Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ASCC2	84164	genome.wustl.edu	37	22	30197090	30197090	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	30197090	30197090	T	C	SNP	ASCC2	NM_032204.3	human	genbank	58_37c	-1	provisional	silent	c.1578	p.K526	0.991	NULL	HMMPfam_CUE,HMMSmart_SM00546	-	no_errors
ATG2B	55102	genome.wustl.edu	37	14	96809459	96809459	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	14	96809459	96809459	T	G	SNP	ATG2B	NM_018036.5	human	genbank	58_37c	-1	validated	silent	c.741	p.P247	0.997	NULL	HMMPfam_ATG_C	-	no_errors
ATRX	546	genome.wustl.edu	37	X	76938781	76938781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	76938781	76938781	G	A	SNP	ATRX	NM_000489.3	human	genbank	58_37c	-1	reviewed	missense	c.1967	p.S656F	0.998	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BNC2	54796	genome.wustl.edu	37	9	16436220	16436220	+	Missense_Mutation	SNP	C	C	T	rs150371741	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	16436220	16436220	C	T	SNP	BNC2	NM_017637.5	human	genbank	58_37c	-1	validated	missense	c.1972	p.D658N	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
C2orf71	388939	genome.wustl.edu	37	2	29296696	29296696	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	29296696	29296696	T	C	SNP	C2orf71	NM_001029883.1	human	genbank	58_37c	-1	provisional	silent	c.432	p.K144	0.000	NULL	NULL	-	no_errors
C3	718	genome.wustl.edu	37	19	6718310	6718310	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	6718310	6718310	G	A	SNP	C3	NM_000064.2	human	genbank	58_37c	-1	reviewed	silent	c.381	p.S127	0.604	HMMPfam_A2M_N	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,superfamily_TIMP-like,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylotoxins (complement system),HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
CAND1	55832	genome.wustl.edu	37	12	67686481	67686481	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	67686481	67686481	G	A	SNP	CAND1	NM_018448.3	human	genbank	58_37c	+1	validated	missense	c.292	p.D98N	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_TIP120,superfamily_ARM repeat	-	no_errors
CBWD1	55871	genome.wustl.edu	37	9	156515	156515	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	156515	156515	C	G	SNP	CBWD1	NM_018491.3	human	genbank	58_37c	-1	validated	missense	c.541	p.E181Q	1.000	HMMPfam_cobW,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Hypothetical protein YjiA C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CCDC111	201973	genome.wustl.edu	37	4	185606574	185606574	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	185606574	185606574	G	C	SNP	CCDC111	NM_152683.2	human	genbank	58_37c	+1	validated	missense	c.1108	p.E370Q	0.992	NULL	HMMPfam_DNA_primase_S,HMMPfam_Herpes_UL52	-	no_errors
CEP78	84131	genome.wustl.edu	37	9	80880403	80880403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	80880403	80880403	G	A	SNP	CEP78	NM_001098802.1	human	genbank	58_37c	+1	validated	missense	c.1744	p.E582K	1.000	NULL	superfamily_SSF52047	-	no_errors
CERK	64781	genome.wustl.edu	37	22	47095261	47095263	+	In_Frame_Del	DEL	TGA	TGA	-	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	TGA	TGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	47095261	47095263	TGA	-	DEL	CERK	NM_022766.5	human	genbank	58_37c	-1	validated	in_frame_del	c.892_890	p.I297in_frame_del	0.999:0.998:1.000	NULL	HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMSmart_PH	-	no_errors
CES7	221223	genome.wustl.edu	37	16	55907861	55907861	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	16	55907861	55907861	C	T	SNP	CES7	NM_001143685.1	human	genbank	58_37c	-1	validated	silent	c.162	p.V54	0.757	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_alpha/beta-Hydrolases	-	no_errors
CFTR	1080	genome.wustl.edu	37	7	117306992	117306992	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	117306992	117306992	G	T	SNP	CFTR	NM_000492.3	human	genbank	58_37c	+1	reviewed	missense	c.4273	p.D1425Y	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CLCN5	1184	genome.wustl.edu	37	X	49853534	49853534	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	49853534	49853534	C	G	SNP	CLCN5	NM_001127898.1	human	genbank	58_37c	+1	reviewed	silent	c.1737	p.A579	0.999	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel	HMMPfam_CBS,HMMSmart_SM00116,HMMPfam_Voltage_CLC,superfamily_Clc chloride channel,superfamily_CBS-domain	-	no_errors
CTNNA1	1495	genome.wustl.edu	37	5	138260325	138260325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	138260325	138260325	C	T	SNP	CTNNA1	NM_001903.2	human	genbank	58_37c	+1	validated	missense	c.1673	p.S558L	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
CYP2S1	29785	genome.wustl.edu	37	19	41707218	41707218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	41707218	41707218	C	T	SNP	CYP2S1	NM_030622.6	human	genbank	58_37c	+1	reviewed	missense	c.917	p.T306M	0.738	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
CYP7B1	9420	genome.wustl.edu	37	8	65509394	65509394	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	8	65509394	65509394	A	-	DEL	CYP7B1	NM_004820.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1326	p.F442fs	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450	-	no_errors
DAB2IP	153090	genome.wustl.edu	37	9	124528856	124528856	+	Missense_Mutation	SNP	G	G	A	rs141771432	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	124528856	124528856	G	A	SNP	DAB2IP	NM_032552.2	human	genbank	58_37c	+1	validated	missense	c.1460	p.R487Q	1.000	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like	-	no_errors
DAPK1	1612	genome.wustl.edu	37	9	90322160	90322160	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	9	90322160	90322160	T	A	SNP	DAPK1	NM_004938.2	human	genbank	58_37c	+1	reviewed	missense	c.4174	p.L1392M	0.255	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_DEATH_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540	-	no_errors
DNAH10	196385	genome.wustl.edu	37	12	124377793	124377793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	124377793	124377793	G	A	SNP	DNAH10	NM_207437.3	human	genbank	58_37c	+1	validated	silent	c.8655	p.A2885	0.092	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAJC5	80331	genome.wustl.edu	37	20	62560669	62560669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	20	62560669	62560669	C	T	SNP	DNAJC5	NM_025219.1	human	genbank	58_37c	+1	provisional	missense	c.112	p.L38F	1.000	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1	-	no_errors
EIF4G1	1981	genome.wustl.edu	37	3	184035137	184035137	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	184035137	184035137	C	T	SNP	EIF4G1	NM_182917.3	human	genbank	58_37c	+1	reviewed	missense	c.176	p.P59L	0.998	NULL	HMMPfam_W2,HMMSmart_SM00515,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,superfamily_ARM repeat	-	no_errors
EP300	2033	genome.wustl.edu	37	22	41489026	41489026	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	41489026	41489026	G	A	SNP	EP300	NM_001429.3	human	genbank	58_37c	+1	reviewed	silent	c.18	p.V6	1.000	NULL	HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,superfamily_TAZ_finger,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_KIX,superfamily_KIX,superfamily_Nuc_recept_coact,HMMPfam_DUF906,HMMPfam_DUF902,HMMPfam_Creb_binding,PatternScan_BROMODOMAIN_1	-	no_errors
EPHB2	2048	genome.wustl.edu	37	1	23111019	23111019	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	23111019	23111019	C	T	SNP	EPHB2	NM_004442.6	human	genbank	58_37c	+1	reviewed	silent	c.261	p.H87	0.971	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Gal_bind_like,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ERP29	10961	genome.wustl.edu	37	12	112457615	112457615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	112457615	112457615	G	A	SNP	ERP29	NM_006817.3	human	genbank	58_37c	+1	reviewed	missense	c.200	p.G67D	1.000	superfamily_Thiordxn-like_fd,HMMPfam_ERp29_N	PatternScan_ER_TARGET,HMMPfam_ERp29,superfamily_ERP29_C,superfamily_Thiordxn-like_fd,HMMPfam_ERp29_N	-	no_errors
FAM155A	728215	genome.wustl.edu	37	13	107822931	107822931	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	107822931	107822931	G	C	SNP	FAM155A	NM_001080396.2	human	genbank	58_37c	-1	validated	missense	c.1291	p.L431V	1.000	NULL	NULL	-	no_errors
FAM192A	80011	genome.wustl.edu	37	16	57188374	57188374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	16	57188374	57188374	G	A	SNP	FAM192A	NM_024946.2	human	genbank	58_37c	-1	validated	missense	c.593	p.P198L	0.852	NULL	HMMPfam_Nefa_Nip30_N	-	no_errors
FAM5B	57795	genome.wustl.edu	37	1	177199234	177199234	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	177199234	177199234	C	T	SNP	FAM5B	NM_021165.2	human	genbank	58_37c	+1	provisional	silent	c.222	p.F74	1.000	NULL	HMMSmart_SM00457	-	no_errors
FAM98B	283742	genome.wustl.edu	37	15	38757568	38757568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	15	38757568	38757568	C	T	SNP	FAM98B	NM_173611.2	human	genbank	58_37c	+1	validated	missense	c.316	p.R106C	0.958	HMMPfam_DUF2465	HMMPfam_DUF2465	-	no_errors
FCGRT	2217	genome.wustl.edu	37	19	50017360	50017360	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	50017360	50017360	C	T	SNP	FCGRT	NM_001136019.2	human	genbank	58_37c	+1	reviewed	silent	c.295	p.L99	0.002	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
FLNA	2316	genome.wustl.edu	37	X	153580968	153580968	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	153580968	153580968	G	A	SNP	FLNA	NM_001110556.1	human	genbank	58_37c	-1	reviewed	missense	c.6455	p.S2152L	0.997	HMMSmart_SM00557,superfamily_E set domains	HMMSmart_SM00557,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_E set domains,superfamily_Calponin-homology domain CH-domain,HMMPfam_Filamin	-	no_errors
FOXO4	4303	genome.wustl.edu	37	X	70320750	70320750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	70320750	70320750	G	A	SNP	FOXO4	NM_005938.3	human	genbank	58_37c	+1	reviewed	missense	c.670	p.E224K	0.943	NULL	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GAL	51083	genome.wustl.edu	37	11	68458384	68458384	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	68458384	68458384	G	A	SNP	GAL	NM_015973.3	human	genbank	58_37c	+1	validated	splice_site	c.302-1	e5-1	0.991	-	-	-	no_errors
GJA10	81025	genome.wustl.edu	37	6	90604284	90604284	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	6	90604284	90604284	C	T	SNP	GJA10	NM_032602.1	human	genbank	58_37c	+1	validated	nonsense	c.97	p.R33*	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
GOLGA3	2802	genome.wustl.edu	37	12	133351861	133351861	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	133351861	133351861	C	A	SNP	GOLGA3	NM_005895.3	human	genbank	58_37c	-1	reviewed	nonsense	c.4009	p.E1337*	1.000	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
GPR143	4935	genome.wustl.edu	37	X	9714090	9714090	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	9714090	9714090	T	A	SNP	GPR143	NM_000273.2	human	genbank	58_37c	-1	reviewed	missense	c.712	p.T238S	0.002	HMMPfam_Ocular_alb	HMMPfam_Ocular_alb	-	no_errors
GRIA4	2893	genome.wustl.edu	37	11	105481745	105481745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	105481745	105481745	G	C	SNP	GRIA4	NM_000829.3	human	genbank	58_37c	+1	reviewed	missense	c.21	p.Q7H	1.000	NULL	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GTF2H2B	0	genome.wustl.edu	37	5	69718708	69718708	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	69718708	69718708	A	G	SNP	GTF2H2	ENST00000412385	human	ensembl	58_37c	+1	known	silent	c.267	p.E89	1.000	HMMSmart_SM00327,HMMPfam_Ssl1,superfamily_vWA-like	HMMSmart_SM00327,HMMPfam_C1_4,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_Ssl1,superfamily_vWA-like,superfamily_Cysteine-rich domain	-	no_errors
IRAK2	3656	genome.wustl.edu	37	3	10251290	10251290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	10251290	10251290	G	A	SNP	IRAK2	NM_001570.3	human	genbank	58_37c	+1	reviewed	missense	c.442	p.A148T	0.000	NULL	HMMPfam_Death,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_DEATH_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
KBTBD10	10324	genome.wustl.edu	37	2	170366479	170366479	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	170366479	170366479	C	G	SNP	KBTBD10	NM_006063.2	human	genbank	58_37c	+1	validated	missense	c.191	p.S64C	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KCNH7	90134	genome.wustl.edu	37	2	163291915	163291915	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	163291915	163291915	C	A	SNP	KCNH7	NM_033272.2	human	genbank	58_37c	-1	reviewed	missense	c.1747	p.D583Y	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KDR	3791	genome.wustl.edu	37	4	55973912	55973912	+	Silent	SNP	G	G	A	rs141384787	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	55973912	55973912	G	A	SNP	KDR	NM_002253.2	human	genbank	58_37c	-1	reviewed	silent	c.1404	p.N468	0.064	HMMSmart_IG,superfamily_SSF48726	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
KIAA0391	9692	genome.wustl.edu	37	14	35742701	35742701	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	14	35742701	35742701	G	A	SNP	KIAA0391	NM_014672.2	human	genbank	58_37c	+1	provisional	missense	c.1681	p.D561N	1.000	NULL	NULL	-	no_errors
KIF20B	9585	genome.wustl.edu	37	10	91497970	91497970	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	10	91497970	91497970	G	A	SNP	KIF20B	NM_016195.2	human	genbank	58_37c	+1	validated	silent	c.3252	p.L1084	0.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LCA5L	150082	genome.wustl.edu	37	21	40795105	40795105	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	21	40795105	40795105	G	A	SNP	LCA5L	NM_152505.3	human	genbank	58_37c	-1	validated	nonsense	c.634	p.Q212*	0.926	NULL	NULL	-	no_errors
LGALS4	3960	genome.wustl.edu	37	19	39292707	39292707	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	39292707	39292707	G	A	SNP	LGALS4	NM_006149.3	human	genbank	58_37c	-1	reviewed	silent	c.750	p.S250	0.919	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
LRTM1	57408	genome.wustl.edu	37	3	54959016	54959016	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	54959016	54959016	G	A	SNP	LRTM1	NM_020678.2	human	genbank	58_37c	-1	provisional	silent	c.234	p.T78	0.966	HMMSmart_SM00369,superfamily_L domain-like	HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
MCF2L	23263	genome.wustl.edu	37	13	113699676	113699676	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	113699676	113699676	G	T	SNP	MCF2L	NM_001112732.1	human	genbank	58_37c	+1	validated	splice_site	c.540+1	e4+1	0.998	-	-	-	no_errors
MED13	9969	genome.wustl.edu	37	17	60040309	60040309	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	60040309	60040309	C	G	SNP	MED13	NM_005121.2	human	genbank	58_37c	-1	reviewed	missense	c.4868	p.G1623A	1.000	HMMPfam_TRAP_240kDa	HMMPfam_TRAP_240kDa	-	no_errors
MKI67	4288	genome.wustl.edu	37	10	129913245	129913245	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	10	129913245	129913245	G	C	SNP	MKI67	NM_002417.4	human	genbank	58_37c	-1	reviewed	missense	c.1427	p.S476C	0.039	NULL	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R	-	no_errors
MLL	4297	genome.wustl.edu	37	11	118375784	118375784	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	118375784	118375784	G	A	SNP	MLL	NM_005933.2	human	genbank	58_37c	+1	validated	silent	c.9168	p.P3056	0.291	NULL	PatternScan_HMGI_Y,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,PatternScan_RECR,HMMPfam_AT_hook,PatternScan_EF_HAND_1,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151932949	151932949	+	Missense_Mutation	SNP	C	C	A	rs148983031	byFrequency	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	151932949	151932949	C	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.2722	p.G908C	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MON1A	84315	genome.wustl.edu	37	3	49947969	49947969	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	49947969	49947969	G	A	SNP	MON1A	NM_032355.3	human	genbank	58_37c	-1	validated	missense	c.1253	p.S418F	1.000	HMMPfam_Mon1	HMMPfam_Mon1	-	no_errors
MRE11A	4361	genome.wustl.edu	37	11	94192723	94192723	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	11	94192723	94192723	C	G	SNP	MRE11A	NM_005591.3	human	genbank	58_37c	-1	reviewed	missense	c.1351	p.E451Q	1.000	HMMPfam_Mre11_DNA_bind	HMMPfam_Metallophos,HMMPfam_Mre11_DNA_bind,superfamily_Metallo-dependent phosphatases	-	no_errors
MTUS2	0	genome.wustl.edu	37	13	29600997	29600997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	29600997	29600997	C	T	SNP	MTUS2	NM_001033602.2	human	genbank	58_37c	+1	validated	missense	c.2192	p.P731L	0.998	NULL	NULL	-	no_errors
MYO10	4651	genome.wustl.edu	37	5	16711286	16711286	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	16711286	16711286	C	T	SNP	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	silent	c.1998	p.V666	0.999	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
NR3C2	4306	genome.wustl.edu	37	4	149075853	149075853	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	149075853	149075853	G	A	SNP	NR3C2	NM_000901.4	human	genbank	58_37c	-1	reviewed	silent	c.2214	p.P738	0.000	superfamily_Str_ncl_receptor	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
NR4A1	3164	genome.wustl.edu	37	12	52448796	52448796	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	52448796	52448796	G	A	SNP	NR4A1	NM_002135.3	human	genbank	58_37c	+1	reviewed	silent	c.684	p.T228	0.000	NULL	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NRBP1	29959	genome.wustl.edu	37	2	27663559	27663559	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	27663559	27663559	G	C	SNP	NRBP1	NM_013392.2	human	genbank	58_37c	+1	validated	missense	c.1183	p.E395Q	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
NRP2	8828	genome.wustl.edu	37	2	206608200	206608200	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	2	206608200	206608200	G	A	SNP	NRP2	NM_201266.1	human	genbank	58_37c	+1	reviewed	missense	c.1565	p.R522H	1.000	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,superfamily_Galactose-binding domain-like	-	no_errors
PAPSS1	9061	genome.wustl.edu	37	4	108578129	108578129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	108578129	108578129	C	T	SNP	PAPSS1	NM_005443.4	human	genbank	58_37c	-1	validated	missense	c.818	p.G273D	1.000	superfamily_PUA domain-like	HMMPfam_ATP-sulfurylase,HMMPfam_APS_kinase,superfamily_PUA domain-like,superfamily_Nucleotidylyl transferase,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91134233	91134233	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	91134233	91134233	G	T	SNP	PCDH11X	NM_032968.3	human	genbank	58_37c	+1	reviewed	silent	c.2994	p.V998	1.000	HMMPfam_Protocadherin	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like	-	no_errors
PCDHB1	29930	genome.wustl.edu	37	5	140433272	140433272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	140433272	140433272	C	T	SNP	PCDHB1	NM_013340.2	human	genbank	58_37c	+1	reviewed	silent	c.2217	p.N739	0.126	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCDHB6	56130	genome.wustl.edu	37	5	140530673	140530673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	140530673	140530673	G	A	SNP	PCDHB6	NM_018939.2	human	genbank	58_37c	+1	reviewed	missense	c.835	p.A279T	0.001	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PHOSPHO1	162466	genome.wustl.edu	37	17	47302390	47302392	+	In_Frame_Del	DEL	AGG	AGG	-	rs146708566	by1000genomes	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	47302390	47302392	AGG	-	DEL	PHOSPHO1	NM_001143804.1	human	genbank	58_37c	-1	validated	in_frame_del	c.97_95	p.S32in_frame_del	0.092:0.143:0.249	NULL	HMMPfam_Put_Phosphatase,superfamily_HAD-like	-	no_errors
PI4KA	5297	genome.wustl.edu	37	22	21096566	21096566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	21096566	21096566	G	A	SNP	PI4KA	NM_058004.2	human	genbank	58_37c	-1	reviewed	silent	c.3517	p.L1173	1.000	NULL	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLCG1	5335	genome.wustl.edu	37	20	39793935	39793935	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	20	39793935	39793935	G	T	SNP	PLCG1	NM_002660.2	human	genbank	58_37c	+1	reviewed	missense	c.1437	p.M479I	0.774	superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF50729,superfamily_SSF55550	-	no_errors
POLE	5426	genome.wustl.edu	37	12	133220066	133220066	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	133220066	133220066	G	C	SNP	POLE	NM_006231.2	human	genbank	58_37c	-1	validated	silent	c.4371	p.G1457	1.000	NULL	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,HMMPfam_DUF1744,superfamily_SSF56672	-	no_errors
RAB3C	115827	genome.wustl.edu	37	5	58021869	58021869	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	5	58021869	58021869	C	A	SNP	RAB3C	NM_138453.2	human	genbank	58_37c	+1	provisional	missense	c.293	p.A98D	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RBM34	23029	genome.wustl.edu	37	1	235301419	235301419	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	235301419	235301419	G	A	SNP	RBM34	NM_015014.2	human	genbank	58_37c	-1	validated	nonsense	c.757	p.Q253*	0.006	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RGAG1	57529	genome.wustl.edu	37	X	109695584	109695584	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	109695584	109695584	T	C	SNP	RGAG1	NM_020769.2	human	genbank	58_37c	+1	validated	missense	c.1739	p.M580T	0.093	NULL	HMMPfam_Retrotrans_gag	-	no_errors
SACS	26278	genome.wustl.edu	37	13	23905513	23905513	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	13	23905513	23905513	G	A	SNP	SACS	NM_014363.4	human	genbank	58_37c	-1	reviewed	silent	c.12502	p.L4168	0.997	NULL	HMMPfam_ubiquitin,superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Ubiquitin-like,superfamily_Nucleotidyltransferase substrate binding subunit/domain	-	no_errors
SHC1	6464	genome.wustl.edu	37	1	154938529	154938529	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	154938529	154938529	G	C	SNP	SHC1	NM_001130040.1	human	genbank	58_37c	-1	validated	missense	c.1280	p.S427C	1.000	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
SIRT1	23411	genome.wustl.edu	37	10	69672725	69672725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	10	69672725	69672725	G	A	SNP	SIRT1	NM_001142498.1	human	genbank	58_37c	+1	reviewed	missense	c.967	p.G323R	1.000	NULL	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain	-	no_errors
SMARCD3	6604	genome.wustl.edu	37	7	150937577	150937577	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	150937577	150937577	T	C	SNP	SMARCD3	NM_001003801.1	human	genbank	58_37c	-1	reviewed	missense	c.971	p.E324G	1.000	HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,HMMSmart_SM00151	HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,HMMSmart_SM00151	-	no_errors
SPANXN5	494197	genome.wustl.edu	37	X	52825543	52825543	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	52825543	52825543	C	G	SNP	SPANXN5	NM_001009616.2	human	genbank	58_37c	-1	validated	missense	c.204	p.E68D	0.140	NULL	HMMPfam_SPAN-X	-	no_errors
SPARCL1	8404	genome.wustl.edu	37	4	88415533	88415533	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	4	88415533	88415533	A	G	SNP	SPARCL1	NM_001128310.1	human	genbank	58_37c	-1	validated	missense	c.419	p.F140S	0.004	NULL	PatternScan_OSTEONECTIN_1,PatternScan_OSTEONECTIN_2,HMMPfam_Kazal_1,HMMSmart_SM00280,HMMSmart_SM00274,HMMPfam_FOLN,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg,superfamily_Kazal-type serine protease inhibitors,superfamily_EF-hand	-	no_errors
SREBF2	6721	genome.wustl.edu	37	22	42271676	42271676	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	22	42271676	42271676	C	G	SNP	SREBF2	NM_004599.2	human	genbank	58_37c	+1	reviewed	missense	c.1334	p.S445C	1.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
SRRM4	84530	genome.wustl.edu	37	12	119419693	119419693	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	119419693	119419693	G	A	SNP	SRRM4	NM_194286.2	human	genbank	58_37c	+1	validated	silent	c.6	p.A2	0.977	NULL	NULL	-	no_errors
STAG1	10274	genome.wustl.edu	37	3	136062775	136062775	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	136062775	136062775	T	C	SNP	STAG1	NM_005862.2	human	genbank	58_37c	-1	reviewed	silent	c.3345	p.P1115	0.961	NULL	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
STAG1	10274	genome.wustl.edu	37	3	136076644	136076644	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	3	136076644	136076644	C	G	SNP	STAG1	NM_005862.2	human	genbank	58_37c	-1	reviewed	missense	c.2983	p.E995Q	1.000	NULL	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
TMCO7	79613	genome.wustl.edu	37	16	68943146	68943147	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	16	68943146	68943147	AG	-	DEL	TMCO7	NM_024562.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.1833_1834	p.E612fs	0.996:0.996	superfamily_ARM repeat,HMMPfam_DUF2435	HMMPfam_HEAT,superfamily_ARM repeat,HMMPfam_DUF2411,HMMPfam_DUF2435	-	no_errors
TNN	63923	genome.wustl.edu	37	1	175096180	175096180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	1	175096180	175096180	G	A	SNP	TNN	NM_022093.1	human	genbank	58_37c	+1	validated	missense	c.3004	p.G1002S	0.999	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577067	7577085	+	Frame_Shift_Del	DEL	TGCGGAGATTCTCTTCCTC	TGCGGAGATTCTCTTCCTC	-	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	TGCGGAGATTCTCTTCCTC	TGCGGAGATTCTCTTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	7577067	7577085	TGCGGAGATTCTCTTCCTC	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.871_853	p.E285fs	1.000:1.000:0.995:1.000:0.998:0.995:0.983:0.990:0.994:0.991:0.910:1.000:1.000:1.000:1.000:1.000:0.986:1.000:0.995	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	7577082	7577082	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.856	p.E286K	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSPYL2	64061	genome.wustl.edu	37	X	53113974	53113974	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	X	53113974	53113974	T	C	SNP	TSPYL2	NM_022117.3	human	genbank	58_37c	+1	reviewed	missense	c.923	p.M308T	1.000	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
TUBB4	10382	genome.wustl.edu	37	19	6495820	6495820	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	19	6495820	6495820	C	T	SNP	TUBB4	NM_006087.2	human	genbank	58_37c	-1	provisional	silent	c.690	p.S230	0.912	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
VWF	7450	genome.wustl.edu	37	12	6091108	6091108	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	6091108	6091108	C	T	SNP	VWF	NM_000552.3	human	genbank	58_37c	-1	reviewed	silent	c.7131	p.P2377	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL,superfamily_vWA-like	-	no_errors
WBSCR17	64409	genome.wustl.edu	37	7	70886058	70886058	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	70886058	70886058	G	A	SNP	WBSCR17	NM_022479.1	human	genbank	58_37c	+1	reviewed	nonsense	c.929	p.W310*	1.000	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
WDR7	23335	genome.wustl.edu	37	18	54350050	54350050	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	18	54350050	54350050	C	T	SNP	WDR7	NM_015285.2	human	genbank	58_37c	+1	reviewed	silent	c.486	p.S162	1.000	superfamily_Prolyl oligopeptidase N-terminal domain	HMMSmart_SM00320,superfamily_Prolyl oligopeptidase N-terminal domain,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZFC3H1	196441	genome.wustl.edu	37	12	72013172	72013172	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	12	72013172	72013172	A	G	SNP	ZFC3H1	NM_144982.4	human	genbank	58_37c	-1	validated	silent	c.5067	p.L1689	1.000	NULL	HMMSmart_SM00386,HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase	-	no_errors
ZFP3	124961	genome.wustl.edu	37	17	4996237	4996237	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	4996237	4996237	C	T	SNP	ZFP3	NM_153018.2	human	genbank	58_37c	+1	validated	nonsense	c.1438	p.Q480*	0.069	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF217	7764	genome.wustl.edu	37	20	52198134	52198134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	20	52198134	52198134	G	A	SNP	ZNF217	NM_006526.2	human	genbank	58_37c	-1	validated	missense	c.1232	p.S411F	0.064	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF3	7551	genome.wustl.edu	37	7	99662436	99662436	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	7	99662436	99662436	C	T	SNP	ZNF3	NM_017715.2	human	genbank	58_37c	-1	validated	missense	c.371	p.S124N	0.004	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	-	no_errors
ZZEF1	23140	genome.wustl.edu	37	17	3961435	3961435	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01A-21D-A12B-09	TCGA-BH-A18U-11A-23D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8400863-c145-4c6c-bcf3-e4cc4d816d22	f0d1235d-8fc6-4849-8506-9d8dce2eabaa	17	3961435	3961435	G	C	SNP	ZZEF1	NM_015113.3	human	genbank	58_37c	-1	validated	missense	c.5018	p.A1673G	1.000	NULL	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Spermadhesin CUB domain,HMMSmart_SM00054,HMMPfam_APC10,superfamily_Galactose-binding domain-like,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
