Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKH	56172	genome.wustl.edu	37	5	14716838	14716838	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	5	14716838	14716838	A	T	SNP	ANKH	NM_054027.4	human	genbank	58_37c	-1	reviewed	missense	c.1118	p.I373N	1.000	NULL	HMMPfam_ANKH	-	no_errors
ATAD5	79915	genome.wustl.edu	37	17	29220890	29220890	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	29220890	29220890	T	C	SNP	ATAD5	NM_024857.3	human	genbank	58_37c	+1	provisional	silent	c.5019	p.G1673	1.000	NULL	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CAPN11	11131	genome.wustl.edu	37	6	44150736	44150736	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	6	44150736	44150736	G	T	SNP	CAPN11	NM_007058.3	human	genbank	58_37c	+1	reviewed	missense	c.1997	p.R666L	0.995	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_CysPc,HMMSmart_calpain_III,superfamily_Peptidase_C2,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
CCR2	1231	genome.wustl.edu	37	3	46399915	46399915	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	3	46399915	46399915	C	T	SNP	CCR2	NM_001123041.2	human	genbank	58_37c	+1	validated	silent	c.897	p.C299	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CD1D	912	genome.wustl.edu	37	1	158150918	158150918	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	1	158150918	158150918	C	T	SNP	CD1D	NM_001766.3	human	genbank	58_37c	+1	reviewed	silent	c.27	p.L9	0.003	NULL	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
CHAF1A	10036	genome.wustl.edu	37	19	4428843	4428843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	19	4428843	4428843	C	T	SNP	CHAF1A	NM_005483.2	human	genbank	58_37c	+1	validated	silent	c.1560	p.S520	0.103	NULL	NULL	-	no_errors
DENND3	22898	genome.wustl.edu	37	8	142202779	142202779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	8	142202779	142202779	G	A	SNP	DENND3	ENST00000398933	human	ensembl	58_37c	+1	known	missense	c.563	p.R188H	0.000	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
ENSG00000245285	0	genome.wustl.edu	37	2	96809543	96809543	+	RNA	SNP	C	C	G	rs146609611	by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	2	96809543	96809543	C	G	SNP	LOC100288133	XM_002342242.1	human	genbank	58_37c	+1	model	5_prime_untranslated_region	c.-62	NULL	0.576	-	-	-	no_errors
ENSG00000247773	0	genome.wustl.edu	37	22	24384070	24384070	+	RNA	SNP	C	C	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	22	24384070	24384070	C	A	SNP	GSTT1	NM_000853.2	human	genbank	58_37c	-1	reviewed	intronic	c.112+50	e1+50	0.073	-	-	-	no_errors
FSTL5	56884	genome.wustl.edu	37	4	162577518	162577518	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	4	162577518	162577518	T	C	SNP	FSTL5	NM_020116.3	human	genbank	58_37c	-1	validated	missense	c.856	p.N286D	0.978	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726	HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,superfamily_Amine_DH_B_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF100895,superfamily_SSF47473,superfamily_SSF48726	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors
GRN	2896	genome.wustl.edu	37	17	42427892	42427892	+	Missense_Mutation	SNP	C	C	T	rs63750479	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	42427892	42427892	C	T	SNP	GRN	NM_002087.2	human	genbank	58_37c	+1	reviewed	missense	c.545	p.T182M	0.000	NULL	HMMPfam_Granulin,HMMSmart_SM00277,PatternScan_GRANULINS,PatternScan_PA2_HIS,superfamily_Granulin repeat	-	no_errors
IKBKE	9641	genome.wustl.edu	37	1	206648210	206648210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	1	206648210	206648210	C	T	SNP	IKBKE	NM_014002.2	human	genbank	58_37c	+1	validated	silent	c.231	p.G77	0.995	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
KCTD10	83892	genome.wustl.edu	37	12	109895450	109895450	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	12	109895450	109895450	T	G	SNP	KCTD10	NM_031954.3	human	genbank	58_37c	-1	provisional	missense	c.512	p.K171T	1.000	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain	-	no_errors
LRBA	987	genome.wustl.edu	37	4	151682938	151682938	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	4	151682938	151682938	C	-	DEL	LRBA	NM_006726.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.5642	p.G1881fs	1.000	HMMPfam_DUF1088,superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
MCM4	4173	genome.wustl.edu	37	8	48882407	48882407	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	8	48882407	48882407	G	A	SNP	MCM4	NM_005914.2	human	genbank	58_37c	+1	reviewed	silent	c.1224	p.V408	0.995	HMMSmart_MCM,superfamily_Nucleic_acid_OB	HMMPfam_MCM,HMMSmart_MCM,HMMSmart_AAA,superfamily_Nucleic_acid_OB,PatternScan_MCM_1,superfamily_SSF52540	-	no_errors
OR51V1	283111	genome.wustl.edu	37	11	5221911	5221911	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	5221911	5221911	A	G	SNP	OR51V1	NM_001004760.2	human	genbank	58_37c	-1	validated	missense	c.20	p.M7T	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PDE9A	5152	genome.wustl.edu	37	21	44106372	44106372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	21	44106372	44106372	G	A	SNP	PDE9A	NM_002606.2	human	genbank	58_37c	+1	reviewed	missense	c.140	p.R47Q	1.000	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PGAP2	27315	genome.wustl.edu	37	11	3846853	3846855	+	RNA	DEL	CTC	CTC	-	rs3217617	byCluster;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	3846853	3846855	CTC	-	DEL	PGAP2	NR_027014.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.231:0.226:0.001	-	-	-	no_errors
RABEPK	10244	genome.wustl.edu	37	9	127994885	127994885	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	9	127994885	127994885	A	G	SNP	RABEPK	NM_005833.3	human	genbank	58_37c	+1	validated	silent	c.687	p.K229	0.887	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
TANC2	26115	genome.wustl.edu	37	17	61489359	61489359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	61489359	61489359	G	A	SNP	TANC2	NM_025185.3	human	genbank	58_37c	+1	validated	missense	c.3544	p.V1182I	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
WDR74	54663	genome.wustl.edu	37	11	62603453	62603453	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	62603453	62603453	T	A	SNP	WDR74	NM_018093.2	human	genbank	58_37c	-1	validated	nonsense	c.349	p.K117*	0.358	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZDHHC3	51304	genome.wustl.edu	37	3	44970893	44970893	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	3	44970893	44970893	G	T	SNP	ZDHHC3	NM_001135180.1	human	genbank	58_37c	-1	validated	missense	c.646	p.L216I	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors
