Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM21	8747	genome.wustl.edu	37	14	70924294	70924294	+	Silent	SNP	C	C	T	rs112060847	byCluster;byFrequency	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	70924294	70924294	C	T	SNP	ADAM21	NM_003813.2	human	genbank	58_37c	+1	reviewed	silent	c.78	p.S26	0.000	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKAP14	158798	genome.wustl.edu	37	X	119037537	119037537	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	X	119037537	119037537	C	T	SNP	AKAP14	NM_178813.5	human	genbank	58_37c	+1	reviewed	silent	c.249	p.D83	0.000	NULL	NULL	-	no_errors
BRCA1	672	genome.wustl.edu	37	17	41199695	41199695	+	Missense_Mutation	SNP	T	T	A	rs80357040	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	17	41199695	41199695	T	A	SNP	BRCA1	NM_007294.3	human	genbank	58_37c	-1	reviewed	missense	c.5432	p.Q1811L	0.998	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
C6orf27	80737	genome.wustl.edu	37	6	31734300	31734300	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	31734300	31734300	C	T	SNP	C6orf27	NM_025258.2	human	genbank	58_37c	-1	validated	silent	c.2124	p.A708	0.000	NULL	HMMSmart_VWA,superfamily_SSF53300	-	no_errors
CDRT15L1	0	genome.wustl.edu	37	17	15668250	15668250	+	Missense_Mutation	SNP	G	G	A	rs138605095	by1000genomes	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	17	15668250	15668250	G	A	SNP	CDRT15L1	XM_932309.3	human	genbank	58_37c	+1	model	missense	c.160	p.D54N	0.002	NULL	NULL	-	no_errors
CORIN	10699	genome.wustl.edu	37	4	47839941	47839941	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	4	47839941	47839941	G	A	SNP	CORIN	NM_006587.2	human	genbank	58_37c	-1	reviewed	missense	c.26	p.P9L	0.004	NULL	superfamily_Frizzled cysteine-rich domain,PatternScan_SRCR_1,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_Trypsin-like serine proteases,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_TRYPSIN_SER,HMMPfam_Fz,HMMSmart_SM00063	-	no_errors
CREB5	9586	genome.wustl.edu	37	7	28848830	28848830	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	7	28848830	28848830	G	A	SNP	CREB5	NM_182898.2	human	genbank	58_37c	+1	reviewed	silent	c.1053	p.Q351	1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_bZIP_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
DCLRE1C	64421	genome.wustl.edu	37	10	14961809	14961809	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	14961809	14961809	A	G	SNP	DCLRE1C	NM_001033855.1	human	genbank	58_37c	-1	reviewed	missense	c.1084	p.S362P	0.915	NULL	HMMPfam_DRMBL,superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
DNAH1	25981	genome.wustl.edu	37	3	52417430	52417430	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	3	52417430	52417430	T	A	SNP	DNAH1	NM_015512.4	human	genbank	58_37c	+1	validated	missense	c.7970	p.I2657N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000245602	0	genome.wustl.edu	37	19	47998929	47998929	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	47998929	47998929	C	G	SNP	ENSG00000245602	ENST00000500835	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245932	0	genome.wustl.edu	37	19	53301877	53301879	+	RNA	DEL	TCC	TCC	-	rs56327714	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	53301877	53301879	TCC	-	DEL	ENSG00000245932	ENST00000500436	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.164:0.105:0.080	-	-	-	no_errors
ESR1	2099	genome.wustl.edu	37	6	152201810	152201810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	152201810	152201810	C	T	SNP	ESR1	NM_000125.3	human	genbank	58_37c	+1	reviewed	missense	c.664	p.P222S	1.000	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_Oest_recep,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115733	8115734	+	Frame_Shift_Ins	INS	-	-	CATCCAGACC	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	8115733	8115734	-	CATCCAGACC	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1082_1083	p.T365fs	1.000:1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GGPS1	9453	genome.wustl.edu	37	1	235505826	235505826	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	235505826	235505826	A	G	SNP	GGPS1	NM_001037277.1	human	genbank	58_37c	+1	reviewed	silent	c.642	p.S214	0.976	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth	HMMPfam_polyprenyl_synt,PatternScan_POLYPRENYL_SYNTHET_2,PatternScan_POLYPRENYL_SYNTHET_1,superfamily_Terpenoid_synth	-	no_errors
GRK6	2870	genome.wustl.edu	37	5	176859087	176859087	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	5	176859087	176859087	C	T	SNP	GRK6	NM_002082.3	human	genbank	58_37c	+1	reviewed	silent	c.240	p.C80	1.000	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RGS,HMMSmart_RGS,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_Regulat_G_prot_signal_superfam,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HIST1H2BB	3018	genome.wustl.edu	37	6	26043672	26043672	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	26043672	26043672	C	T	SNP	HIST1H2BB	NM_021062.2	human	genbank	58_37c	-1	reviewed	missense	c.214	p.E72K	1.000	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_H2B,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HNF4A	3172	genome.wustl.edu	37	20	43031282	43031282	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	20	43031282	43031282	G	A	SNP	HNF4A	ENST00000338692	human	ensembl	58_37c	+1	known	missense	c.203	p.G68E	0.000	NULL	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
HOMEZ	57594	genome.wustl.edu	37	14	23744803	23744803	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	23744803	23744803	T	-	DEL	HOMEZ	NM_020834.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1634	p.D545fs	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
HOMEZ	57594	genome.wustl.edu	37	14	23744805	23744806	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	23744805	23744806	AT	-	DEL	HOMEZ	NM_020834.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1632_1631	p.D544fs	0.994:0.998	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
HPDL	84842	genome.wustl.edu	37	1	45792976	45792976	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	45792976	45792976	G	C	SNP	HPDL	NM_032756.2	human	genbank	58_37c	+1	validated	silent	c.156	p.A52	0.000	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
IL1F5	26525	genome.wustl.edu	37	2	113819727	113819727	+	Missense_Mutation	SNP	C	C	T	rs151325121	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	2	113819727	113819727	C	T	SNP	IL1F5	NM_012275.2	human	genbank	58_37c	+1	reviewed	missense	c.142	p.R48W	0.988	HMMSmart_SM00125,superfamily_Cytokine	HMMPfam_IL1,HMMSmart_SM00125,PatternScan_INTERLEUKIN_1,superfamily_Cytokine	-	no_errors
IQCF1	132141	genome.wustl.edu	37	3	51929268	51929268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	3	51929268	51929268	G	A	SNP	IQCF1	NM_152397.2	human	genbank	58_37c	-1	validated	missense	c.256	p.R86W	0.067	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIAA1409	57578	genome.wustl.edu	37	14	94088208	94088208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	94088208	94088208	C	T	SNP	KIAA1409	NM_020818.3	human	genbank	58_37c	+1	validated	silent	c.4098	p.N1366	0.001	NULL	NULL	-	no_errors
KIF27	55582	genome.wustl.edu	37	9	86465140	86465140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	9	86465140	86465140	G	A	SNP	KIF27	NM_017576.1	human	genbank	58_37c	-1	provisional	missense	c.3430	p.R1144W	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100287189	0	genome.wustl.edu	37	11	47927031	47927031	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	11	47927031	47927031	G	A	SNP	LOC100287189	XM_002343060.1	human	genbank	58_37c	-1	model	silent	c.129	p.S43	0.081	NULL	HMMPfam_Sec61_beta	-	no_errors
LRIT1	26103	genome.wustl.edu	37	10	85991725	85991725	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	85991725	85991725	A	G	SNP	LRIT1	NM_015613.2	human	genbank	58_37c	-1	validated	silent	c.1830	p.F610	0.003	NULL	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
MIR548H4	0	genome.wustl.edu	37	8	26906434	26906438	+	RNA	DEL	TAAAG	TAAAG	-	rs74273836	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	TAAAG	TAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	26906434	26906438	TAAAG	-	DEL	MIR548H4	ENST00000408689	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.003:0.006:0.031:0.044:0.062	-	-	-	no_errors
MSTO2P	0	genome.wustl.edu	37	1	155715641	155715641	+	RNA	SNP	G	G	A	rs66501532	byCluster;by1000genomes	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	155715641	155715641	G	A	SNP	MSTO2P	NR_024117.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
MYH14	79784	genome.wustl.edu	37	19	50753926	50753926	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	50753926	50753926	T	C	SNP	MYH14	NM_001077186.1	human	genbank	58_37c	+1	reviewed	missense	c.1811	p.V604A	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCKAP1L	3071	genome.wustl.edu	37	12	54925050	54925050	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	54925050	54925050	G	A	SNP	NCKAP1L	NM_005337.4	human	genbank	58_37c	+1	reviewed	missense	c.2513	p.R838Q	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
PIK3C2B	5287	genome.wustl.edu	37	1	204394861	204394861	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	204394861	204394861	G	A	SNP	PIK3C2B	NM_002646.3	human	genbank	58_37c	-1	reviewed	silent	c.4596	p.L1532	0.998	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_Ubiquitin-like	-	no_errors
PITRM1	10531	genome.wustl.edu	37	10	3208485	3208485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	3208485	3208485	C	T	SNP	PITRM1	NM_014889.2	human	genbank	58_37c	-1	validated	silent	c.354	p.P118	0.001	superfamily_LuxS/MPP-like metallohydrolase	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_M16C_assoc	-	no_errors
PTCH1	5727	genome.wustl.edu	37	9	98218641	98218641	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	9	98218641	98218641	C	T	SNP	PTCH1	NM_000264.3	human	genbank	58_37c	-1	reviewed	missense	c.3223	p.G1075R	1.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
RAB3C	115827	genome.wustl.edu	37	5	58120940	58120940	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	5	58120940	58120940	C	T	SNP	RAB3C	NM_138453.2	human	genbank	58_37c	+1	provisional	silent	c.447	p.D149	0.789	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RIMS2	9699	genome.wustl.edu	37	8	104933950	104933950	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	104933950	104933950	A	G	SNP	RIMS2	NM_001100117.1	human	genbank	58_37c	+1	validated	missense	c.2134	p.T712A	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
SH2B3	10019	genome.wustl.edu	37	12	111885304	111885304	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	111885304	111885304	C	T	SNP	SH2B3	NM_005475.2	human	genbank	58_37c	+1	reviewed	missense	c.1192	p.R398C	0.984	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
SIRPA	140885	genome.wustl.edu	37	20	1902268	1902268	+	Missense_Mutation	SNP	G	G	A	rs143385810	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	20	1902268	1902268	G	A	SNP	SIRPA	NM_001040022.1	human	genbank	58_37c	+1	reviewed	missense	c.664	p.V222I	0.063	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	HMMPfam_C1-set,HMMSmart_IGc1,HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
SMCHD1	23347	genome.wustl.edu	37	18	2722567	2722567	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	18	2722567	2722567	G	T	SNP	SMCHD1	NM_015295.2	human	genbank	58_37c	+1	validated	missense	c.2509	p.V837F	1.000	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_SMC_hinge,superfamily_Smc hinge domain	-	no_errors
SNORD115-29	0	genome.wustl.edu	37	15	25468428	25468428	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	15	25468428	25468428	G	A	SNP	SNORD115-29	NR_003344.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.428	-	-	-	no_errors
SNORD115-30	0	genome.wustl.edu	37	15	25470422	25470422	+	RNA	SNP	G	G	A	rs72546393	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	15	25470422	25470422	G	A	SNP	SNORD115-30	NR_003345.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.994	-	-	-	no_errors
STAU2	27067	genome.wustl.edu	37	8	74585370	74585370	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	74585370	74585370	A	-	DEL	STAU2	NM_014393.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.286	p.Y96fs	1.000	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
TRPM8	79054	genome.wustl.edu	37	2	234878392	234878392	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	2	234878392	234878392	G	A	SNP	TRPM8	NM_024080.4	human	genbank	58_37c	+1	validated	nonsense	c.2079	p.W693*	1.000	NULL	HMMPfam_Ion_trans	-	no_errors
TTLL5	254173	genome.wustl.edu	37	14	76232419	76232419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	76232419	76232419	G	A	SNP	TTLL5	NM_015072.4	human	genbank	58_37c	+1	reviewed	missense	c.1723	p.A575T	1.000	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
ZNF44	51710	genome.wustl.edu	37	19	12385848	12385848	+	Missense_Mutation	SNP	C	C	G	rs11882046	byCluster;byFrequency;by1000genomes;byHapmap	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	12385848	12385848	C	G	SNP	ZNF44	NM_016264.3	human	genbank	58_37c	-1	validated	missense	c.131	p.G44A	0.055	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF644	84146	genome.wustl.edu	37	1	91405737	91405737	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	91405737	91405737	C	A	SNP	ZNF644	NM_201269.1	human	genbank	58_37c	-1	validated	nonsense	c.1174	p.E392*	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
