Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADD3	0	genome.wustl.edu	37	10	111860429	111860429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	111860429	111860429	C	T	SNP	ADD3	NM_016824.3	human	genbank	58_37c	+1	reviewed	silent	c.18	p.S6	0.987	NULL	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase	-	no_errors
ALOXE3	0	genome.wustl.edu	37	17	7999968	7999968	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	7999968	7999968	T	A	SNP	ALOXE3	NM_021628.2	human	genbank	58_37c	-1	reviewed	missense	c.2113	p.I705F	0.920	superfamily_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase	-	no_errors
ANK3	0	genome.wustl.edu	37	10	61833656	61833656	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	61833656	61833656	C	T	SNP	ANK3	NM_020987.2	human	genbank	58_37c	-1	reviewed	missense	c.6983	p.R2328H	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
C1orf113	0	genome.wustl.edu	37	1	36785498	36785498	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	36785498	36785498	A	G	SNP	C1orf113	NM_024676.4	human	genbank	58_37c	+1	validated	missense	c.172	p.K58E	0.001	NULL	NULL	-	no_errors
CCDC144A	0	genome.wustl.edu	37	17	16612273	16612273	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	16612273	16612273	G	C	SNP	CCDC144A	NM_014695.1	human	genbank	58_37c	+1	provisional	missense	c.902	p.R301T	0.975	NULL	NULL	-	no_errors
CCNYL2	0	genome.wustl.edu	37	10	42924561	42924594	+	Frame_Shift_Del	DEL	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	42924561	42924594	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	DEL	CCNYL2	ENST00000426433	human	ensembl	58_37c	-1	known	frame_shift_del	c.471_438	p.D146fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:1.000:1.000:0.999:1.000:0.996:0.996:0.999	HMMSmart_CYCLIN,superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like	-	no_errors
CHD6	0	genome.wustl.edu	37	20	40143457	40143457	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	20	40143457	40143457	G	C	SNP	CHD6	NM_032221.3	human	genbank	58_37c	-1	reviewed	missense	c.689	p.S230C	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COL18A1	0	genome.wustl.edu	37	21	46875461	46875461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	21	46875461	46875461	G	A	SNP	COL18A1	NM_130444.2	human	genbank	58_37c	+1	reviewed	missense	c.17	p.C6Y	0.788	NULL	superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF959,HMMPfam_Endostatin,superfamily_C-type lectin-like,HMMPfam_Fz,HMMSmart_SM00063	-	no_errors
COL6A5	0	genome.wustl.edu	37	3	130120614	130120614	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	3	130120614	130120614	T	G	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	missense	c.4143	p.I1381M	1.000	superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
DCAF10	0	genome.wustl.edu	37	9	37861271	37861271	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	9	37861271	37861271	C	G	SNP	DCAF10	NM_024345.3	human	genbank	58_37c	+1	validated	silent	c.1446	p.P482	0.968	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242869	31242869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	31242869	31242869	G	A	SNP	DDX11	ENST00000404673	human	ensembl	58_37c	+1	known	missense	c.842	p.R281K	0.203	HMMSmart_DEXDc2	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540	-	no_errors
DYX1C1	0	genome.wustl.edu	37	15	55727242	55727242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	15	55727242	55727242	G	A	SNP	DYX1C1	NM_130810.2	human	genbank	58_37c	-1	reviewed	missense	c.908	p.T303M	0.872	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,superfamily_HSP20-like chaperones,HMMPfam_CS,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
EDC4	0	genome.wustl.edu	37	16	67917881	67917881	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	16	67917881	67917881	C	A	SNP	EDC4	NM_014329.3	human	genbank	58_37c	+1	validated	missense	c.4036	p.H1346N	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13463	13463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	MT	13463	13463	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1127	p.G376D	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000215179	0	genome.wustl.edu	37	8	47885500	47885500	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	47885500	47885500	C	G	SNP	ENSG00000215179	ENST00000399732	human	ensembl	58_37c	-1	known	missense	c.731	p.C244S	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_stop_codon
ENSG00000232657	0	genome.wustl.edu	37	4	49110441	49110441	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	4	49110441	49110441	T	C	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.61	p.M21V	0.000	NULL	NULL	-	no_stop_codon
EPDR1	0	genome.wustl.edu	37	7	37960263	37960275	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	7	37960263	37960275	AGGCAGTGGCAGC	-	DEL	EPDR1	NM_017549.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.82_94	p.Q31fs	0.174:0.169:0.163:0.158:0.152:0.146:0.139:0.133:0.126:0.118:0.111:0.103:0.095	NULL	HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2	-	no_errors
FERMT2	0	genome.wustl.edu	37	14	53417294	53417317	+	Splice_Site	DEL	TCCTGCGAGCGCGGAGGAAATGGC	TCCTGCGAGCGCGGAGGAAATGGC	-	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	TCCTGCGAGCGCGGAGGAAATGGC	TCCTGCGAGCGCGGAGGAAATGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	14	53417294	53417317	TCCTGCGAGCGCGGAGGAAATGGC	-	DEL	FERMT2	NM_001134999.1	human	genbank	58_37c	-1	validated	splice_site_del	c.1-22_45	e1-1	1.000:1.000:1.000:1.000:1.000:0.959:0.942:0.908:0.901:0.634:0.540:0.517:0.560:0.653:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996	-	-	-	no_errors
FLG2	0	genome.wustl.edu	37	1	152329372	152329372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	152329372	152329372	G	A	SNP	FLG2	NM_001014342.2	human	genbank	58_37c	-1	provisional	missense	c.890	p.S297F	1.000	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
GNPAT	0	genome.wustl.edu	37	1	231406538	231406538	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	231406538	231406538	C	T	SNP	GNPAT	NM_014236.3	human	genbank	58_37c	+1	reviewed	silent	c.1314	p.S438	0.015	NULL	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593	-	no_errors
GRLF1	0	genome.wustl.edu	37	19	47422652	47422652	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	47422652	47422652	C	T	SNP	GRLF1	NM_004491.4	human	genbank	58_37c	+1	reviewed	silent	c.720	p.F240	1.000	HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GUCY2C	0	genome.wustl.edu	37	12	14774139	14774139	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	14774139	14774139	G	A	SNP	GUCY2C	NM_004963.3	human	genbank	58_37c	-1	validated	silent	c.2613	p.I871	0.989	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
GUCY2C	0	genome.wustl.edu	37	12	14822720	14822720	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	14822720	14822720	A	C	SNP	GUCY2C	NM_004963.3	human	genbank	58_37c	-1	validated	silent	c.1218	p.P406	0.000	superfamily_Periplasmic binding protein-like I	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377009	168377009	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	6	168377009	168377009	T	G	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	silent	c.324	p.P108	0.936	NULL	NULL	-	no_errors
IGSF3	0	genome.wustl.edu	37	1	117158982	117158982	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	117158982	117158982	G	T	SNP	IGSF3	NM_001542.2	human	genbank	58_37c	-1	validated	nonsense	c.141	p.Y47*	0.994	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
INADL	0	genome.wustl.edu	37	1	62293124	62293124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	62293124	62293124	C	T	SNP	INADL	NM_176877.2	human	genbank	58_37c	+1	reviewed	missense	c.1849	p.R617C	1.000	HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
ITPR2	0	genome.wustl.edu	37	12	26818867	26818867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	26818867	26818867	C	T	SNP	ITPR2	NM_002223.2	human	genbank	58_37c	-1	validated	missense	c.1527	p.M509I	1.000	HMMPfam_RYDR_ITPR,superfamily_IP3 receptor type 1 binding core domain 2	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
JAK1	0	genome.wustl.edu	37	1	65307285	65307285	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	65307285	65307285	C	G	SNP	JAK1	NM_002227.2	human	genbank	58_37c	-1	reviewed	splice_site	c.2404-1	e17-1	1.000	-	-	-	no_errors
LOC100287382	0	genome.wustl.edu	37	9	52577	52577	+	Missense_Mutation	SNP	G	G	A	rs1810561	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	9	52577	52577	G	A	SNP	LOC100287382	XM_002342901.1	human	genbank	58_37c	-1	model	missense	c.896	p.S299L	1.000	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS	-	no_errors
LOC100288406	0	genome.wustl.edu	37	12	92018	92018	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	92018	92018	T	C	SNP	LOC100288406	XM_002343141.1	human	genbank	58_37c	+1	model	silent	c.42	p.T14	0.001	NULL	NULL	-	pseudogene
LOC100288788	0	genome.wustl.edu	37	X	65176909	65176909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	X	65176909	65176909	C	T	SNP	LOC100288788	XM_002343822.1	human	genbank	58_37c	-1	model	missense	c.130	p.E44K	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
LOC642424	0	genome.wustl.edu	37	10	42681108	42681108	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	42681108	42681108	C	A	SNP	LOC642424	XM_001717196.2	human	genbank	58_37c	+1	model	silent	c.573	p.S191	0.053	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
LOC646201	0	genome.wustl.edu	37	13	23471931	23471931	+	RNA	SNP	T	C	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	13	23471931	23471931	T	C	SNP	LOC646201	XR_016396.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.084	-	-	-	pseudogene
MACF1	0	genome.wustl.edu	37	1	39918358	39918358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	39918358	39918358	G	A	SNP	MACF1	ENST00000372925	human	ensembl	58_37c	+1	known	missense	c.11449	p.G3817R	0.160	HMMPfam_Spectrin,superfamily_Spectrin repeat	HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MAGEB1	0	genome.wustl.edu	37	X	30268685	30268685	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	X	30268685	30268685	C	G	SNP	MAGEB1	NM_002363.4	human	genbank	58_37c	+1	reviewed	silent	c.75	p.L25	0.000	NULL	HMMPfam_MAGE	-	no_errors
MAP2K4	0	genome.wustl.edu	37	17	12044463	12044463	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	12044463	12044463	G	C	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1087-1	e11-1	1.000	-	-	-	no_errors
MGAT3	0	genome.wustl.edu	37	22	39884229	39884229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	22	39884229	39884229	C	T	SNP	MGAT3	NM_001098270.1	human	genbank	58_37c	+1	reviewed	missense	c.877	p.R293C	1.000	HMMPfam_Glyco_transf_17	HMMPfam_Glyco_transf_17	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151860481	151860481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	7	151860481	151860481	C	T	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.10181	p.S3394N	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100612955	100612956	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	7	100612955	100612956	-	CTG	INS	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	in_frame_ins	c.52_53	p.19in_frame_insA	0.000:0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16899669	16899669	+	Silent	SNP	C	C	T	rs4127102	by2Hit2Allele	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	16899669	16899669	C	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	silent	c.2418	p.E806	0.002	NULL	HMMPfam_DUF1220	-	no_errors
NCR1	0	genome.wustl.edu	37	19	55417683	55417683	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	55417683	55417683	G	A	SNP	NCR1	NM_004829.5	human	genbank	58_37c	+1	validated	missense	c.61	p.A21T	0.000	NULL	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881820	50881821	+	In_Frame_Ins	INS	-	-	AAC	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	50881820	50881821	-	AAC	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.514_515	p.176in_frame_insQ	0.998:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
OR11H1	0	genome.wustl.edu	37	22	16449784	16449784	+	Missense_Mutation	SNP	C	C	A	rs2259944	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	22	16449784	16449784	C	A	SNP	OR11H1	NM_001005239.1	human	genbank	58_37c	-1	provisional	missense	c.21	p.Q7H	0.037	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PGAP1	0	genome.wustl.edu	37	2	197744811	197744811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	197744811	197744811	G	A	SNP	PGAP1	NM_024989.3	human	genbank	58_37c	-1	validated	missense	c.1339	p.R447C	0.979	NULL	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PINX1	0	genome.wustl.edu	37	8	10623041	10623041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	10623041	10623041	C	T	SNP	PINX1	NM_017884.4	human	genbank	58_37c	-1	provisional	missense	c.857	p.G286D	0.000	NULL	HMMPfam_G-patch,HMMSmart_SM00443	-	no_errors
POTEC	0	genome.wustl.edu	37	18	14535001	14535001	+	Silent	SNP	G	G	C	rs61997955	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	18	14535001	14535001	G	C	SNP	POTEC	NM_001137671.1	human	genbank	58_37c	-1	validated	silent	c.816	p.G272	0.900	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
POTEE	0	genome.wustl.edu	37	2	132021946	132021946	+	Missense_Mutation	SNP	G	G	A	rs78598826	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	132021946	132021946	G	A	SNP	POTEE	NM_001083538.1	human	genbank	58_37c	+1	validated	missense	c.2918	p.G973D	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
RIMBP3B	0	genome.wustl.edu	37	22	21742598	21742598	+	Missense_Mutation	SNP	G	G	A	rs468931	byCluster	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	22	21742598	21742598	G	A	SNP	RIMBP3B	NM_001128635.1	human	genbank	58_37c	+1	validated	missense	c.4451	p.R1484K	0.994	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_SH3_2,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
RSPO2	0	genome.wustl.edu	37	8	108973037	108973037	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	108973037	108973037	T	A	SNP	RSPO2	NM_178565.4	human	genbank	58_37c	-1	validated	missense	c.292	p.I98L	1.000	HMMSmart_SM00261,superfamily_Growth factor receptor domain	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00261,superfamily_Growth factor receptor domain	-	no_errors
SEC24D	0	genome.wustl.edu	37	4	119718868	119718868	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	4	119718868	119718868	G	C	SNP	SEC24D	NM_014822.2	human	genbank	58_37c	-1	reviewed	missense	c.1011	p.I337M	1.000	superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SEC31B	0	genome.wustl.edu	37	10	102266117	102266117	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	10	102266117	102266117	C	T	SNP	SEC31B	NM_015490.3	human	genbank	58_37c	-1	reviewed	silent	c.843	p.K281	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
SEL1L2	0	genome.wustl.edu	37	20	13846124	13846124	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	20	13846124	13846124	C	A	SNP	SEL1L2	NM_025229.1	human	genbank	58_37c	-1	validated	nonsense	c.1441	p.E481*	1.000	NULL	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901	-	no_errors
SLC26A4	0	genome.wustl.edu	37	7	107353011	107353011	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	7	107353011	107353011	A	G	SNP	SLC26A4	NM_000441.1	human	genbank	58_37c	+1	reviewed	missense	c.2263	p.T755A	1.000	NULL	HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp,PatternScan_SLC26A	-	no_errors
SLC4A5	0	genome.wustl.edu	37	2	74477542	74477542	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	74477542	74477542	G	A	SNP	SLC4A5	NM_021196.3	human	genbank	58_37c	-1	reviewed	silent	c.1581	p.F527	1.000	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein	-	no_errors
SMYD1	0	genome.wustl.edu	37	2	88405936	88405936	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	88405936	88405936	G	A	SNP	SMYD1	NM_198274.2	human	genbank	58_37c	+1	provisional	silent	c.1074	p.S358	0.001	NULL	HMMPfam_SET,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_SSF82199	-	no_errors
SPHKAP	0	genome.wustl.edu	37	2	228882873	228882873	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	228882873	228882873	G	T	SNP	SPHKAP	NM_001142644.1	human	genbank	58_37c	-1	validated	silent	c.2697	p.V899	0.000	NULL	HMMPfam_AKAP_110	-	no_errors
TESK2	0	genome.wustl.edu	37	1	45821107	45821107	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	1	45821107	45821107	C	T	SNP	TESK2	NM_007170.2	human	genbank	58_37c	-1	reviewed	silent	c.408	p.G136	0.996	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TGS1	0	genome.wustl.edu	37	8	56723652	56723652	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	8	56723652	56723652	G	C	SNP	TGS1	NM_024831.6	human	genbank	58_37c	+1	validated	missense	c.2356	p.D786H	1.000	HMMPfam_Methyltransf_15	HMMPfam_Methyltransf_15,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578553	7578553	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	17	7578553	7578553	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.377	p.Y126C	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTN	0	genome.wustl.edu	37	2	179527763	179527763	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	179527763	179527763	C	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	silent	c.31503	p.P10501	0.001	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
USP15	0	genome.wustl.edu	37	12	62749202	62749202	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	12	62749202	62749202	C	G	SNP	USP15	NM_006313.1	human	genbank	58_37c	+1	provisional	silent	c.774	p.G258	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
USP34	0	genome.wustl.edu	37	2	61575105	61575105	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	2	61575105	61575105	A	G	SNP	USP34	NM_014709.3	human	genbank	58_37c	-1	validated	missense	c.2185	p.F729L	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
VRK3	0	genome.wustl.edu	37	19	50491661	50491661	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	50491661	50491661	G	A	SNP	VRK3	NM_016440.3	human	genbank	58_37c	-1	reviewed	silent	c.1185	p.P395	0.985	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	-	no_errors
ZFYVE19	0	genome.wustl.edu	37	15	41099876	41099876	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	15	41099876	41099876	G	T	SNP	ZFYVE19	NM_001077268.1	human	genbank	58_37c	+1	validated	missense	c.89	p.G30V	0.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_2FE2S_FER_1,superfamily_FYVE/PHD zinc finger	-	no_errors
ZNF331	0	genome.wustl.edu	37	19	54080627	54080627	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EY-01A-11D-A13L-09	TCGA-BH-A1EY-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c035023-8ea9-4504-8f03-9573745cb6ef	278795b3-a369-43fb-9d82-4d6d3b92ade3	19	54080627	54080627	C	G	SNP	ZNF331	NM_001079906.1	human	genbank	58_37c	+1	validated	nonsense	c.813	p.Y271*	0.010	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
