Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKR1C4	0	genome.wustl.edu	37	10	5254676	5254676	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	10	5254676	5254676	G	A	SNP	AKR1C4	NM_001818.2	human	genbank	58_37c	+1	reviewed	missense	c.668	p.R223Q	0.155	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3,PatternScan_ALDOKETO_REDUCTASE_1	-	no_errors
C6orf221	0	genome.wustl.edu	37	6	74072569	74072569	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	6	74072569	74072569	G	T	SNP	C6orf221	NM_001017361.2	human	genbank	58_37c	+1	validated	silent	c.117	p.L39	0.003	NULL	NULL	-	no_errors
CYP4A22	0	genome.wustl.edu	37	1	47610609	47610609	+	Missense_Mutation	SNP	G	G	A	rs141856283	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	47610609	47610609	G	A	SNP	CYP4A22	NM_001010969.2	human	genbank	58_37c	+1	reviewed	missense	c.1189	p.V397I	0.854	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DDX11L8	0	genome.wustl.edu	37	12	9463867	9463867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	9463867	9463867	G	A	SNP	DDX11L8	ENST00000341155	human	ensembl	58_37c	+1	known	missense	c.2183	p.R728H	0.990	HMMSmart_SM00491	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DEFB105A	0	genome.wustl.edu	37	8	7679549	7679549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	8	7679549	7679549	C	T	SNP	DEFB105A	NM_152250.1	human	genbank	58_37c	-1	reviewed	missense	c.218	p.C73Y	0.244	HMMPfam_Defensin_beta	HMMPfam_Defensin_beta	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	766	766	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	MT	766	766	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000245295	0	genome.wustl.edu	37	16	50703454	50703454	+	RNA	SNP	C	G	G	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	16	50703454	50703454	C	G	SNP	ENSG00000245295	ENST00000499937	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.091	-	-	-	no_errors
ENSG00000251705	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	Y	10037843	10037843	C	T	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40383905	40383905	+	Silent	SNP	G	G	A	rs145218790	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	19	40383905	40383905	G	A	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	silent	c.9705	p.C3235	0.488	NULL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
GPR98	0	genome.wustl.edu	37	5	89986809	89986809	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	5	89986809	89986809	A	T	SNP	GPR98	NM_032119.3	human	genbank	58_37c	+1	reviewed	missense	c.6902	p.Q2301L	1.000	HMMSmart_SM00237	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152188847	152188847	+	Missense_Mutation	SNP	A	A	G	rs145667921	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	152188847	152188847	A	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.5258	p.V1753A	0.002	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
KIAA0100	0	genome.wustl.edu	37	17	26970251	26970251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	17	26970251	26970251	G	A	SNP	KIAA0100	NM_014680.2	human	genbank	58_37c	-1	validated	silent	c.327	p.F109	0.997	NULL	HMMPfam_Mqo,HMMPfam_Fmp27_GFWDK,HMMPfam_Apt1	-	no_errors
LILRA4	0	genome.wustl.edu	37	19	54849483	54849483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	19	54849483	54849483	C	T	SNP	LILRA4	NM_012276.3	human	genbank	58_37c	-1	reviewed	missense	c.379	p.A127T	0.035	superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC399804	0	genome.wustl.edu	37	10	97949454	97949455	+	RNA	INS	-	-	ATC	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	10	97949454	97949455	-	ATC	INS	LOC399804	XR_016532.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.355:0.336	-	-	-	pseudogene
MAMLD1	0	genome.wustl.edu	37	X	149613879	149613879	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	149613879	149613879	G	A	SNP	MAMLD1	NM_005491.3	human	genbank	58_37c	+1	reviewed	splice_site	c.96+1	e1+1	1.000	-	-	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56171109	56171115	+	Frame_Shift_Del	DEL	CTGTCTA	CTGTCTA	-	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	CTGTCTA	CTGTCTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	5	56171109	56171115	CTGTCTA	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.1937_1943	p.V647fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100643088	100643088	+	Missense_Mutation	SNP	A	A	G	rs145334771	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	7	100643088	100643088	A	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.9673	p.I3225V	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NBEA	0	genome.wustl.edu	37	13	35785239	35785239	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	13	35785239	35785239	G	C	SNP	NBEA	NM_015678.4	human	genbank	58_37c	+1	validated	silent	c.5571	p.V1857	1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
PCDHGA3	0	genome.wustl.edu	37	5	140725274	140725274	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	5	140725274	140725274	C	T	SNP	PCDHGA3	NM_018916.3	human	genbank	58_37c	+1	reviewed	silent	c.1674	p.N558	0.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PP14571	0	genome.wustl.edu	37	2	241396105	241396105	+	RNA	SNP	G	A	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	241396105	241396105	G	A	SNP	PP14571	NR_024014.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
PPP2R2A	0	genome.wustl.edu	37	8	26227655	26227655	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	8	26227655	26227655	T	A	SNP	PPP2R2A	NM_002717.3	human	genbank	58_37c	+1	reviewed	missense	c.1070	p.V357D	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_PR55_1,PatternScan_PR55_2,HMMPfam_PP2A_B_N,HMMPfam_PP2A_B_subs_rcg	-	no_errors
RAB40A	0	genome.wustl.edu	37	X	102755501	102755501	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	102755501	102755501	G	A	SNP	RAB40A	NM_080879.2	human	genbank	58_37c	-1	reviewed	missense	c.184	p.R62W	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMPfam_SOCS_box,HMMSmart_SOCS,HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RASAL1	0	genome.wustl.edu	37	12	113553739	113553739	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	113553739	113553739	C	A	SNP	RASAL1	NM_004658.1	human	genbank	58_37c	-1	reviewed	missense	c.849	p.E283D	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_BTK,HMMSmart_SM00107,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like	-	no_errors
RPLP0	0	genome.wustl.edu	37	12	120635133	120635133	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	120635133	120635133	C	T	SNP	RPLP0	NM_001002.3	human	genbank	58_37c	-1	reviewed	missense	c.784	p.A262T	1.000	HMMPfam_Ribosomal_60s	HMMPfam_Ribosomal_L10,HMMPfam_Ribosomal_60s	-	no_errors
SPDYE1	0	genome.wustl.edu	37	7	44043475	44043475	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	7	44043475	44043475	C	T	SNP	SPDYE1	NM_175064.2	human	genbank	58_37c	+1	validated	silent	c.511	p.L171	0.412	NULL	NULL	-	no_errors
TMEM184A	0	genome.wustl.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	-	GCC	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	7	1586653	1586654	-	GCC	INS	TMEM184A	NM_001097620.1	human	genbank	58_37c	-1	validated	in_frame_ins	c.1177_1176	p.392in_frame_insG	0.000:0.000	NULL	HMMPfam_DUF300	-	no_errors
TMEM214	0	genome.wustl.edu	37	2	27262671	27262671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	27262671	27262671	G	A	SNP	TMEM214	NM_017727.4	human	genbank	58_37c	+1	validated	missense	c.1588	p.A530T	0.041	HMMPfam_DUF2359	HMMPfam_DUF2359	-	no_errors
TNFSF4	0	genome.wustl.edu	37	1	173155705	173155705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	173155705	173155705	C	T	SNP	TNFSF4	NM_003326.3	human	genbank	58_37c	-1	reviewed	missense	c.502	p.G168R	0.930	HMMPfam_TNF,HMMSmart_SM00207	HMMPfam_TNF,HMMSmart_SM00207,PatternScan_TNF_1,superfamily_TNF-like	-	no_errors
TRIP12	0	genome.wustl.edu	37	2	230663600	230663601	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	230663600	230663601	GA	-	DEL	TRIP12	NM_004238.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.3248_3247	p.S1083fs	1.000:1.000	NULL	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold	-	no_errors
USP32	0	genome.wustl.edu	37	17	58257912	58257912	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	17	58257912	58257912	G	C	SNP	USP32	NM_032582.3	human	genbank	58_37c	-1	validated	missense	c.4635	p.S1545R	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_EFh,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
WDR47	0	genome.wustl.edu	37	1	109553818	109553818	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	109553818	109553818	A	C	SNP	WDR47	NM_001142550.1	human	genbank	58_37c	-1	validated	missense	c.871	p.L291V	0.995	NULL	HMMSmart_SM00320,HMMSmart_SM00667,HMMSmart_SM00668,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WDR54	0	genome.wustl.edu	37	2	74652076	74652076	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	74652076	74652076	A	G	SNP	WDR54	NM_032118.2	human	genbank	58_37c	+1	provisional	silent	c.609	p.T203	0.420	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40	-	no_errors
YIPF6	0	genome.wustl.edu	37	X	67741223	67741223	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	67741223	67741223	A	G	SNP	YIPF6	NM_173834.2	human	genbank	58_37c	+1	provisional	silent	c.318	p.Q106	0.981	HMMPfam_Yip1	HMMPfam_Yip1	-	no_errors
