PK-like)
CEACAM21	90273	genome.wustl.edu	37	19	42083748	42083748	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001098506.1	+1	validated	p.H87	0.000	148	0%	144	50.7%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PTPRT	11122	genome.wustl.edu	37	20	41306611	41306611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_133170.3	-1	reviewed	p.L350M	1.000	127	0%	180	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZNF217	7764	genome.wustl.edu	37	20	52193698	52193698	+	Missense_Mutation	SNP	G	G	C	rs7270855	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_006526.2	-1	validated	p.N535K	0.000	137	0%	99	45.5%	1	0%	benign(0.011)	tolerated(0.15)	neutral(0.241)	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	2203	2203	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000387347	+1	known	NULL	NULL	24	4.2%	14	92.9%	8063	96.2%	-	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	3082	3082	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000387347	+1	known	NULL	NULL	3	0.000	4	1.000	8050	95.9%	-	-	-	-
CXorf67	340602	genome.wustl.edu	37	X	51151376	51151376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	ENST00000342995	+1	known	p.P503L	0.007	20	0%	18	61.1%	0	-	probably_damaging(0.999)	-	-	NULL
COL4A5	1287	genome.wustl.edu	37	X	107910413	107910413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_033380.1	+1	reviewed	p.G1202S	1.000	168	1.2%	146	35.6%	4	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
IGSF1	3547	genome.wustl.edu	37	X	130415643	130415643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001555.4	-1	reviewed	p.A508T	0.987	181	0%	235	49.8%	0	-	probably_damaging(0.979)	tolerated(0.19)	deleterious(0.471)	NULL
FHL1	2273	genome.wustl.edu	37	X	135289250	135289250	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_001449.4	+1	reviewed	p.E78Q	1.000	64	0%	90	52.2%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
AFF2	2334	genome.wustl.edu	37	X	148044333	148044333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Q-01A-11D-A122-09	TCGA-B5-A11Q-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63c08c12-8b27-475e-9f89-622578562a5e	aced0cd1-0bfa-470a-b9e8-5d2861d37c9c	NM_002025.3	+1	reviewed	p.R927C	0.981	226	0.4%	246	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AF-4
