Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA9	10350	genome.wustl.edu	37	17	66981200	66981200	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	66981200	66981200	C	T	SNP	ABCA9	NM_080283.3	human	genbank	58_37c	-1	reviewed	silent	c.4278	p.K1426	0.991	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADCY6	112	genome.wustl.edu	37	12	49176644	49176644	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	49176644	49176644	C	G	SNP	ADCY6	NM_015270.3	human	genbank	58_37c	-1	reviewed	missense	c.574	p.V192L	0.188	NULL	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AHNAK2	113146	genome.wustl.edu	37	14	105409182	105409182	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	14	105409182	105409182	C	T	SNP	AHNAK2	NM_138420.2	human	genbank	58_37c	-1	validated	silent	c.12606	p.P4202	0.000	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
API5	8539	genome.wustl.edu	37	11	43364082	43364082	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	43364082	43364082	G	A	SNP	API5	NR_024625.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.992	-	-	-	no_errors
ASXL2	55252	genome.wustl.edu	37	2	25973203	25973203	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	2	25973203	25973203	G	A	SNP	ASXL2	NM_018263.4	human	genbank	58_37c	-1	validated	nonsense	c.1222	p.Q408*	1.000	NULL	NULL	-	no_errors
C1orf230	284485	genome.wustl.edu	37	1	151687003	151687003	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	151687003	151687003	G	T	SNP	C1orf230	ENST00000326413	human	ensembl	58_37c	+1	known	missense	c.19	p.V7L	0.022	NULL	HMMPfam_RIIa,superfamily_Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	-	no_errors
C7orf70	84792	genome.wustl.edu	37	7	6370439	6370439	+	Missense_Mutation	SNP	C	C	T	rs148485779	byFrequency	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	6370439	6370439	C	T	SNP	C7orf70	NM_001037163.1	human	genbank	58_37c	-1	validated	missense	c.347	p.R116Q	0.000	NULL	NULL	-	no_errors
DRD2	1813	genome.wustl.edu	37	11	113286299	113286299	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	113286299	113286299	G	A	SNP	DRD2	NM_000795.3	human	genbank	58_37c	-1	reviewed	silent	c.567	p.F189	0.903	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
EIF2C1	26523	genome.wustl.edu	37	1	36372581	36372581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	36372581	36372581	G	A	SNP	EIF2C1	NM_012199.2	human	genbank	58_37c	+1	reviewed	missense	c.1443	p.M481I	1.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
GALNT7	51809	genome.wustl.edu	37	4	174216642	174216642	+	Nonsense_Mutation	SNP	C	C	T	rs190188302	by1000genomes	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	4	174216642	174216642	C	T	SNP	GALNT7	NM_017423.2	human	genbank	58_37c	+1	reviewed	nonsense	c.850	p.R284*	1.000	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GBE1	2632	genome.wustl.edu	37	3	81695559	81695559	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	3	81695559	81695559	A	C	SNP	GBE1	ENST00000264326	human	ensembl	58_37c	-1	known	missense	c.766	p.F256V	1.000	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases	HMMPfam_CBM_48,HMMPfam_Alpha-amylase,HMMPfam_Alpha-amylase_C,HMMSmart_SM00642,superfamily_E set domains,superfamily_(Trans)glycosidases,superfamily_Glycosyl hydrolase domain	-	no_errors
INTS1	26173	genome.wustl.edu	37	7	1527532	1527532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	1527532	1527532	G	A	SNP	INTS1	NM_001080453.2	human	genbank	58_37c	-1	validated	missense	c.2380	p.R794C	0.996	NULL	PatternScan_ACTININ_1	-	no_errors
KIAA1377	57562	genome.wustl.edu	37	11	101833078	101833078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	101833078	101833078	G	A	SNP	KIAA1377	NM_020802.2	human	genbank	58_37c	+1	validated	missense	c.1312	p.E438K	0.144	NULL	NULL	-	no_errors
LANCL2	55915	genome.wustl.edu	37	7	55492947	55492947	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	55492947	55492947	G	T	SNP	LANCL2	NM_018697.3	human	genbank	58_37c	+1	validated	missense	c.1009	p.V337F	0.562	HMMPfam_LANC_like,superfamily_Glyco_trans_6hp	HMMPfam_LANC_like,superfamily_Glyco_trans_6hp	-	no_errors
LNX1	84708	genome.wustl.edu	37	4	54364837	54364837	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	4	54364837	54364837	G	T	SNP	LNX1	NM_001126328.1	human	genbank	58_37c	-1	reviewed	silent	c.949	p.R317	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
LOC646096	646096	genome.wustl.edu	37	15	20496657	20496657	+	RNA	SNP	C	C	T	rs7180374	byCluster;byFrequency;by2Hit2Allele	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	15	20496657	20496657	C	T	SNP	LOC646096	XR_040858.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.921	-	-	-	no_errors
LRIG3	121227	genome.wustl.edu	37	12	59271347	59271347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	59271347	59271347	C	T	SNP	LRIG3	NM_153377.3	human	genbank	58_37c	-1	provisional	missense	c.2371	p.D791N	1.000	NULL	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_RNI-like	-	no_errors
LRIT2	340745	genome.wustl.edu	37	10	85984158	85984158	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	85984158	85984158	A	T	SNP	LRIT2	NM_001017924.2	human	genbank	58_37c	-1	validated	missense	c.823	p.L275M	0.982	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMPfam_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
LRP12	29967	genome.wustl.edu	37	8	105503549	105503552	+	Frame_Shift_Del	DEL	GTGA	GTGA	-	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	GTGA	GTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	8	105503549	105503552	GTGA	-	DEL	LRP12	NM_013437.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1932_1929	p.H644fs	1.000:1.000:1.000:0.954	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
MIR2113	0	genome.wustl.edu	37	6	98472466	98472466	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	6	98472466	98472466	G	A	SNP	MIR2113	ENST00000459007	human	ensembl	58_37c	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MTOR	2475	genome.wustl.edu	37	1	11313969	11313969	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	11313969	11313969	T	C	SNP	MTOR	NM_004958.3	human	genbank	58_37c	-1	reviewed	missense	c.767	p.N256S	1.000	superfamily_ARM-type_fold	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
MYL1	4632	genome.wustl.edu	37	2	211159027	211159027	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	2	211159027	211159027	G	C	SNP	MYL1	NM_079420.2	human	genbank	58_37c	-1	reviewed	missense	c.420	p.D140E	1.000	HMMSmart_SM00054,superfamily_EF-hand	HMMSmart_SM00054,superfamily_EF-hand	-	no_errors
MYO1F	4542	genome.wustl.edu	37	19	8592341	8592341	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	19	8592341	8592341	C	T	SNP	MYO1F	NM_012335.3	human	genbank	58_37c	-1	validated	silent	c.2355	p.T785	0.554	HMMPfam_Myosin_TH1	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NEK9	91754	genome.wustl.edu	37	14	75580953	75580953	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	14	75580953	75580953	G	A	SNP	NEK9	NM_033116.4	human	genbank	58_37c	-1	validated	nonsense	c.826	p.Q276*	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_RCC1,PatternScan_RCC1_1,PatternScan_RCC1_2,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NHLRC3	387921	genome.wustl.edu	37	13	39612843	39612843	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	13	39612843	39612843	C	G	SNP	NHLRC3	NM_001012754.2	human	genbank	58_37c	+1	validated	missense	c.67	p.R23G	0.002	NULL	HMMPfam_NHL,superfamily_SSF101898	-	no_errors
NOTCH2	4853	genome.wustl.edu	37	1	120484229	120484229	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	120484229	120484229	G	-	DEL	NOTCH2	NM_024408.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2901	p.Y967fs	0.844	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
NOX4	50507	genome.wustl.edu	37	11	89166019	89166019	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	89166019	89166019	C	T	SNP	NOX4	NM_016931.3	human	genbank	58_37c	-1	reviewed	missense	c.481	p.G161S	1.000	HMMPfam_Ferric_reduct	HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
OPRM1	4988	genome.wustl.edu	37	6	154414532	154414532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	6	154414532	154414532	G	A	SNP	OPRM1	NM_001008505.1	human	genbank	58_37c	+1	reviewed	missense	c.1292	p.R431H	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2T12	127064	genome.wustl.edu	37	1	248458340	248458340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	248458340	248458340	C	T	SNP	OR2T12	NM_001004692.1	human	genbank	58_37c	-1	provisional	missense	c.541	p.V181M	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
P2RX7	5027	genome.wustl.edu	37	12	121615126	121615126	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	121615126	121615126	C	T	SNP	P2RX7	NM_002562.4	human	genbank	58_37c	+1	reviewed	silent	c.1065	p.I355	0.998	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
POLL	27343	genome.wustl.edu	37	10	103339232	103339232	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	103339232	103339232	T	C	SNP	POLL	NM_013274.3	human	genbank	58_37c	-1	reviewed	missense	c.1706	p.E569G	1.000	HMMSmart_POLXc,superfamily_SSF81301	superfamily_BRCT,HMMSmart_POLXc,HMMSmart_HhH1,superfamily_DNApol_B_N_like,HMMPfam_DNA_pol_lambd_f,superfamily_DNA_pol_lambd_fingers_domain,PatternScan_DNA_POLYMERASE_X,superfamily_SSF81301	-	no_errors
PRDM8	56978	genome.wustl.edu	37	4	81124519	81124519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	4	81124519	81124519	C	T	SNP	PRDM8	NM_001099403.1	human	genbank	58_37c	+1	validated	missense	c.1903	p.R635C	1.000	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,PatternScan_TUBULIN,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PRPF4	9128	genome.wustl.edu	37	9	116038854	116038854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	9	116038854	116038854	C	T	SNP	PRPF4	NM_004697.3	human	genbank	58_37c	+1	provisional	silent	c.57	p.D19	0.926	NULL	HMMSmart_SM00320,HMMSmart_SM00500,superfamily_WD40 repeat-like,HMMPfam_PRP4,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_PEROXIDASE_2	-	no_errors
RASA3	22821	genome.wustl.edu	37	13	114806570	114806570	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	13	114806570	114806570	C	G	SNP	RASA3	NM_007368.2	human	genbank	58_37c	-1	reviewed	missense	c.278	p.G93A	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_BTK,HMMSmart_BTK,HMMPfam_PH,HMMSmart_PH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729	-	no_errors
RELA	5970	genome.wustl.edu	37	11	65427261	65427261	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	11	65427261	65427261	T	C	SNP	RELA	NM_001145138.1	human	genbank	58_37c	-1	validated	splice_site	c.428-2	e6-2	0.911	-	-	-	no_errors
RPS5	6193	genome.wustl.edu	37	19	58904744	58904744	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	19	58904744	58904744	G	C	SNP	RPS5	NM_001009.3	human	genbank	58_37c	+1	reviewed	missense	c.337	p.V113L	1.000	HMMPfam_Ribosomal_S7,superfamily_Ribosomal protein S7	HMMPfam_Ribosomal_S7,PatternScan_RIBOSOMAL_S7,superfamily_Ribosomal protein S7	-	no_errors
SLC6A12	6539	genome.wustl.edu	37	12	306621	306621	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	12	306621	306621	C	A	SNP	SLC6A12	NM_001122847.1	human	genbank	58_37c	-1	validated	missense	c.997	p.A333S	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SLCO5A1	81796	genome.wustl.edu	37	8	70585447	70585447	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	8	70585447	70585447	C	T	SNP	SLCO5A1	NM_030958.2	human	genbank	58_37c	-1	reviewed	missense	c.2204	p.R735H	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
SORBS1	10580	genome.wustl.edu	37	10	97158839	97158839	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	97158839	97158839	G	A	SNP	SORBS1	NM_001034954.1	human	genbank	58_37c	-1	validated	missense	c.1093	p.R365W	0.039	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459	-	no_errors
SVIL	6840	genome.wustl.edu	37	10	29756715	29756715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	10	29756715	29756715	G	A	SNP	SVIL	NM_021738.2	human	genbank	58_37c	-1	reviewed	missense	c.5933	p.A1978V	1.000	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
TIAM2	26230	genome.wustl.edu	37	6	155450938	155450938	+	Missense_Mutation	SNP	C	C	T	rs147519937	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	6	155450938	155450938	C	T	SNP	TIAM2	NM_012454.3	human	genbank	58_37c	+1	reviewed	missense	c.581	p.P194L	0.994	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PH domain-like	-	no_errors
TIMM44	10469	genome.wustl.edu	37	19	8006002	8006002	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	19	8006002	8006002	G	A	SNP	TIMM44	NM_006351.3	human	genbank	58_37c	-1	validated	silent	c.126	p.G42	0.000	NULL	HMMPfam_Tim44	-	no_errors
TMCC1	23023	genome.wustl.edu	37	3	129546708	129546708	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	3	129546708	129546708	C	G	SNP	TMCC1	NM_001017395.3	human	genbank	58_37c	-1	validated	missense	c.514	p.A172P	1.000	NULL	HMMPfam_Tmemb_cc2	-	no_errors
TMEM101	84336	genome.wustl.edu	37	17	42092199	42092199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	42092199	42092199	C	T	SNP	TMEM101	NM_032376.2	human	genbank	58_37c	-1	provisional	missense	c.122	p.R41K	1.000	NULL	NULL	-	no_errors
TNPO1	3842	genome.wustl.edu	37	5	72187661	72187661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	5	72187661	72187661	C	T	SNP	TNPO1	NM_002270.3	human	genbank	58_37c	+1	reviewed	missense	c.1726	p.P576S	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_IBN_N,superfamily_ARM repeat	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577566	7577567	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	17	7577566	7577567	-	A	INS	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.715_714	p.N238fs	1.000:0.999	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSPAN13	27075	genome.wustl.edu	37	7	16816717	16816717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	7	16816717	16816717	C	T	SNP	TSPAN13	ENST00000440020	human	ensembl	58_37c	+1	known	missense	c.220	p.R74C	1.000	NULL	NULL	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19404496	19404496	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	1	19404496	19404496	C	G	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	missense	c.15298	p.V5100L	1.000	NULL	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
VAPA	9218	genome.wustl.edu	37	18	9931897	9931897	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	18	9931897	9931897	G	C	SNP	VAPA	NM_003574.5	human	genbank	58_37c	+1	reviewed	missense	c.170	p.R57P	1.000	HMMPfam_Motile_Sperm,superfamily_PapD-like	HMMPfam_Motile_Sperm,superfamily_PapD-like	-	no_errors
WDR76	79968	genome.wustl.edu	37	15	44149283	44149283	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	15	44149283	44149283	C	A	SNP	WDR76	NM_024908.3	human	genbank	58_37c	+1	validated	missense	c.1331	p.T444N	0.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZFR	51663	genome.wustl.edu	37	5	32397416	32397416	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E6-01A-11W-A050-09	TCGA-BH-A0E6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1c55939a-ae58-4ed9-8a6e-01bae8ac12f7	d4833cef-9a84-4e99-a96c-54ba25876fda	5	32397416	32397416	C	T	SNP	ZFR	NM_016107.3	human	genbank	58_37c	-1	validated	missense	c.1742	p.R581Q	1.000	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_ZnF_U1,HMMPfam_DZF,HMMSmart_DZF,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
