Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB11	8647	genome.wustl.edu	37	2	169842673	169842673	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	169842673	169842673	C	T	SNP	ABCB11	NM_003742.2	human	genbank	58_37c	-1	reviewed	missense	c.1030	p.G344S	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACCN4	55515	genome.wustl.edu	37	2	220402756	220402756	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	220402756	220402756	T	C	SNP	ACCN4	NM_018674.4	human	genbank	58_37c	+1	reviewed	silent	c.1989	p.D663	1.000	NULL	HMMPfam_ASC,PatternScan_ASC	-	no_errors
AKAP13	11214	genome.wustl.edu	37	15	86123003	86123003	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	15	86123003	86123003	G	A	SNP	AKAP13	NM_006738.4	human	genbank	58_37c	+1	reviewed	silent	c.1704	p.T568	0.000	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_RII_binding_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
C5orf37	134359	genome.wustl.edu	37	5	74998503	74998503	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	5	74998503	74998503	C	A	SNP	POC5	NM_001099271.1	human	genbank	58_37c	-1	validated	missense	c.440	p.S147I	0.000	NULL	NULL	-	no_errors
CAMTA2	23125	genome.wustl.edu	37	17	4876086	4876086	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	17	4876086	4876086	T	G	SNP	CAMTA2	NM_015099.3	human	genbank	58_37c	-1	validated	silent	c.2481	p.P827	0.960	superfamily_Ankyrin repeat	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CD209	30835	genome.wustl.edu	37	19	7807832	7807832	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	7807832	7807832	G	T	SNP	CD209	NR_026692.1	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	0.002	-	-	-	no_errors
CHRNA1	1134	genome.wustl.edu	37	2	175624061	175624061	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	175624061	175624061	G	T	SNP	CHRNA1	NM_001039523.2	human	genbank	58_37c	-1	reviewed	missense	c.232	p.Q78K	1.000	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
COL19A1	1310	genome.wustl.edu	37	6	70639432	70639432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	6	70639432	70639432	G	A	SNP	COL19A1	NM_001858.4	human	genbank	58_37c	+1	reviewed	missense	c.506	p.R169H	1.000	HMMSmart_TSPN,superfamily_ConA_like_lec_gl	HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl	-	no_errors
CXorf40A	91966	genome.wustl.edu	37	X	148627391	148627391	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	X	148627391	148627391	T	G	SNP	CXorf40A	NM_178124.4	human	genbank	58_37c	+1	validated	missense	c.215	p.L72R	0.008	NULL	NULL	-	no_errors
CYP4V2	285440	genome.wustl.edu	37	4	187113181	187113185	+	Frame_Shift_Del	DEL	GGACG	GGACG	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	GGACG	GGACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	4	187113181	187113185	GGACG	-	DEL	CYP4V2	NM_207352.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.204_208	p.D69fs	0.000:0.000:0.000:0.000:0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCHS2	54798	genome.wustl.edu	37	4	155180776	155180776	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	4	155180776	155180776	T	A	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	missense	c.5345	p.D1782V	1.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DHX37	57647	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	12	125465270	125465272	CTC	-	DEL	DHX37	NM_032656.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.504_502	p.E168in_frame_del	0.904:0.904:0.905	NULL	HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
EIF5B	9669	genome.wustl.edu	37	2	99993052	99993052	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	99993052	99993052	C	T	SNP	EIF5B	NM_015904.3	human	genbank	58_37c	+1	reviewed	missense	c.1795	p.R599W	1.000	NULL	HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000247170	0	genome.wustl.edu	37	10	74767777	74767778	+	RNA	INS	-	-	TACA	rs66792600	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	10	74767777	74767778	-	TACA	INS	ENSG00000247170	ENST00000502140	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.299:0.381	-	-	-	no_errors
ENSG00000247765	0	genome.wustl.edu	37	15	21941718	21941718	+	RNA	SNP	C	C	G	rs1568351	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	15	21941718	21941718	C	G	SNP	ENSG00000247765	ENST00000500487	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors
FLJ42393	401105	genome.wustl.edu	37	3	187896783	187896784	+	RNA	DEL	AG	AG	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	3	187896783	187896784	AG	-	DEL	FLJ42393	NR_024413.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.003:0.002	-	-	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240371704	240371704	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	1	240371704	240371704	C	A	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.3592	p.P1198T	1.000	HMMSmart_FH2,HMMPfam_Drf_FH1	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
GOLGA6L1	0	genome.wustl.edu	37	15	22742829	22742829	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	15	22742829	22742829	T	G	SNP	GOLGA6L1	NM_001001413.3	human	genbank	58_37c	+1	provisional	missense	c.1214	p.I405R	0.161	NULL	NULL	-	no_errors
GPKOW	27238	genome.wustl.edu	37	X	48972279	48972279	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	X	48972279	48972279	T	C	SNP	GPKOW	NM_015698.4	human	genbank	58_37c	-1	validated	missense	c.1106	p.N369S	0.863	NULL	HMMPfam_G-patch,HMMSmart_G_patch,HMMPfam_KOW,HMMSmart_KOW	-	no_errors
HLA-DMA	3108	genome.wustl.edu	37	6	32917498	32917498	+	Missense_Mutation	SNP	C	G	G	rs145211304	byFrequency	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	6	32917498	32917498	C	G	SNP	HLA-DMA	NM_006120.3	human	genbank	58_37c	-1	reviewed	missense	c.542	p.G181A	0.998	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	HMMPfam_MHC_II_alpha,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
HSPA5	3309	genome.wustl.edu	37	9	128001807	128001807	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	9	128001807	128001807	G	A	SNP	HSPA5	NM_005347.3	human	genbank	58_37c	-1	validated	silent	c.498	p.T166	0.959	HMMPfam_HSP70,superfamily_Actin-like ATPase domain	HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain	-	no_errors
INSL5	10022	genome.wustl.edu	37	1	67266829	67266829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	1	67266829	67266829	C	A	SNP	INSL5	NM_005478.3	human	genbank	58_37c	-1	reviewed	missense	c.76	p.V26L	0.028	HMMSmart_IlGF,superfamily_Insulin-like	PatternScan_INSULIN,HMMSmart_IlGF,superfamily_Insulin-like	-	no_errors
LOC442421	442421	genome.wustl.edu	37	9	66501003	66501003	+	RNA	SNP	G	C	C	rs2818647	byCluster;byFrequency;by2Hit2Allele;bySubmitter	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	9	66501003	66501003	G	C	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
MDN1	23195	genome.wustl.edu	37	6	90402292	90402292	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	6	90402292	90402292	C	G	SNP	MDN1	NM_014611.1	human	genbank	58_37c	-1	provisional	missense	c.10457	p.G3486A	0.234	NULL	HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like	-	no_errors
MUC2	4583	genome.wustl.edu	37	11	1090919	1090919	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	11	1090919	1090919	A	C	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.3814	p.T1272P	0.002	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MYH8	4626	genome.wustl.edu	37	17	10303934	10303934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	17	10303934	10303934	G	A	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.3508	p.R1170W	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NR4A3	8013	genome.wustl.edu	37	9	102626006	102626006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	9	102626006	102626006	G	A	SNP	NR4A3	NM_173200.1	human	genbank	58_37c	+1	reviewed	missense	c.1771	p.E591K	0.977	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
OR6P1	0	genome.wustl.edu	37	1	158532693	158532693	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	1	158532693	158532693	G	C	SNP	OR6P1	ENST00000334632	human	ensembl	58_37c	-1	known	silent	c.702	p.R234	0.006	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178916929	178916937	+	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	GGCAACCGT	GGCAACCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	3	178916929	178916937	GGCAACCGT	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.316_324	p.GNR106in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIWIL1	9271	genome.wustl.edu	37	12	130827144	130827144	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	12	130827144	130827144	G	A	SNP	PIWIL1	NM_004764.3	human	genbank	58_37c	+1	reviewed	missense	c.8	p.G3E	1.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain	-	no_errors
RIF1	55183	genome.wustl.edu	37	2	152320145	152320145	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	2	152320145	152320145	A	T	SNP	RIF1	NM_018151.4	human	genbank	58_37c	+1	reviewed	missense	c.4111	p.N1371Y	0.024	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
RP1L1	94137	genome.wustl.edu	37	8	10466220	10466220	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	8	10466220	10466220	G	T	SNP	RP1L1	NM_178857.5	human	genbank	58_37c	-1	validated	silent	c.5388	p.G1796	0.000	HMMPfam_S-antigen	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
SERPINA1	5265	genome.wustl.edu	37	14	94845800	94845800	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	14	94845800	94845800	C	T	SNP	SERPINA1	NM_000295.4	human	genbank	58_37c	-1	reviewed	splice_site	c.1065+1	e3+1	1.000	-	-	-	no_errors
SPATA22	84690	genome.wustl.edu	37	17	3346557	3346557	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	17	3346557	3346557	C	A	SNP	SPATA22	NM_032598.4	human	genbank	58_37c	-1	validated	missense	c.811	p.D271Y	0.994	NULL	NULL	-	no_errors
TADA2B	93624	genome.wustl.edu	37	4	7056249	7056260	+	In_Frame_Del	DEL	TGAAGCGCAAGA	TGAAGCGCAAGA	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	TGAAGCGCAAGA	TGAAGCGCAAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	4	7056249	7056260	TGAAGCGCAAGA	-	DEL	TADA2B	NM_152293.2	human	genbank	58_37c	+1	validated	in_frame_del	c.731_742	p.KRKI245in_frame_del	0.000:0.003:0.266:0.587:0.664:0.990:0.991:0.574:0.983:0.996:0.990:0.987	NULL	HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
TMEM30B	161291	genome.wustl.edu	37	14	61746982	61746988	+	Frame_Shift_Del	DEL	GCGCGCA	GCGCGCA	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	GCGCGCA	GCGCGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	14	61746982	61746988	GCGCGCA	-	DEL	TMEM30B	NM_001017970.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.884_878	p.V293fs	0.993:0.880:0.811:0.798:0.996:1.000:1.000	HMMPfam_CDC50	HMMPfam_CDC50	-	no_errors
TMEM30B	161291	genome.wustl.edu	37	14	61746991	61747001	+	Frame_Shift_Del	DEL	GGGTAGTTGTA	GGGTAGTTGTA	-	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	GGGTAGTTGTA	GGGTAGTTGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	14	61746991	61747001	GGGTAGTTGTA	-	DEL	TMEM30B	NM_001017970.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.875_865	p.Y289fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_CDC50	HMMPfam_CDC50	-	no_errors
TRBV5-6	0	genome.wustl.edu	37	7	142131461	142131461	+	Silent	SNP	G	G	A	rs361335	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	7	142131461	142131461	G	A	SNP	TRBV5-6	ENST00000390375	human	ensembl	58_37c	-1	known	silent	c.294	p.N98	0.000	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon:bad_bp_length_for_coding_region
TSTA3	7264	genome.wustl.edu	37	8	144696871	144696871	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	8	144696871	144696871	C	T	SNP	TSTA3	ENST00000433984	human	ensembl	58_37c	-1	known	missense	c.476	p.R159H	0.001	NULL	HMMPfam_Epimerase,superfamily_NAD(P)-bd	-	no_errors
ZNF324	25799	genome.wustl.edu	37	19	58983206	58983206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	58983206	58983206	C	T	SNP	ZNF324	NM_014347.1	human	genbank	58_37c	+1	provisional	silent	c.1347	p.G449	0.023	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF420	147923	genome.wustl.edu	37	19	37619086	37619086	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	37619086	37619086	A	G	SNP	ZNF420	NM_144689.3	human	genbank	58_37c	+1	provisional	missense	c.1193	p.K398R	0.995	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF443	10224	genome.wustl.edu	37	19	12541421	12541421	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	12541421	12541421	T	C	SNP	ZNF443	NM_005815.4	human	genbank	58_37c	-1	validated	missense	c.1565	p.H522R	0.452	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF606	80095	genome.wustl.edu	37	19	58489891	58489891	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	19	58489891	58489891	C	G	SNP	ZNF606	NM_025027.3	human	genbank	58_37c	-1	validated	missense	c.2157	p.E719D	0.999	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF608	57507	genome.wustl.edu	37	5	123982737	123982737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01A-11W-A050-09	TCGA-BH-A0HU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b46f2619-5937-4847-bb38-fe6022225ab9	630a5659-c666-4da0-bb90-969cf071fde3	5	123982737	123982737	G	A	SNP	ZNF608	NM_020747.2	human	genbank	58_37c	-1	validated	silent	c.3340	p.L1114	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
