Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABHD2	11057	genome.wustl.edu	37	15	89698616	89698616	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	15	89698616	89698616	T	A	SNP	ABHD2	NM_007011.7	human	genbank	58_37c	+1	reviewed	missense	c.389	p.I130N	1.000	superfamily_SSF53474	HMMPfam_Abhydrolase_1,PatternScan_UPF0017,superfamily_SSF53474	-	no_errors
ANKRD13D	338692	genome.wustl.edu	37	11	67057824	67057824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	67057824	67057824	C	T	SNP	ANKRD13D	ENST00000447274	human	ensembl	58_37c	+1	known	silent	c.258	p.P86	0.001	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_UIM,HMMSmart_SM00726	-	no_errors
ARMET	7873	genome.wustl.edu	37	3	51423726	51423726	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	51423726	51423726	T	C	SNP	MANF	ENST00000438713	human	ensembl	58_37c	+1	known	missense	c.173	p.I58T	0.190	HMMPfam_Armet	HMMPfam_Armet	-	no_errors
ATHL1	80162	genome.wustl.edu	37	11	289924	289924	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	289924	289924	T	A	SNP	ATHL1	NM_025092.4	human	genbank	58_37c	+1	validated	missense	c.108	p.F36L	0.753	NULL	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases	-	no_errors
C15orf39	56905	genome.wustl.edu	37	15	75501096	75501096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	15	75501096	75501096	C	T	SNP	C15orf39	NM_015492.4	human	genbank	58_37c	+1	validated	missense	c.2707	p.R903C	1.000	NULL	NULL	-	no_errors
C19orf38	255809	genome.wustl.edu	37	19	10973880	10973880	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	19	10973880	10973880	C	G	SNP	C19orf38	NM_001136482.1	human	genbank	58_37c	+1	provisional	silent	c.540	p.S180	0.003	NULL	superfamily_SSF48726	-	no_errors
C2orf39	92749	genome.wustl.edu	37	2	26671656	26671656	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	2	26671656	26671656	C	T	SNP	C2orf39	NM_145038.2	human	genbank	58_37c	+1	validated	silent	c.1494	p.L498	0.012	NULL	NULL	-	no_errors
CYP17A1	1586	genome.wustl.edu	37	10	104590523	104590523	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	104590523	104590523	G	T	SNP	CYP17A1	NM_000102.3	human	genbank	58_37c	-1	reviewed	missense	c.1463	p.S488Y	0.892	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
ENSG00000214331	0	genome.wustl.edu	37	16	74386002	74386002	+	Silent	SNP	A	A	G	rs148921572	by1000genomes	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	16	74386002	74386002	A	G	SNP	ENSG00000214331	ENST00000429810	human	ensembl	58_37c	-1	known	silent	c.543	p.P181	0.014	HMMPfam_DAO,superfamily_SSF51905	HMMPfam_DAO,superfamily_SSF51905	-	no_stop_codon
FAM175B	23172	genome.wustl.edu	37	10	126523295	126523295	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	126523295	126523295	C	T	SNP	FAM175B	NM_032182.3	human	genbank	58_37c	+1	validated	nonsense	c.1003	p.Q335*	1.000	NULL	NULL	-	no_errors
FAM21C	253725	genome.wustl.edu	37	10	46282632	46282632	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	46282632	46282632	T	C	SNP	FAM21C	NM_015262.2	human	genbank	58_37c	+1	validated	silent	c.2955	p.S985	0.088	NULL	NULL	-	no_errors
FAT2	2196	genome.wustl.edu	37	5	150948446	150948446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	5	150948446	150948446	G	A	SNP	FAT2	NM_001447.2	human	genbank	58_37c	-1	reviewed	missense	c.47	p.A16V	0.000	NULL	HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors
FGFR2	2263	genome.wustl.edu	37	10	123239386	123239386	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	123239386	123239386	G	A	SNP	FGFR2	NM_022970.3	human	genbank	58_37c	-1	reviewed	silent	c.2454	p.G818	1.000	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
GPR142	350383	genome.wustl.edu	37	17	72368642	72368642	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	17	72368642	72368642	A	G	SNP	GPR142	NM_181790.1	human	genbank	58_37c	+1	provisional	missense	c.1292	p.D431G	0.059	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
LOC100132672	0	genome.wustl.edu	37	9	69501969	69501969	+	RNA	SNP	C	C	A	rs7040086	byCluster;by2Hit2Allele;by1000genomes;byHapmap	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	9	69501969	69501969	C	A	SNP	LOC100132672	XR_038504.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
NAV3	89795	genome.wustl.edu	37	12	78388624	78388624	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	12	78388624	78388624	T	C	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	missense	c.713	p.I238T	1.000	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NDUFS7	374291	genome.wustl.edu	37	19	1387829	1387829	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	19	1387829	1387829	C	-	DEL	NDUFS7	NM_024407.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.36	p.R13fs	0.000	NULL	HMMPfam_Oxidored_q6,PatternScan_COMPLEX1_20K,superfamily_Nickel-iron hydrogenase small subunit	-	no_errors
NEDD9	4739	genome.wustl.edu	37	6	11193886	11193886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	6	11193886	11193886	C	T	SNP	NEDD9	NM_001142393.1	human	genbank	58_37c	-1	validated	missense	c.499	p.E167K	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich	-	no_errors
NOX1	27035	genome.wustl.edu	37	X	100103700	100103700	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	X	100103700	100103700	A	C	SNP	NOX1	NM_007052.4	human	genbank	58_37c	-1	reviewed	missense	c.1487	p.V496G	0.975	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
PCDHB5	26167	genome.wustl.edu	37	5	140515898	140515898	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	5	140515898	140515898	C	T	SNP	PCDHB5	NM_015669.2	human	genbank	58_37c	+1	reviewed	silent	c.882	p.D294	0.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178922328	178922328	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	178922328	178922328	C	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1097	p.P366R	1.000	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIPSL	266971	genome.wustl.edu	37	10	95721080	95721080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	95721080	95721080	C	T	SNP	PIPSL	NR_002319.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.993	-	-	-	pseudogene
PLCB3	5331	genome.wustl.edu	37	11	64022269	64022269	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	64022269	64022269	G	A	SNP	PLCB3	NM_000932.2	human	genbank	58_37c	+1	reviewed	missense	c.227	p.R76Q	0.998	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
PLXNA4	91584	genome.wustl.edu	37	7	131870086	131870086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	7	131870086	131870086	G	A	SNP	PLXNA4	NM_020911.1	human	genbank	58_37c	-1	validated	missense	c.3130	p.R1044W	1.000	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
POPDC2	64091	genome.wustl.edu	37	3	119378920	119378920	+	Silent	SNP	C	C	T	rs139350474	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	3	119378920	119378920	C	T	SNP	POPDC2	NM_022135.2	human	genbank	58_37c	-1	reviewed	silent	c.351	p.L117	1.000	HMMPfam_Popeye	HMMPfam_Popeye,superfamily_cAMP-binding domain-like	-	no_errors
PPEF1	5475	genome.wustl.edu	37	X	18824537	18824537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	X	18824537	18824537	C	T	SNP	PPEF1	NM_006240.2	human	genbank	58_37c	+1	reviewed	missense	c.1268	p.S423F	1.000	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases	HMMPfam_IQ,HMMSmart_SM00015,HMMSmart_SM00054,HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,HMMPfam_PPP5,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Metallo-dependent phosphatases	-	no_errors
PPP1R12B	4660	genome.wustl.edu	37	1	202318211	202318211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	1	202318211	202318211	C	T	SNP	PPP1R12B	NM_032105.2	human	genbank	58_37c	+1	reviewed	silent	c.232	p.L78	0.965	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237656376	237656376	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	1	237656376	237656376	C	A	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.1950	p.N650K	1.000	HMMPfam_RYDR_ITPR	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SEMA4F	10505	genome.wustl.edu	37	2	74907173	74907173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	2	74907173	74907173	C	T	SNP	SEMA4F	NM_004263.3	human	genbank	58_37c	+1	provisional	missense	c.2150	p.P717L	1.000	NULL	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SH3PXD2A	9644	genome.wustl.edu	37	10	105362895	105362895	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	10	105362895	105362895	T	C	SNP	SH3PXD2A	NM_014631.2	human	genbank	58_37c	-1	validated	missense	c.1996	p.I666V	0.982	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	-	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50350796	50350796	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	X	50350796	50350796	G	A	SNP	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	missense	c.3346	p.R1116C	0.256	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLC17A6	57084	genome.wustl.edu	37	11	22360147	22360147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	22360147	22360147	C	T	SNP	SLC17A6	NM_020346.2	human	genbank	58_37c	+1	validated	missense	c.68	p.S23L	1.000	NULL	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC30A10	55532	genome.wustl.edu	37	1	220089131	220089131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	1	220089131	220089131	G	A	SNP	SLC30A10	NM_018713.2	human	genbank	58_37c	-1	validated	missense	c.1118	p.A373V	0.048	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SNX1	6642	genome.wustl.edu	37	15	64428587	64428587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	15	64428587	64428587	G	A	SNP	SNX1	NM_003099.3	human	genbank	58_37c	+1	reviewed	missense	c.1424	p.R475Q	1.000	HMMPfam_Vps5	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_Sorting_nexin,HMMPfam_Vps5	-	no_errors
SOCS6	9306	genome.wustl.edu	37	18	67992682	67992682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	18	67992682	67992682	C	T	SNP	SOCS6	NM_004232.3	human	genbank	58_37c	+1	reviewed	missense	c.778	p.R260C	0.000	NULL	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_SOCS_box,HMMSmart_SOCS,superfamily_SSF55550	-	no_errors
SYT16	83851	genome.wustl.edu	37	14	62547865	62547865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	14	62547865	62547865	G	A	SNP	SYT16	NM_031914.2	human	genbank	58_37c	+1	validated	missense	c.1307	p.R436H	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TMEM80	283232	genome.wustl.edu	37	11	700143	700143	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	11	700143	700143	T	C	SNP	TMEM80	NM_001042463.1	human	genbank	58_37c	+1	provisional	missense	c.116	p.L39P	1.000	NULL	HMMPfam_Transmemb_17	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578458	7578458	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	17	7578458	7578458	G	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.472	p.R158G	0.981	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
WHSC1	7468	genome.wustl.edu	37	4	1980493	1980493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BT-01A-11D-A12Q-09	TCGA-BH-A0BT-11A-21D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2299036e-7099-4b53-9143-5935442c3310	24fe7169-ca64-498d-8445-4fd23dff34a8	4	1980493	1980493	G	A	SNP	WHSC1	NM_001042424.2	human	genbank	58_37c	+1	reviewed	missense	c.3955	p.G1319R	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
