Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKRD11	0	genome.wustl.edu	37	16	89345615	89345615	+	Missense_Mutation	SNP	C	C	A	rs144497075	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	16	89345615	89345615	C	A	SNP	ANKRD11	NM_013275.4	human	genbank	58_37c	-1	validated	missense	c.7335	p.R2445S	0.749	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
AQP7	0	genome.wustl.edu	37	9	33395131	33395132	+	Frame_Shift_Ins	INS	-	-	CATCTTCCTC	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	9	33395131	33395132	-	CATCTTCCTC	INS	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.89_88	p.Q30fs	0.002:0.003	HMMPfam_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
CASP2	0	genome.wustl.edu	37	7	142997469	142997469	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	7	142997469	142997469	T	C	SNP	CASP2	ENST00000392923	human	ensembl	58_37c	+1	known	splice_site	c.875-1	e8-1	1.000	-	-	-	no_errors
CEP110	0	genome.wustl.edu	37	9	123904505	123904507	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	9	123904505	123904507	AGA	-	DEL	CEP110	NM_007018.4	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2828_2830	p.K944in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
CYP24A1	0	genome.wustl.edu	37	20	52773723	52773723	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	20	52773723	52773723	G	A	SNP	CYP24A1	NM_000782.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1540	p.R514*	0.338	superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCHS1	0	genome.wustl.edu	37	11	6644754	6644754	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	11	6644754	6644754	T	C	SNP	DCHS1	NM_003737.2	human	genbank	58_37c	-1	reviewed	missense	c.8153	p.N2718S	1.000	HMMPfam_Cadherin,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
ENSG00000198695	0	genome.wustl.edu	37	MT	14226	14226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	MT	14226	14226	G	A	SNP	ENSG00000198695	ENST00000361681	human	ensembl	58_37c	-1	known	missense	c.448	p.R150C	NULL	HMMPfam_Oxidored_q3	HMMPfam_Oxidored_q3	-	mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	10993	10993	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	MT	10993	10993	G	A	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	silent	c.234	p.M78	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000217794	0	genome.wustl.edu	37	16	21544302	21544302	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	16	21544302	21544302	C	T	SNP	ENSG00000217794	ENST00000403120	human	ensembl	58_37c	-1	known	silent	c.540	p.A180	0.935	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,PatternScan_ALPHA_CA_1	-	no_start_codon
FAM22F	0	genome.wustl.edu	37	9	97084511	97084511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	9	97084511	97084511	G	A	SNP	FAM22F	NM_017561.1	human	genbank	58_37c	-1	validated	missense	c.814	p.R272W	0.068	NULL	NULL	-	no_errors
FAM5B	0	genome.wustl.edu	37	1	177247731	177247731	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	1	177247731	177247731	G	A	SNP	FAM5B	NM_021165.2	human	genbank	58_37c	+1	provisional	missense	c.1045	p.D349N	0.003	NULL	HMMSmart_SM00457	-	no_errors
HDGFRP2	0	genome.wustl.edu	37	19	4499633	4499647	+	In_Frame_Del	DEL	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG	-	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	19	4499633	4499647	AGCTGGCCGGGGAGG	-	DEL	HDGFRP2	NM_001001520.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1721_1735	p.EELAG578in_frame_del	0.074:0.085:0.097:0.108:0.119:0.130:0.141:0.151:0.162:0.172:0.183:0.193:0.203:0.213:0.223	NULL	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT	-	no_errors
IFT140	0	genome.wustl.edu	37	16	1621431	1621431	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	16	1621431	1621431	A	T	SNP	IFT140	NM_014714.3	human	genbank	58_37c	-1	validated	missense	c.1629	p.F543L	1.000	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40,superfamily_TPR-like	-	no_errors
IGHV4-28	0	genome.wustl.edu	37	14	106780709	106780710	+	In_Frame_Ins	INS	-	-	AAC	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	14	106780709	106780710	-	AAC	INS	IGHV4-28	ENST00000390612	human	ensembl	58_37c	-1	known	in_frame_ins	c.155_154	p.N52in_frame_insSY	0.034:0.012	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
LARP7	0	genome.wustl.edu	37	4	113575296	113575296	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	4	113575296	113575296	A	T	SNP	LARP7	NM_015454.1	human	genbank	58_37c	+1	validated	missense	c.1649	p.K550M	1.000	HMMPfam_RRM_3,superfamily_RNA-binding domain RBD	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_La,HMMSmart_SM00715,HMMPfam_RRM_3,superfamily_""Winged helix"" DNA-binding domain,superfamily_RNA-binding domain RBD"	-	no_errors
LOC442308	0	genome.wustl.edu	37	7	55714284	55714284	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	7	55714284	55714284	C	T	SNP	LOC442308	NR_003598.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
MICAL3	0	genome.wustl.edu	37	22	18305741	18305742	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	22	18305741	18305742	-	G	INS	MICAL3	NM_015241.2	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.3279_3278	p.G1094fs	0.023:0.626	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NAA11	0	genome.wustl.edu	37	4	80246803	80246803	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	4	80246803	80246803	C	T	SNP	NAA11	NM_032693.2	human	genbank	58_37c	-1	validated	missense	c.229	p.V77M	1.000	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	-	no_errors
NACAP1	0	genome.wustl.edu	37	8	102381649	102381650	+	RNA	INS	-	-	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	8	102381649	102381650	-	A	INS	NACAP1	NR_002182.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
NDUFA1	0	genome.wustl.edu	37	X	119005895	119005895	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	X	119005895	119005895	C	T	SNP	NDUFA1	NM_004541.3	human	genbank	58_37c	+1	reviewed	silent	c.21	p.P7	0.730	NULL	NULL	-	no_errors
PDCD11	0	genome.wustl.edu	37	10	105200305	105200305	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	10	105200305	105200305	C	T	SNP	PDCD11	NM_014976.1	human	genbank	58_37c	+1	validated	silent	c.4407	p.G1469	0.964	NULL	HMMPfam_S1,HMMSmart_HAT,superfamily_Nucleic_acid_OB,HMMSmart_S1,superfamily_SSF48452	-	no_errors
PIK3C2A	0	genome.wustl.edu	37	11	17190547	17190547	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	11	17190547	17190547	T	A	SNP	PIK3C2A	NM_002645.2	human	genbank	58_37c	-1	validated	missense	c.742	p.I248L	0.893	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_Ubiquitin-like	-	no_errors
PIK3R1	0	genome.wustl.edu	37	5	67591083	67591083	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	5	67591083	67591083	T	C	SNP	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	missense	c.1676	p.I559T	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PTHLH	0	genome.wustl.edu	37	12	28116584	28116584	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	12	28116584	28116584	G	A	SNP	PTHLH	NM_198965.1	human	genbank	58_37c	-1	reviewed	missense	c.221	p.A74V	1.000	HMMPfam_Parathyroid	HMMPfam_Parathyroid,HMMSmart_SM00087,PatternScan_PARATHYROID	-	no_errors
RAB30	0	genome.wustl.edu	37	11	82708280	82708280	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	11	82708280	82708280	G	T	SNP	RAB30	NM_014488.3	human	genbank	58_37c	-1	provisional	silent	c.79	p.R27	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RASGRP3	0	genome.wustl.edu	37	2	33749009	33749009	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	2	33749009	33749009	T	C	SNP	RASGRP3	NM_001139488.1	human	genbank	58_37c	+1	validated	missense	c.580	p.S194P	1.000	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Ras GEF,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain	-	no_errors
RP1	0	genome.wustl.edu	37	8	55539199	55539199	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	8	55539199	55539199	G	T	SNP	RP1	NM_006269.1	human	genbank	58_37c	+1	reviewed	missense	c.2757	p.W919C	1.000	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors
SDHAP2	0	genome.wustl.edu	37	3	195390967	195390967	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	3	195390967	195390967	A	G	SNP	SDHAP2	NR_003265.3	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
SMARCA2	0	genome.wustl.edu	37	9	2081840	2081840	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	9	2081840	2081840	C	A	SNP	SMARCA2	NM_003070.3	human	genbank	58_37c	+1	reviewed	silent	c.2193	p.G731	1.000	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_QLQ,PatternScan_BROMODOMAIN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STK32A	0	genome.wustl.edu	37	5	146750276	146750276	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	5	146750276	146750276	G	C	SNP	STK32A	NM_001112724.1	human	genbank	58_37c	+1	validated	silent	c.720	p.T240	0.024	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TAF3	0	genome.wustl.edu	37	10	8006644	8006644	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	10	8006644	8006644	A	G	SNP	TAF3	NM_031923.2	human	genbank	58_37c	+1	provisional	missense	c.1171	p.I391V	0.936	NULL	HMMSmart_PHD,HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
TEP1	0	genome.wustl.edu	37	14	20871899	20871899	+	Missense_Mutation	SNP	G	G	A	rs147598692	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	14	20871899	20871899	G	A	SNP	TEP1	NM_007110.4	human	genbank	58_37c	-1	reviewed	missense	c.1177	p.R393W	0.000	HMMPfam_TROVE	HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMEM37	0	genome.wustl.edu	37	2	120194728	120194729	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	2	120194728	120194729	-	T	INS	TMEM37	NM_183240.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.285_286	p.A95fs	0.000:0.006	NULL	NULL	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	17	7578413	7578413	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.517	p.V173L	0.996	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTN	0	genome.wustl.edu	37	2	179545856	179545856	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	2	179545856	179545856	A	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.29558	p.I9853T	1.000	HMMPfam_PPAK	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
ZZEF1	0	genome.wustl.edu	37	17	3992057	3992057	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FD-01A-11W-A14Q-09	TCGA-BH-A1FD-11B-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b372b5cd-4c38-4cd3-95e0-8708ce5437e7	34eb56b6-eb28-46ca-a5f4-e61a14447e5d	17	3992057	3992057	C	T	SNP	ZZEF1	NM_015113.3	human	genbank	58_37c	-1	validated	missense	c.2156	p.C719Y	1.000	NULL	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Spermadhesin CUB domain,HMMSmart_SM00054,HMMPfam_APC10,superfamily_Galactose-binding domain-like,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
