Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKRD20B	729171	genome.wustl.edu	37	2	95464577	95464577	+	RNA	SNP	T	T	C	rs10193770	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	2	95464577	95464577	T	C	SNP	ANKRD20B	NR_003366.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.019	-	-	-	pseudogene
CCNI2	645121	genome.wustl.edu	37	5	132084048	132084048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	5	132084048	132084048	T	C	SNP	CCNI2	NM_001039780.2	human	genbank	58_37c	+1	provisional	missense	c.439	p.C147R	0.036	superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	68772218	68772218	C	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
DEPDC1	55635	genome.wustl.edu	37	1	68954121	68954121	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	1	68954121	68954121	T	-	DEL	DEPDC1	NM_001114120.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.657	p.Q219fs	0.702	NULL	HMMPfam_RhoGAP,HMMPfam_DEP,HMMSmart_DEP,superfamily_Rho_GAP,superfamily_SSF46785	-	no_errors
ENSG00000247772	0	genome.wustl.edu	37	11	47378902	47378903	+	RNA	DEL	CA	CA	-	rs72339224	byCluster;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	11	47378902	47378903	CA	-	DEL	SPI1	NM_001080547.1	human	genbank	58_37c	-1	reviewed	intronic	c.496+1492_496+1491	e4+1492	0.758:0.754	-	-	-	no_errors
FLYWCH1	84256	genome.wustl.edu	37	16	2983810	2983810	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	2983810	2983810	T	G	SNP	FLYWCH1	NM_032296.2	human	genbank	58_37c	+1	validated	missense	c.1340	p.V447G	1.000	HMMPfam_FLYWCH	HMMPfam_FLYWCH	-	no_errors
GLI4	2738	genome.wustl.edu	37	8	144356931	144356931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	8	144356931	144356931	A	G	SNP	GLI4	NM_138465.3	human	genbank	58_37c	+1	validated	missense	c.182	p.D61G	0.026	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
GRID2IP	392862	genome.wustl.edu	37	7	6545509	6545509	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	7	6545509	6545509	C	A	SNP	GRID2IP	NM_001145118.1	human	genbank	58_37c	-1	validated	silent	c.2574	p.L858	1.000	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
KCNF1	3754	genome.wustl.edu	37	2	11053551	11053551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	2	11053551	11053551	G	A	SNP	KCNF1	NM_002236.4	human	genbank	58_37c	+1	reviewed	silent	c.999	p.V333	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KIR3DL2	3812	genome.wustl.edu	37	19	55363677	55363677	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	19	55363677	55363677	C	T	SNP	KIR3DL2	NM_006737.2	human	genbank	58_37c	+1	reviewed	missense	c.295	p.R99C	0.000	HMMSmart_IG,superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC441666	441666	genome.wustl.edu	37	10	42831804	42831804	+	RNA	SNP	A	A	G	rs12268972	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	10	42831804	42831804	A	G	SNP	LOC441666	NR_024380.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.010	-	-	-	pseudogene
MGMT	4255	genome.wustl.edu	37	10	131565093	131565093	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	10	131565093	131565093	C	T	SNP	MGMT	NM_002412.3	human	genbank	58_37c	+1	validated	silent	c.549	p.S183	0.984	HMMPfam_DNA_binding_1,superfamily_MethylDNA_cys_mtrans_DNA_bd	PatternScan_THIOL_PROTEASE_HIS,PatternScan_MGMT,HMMPfam_Methyltransf_1N,HMMPfam_DNA_binding_1,superfamily_MethylDNA_cys_mtrans_DNA_bd,superfamily_SSF53155	-	no_errors
MYH7	4625	genome.wustl.edu	37	14	23899017	23899017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	14	23899017	23899017	G	A	SNP	MYH7	NM_000257.2	human	genbank	58_37c	-1	reviewed	missense	c.1105	p.R369W	0.995	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228559663	228559663	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	1	228559663	228559663	C	T	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	missense	c.21184	p.P7062S	0.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936083	178936083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	3	178936083	178936083	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1625	p.E542G	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PITPNM3	83394	genome.wustl.edu	37	17	6380354	6380354	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	17	6380354	6380354	G	A	SNP	PITPNM3	NM_031220.3	human	genbank	58_37c	-1	reviewed	silent	c.1080	p.L360	0.992	NULL	HMMPfam_DDHD,HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like	-	no_errors
PNMA2	10687	genome.wustl.edu	37	8	26365666	26365666	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	8	26365666	26365666	C	G	SNP	PNMA2	NM_007257.5	human	genbank	58_37c	-1	validated	missense	c.606	p.K202N	1.000	NULL	HMMPfam_Retrotrans_gag	-	no_errors
PPP1R16B	26051	genome.wustl.edu	37	20	37546989	37546989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	20	37546989	37546989	G	A	SNP	PPP1R16B	NM_015568.2	human	genbank	58_37c	+1	reviewed	missense	c.1384	p.V462M	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
TAGLN	6876	genome.wustl.edu	37	11	117075033	117075033	+	Silent	SNP	C	C	A	rs139773620	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	11	117075033	117075033	C	A	SNP	TAGLN	NM_001001522.1	human	genbank	58_37c	+1	reviewed	silent	c.564	p.A188	0.934	HMMPfam_Calponin,PatternScan_CALPONIN_1	HMMPfam_Calponin,PatternScan_CALPONIN_1,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors
TSC2	7249	genome.wustl.edu	37	16	2134569	2134569	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	2134569	2134569	C	G	SNP	TSC2	NM_000548.3	human	genbank	58_37c	+1	reviewed	missense	c.4346	p.S1449C	0.007	NULL	HMMPfam_Rap_GAP,superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
