Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCG1	9619	genome.wustl.edu	37	21	43693544	43693544	+	Missense_Mutation	SNP	T	T	A	rs75083034	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	21	43693544	43693544	T	A	SNP	ABCG1	NM_004915.3	human	genbank	58_37c	+1	reviewed	missense	c.536	p.M179K	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC2_membrane,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ATXN10	25814	genome.wustl.edu	37	22	46088888	46088888	+	Silent	SNP	G	G	A	rs61733598	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	22	46088888	46088888	G	A	SNP	ATXN10	NM_013236.3	human	genbank	58_37c	+1	reviewed	silent	c.321	p.T107	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Atx10homo_assoc	-	no_errors
C1orf183	55924	genome.wustl.edu	37	1	112270004	112270004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	1	112270004	112270004	G	A	SNP	C1orf183	NM_019099.4	human	genbank	58_37c	-1	validated	silent	c.480	p.N160	0.999	NULL	NULL	-	no_errors
C20orf132	140699	genome.wustl.edu	37	20	35772133	35772133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	20	35772133	35772133	A	G	SNP	C20orf132	ENST00000400441	human	ensembl	58_37c	-1	known	missense	c.1322	p.F441S	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
CACNA1D	776	genome.wustl.edu	37	3	53844194	53844194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	3	53844194	53844194	C	T	SNP	CACNA1D	NM_000720.2	human	genbank	58_37c	+1	validated	missense	c.6121	p.R2041C	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324	-	no_errors
CHGB	1114	genome.wustl.edu	37	20	5903619	5903619	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	20	5903619	5903619	C	T	SNP	CHGB	NM_001819.2	human	genbank	58_37c	+1	reviewed	nonsense	c.829	p.R277*	0.979	HMMPfam_Granin	HMMPfam_Granin,PatternScan_GRANINS_1,PatternScan_GRANINS_2	-	no_errors
CNTNAP5	129684	genome.wustl.edu	37	2	125504906	125504906	+	Silent	SNP	C	C	T	rs35749633	byCluster;by1000genomes	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	2	125504906	125504906	C	T	SNP	CNTNAP5	NM_130773.2	human	genbank	58_37c	+1	reviewed	silent	c.2175	p.D725	0.080	superfamily_ConA_like_lec_gl	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_LamG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C,HMMPfam_EGF,HMMSmart_EGF,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
DCAF8L2	347442	genome.wustl.edu	37	X	27765399	27765399	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	X	27765399	27765399	A	G	SNP	DCAF8L2	NM_001136533.1	human	genbank	58_37c	+1	provisional	silent	c.387	p.E129	0.009	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
EWSR1	2130	genome.wustl.edu	37	22	29668221	29668221	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	22	29668221	29668221	C	-	DEL	EWSR1	NM_005243.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.30	p.Q11fs	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,superfamily_Znf265 first zinc-finger domain	-	no_errors
GAP43	2596	genome.wustl.edu	37	3	115395170	115395170	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	3	115395170	115395170	G	T	SNP	GAP43	NM_001130064.1	human	genbank	58_37c	+1	reviewed	missense	c.449	p.G150V	0.106	HMMPfam_Neuromodulin	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Neuromodulin,PatternScan_NEUROMODULIN_2,HMMPfam_Neuromodulin_N	-	no_errors
GBP6	163351	genome.wustl.edu	37	1	89843685	89843685	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	1	89843685	89843685	G	T	SNP	GBP6	NM_198460.2	human	genbank	58_37c	+1	validated	missense	c.342	p.W114C	1.000	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GULP1	51454	genome.wustl.edu	37	2	189405977	189405977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	2	189405977	189405977	T	C	SNP	GULP1	NM_016315.2	human	genbank	58_37c	+1	validated	missense	c.331	p.F111L	1.000	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	HMMPfam_PID,HMMSmart_SM00462,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_PH domain-like	-	no_errors
INO80B	83444	genome.wustl.edu	37	2	74684835	74684835	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	2	74684835	74684835	G	C	SNP	INO80B	NM_031288.2	human	genbank	58_37c	+1	validated	silent	c.915	p.P305	0.002	HMMPfam_zf-HIT	HMMPfam_PAPA-1,HMMPfam_zf-HIT	-	no_errors
LMBR1L	55716	genome.wustl.edu	37	12	49496159	49496159	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	12	49496159	49496159	T	A	SNP	LMBR1L	NM_018113.2	human	genbank	58_37c	-1	validated	missense	c.770	p.N257I	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
LOC100287927	0	genome.wustl.edu	37	22	23248508	23248508	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	22	23248508	23248508	G	A	SNP	LOC100287927	XM_002343770.1	human	genbank	58_37c	-1	model	silent	c.276	p.C92	0.000	NULL	PatternScan_TUBULIN_B_AUTOREG	-	no_errors
LRRC41	10489	genome.wustl.edu	37	1	46768864	46768864	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	1	46768864	46768864	G	C	SNP	LRRC41	NM_006369.4	human	genbank	58_37c	-1	validated	missense	c.131	p.P44R	1.000	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56184070	56184088	+	Frame_Shift_Del	DEL	GTATGGAAGGAGCTGTGAT	GTATGGAAGGAGCTGTGAT	-	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	GTATGGAAGGAGCTGTGAT	GTATGGAAGGAGCTGTGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	5	56184070	56184088	GTATGGAAGGAGCTGTGAT	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.4275_4293	p.R1428fs	1.000:1.000:1.000:1.000:1.000:0.998:0.323:0.946:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
NAT15	79903	genome.wustl.edu	37	16	3534810	3534810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	16	3534810	3534810	G	A	SNP	NAT15	ENST00000421765	human	ensembl	58_37c	+1	known	missense	c.457	p.G153R	0.005	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
RUNX1T1	862	genome.wustl.edu	37	8	92972572	92972572	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	8	92972572	92972572	C	T	SNP	RUNX1T1	NM_175634.1	human	genbank	58_37c	-1	reviewed	silent	c.1713	p.T571	0.850	NULL	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2	-	no_errors
SACS	26278	genome.wustl.edu	37	13	23930148	23930148	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	13	23930148	23930148	T	G	SNP	SACS	NM_014363.4	human	genbank	58_37c	-1	reviewed	splice_site	c.605-2	e7-2	1.000	-	-	-	no_errors
SCUBE1	80274	genome.wustl.edu	37	22	43603586	43603586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	22	43603586	43603586	C	T	SNP	SCUBE1	NM_173050.2	human	genbank	58_37c	-1	validated	missense	c.2768	p.R923H	0.980	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMSmart_EGF_CA,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
SEZ6	124925	genome.wustl.edu	37	17	27308950	27308950	+	Missense_Mutation	SNP	C	C	T	rs61737975	by1000genomes	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	17	27308950	27308950	C	T	SNP	SEZ6	NM_178860.4	human	genbank	58_37c	-1	validated	missense	c.163	p.V55I	0.028	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	no_errors
SMCHD1	23347	genome.wustl.edu	37	18	2700752	2700752	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	18	2700752	2700752	C	T	SNP	SMCHD1	NM_015295.2	human	genbank	58_37c	+1	validated	missense	c.1483	p.P495S	1.000	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_SMC_hinge,superfamily_Smc hinge domain	-	no_errors
TSPYL2	64061	genome.wustl.edu	37	X	53112279	53112279	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	X	53112279	53112279	T	G	SNP	TSPYL2	NM_022117.3	human	genbank	58_37c	+1	reviewed	missense	c.599	p.V200G	0.968	NULL	HMMPfam_NAP	-	no_errors
UGT2A2	0	genome.wustl.edu	37	4	70504971	70504971	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	4	70504971	70504971	T	A	SNP	UGT2A2	NM_001105677.1	human	genbank	58_37c	-1	inferred	missense	c.364	p.I122F	0.001	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
ZNF45	7596	genome.wustl.edu	37	19	44419341	44419341	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H6-01A-21W-A071-09	TCGA-BH-A0H6-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bbed00d2-9791-464d-a1ba-28fd56a0504e	6ddf4ce5-5956-4394-af6e-f840573ac67e	19	44419341	44419341	G	A	SNP	ZNF45	NM_003425.3	human	genbank	58_37c	-1	validated	silent	c.247	p.L83	0.021	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
